RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8479
(650 letters)
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 235 bits (602), Expect = 9e-73
Identities = 88/192 (45%), Positives = 117/192 (60%), Gaps = 21/192 (10%)
Query: 114 ETGLGKSTLMDSLFNTSFESTPSP-----HSLPSVKLKAHTYELQENNVKLK-------- 160
E+GLGKST +++LF T + P H +V++K EL+EN VKLK
Sbjct: 12 ESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKLTVIDTPG 71
Query: 161 -------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKS 213
D +K IVDYID+QFE+YL+EE +I R+ D R+H CLYFI PTGHGLK
Sbjct: 72 FGDNINNSDCWKPIVDYIDDQFESYLREESRINRNRR-IPDTRVHCCLYFIPPTGHGLKP 130
Query: 214 LDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDETMSD 273
LD+ MKKL KVNIIP+IAKADT++ EL +FK IM ++ N + IY+FP D+E +
Sbjct: 131 LDIEFMKKLSKKVNIIPVIAKADTLTPEELTEFKKRIMEDIEENNIKIYKFPEDEEDEEE 190
Query: 274 VNAAMTIFSSIP 285
+ + S IP
Sbjct: 191 IEENKKLKSLIP 202
Score = 77.6 bits (192), Expect = 8e-16
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
E+ENE HCDFVKLR +LIRT+++D++E TH HYE YR ++LE
Sbjct: 230 EVENEEHCDFVKLRNLLIRTHLQDLKETTHNVHYENYRSEKLEA 273
Score = 70.3 bits (173), Expect = 3e-13
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 604 LKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFK 640
LK LD+ MKKL KVNIIP+IAKADT++ EL +FK
Sbjct: 128 LKPLDIEFMKKLSKKVNIIPVIAKADTLTPEELTEFK 164
>gnl|CDD|201420 pfam00735, Septin, Septin. Members of this family include CDC3,
CDC10, CDC11 and CDC12/Septin. Members of this family
bind GTP. As regards the septins, these are polypeptides
of 30-65kDa with three characteristic GTPase motifs
(G-1, G-3 and G-4) that are similar to those of the Ras
family. The G-4 motif is strictly conserved with a
unique septin consensus of AKAD. Most septins are
thought to have at least one coiled-coil region, which
in some cases is necessary for intermolecular
interactions that allow septins to polymerise to form
rod-shaped complexes. In turn, these are arranged into
tandem arrays to form filaments. They are
multifunctional proteins, with roles in cytokinesis,
sporulation, germ cell development, exocytosis and
apoptosis.
Length = 280
Score = 183 bits (467), Expect = 4e-53
Identities = 83/193 (43%), Positives = 115/193 (59%), Gaps = 23/193 (11%)
Query: 114 ETGLGKSTLMDSLFNTSF-----ESTPSPHSLPSVKLKAHTYELQENNVKLK-------- 160
E+GLGK+TL+++LF T PS +V++KA T E++E+ VKL
Sbjct: 12 ESGLGKTTLINTLFLTDLIPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLTVIDTPG 71
Query: 161 -------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKS 213
+ +K IV+YID QFE YL++E ++ R+ + DNR+H CLYFI PTGHGLK
Sbjct: 72 FGDAIDNSNCWKPIVEYIDEQFEQYLRDESRLNRT--SIVDNRVHCCLYFISPTGHGLKP 129
Query: 214 LDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEFPTDDE-TMS 272
LD+ MKKL KVNIIP+IAKADT++ ELQ+FK I E+ + IY FP ++
Sbjct: 130 LDVEFMKKLHEKVNIIPVIAKADTLTPDELQRFKKRIRAEIERQNIKIYHFPDEESDEDE 189
Query: 273 DVNAAMTIFSSIP 285
+ + SSIP
Sbjct: 190 EKEQTEQLKSSIP 202
Score = 69.2 bits (170), Expect = 6e-13
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVIGS 450
E+EN HCDF+KLR MLIRT+++D++E TH HYE YR ++L +
Sbjct: 230 EVENPSHCDFLKLRNMLIRTHLQDLKEVTHELHYENYRSEKLSALGRKAEN 280
Score = 61.9 bits (151), Expect = 2e-10
Identities = 25/37 (67%), Positives = 30/37 (81%)
Query: 604 LKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFK 640
LK LD+ MKKL KVNIIP+IAKADT++ ELQ+FK
Sbjct: 127 LKPLDVEFMKKLHEKVNIIPVIAKADTLTPDELQRFK 163
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 163 bits (414), Expect = 1e-44
Identities = 101/337 (29%), Positives = 160/337 (47%), Gaps = 36/337 (10%)
Query: 114 ETGLGKSTLMDSLFNTSFESTPSP------HSLPSVKLKAHTYELQENNVKLK------- 160
E+GLGK+T +++LF TS + P++++K EL+E+ L
Sbjct: 31 ESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTP 90
Query: 161 --------EDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLK 212
++ IVDYID+QF+ YL EE KIKR+ + D R+H CLYFI PTGHGLK
Sbjct: 91 GFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRN-PKFKDTRVHACLYFIRPTGHGLK 149
Query: 213 SLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIY-EFPTDDETM 271
LD+ MK+L +VN+IP+IAKADT++ EL +FK I +L + ++ + +D+
Sbjct: 150 PLDIEAMKRLSKRVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFDPYDPEDDED 209
Query: 272 SDVNAAMTIFSS-----IPCDRSLIHTIFPPCLRST-----SPSSPPH--FHSL-NILAM 318
+ + S I + + + R H F L N+L
Sbjct: 210 ESLEENQDLRSLIPFAIIGSNTEIENGGEQVRGRKYPWGVVEIDDEEHSDFKKLRNLLIR 269
Query: 319 QKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
+ T + LY + + +GL+ E +E E EEE E +++ E+ E+
Sbjct: 270 THLQELKETTENLLYENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREK 329
Query: 379 EEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREM 415
E+ EE E+ EE +E K E + + ++ R
Sbjct: 330 EKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLE 366
Score = 63.5 bits (155), Expect = 1e-10
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 22/95 (23%)
Query: 374 EEEEEEEEEEEEEE-------------EEEEEEEEEEEK---------ELENEGHCDFVK 411
+ E++E+E EE + E E E+ + E+++E H DF K
Sbjct: 203 DPEDDEDESLEENQDLRSLIPFAIIGSNTEIENGGEQVRGRKYPWGVVEIDDEEHSDFKK 262
Query: 412 LREMLIRTNMEDMREKTHCRHYELYRKKRLEEESN 446
LR +LIRT++++++E T YE YR ++L N
Sbjct: 263 LRNLLIRTHLQELKETTENLLYENYRTEKLSGLKN 297
Score = 56.2 bits (136), Expect = 2e-08
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 599 PLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFK 640
P LK LD+ MK+L +VN+IP+IAKADT++ EL +FK
Sbjct: 143 PTGHGLKPLDIEAMKRLSKRVNLIPVIAKADTLTDDELAEFK 184
Score = 36.1 bits (84), Expect = 0.052
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE E +++ E+ E+E+ EE E+ EE +E + EE +++ E+ EK LE
Sbjct: 312 NEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368
Score = 35.8 bits (83), Expect = 0.060
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE E +++ E+ E+E+ EE E+ EE +E + EE +++ E+ E+ EK N+
Sbjct: 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKSNK 372
Query: 405 G 405
Sbjct: 373 S 373
Score = 35.0 bits (81), Expect = 0.11
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
N E E +++ E+ E+E+ EE E+ EE +E + EE +++ E+ E+ E+
Sbjct: 309 ARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368
Query: 399 K 399
K
Sbjct: 369 K 369
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 70.8 bits (174), Expect = 1e-12
Identities = 28/60 (46%), Positives = 51/60 (85%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E+EEEEE+ ++E+EE+++++ EEEEE+ + +EEE+EE+E+ ++E++EEEEEE++ +
Sbjct: 319 GEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 70.4 bits (173), Expect = 2e-12
Identities = 29/64 (45%), Positives = 51/64 (79%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
D + G EE+EEEEE+ ++E+EE+++++ EEEEE+ + +EEE+EE+E+ ++E++EE
Sbjct: 311 DDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEE 370
Query: 397 EEKE 400
EE+E
Sbjct: 371 EEEE 374
Score = 68.9 bits (169), Expect = 4e-12
Identities = 29/59 (49%), Positives = 50/59 (84%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE+EEEEE+ ++E+EE+++++ EEEEE+ + +EEE+EE+E+ ++E++EEEEE+E E
Sbjct: 320 EEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 67.3 bits (165), Expect = 1e-11
Identities = 27/61 (44%), Positives = 51/61 (83%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE+ ++E+EE+++++ EEEEE+ + +EEE+EE+E+ ++E++EEEEEEE+E+K+ ++
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSA 384
Query: 405 G 405
Sbjct: 385 E 385
Score = 67.3 bits (165), Expect = 2e-11
Identities = 28/62 (45%), Positives = 50/62 (80%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE+EEEEE+ ++E+EE+++++ EEEEE+ + +EEE+EE+E+ ++E++EEE+E E E
Sbjct: 318 QGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKE 377
Query: 405 GH 406
Sbjct: 378 KK 379
Score = 64.6 bits (158), Expect = 1e-10
Identities = 25/63 (39%), Positives = 48/63 (76%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ + EE+EEEEE+ ++E+EE+++++ EEEEE+ + +EEE+EE+E+ ++E+++E
Sbjct: 312 DNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEE 371
Query: 402 ENE 404
E E
Sbjct: 372 EEE 374
Score = 63.5 bits (155), Expect = 2e-10
Identities = 24/59 (40%), Positives = 44/59 (74%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+ EE+EEEEE+ ++E+EE+++++ EEEEE+ + +EEE+EE+E+ ++E + E E
Sbjct: 316 LGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEE 374
Score = 60.8 bits (148), Expect = 1e-09
Identities = 24/61 (39%), Positives = 48/61 (78%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E+EE+++++ EEEEE+ + +EEE+EE+E+ ++E++EEEEEEE+E+++++ E
Sbjct: 330 VDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRS 389
Query: 405 G 405
Sbjct: 390 E 390
Score = 60.8 bits (148), Expect = 2e-09
Identities = 23/66 (34%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 342 NGLEEEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ E ++++ + EE+EEEEE+ ++E+EE+++++ EEEEE+ + +EEE+EE+E+
Sbjct: 304 DEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDS 363
Query: 400 ELENEG 405
+ E++
Sbjct: 364 DDEDDE 369
Score = 60.8 bits (148), Expect = 2e-09
Identities = 25/62 (40%), Positives = 52/62 (83%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G+++E+EE+++++ EEEEE+ + +EEE+EE+E+ ++E++EEEEEEE+E+++++ +
Sbjct: 329 GVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388
Query: 403 NE 404
+E
Sbjct: 389 SE 390
Score = 60.4 bits (147), Expect = 2e-09
Identities = 23/56 (41%), Positives = 47/56 (83%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++E+EE+++++ EEEEE+ + +EEE+EE+E+ ++E++EEEEEEE+E+++++
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKS 383
Score = 60.0 bits (146), Expect = 3e-09
Identities = 23/65 (35%), Positives = 45/65 (69%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ ++ + EE+EEEEE+ ++E+EE+++++ EEEEE+ + +EEE+EE+E+ +
Sbjct: 306 FEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDD 365
Query: 400 ELENE 404
E + E
Sbjct: 366 EDDEE 370
Score = 58.1 bits (141), Expect = 1e-08
Identities = 22/61 (36%), Positives = 44/61 (72%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L++E E ++++ + EE+EEEEE+ ++E+EE+++++ EEEEE+ + +EEE E +
Sbjct: 302 LDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDE 361
Query: 404 E 404
+
Sbjct: 362 D 362
Score = 57.7 bits (140), Expect = 1e-08
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 15/83 (18%)
Query: 342 NGLEEEEEEEEEEEEEEE---------------EEEEEEEEEEEEEEEEEEEEEEEEEEE 386
G EE++EEEE+ +E + + EE+EEEEE+ ++E+EE+++++
Sbjct: 283 RGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDL 342
Query: 387 EEEEEEEEEEEEKELENEGHCDF 409
EEEEE+ + +E+E E + D
Sbjct: 343 EEEEEDVDLSDEEEDEEDEDSDD 365
Score = 55.0 bits (133), Expect = 9e-08
Identities = 22/58 (37%), Positives = 44/58 (75%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ +++++ EEEEE+ + +EEE+EE+E+ ++E++EEEEEEE+E+++++ E E
Sbjct: 334 DEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Score = 51.2 bits (123), Expect = 1e-06
Identities = 23/70 (32%), Positives = 44/70 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE++EEEE+ +E ++ ++E E ++++ + EE+EEEEE+ ++E+EE++ + E
Sbjct: 285 EEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEE 344
Query: 405 GHCDFVKLRE 414
D E
Sbjct: 345 EEEDVDLSDE 354
Score = 48.5 bits (116), Expect = 1e-05
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 14/75 (18%)
Query: 345 EEEEEEEEEE--------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
EEE +EE E EEE++EEEE+ +E ++ ++E E ++++ +
Sbjct: 260 EEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQG 319
Query: 391 EEEEEEEEKELENEG 405
EE+EEEEE +++E
Sbjct: 320 EEDEEEEEDGVDDED 334
Score = 45.4 bits (108), Expect = 9e-05
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 344 LEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
L++ E E EEE++EEEE+ +E ++ ++E E ++++ + EE+EEEEE+
Sbjct: 271 LKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGV 330
Query: 398 EKELENEGHCDFVKLRE 414
+ E E + D + E
Sbjct: 331 DDEDEEDDDDDLEEEEE 347
Score = 39.2 bits (92), Expect = 0.008
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
EEE +EE E ++ E E EEE++EEEE+ +E +L++E D
Sbjct: 260 EEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPD 309
Score = 32.3 bits (74), Expect = 0.93
Identities = 12/60 (20%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--KEL 401
L E +++++ ++++ ++++ + ++ E++EE+EEE+ E ++ ++E KE+
Sbjct: 123 LSEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSKKEVMKEV 182
Score = 30.7 bits (70), Expect = 3.0
Identities = 11/58 (18%), Positives = 30/58 (51%)
Query: 334 SFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
S D +++ ++++ + ++ E++EE+EEE+ E ++ ++E +E
Sbjct: 124 SEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSKKEVMKE 181
Score = 30.4 bits (69), Expect = 3.7
Identities = 10/57 (17%), Positives = 31/57 (54%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
K + ++++ ++++ + ++ E++EE+EEE+ E ++ ++E +E
Sbjct: 125 EIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSKKEVMKE 181
Score = 29.6 bits (67), Expect = 5.8
Identities = 15/70 (21%), Positives = 40/70 (57%), Gaps = 12/70 (17%)
Query: 341 FNGLEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEE 389
FN LE+++E+E + E +++++ ++++ ++++ + ++ E++E
Sbjct: 104 FN-LEDDDEDEFVLTHLGQSLSEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDE 162
Query: 390 EEEEEEEEEK 399
E+EEE+ E K
Sbjct: 163 EDEEEQPERK 172
Score = 29.6 bits (67), Expect = 6.1
Identities = 9/53 (16%), Positives = 31/53 (58%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ + ++++ ++++ + ++ E++EE+EEE+ E ++ ++E +E
Sbjct: 129 DDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSKKEVMKE 181
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 70.8 bits (173), Expect = 1e-12
Identities = 33/58 (56%), Positives = 41/58 (70%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E + E +++E+ + + + EEEEEEEEEEEEEEEEEEEEEEEEEE EE LE
Sbjct: 840 ENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897
Score = 69.3 bits (169), Expect = 4e-12
Identities = 33/61 (54%), Positives = 42/61 (68%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E + E +++E+ + + + EEEEEEEEEEEEEEEEEEEEEEEEEE E+ L
Sbjct: 837 LNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSL 896
Query: 404 E 404
E
Sbjct: 897 E 897
Score = 67.3 bits (164), Expect = 1e-11
Identities = 31/55 (56%), Positives = 39/55 (70%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
N + E +++E+ + + + EEEEEEEEEEEEEEEEEEEEEEEEEE EE
Sbjct: 838 NAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 66.9 bits (163), Expect = 2e-11
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 343 GLEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+++E E+E E + E +++E+ + + + EEEEEEEEEEEEEEEEEEEEEE+
Sbjct: 827 EVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEE 886
Query: 400 ELENE 404
E ENE
Sbjct: 887 EEENE 891
Score = 65.0 bits (158), Expect = 8e-11
Identities = 31/63 (49%), Positives = 38/63 (60%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ + + + + EEEEEEEEEEEEEEEEEEEEEEEEEE EE E E
Sbjct: 843 GEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETR 902
Query: 398 EKE 400
+K+
Sbjct: 903 QKQ 905
Score = 62.7 bits (152), Expect = 5e-10
Identities = 31/45 (68%), Positives = 34/45 (75%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
D K +G + + EEEEEEEEEEEEEEEEEEEEEEEEEE EE
Sbjct: 848 DEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 59.2 bits (143), Expect = 5e-09
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E ++E E+E E + E +++E+ + + + EEEEEEEEEEEEEEEEE+E E
Sbjct: 825 DTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEE 884
Query: 403 NE 404
E
Sbjct: 885 EE 886
Score = 53.1 bits (127), Expect = 4e-07
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ E ++E E+E E + E +++E+ + + + EEEEEEEEEEEEEE+E E E
Sbjct: 824 DDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEE 883
Score = 51.1 bits (122), Expect = 2e-06
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 11/73 (15%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEE 391
G ++E E + E + ++ E ++E E+E E + E +++E+ + EEEEEE
Sbjct: 810 GEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEE 869
Query: 392 EEEEEEEKELENE 404
EEEEEEE+E E E
Sbjct: 870 EEEEEEEEEEEEE 882
Score = 49.6 bits (118), Expect = 5e-06
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E+E E E EE EE E+E E E E + E E E + +E E E E E E +E+E+E E++
Sbjct: 725 GTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQ 784
Query: 403 NEG 405
Sbjct: 785 AGE 787
Score = 49.2 bits (117), Expect = 7e-06
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E+E E E + E E E E E + E+E E E E +E + + E E EE E E E E EG
Sbjct: 666 EAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEG 725
Query: 406 HCD 408
D
Sbjct: 726 TED 728
Score = 49.2 bits (117), Expect = 7e-06
Identities = 29/60 (48%), Positives = 35/60 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+E E E E +E + + E E EE E E E E E E+E E E EE EE E+E E E EG
Sbjct: 692 EQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEG 751
Score = 48.8 bits (116), Expect = 9e-06
Identities = 27/59 (45%), Positives = 33/59 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+E E E E +E + + E E EE E E E E E E+E E E EE EE E E E E
Sbjct: 690 KGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE 748
Score = 48.8 bits (116), Expect = 9e-06
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G +E E E E +E + + E E EE E E E E E E+E E E EE EE E+E E E E
Sbjct: 691 GEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE 750
Score = 48.5 bits (115), Expect = 1e-05
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E + E+E E E E +E + + E E EE E E E E E E+E E E EE EE E E EG
Sbjct: 688 ERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEG 747
Score = 48.5 bits (115), Expect = 1e-05
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E E E E E EE E E+E E E + E E E E E + E+E E E E KE +
Sbjct: 646 GEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEAD 705
Query: 403 NEGHCD 408
++G +
Sbjct: 706 HKGETE 711
Score = 48.1 bits (114), Expect = 1e-05
Identities = 25/61 (40%), Positives = 32/61 (52%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E E+E E E + E E E E E + E+E E E E +E + + E E EE E E E
Sbjct: 661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGE 720
Query: 405 G 405
Sbjct: 721 T 721
Score = 48.1 bits (114), Expect = 2e-05
Identities = 30/60 (50%), Positives = 35/60 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E EE E E E E E E+E E E EE EE E+E E E E + E E E + KE E+EG
Sbjct: 709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEG 768
Score = 47.7 bits (113), Expect = 2e-05
Identities = 30/67 (44%), Positives = 36/67 (53%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
G E E E+E E E EE EE E+E E E E + E E E + +E E E E E E
Sbjct: 715 VEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEG 774
Query: 399 KELENEG 405
KE E+EG
Sbjct: 775 KEDEDEG 781
Score = 47.7 bits (113), Expect = 2e-05
Identities = 28/60 (46%), Positives = 35/60 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E +E + + E E EE E E E E E E+E E E EE EE E+E E E E + E+E EG
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759
Score = 47.7 bits (113), Expect = 2e-05
Identities = 25/64 (39%), Positives = 31/64 (48%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E E + E E E E E + E+E E E E +E + + E E EE E E E E E E
Sbjct: 669 QEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTED 728
Query: 402 ENEG 405
E E
Sbjct: 729 EGEI 732
Score = 47.3 bits (112), Expect = 2e-05
Identities = 26/61 (42%), Positives = 32/61 (52%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E E E + E+E E E E +E + + E E EE E E E E E E+E E E E
Sbjct: 678 ENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEE 737
Query: 405 G 405
G
Sbjct: 738 G 738
Score = 46.9 bits (111), Expect = 3e-05
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E + E+E E E E +E + + E E EE E E E E E E+E E E EE +E+E+EG
Sbjct: 686 PAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEG 745
Query: 406 HCD 408
+
Sbjct: 746 EGE 748
Score = 46.1 bits (109), Expect = 5e-05
Identities = 29/62 (46%), Positives = 34/62 (54%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E EE E E E E E E+E E E EE EE E+E E E E + E E E + +E E E
Sbjct: 708 GETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHE 767
Query: 403 NE 404
E
Sbjct: 768 GE 769
Score = 46.1 bits (109), Expect = 5e-05
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E + E+ E + +E E + E E E E E++E E + E + ++ E ++E E+EL E
Sbjct: 782 EIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAEN 841
Query: 406 HCD 408
+
Sbjct: 842 QGE 844
Score = 46.1 bits (109), Expect = 5e-05
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E + + E E EE E E E E E E+E E E EE EE E+E E E E + E E E +
Sbjct: 701 AKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGD 760
Score = 46.1 bits (109), Expect = 6e-05
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E E E E EE E E+E E E + E E E E E + E+E E E+E +
Sbjct: 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAK 702
Query: 405 G 405
Sbjct: 703 E 703
Score = 45.8 bits (108), Expect = 7e-05
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G EE E E+E E E + E E E E E + E+E E E E +E + + E E +E+E
Sbjct: 657 GENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Query: 403 NEG 405
+EG
Sbjct: 717 HEG 719
Score = 45.8 bits (108), Expect = 7e-05
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E+E E E + E E E E E + E+E E E E +E + + E E EE E E E E E
Sbjct: 665 GEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAE 724
Score = 45.8 bits (108), Expect = 8e-05
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E E +E + + E E EE E E E E E E+E E E EE EE E+E E E E ++E
Sbjct: 696 EGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEV 755
Score = 45.4 bits (107), Expect = 1e-04
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 318 MQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
M+ G+ ++ + K + + E + ++ E ++E E+E E + E +++E+
Sbjct: 791 MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEK 850
Query: 378 EEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + + EEEEEEEE+E E E
Sbjct: 851 GVDGGGGSDGGDSEEEEEEEEEEEEEE 877
Score = 45.4 bits (107), Expect = 1e-04
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E +E + + E E EE E E E E E E+E E E EE EE E+E E E E + E E
Sbjct: 698 EIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVET 757
Query: 406 HCD 408
D
Sbjct: 758 EGD 760
Score = 45.4 bits (107), Expect = 1e-04
Identities = 27/61 (44%), Positives = 33/61 (54%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E+E E E EE EE E+E E E E + E E E + +E E E E E E +E E E E
Sbjct: 724 EGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEI 783
Query: 406 H 406
Sbjct: 784 Q 784
Score = 45.4 bits (107), Expect = 1e-04
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E EE EE E+E E E E + E E E + +E E E E E E +E+E+E E + +
Sbjct: 729 EGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGED 788
Query: 405 G 405
G
Sbjct: 789 G 789
Score = 45.4 bits (107), Expect = 1e-04
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E E E E E E+E E E EE EE E+E E E E + E E E + +E E E E E E
Sbjct: 714 EVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAE 773
Query: 403 NEG 405
+
Sbjct: 774 GKE 776
Score = 45.0 bits (106), Expect = 1e-04
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + E E E E E + E+E E E E +E + + E E EE E E E E E E E E E
Sbjct: 674 ETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIE 733
Score = 45.0 bits (106), Expect = 1e-04
Identities = 28/61 (45%), Positives = 33/61 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E E E E E E+E E E EE EE E+E E E E + E E E + +E E E E E
Sbjct: 712 AEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETE 771
Query: 405 G 405
Sbjct: 772 A 772
Score = 45.0 bits (106), Expect = 1e-04
Identities = 30/64 (46%), Positives = 35/64 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E E E E E+E E E EE EE E+E E E E + E E E + +E E E E E E
Sbjct: 714 EVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAE 773
Query: 405 GHCD 408
G D
Sbjct: 774 GKED 777
Score = 44.6 bits (105), Expect = 2e-04
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + + E E EE E E E E E E+E E E EE EE E+E E E E + E E E + +
Sbjct: 703 EADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRK 762
Score = 43.8 bits (103), Expect = 3e-04
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EE E+E E E E + E E E + +E E E E E E +E+E+E E + E+ E++ +
Sbjct: 735 GEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGD 794
Score = 43.8 bits (103), Expect = 3e-04
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE EE E+E E E E + E E E + +E E E E E E +E+E+E E + ++ E +
Sbjct: 733 ETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMK 792
Query: 405 G 405
G
Sbjct: 793 G 793
Score = 43.8 bits (103), Expect = 3e-04
Identities = 25/66 (37%), Positives = 30/66 (45%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E E E EE E E E E EE E E+E E E + E E E E E++ E
Sbjct: 633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGE 692
Query: 403 NEGHCD 408
EG +
Sbjct: 693 QEGEGE 698
Score = 43.8 bits (103), Expect = 3e-04
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E EE E E+E E E + E E E E E + E+E E E E +E + + E E E
Sbjct: 654 EAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAE 713
Query: 405 G 405
Sbjct: 714 E 714
Score = 43.8 bits (103), Expect = 3e-04
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + E E E E E++E E + E + ++ E ++E E+E E + E +++EK ++
Sbjct: 796 GAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGG 855
Query: 405 GHCD 408
G D
Sbjct: 856 GGSD 859
Score = 43.4 bits (102), Expect = 4e-04
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ + E E EE E E E E E E+E E E EE EE E+E E E E + E E + E
Sbjct: 705 DHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKET 764
Score = 42.3 bits (99), Expect = 0.001
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E EE EE E+E E E E + E E E + +E E E E E E +E+E+E E + + E
Sbjct: 731 EIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790
Score = 41.5 bits (97), Expect = 0.001
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E+E E E E + E E E + +E E E E E E +E+E+E E + E+ E + + E
Sbjct: 739 EEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798
Query: 405 G 405
G
Sbjct: 799 G 799
Score = 41.5 bits (97), Expect = 0.002
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EE E+E E E E + E E E + +E E E E E E +E+E+E E + E+ + +E
Sbjct: 736 EEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
Query: 405 G 405
G
Sbjct: 796 G 796
Score = 41.1 bits (96), Expect = 0.002
Identities = 23/62 (37%), Positives = 28/62 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L + + E E E EE E E E E EE E E+E E E + E E E E E
Sbjct: 630 LSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAER 689
Query: 404 EG 405
+G
Sbjct: 690 KG 691
Score = 40.4 bits (94), Expect = 0.003
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E EE E+E E E E + E E E + +E E E E E E +E+E+E E + E+ E + +
Sbjct: 735 GEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGD 794
Query: 403 NE 404
Sbjct: 795 EG 796
Score = 39.2 bits (91), Expect = 0.008
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEKEL 401
E+E E E E + E E E + +E E E E E E +E+E+E E + E+ E +E E ++
Sbjct: 742 EDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKV 801
Query: 402 ENEG 405
E+EG
Sbjct: 802 EHEG 805
Score = 37.3 bits (86), Expect = 0.026
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-EEEEEKELE 402
L + + + E E E EE E E E E EE E E+E E E + E E E E+
Sbjct: 627 LGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIP 686
Query: 403 NEG 405
E
Sbjct: 687 AER 689
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 63.7 bits (155), Expect = 1e-10
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EEEE + E EE E E+ E EE+ E E+E E+E+E EE + EEEE+
Sbjct: 393 EEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 63.7 bits (155), Expect = 1e-10
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EEE + E EE E E+ E EE+ E E+E E+E+E EE + EEEEE
Sbjct: 394 EEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 62.9 bits (153), Expect = 2e-10
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L + EEEE + E EE E E+ E EE+ E E+E E+E+E EE + +E
Sbjct: 385 VAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEE 444
Query: 401 LENE 404
E
Sbjct: 445 EEEA 448
Score = 62.9 bits (153), Expect = 2e-10
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EEEE + E EE E E+ E EE+ E E+E E+E+E EE + EEE+E
Sbjct: 393 EEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 62.1 bits (151), Expect = 4e-10
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + EEEE + E EE E E+ E EE+ E E+E E+E+E EE + E E
Sbjct: 387 ELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEE 446
Query: 405 G 405
Sbjct: 447 E 447
Score = 60.2 bits (146), Expect = 1e-09
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+Y E+ + E + EEEE + E EE E E+ E EE+ E E+E E+E
Sbjct: 375 EYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDE 434
Query: 399 KELENE 404
ELE
Sbjct: 435 DELEEA 440
Score = 59.4 bits (144), Expect = 3e-09
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
L+ E EE E E+ E EE+ E E+E E+E+E EE + EEEEE
Sbjct: 398 LQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 57.9 bits (140), Expect = 8e-09
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E + EEEE + E EE E E+ E EE+ E E+E E+E+E +E + E
Sbjct: 386 AELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEE 444
Score = 55.9 bits (135), Expect = 4e-08
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ E ++E E+ + E + EEEE + E EE E E+ E EE+ E E E
Sbjct: 372 DSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEF 431
Query: 402 ENE 404
E+E
Sbjct: 432 EDE 434
Score = 50.9 bits (122), Expect = 1e-06
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++ E ++E E+ + E + EEEE + E EE E E+ E EE+ E E+
Sbjct: 370 IKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPED 429
Query: 404 EGHCD 408
E +
Sbjct: 430 EFEDE 434
Score = 42.5 bits (100), Expect = 5e-04
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
EE+ E E+E E+E+E EE + EEEEE
Sbjct: 411 AERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 31.3 bits (71), Expect = 1.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREM 415
E ++E E+ + E + EEEE + E EE + + E + +LRE+
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLREL 423
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 64.2 bits (156), Expect = 1e-10
Identities = 38/56 (67%), Positives = 43/56 (76%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E EEEE EEEEEEEEEEEEEE+E EEEE E+EEEEEE E + EEE E +EG
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492
Score = 63.8 bits (155), Expect = 2e-10
Identities = 38/58 (65%), Positives = 43/58 (74%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E EEEE EEEEEEEEEEEEEE+E EEEE E+EEEEEE E + EEE E E +G
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDG 494
Score = 63.4 bits (154), Expect = 2e-10
Identities = 39/88 (44%), Positives = 48/88 (54%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E EEEE EEEEEEEEEEEEEE+E EEEE E+EEEEEE E + EEE E E +
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGD 493
Query: 401 LENEGHCDFVKLREMLIRTNMEDMREKT 428
+ E + + R + +
Sbjct: 494 GDGEEPEEDAERRNSEMAGISRMSEGQQ 521
Score = 63.4 bits (154), Expect = 2e-10
Identities = 36/84 (42%), Positives = 49/84 (58%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ + + +EEEEEEEEEEEEEE+E EEEE E+EEEEEE E + EEE E E
Sbjct: 433 SMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492
Query: 392 EEEEEEEKELENEGHCDFVKLREM 415
+ + EE +E + + + M
Sbjct: 493 DGDGEEPEEDAERRNSEMAGISRM 516
Score = 43.4 bits (102), Expect = 4e-04
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE E+EEEEEE E + EEE E E + + EE EE+ E E + +
Sbjct: 464 EEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPR 523
Query: 405 G 405
G
Sbjct: 524 G 524
Score = 39.9 bits (93), Expect = 0.004
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 19/79 (24%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEE-------------------EEEEEEEEEEEEEEE 385
EEEEEEEE+E EEEE E+EEEEEE E EE EE+ E E
Sbjct: 452 EEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMA 511
Query: 386 EEEEEEEEEEEEEKELENE 404
E ++ ++ E
Sbjct: 512 GISRMSEGQQPRGSSVQPE 530
Score = 39.9 bits (93), Expect = 0.004
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+EEEEEE E + EEE E E + + EE EE+ E E E ++ +
Sbjct: 468 EDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSV 527
Query: 405 G 405
Sbjct: 528 Q 528
Score = 38.4 bits (89), Expect = 0.013
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
G +EEEEEE E + EEE E E + + EE EE+ E E E ++ +
Sbjct: 467 GEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGS 525
Score = 36.8 bits (85), Expect = 0.035
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEEEEEEEEEE 392
KY ++ EEEE + +E E + + + E +E EEEE EEEE
Sbjct: 390 KYAMKQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEE 449
Query: 393 EEEEEEKELENE 404
EEEEEE+E E E
Sbjct: 450 EEEEEEEEEEQE 461
Score = 34.1 bits (78), Expect = 0.29
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 345 EEEEEEEEEEEEEEEEEEEEE-------------------EEEEEEEEEEEEEEEEEEEE 385
EEE+E EEEE E+EEEEEE E EE EE+ E E
Sbjct: 457 EEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRM 516
Query: 386 EEEEEEEEEEEEEKELENE 404
E ++ + + + E
Sbjct: 517 SEGQQPRGSSVQPESPQEE 535
Score = 31.8 bits (72), Expect = 1.3
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 19/80 (23%)
Query: 344 LEEEEEEEEEEEEEEEE-------------------EEEEEEEEEEEEEEEEEEEEEEEE 384
EEEE E+EEEEEE E EE EE+ E E E +
Sbjct: 461 ESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQ 520
Query: 385 EEEEEEEEEEEEEEKELENE 404
+ + E +E+ L+ E
Sbjct: 521 QPRGSSVQPESPQEEPLQPE 540
Score = 31.4 bits (71), Expect = 2.0
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
NG EEE E E + + EE EE+ E E E ++ + E +EE +
Sbjct: 480 NGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQEEPLQ 538
Score = 30.7 bits (69), Expect = 3.5
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G + EE EE+ E E E ++ + E +EE + E + E E
Sbjct: 492 GDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQEEPLQPESMDAESVGEES 551
Query: 403 NE 404
+E
Sbjct: 552 DE 553
Score = 29.5 bits (66), Expect = 7.2
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+G EE EE+ E E E ++ + E +EE + E + E E+
Sbjct: 493 DGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESD 552
Query: 402 EN 403
E
Sbjct: 553 EE 554
Score = 29.1 bits (65), Expect = 8.3
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EE+ E E E ++ + E +EE + E + E +E + E
Sbjct: 497 EEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESDEE 554
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 60.9 bits (148), Expect = 2e-10
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 17/107 (15%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEKE 400
+EE+ +E E +EE++ +EE+ E EE E+EE E+ EE E + EE ++E +EE K+
Sbjct: 13 MEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKK 72
Query: 401 LENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV 447
LENE L++ L+RT E Y+ YRK+ +E+ +
Sbjct: 73 LENE----LEALKDRLLRTVAE----------YDNYRKRTAKEKEGI 105
Score = 47.8 bits (114), Expect = 4e-06
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+E ++ + E EE+ +E E +EE++ +EE+ E EE E+EE E E+
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESN 52
Score = 39.4 bits (92), Expect = 0.002
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNM 421
E+E ++ + E EE+ +E E +EE++ +EE+ E E+ + E D + E+ I +
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIE-EL 59
Query: 422 EDMREK 427
+D K
Sbjct: 60 KDENNK 65
Score = 33.6 bits (77), Expect = 0.21
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
F +E+EE E+ EE E + EE ++E + +EE ++ E E E
Sbjct: 36 FEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEA 79
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 60.9 bits (148), Expect = 2e-10
Identities = 25/58 (43%), Positives = 45/58 (77%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
GL EEEE+ +E+ E++ +E E E+ +EE+E++EEEEEEEEEE+E+ ++++++ +
Sbjct: 140 GLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 59.8 bits (145), Expect = 5e-10
Identities = 24/63 (38%), Positives = 47/63 (74%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
F EE+ +E+ E++ +E E E+ +EE+E++EEEEEEEEEE+E+ ++++++++++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDYN 201
Query: 401 LEN 403
EN
Sbjct: 202 AEN 204
Score = 56.3 bits (136), Expect = 6e-09
Identities = 23/57 (40%), Positives = 42/57 (73%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEEE+ +E+ E++ +E E E+ +EE+E++EEEEEEEEEE+E+ ++ + +++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 54.8 bits (132), Expect = 2e-08
Identities = 21/58 (36%), Positives = 43/58 (74%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+ E++ +E E E+ +EE+E++EEEEEEEEEE+E+ ++++++++++ E +N
Sbjct: 151 EKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDYNAENYFDN 208
Score = 54.0 bits (130), Expect = 4e-08
Identities = 24/59 (40%), Positives = 42/59 (71%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
EEEE+ +E+ E++ +E E E+ +EE+E++EEEEEEEEEE+E+ + +++ D+
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDY 200
Score = 47.1 bits (112), Expect = 9e-06
Identities = 16/39 (41%), Positives = 31/39 (79%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
K E+ +EE+E++EEEEEEEEEE+E+ ++++++++
Sbjct: 159 KLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 63.0 bits (154), Expect = 2e-10
Identities = 30/57 (52%), Positives = 50/57 (87%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E+ E++ EEE++E++++ +++EEEEEEE+E++EEE+EEEEEE EEE+EEEE++
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 63.0 bits (154), Expect = 2e-10
Identities = 31/56 (55%), Positives = 50/56 (89%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E++ EEE++E++++ +++EEEEEEE+E++EEE+EEEEEE EEE+EEEEE++K+
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 62.6 bits (153), Expect = 3e-10
Identities = 31/55 (56%), Positives = 48/55 (87%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E++ EEE++E++++ +++EEEEEEE+E++EEE+EEEEEE EEE+EEEEE+K
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 62.6 bits (153), Expect = 3e-10
Identities = 31/57 (54%), Positives = 49/57 (85%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E++ EEE++E++++ +++EEEEEEE+E++EEE+EEEEEE EEE+EEEEEK+
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 62.2 bits (152), Expect = 4e-10
Identities = 29/61 (47%), Positives = 48/61 (78%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+ E++ EEE++E++++ +++EEEEEEE+E++EEE+EEEEEE EEE+E+E E +
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 406 H 406
Sbjct: 475 K 475
Score = 61.9 bits (151), Expect = 4e-10
Identities = 28/63 (44%), Positives = 50/63 (79%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+++ E+ E++ EEE++E++++ +++EEEEEEE+E++EEE+EEEEEE EEE++E
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469
Query: 402 ENE 404
E +
Sbjct: 470 EEK 472
Score = 59.9 bits (146), Expect = 2e-09
Identities = 30/58 (51%), Positives = 49/58 (84%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EEE++E++++ +++EEEEEEE+E++EEE+EEEEEE EEE+EEEEE+++++ L
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQATL 479
Score = 58.0 bits (141), Expect = 7e-09
Identities = 25/66 (37%), Positives = 50/66 (75%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
++ G ++ ++ ++ E+ E++ EEE++E++++ +++EEEEEEE+E++EEE+EEEE
Sbjct: 400 EFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Query: 399 KELENE 404
+E E E
Sbjct: 460 EEAEEE 465
Score = 56.1 bits (136), Expect = 3e-08
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 14/76 (18%)
Query: 343 GLEEEEEE--------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
L EEE E E+ E++ EEE++E++++ +++EEEEEEE+E++E
Sbjct: 393 ELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452
Query: 389 EEEEEEEEEEKELENE 404
EE+EEEEEE +E + E
Sbjct: 453 EEKEEEEEEAEEEKEE 468
Score = 43.8 bits (104), Expect = 2e-04
Identities = 27/39 (69%), Positives = 36/39 (92%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
F G ++EEEEEEE+E++EEE+EEEEEE EEE+EEEEE++
Sbjct: 435 FAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 43.4 bits (103), Expect = 3e-04
Identities = 19/62 (30%), Positives = 40/62 (64%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE EEE E ++ ++ ++ E+ E++ EEE++E++++ +++EEEEEE++ +
Sbjct: 391 FLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Query: 403 NE 404
E
Sbjct: 451 KE 452
Score = 41.8 bits (99), Expect = 0.001
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
+ +EEEEEEE+E++EEE+EEEEEE EEE+EEEEE++
Sbjct: 434 AFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 35.3 bits (82), Expect = 0.088
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ L E EEE E ++ ++ ++ E+ E++ EEE++E++++ +++EE
Sbjct: 383 ELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442
Query: 399 KELE 402
+E E
Sbjct: 443 EEEE 446
Score = 33.4 bits (77), Expect = 0.43
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEE E ++ ++ ++ E+ E++ EEE++E++++ +K+ E E
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEE 445
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 62.4 bits (152), Expect = 3e-10
Identities = 38/90 (42%), Positives = 45/90 (50%), Gaps = 32/90 (35%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEE--------------------------------EE 371
LEEEEEEEEEEE E +E EE + E E+
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPEQ 346
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++EEEE+E+EEEEEEEEE EE E EE L
Sbjct: 347 KDEEEEQEDEEEEEEEEEPEEPEPEEGPPL 376
Score = 60.8 bits (148), Expect = 9e-10
Identities = 37/89 (41%), Positives = 45/89 (50%), Gaps = 31/89 (34%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------------------------ 372
GL + EEEEEEEEEEE E +E EE + E
Sbjct: 283 GLYQLEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWV 342
Query: 373 -EEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+++EEEE+E+EEEEEEEEE EE E E
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPE 371
Score = 53.1 bits (128), Expect = 3e-07
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 374
C + N +++EEEE+E+EEEEEEEEE EE E EE
Sbjct: 339 CTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 42.7 bits (101), Expect = 5e-04
Identities = 28/44 (63%), Positives = 30/44 (68%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E E EEEEEEEE E +EE+E EEEEEEE EE KE E G
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGTG 207
Score = 42.0 bits (99), Expect = 8e-04
Identities = 27/43 (62%), Positives = 30/43 (69%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGT 206
Score = 42.0 bits (99), Expect = 9e-04
Identities = 26/38 (68%), Positives = 29/38 (76%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
L E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 167 LREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E E E EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 38.9 bits (91), Expect = 0.008
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
+ Y + + G EEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 157 QKDYYVAEVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 38.1 bits (89), Expect = 0.013
Identities = 24/38 (63%), Positives = 27/38 (71%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
EEEEEEEE E +EE+E EEEEEEE EE +EEE
Sbjct: 167 LREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 32.0 bits (73), Expect = 0.96
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E E E EEEEEEEE E +EE+E E E E
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEE 195
Score = 30.0 bits (68), Expect = 3.9
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E E E EEEEEEEE E +EE+E +E E E
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEP 196
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 58.3 bits (141), Expect = 5e-10
Identities = 30/57 (52%), Positives = 46/57 (80%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E++E++EEEEEE+EEE EE E+ E+EEE E+EEEEEE+EE+ + ++ EK+ N+
Sbjct: 45 DEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNIND 101
Score = 57.2 bits (138), Expect = 1e-09
Identities = 31/60 (51%), Positives = 49/60 (81%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E E+ ++E++E++EEEEEE+EEE EE E+ E+EEE E+EEEEEE+EE+ + K++E +
Sbjct: 38 KENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKK 97
Score = 56.4 bits (136), Expect = 3e-09
Identities = 29/60 (48%), Positives = 46/60 (76%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++E++EEEEEE+EEE EE E+ E+EEE E+EEEEEE+EE+ + ++ E++ ++ N
Sbjct: 46 EKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNS 105
Score = 55.2 bits (133), Expect = 5e-09
Identities = 28/58 (48%), Positives = 45/58 (77%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E++E++EEEEEE+EEE EE E+ E+EEE E+EEEEEE+EE+ + ++ E++ +
Sbjct: 45 DEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDI 102
Score = 55.2 bits (133), Expect = 5e-09
Identities = 28/54 (51%), Positives = 44/54 (81%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+E++E++EEEEEE+EEE EE E+ E+EEE E+EEEEEE+EE+ + ++ E++
Sbjct: 44 KDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKK 97
Score = 51.8 bits (124), Expect = 8e-08
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 321 VPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
P P +K + + ++E+ +E E+ ++E++E++EEEEEE+EEE EE E+
Sbjct: 8 APEKKPEEEKKDENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPED 67
Query: 381 EEEEEEEEEEEEEEEEEEKELENE 404
E+EEE E+EEEEEE+E++ +
Sbjct: 68 IEDEEEIVEDEEEEEEDEEDNVDL 91
Score = 50.6 bits (121), Expect = 2e-07
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EEEEEE+EEE EE E+ E+EEE E+EEEEEE+EE+ + ++ E++ + ++
Sbjct: 51 DEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDN 110
Score = 46.8 bits (111), Expect = 5e-06
Identities = 31/94 (32%), Positives = 54/94 (57%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
++E+ +E E+ ++E++E++EEEEEE+EEE EE E+ E+EEE E++E E E D V L
Sbjct: 32 DKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDL 91
Query: 413 REMLIRTNMEDMREKTHCRHYELYRKKRLEEESN 446
+++ + + L K + E +
Sbjct: 92 KDIEKKNINDIFNSTQDDNAQNLISKNYKKNEKS 125
Score = 46.4 bits (110), Expect = 8e-06
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EEE+EEE EE E+ E+EEE E+EEEEEE+EE+ + ++ E++ + ++ +N
Sbjct: 55 EEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQN 113
Score = 42.2 bits (99), Expect = 2e-04
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+EEE EE E+ E+EEE E+EEEEEE+EE+ + ++ E++ + +++ + L
Sbjct: 58 DEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNL 114
Score = 42.2 bits (99), Expect = 2e-04
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE EE E+ E+EEE E+EEEEEE+EE+ + ++ E++ + +++ + +
Sbjct: 59 EEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNLISKN 118
Score = 38.3 bits (89), Expect = 0.004
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ + +EE E+ E+EEE E+EEEEEE+EE+ + ++ E++ + +++
Sbjct: 55 EEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDN 110
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 60.5 bits (147), Expect = 1e-09
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE +E+E+EEEE+ +E EEEE E+ EEE + E+ E + + E + +
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESAS 426
Query: 405 G 405
Sbjct: 427 D 427
Score = 60.5 bits (147), Expect = 1e-09
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE +E+E+EEEE+ +E EEEE E+ EEE + E+ E + + E + +KE
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKE 423
Score = 59.4 bits (144), Expect = 3e-09
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ + D F ++E+E+EEEE+ +E EEEE E+ EEE + E+ E +
Sbjct: 354 MRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVG 413
Query: 388 EEEEEEEEEEEKE 400
+ E + ++E
Sbjct: 414 SDSESKADKESAS 426
Score = 58.6 bits (142), Expect = 5e-09
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE +E+E+EEEE+ +E EEEE E+ EEE + E+ E + + E K +
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKES 424
Score = 58.2 bits (141), Expect = 5e-09
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +E+E+EEEE+ +E EEEE E+ EEE + E+ E + + E + +++ +
Sbjct: 369 EVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDS 428
Score = 57.8 bits (140), Expect = 7e-09
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ + EE +E+E+EEEE+ +E EEEE E+ EEE + E+ E + + + +
Sbjct: 362 LDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKAD 421
Query: 404 EG 405
+
Sbjct: 422 KE 423
Score = 57.1 bits (138), Expect = 1e-08
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+E+EEEE+ +E EEEE E+ EEE + E+ E + + E + ++E +++
Sbjct: 370 VDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
Query: 405 G 405
Sbjct: 430 S 430
Score = 56.7 bits (137), Expect = 2e-08
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ + + EE +E+E+EEEE+ +E EEEE E+ EEE + E+ E +
Sbjct: 356 DKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSD 415
Query: 402 ENEGH 406
Sbjct: 416 SESKA 420
Score = 55.9 bits (135), Expect = 3e-08
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+E+EEEE+ +E EEEE E+ EEE + E+ E + + E + ++E + ++E
Sbjct: 372 EDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 55.9 bits (135), Expect = 4e-08
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+EEEE+ +E EEEE E+ EEE + E+ E + + E + ++E + +
Sbjct: 373 DEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
Score = 52.8 bits (127), Expect = 3e-07
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLRE 414
+ + EE +E+E+EEEE+ +E EEEE E+ EEE + E+ + + G K +
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADK 422
Query: 415 M 415
Sbjct: 423 E 423
Score = 51.3 bits (123), Expect = 9e-07
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ E + ++ + + EE +E+E+EEEE+ +E EEEE E+ EEE + E+
Sbjct: 348 STKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSE 407
Query: 402 ENE 404
+
Sbjct: 408 SSS 410
Score = 50.9 bits (122), Expect = 1e-06
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+E + ++ + + EE +E+E+EEEE+ +E EEEE E+ EEE + +E +
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408
Query: 407 CDFVKLREMLIRTNMED 423
V
Sbjct: 409 SSDVGSDSESKADKESA 425
Score = 50.5 bits (121), Expect = 1e-06
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E + ++ + + EE +E+E+EEEE+ +E EEEE E+ EEE + E+ E+
Sbjct: 350 KESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESS 409
Query: 405 G 405
Sbjct: 410 S 410
Score = 50.5 bits (121), Expect = 2e-06
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E + ++ + + EE +E+E+EEEE+ +E EEEE E+ EEE + ++ +
Sbjct: 347 PSTKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSS 406
Query: 404 EGHCD 408
E D
Sbjct: 407 ESSSD 411
Score = 46.7 bits (111), Expect = 3e-05
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+E EEEE E+ EEE + E+ E + + E + ++E + + E
Sbjct: 380 QRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 35.5 bits (82), Expect = 0.081
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
G + EEE + E+ E + + E + ++E + + E
Sbjct: 389 EGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 57.7 bits (140), Expect = 1e-09
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+ E+ EEE EE E EE E+E EEE EEE E E +EE+ + ELE +
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAK 52
Score = 57.7 bits (140), Expect = 1e-09
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE+ E+ EEE EE E EE E+E EEE EEE E E +EE+ + E E + ELE
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58
Score = 57.3 bits (139), Expect = 2e-09
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE+ E+ EEE EE E EE E+E EEE EEE E E +EE+ + E E + +E E
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELE 57
Score = 56.9 bits (138), Expect = 3e-09
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E+ EEE EE E EE E+E EEE EEE E E +EE+ + E E + +E EE+ L
Sbjct: 5 NEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYL 61
Score = 55.4 bits (134), Expect = 8e-09
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+ E+ EEE EE E EE E+E EEE EEE E E +EE+ + E E K E E
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELE 57
Score = 53.8 bits (130), Expect = 3e-08
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLRE 414
EE+ E+ EEE EE E EE E+E EEE EEE E E +EE+ K E E D ++ R
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERY 60
Query: 415 MLIRTNMEDMREKT 428
+ ++ + E+ + +
Sbjct: 61 LRLQADFENYKRRI 74
Score = 51.5 bits (124), Expect = 2e-07
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+EEE EE E EE E+E EEE EEE E E +EE+ + E E + +E EE
Sbjct: 6 EQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58
Score = 50.8 bits (122), Expect = 3e-07
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E EE E EE E+E EEE EEE E E +EE+ + E E + +E EE + + EN
Sbjct: 11 EVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLRLQADFEN 69
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 57.0 bits (138), Expect = 2e-09
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E+EE EE+E++E +EEE + ++E++EE + EEE+ +EEE + E E E + E
Sbjct: 10 GEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDRE 69
Query: 403 NE 404
E
Sbjct: 70 FE 71
Score = 45.4 bits (108), Expect = 2e-05
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ +E +EEE + ++E++EE + EEE+ +EEE + E E E + E E
Sbjct: 19 EDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFE 71
Score = 38.5 bits (90), Expect = 0.003
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++ EE+EE EE+E++E +EEE + ++E++E+ E
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEE 46
Score = 38.5 bits (90), Expect = 0.004
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E ++ EE+EE EE+E++E +EEE + ++E++ E++
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDS 44
Score = 32.7 bits (75), Expect = 0.33
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
E E ++ EE+EE EE+E++E +EEE ++E +
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEES 42
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 59.3 bits (144), Expect = 2e-09
Identities = 23/62 (37%), Positives = 43/62 (69%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE+ +EEE +++E E+ E +++++EEEE E EE+E+ ++E E + E ++E E + E+
Sbjct: 75 LEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSED 134
Query: 404 EG 405
E
Sbjct: 135 EE 136
Score = 58.9 bits (143), Expect = 2e-09
Identities = 22/63 (34%), Positives = 44/63 (69%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
GLE +++++EEEE E EE+E+ ++E E + E ++E E + E+EEE++E ++ +++
Sbjct: 90 QGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDS 149
Query: 402 ENE 404
+ E
Sbjct: 150 DEE 152
Score = 58.9 bits (143), Expect = 2e-09
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+ E +++++EEEE E EE+E+ ++E E + E ++E E + E+EEE++E K+
Sbjct: 89 EQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKK 144
Score = 58.9 bits (143), Expect = 3e-09
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E ++E E + E+EEE++E ++ +E+ +EE EE+EEE EEEE E E+EK E
Sbjct: 117 EWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASE 176
Query: 403 NEGH-----CDFVKLRE 414
DF K++E
Sbjct: 177 LATTRILTPADFAKIQE 193
Score = 58.5 bits (142), Expect = 3e-09
Identities = 21/58 (36%), Positives = 39/58 (67%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E+ E +++++EEEE E EE+E+ ++E E + E ++E E + E+EEE++E +
Sbjct: 87 EAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKK 144
Score = 58.5 bits (142), Expect = 3e-09
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++E E+ E +++++EEEE E EE+E+ ++E E + E ++E E + E+EEE+ E
Sbjct: 82 ERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEA 141
Query: 402 ENE 404
+
Sbjct: 142 AKK 144
Score = 58.1 bits (141), Expect = 4e-09
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+E+ ++E E + E ++E E + E+EEE++E ++ +E+ +EE EE+EEE E E
Sbjct: 107 EEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEE 166
Score = 57.7 bits (140), Expect = 6e-09
Identities = 19/61 (31%), Positives = 41/61 (67%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +++++EEEE E EE+E+ ++E E + E ++E E + E+EEE++E ++ + +++
Sbjct: 91 GLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSD 150
Query: 405 G 405
Sbjct: 151 E 151
Score = 57.4 bits (139), Expect = 7e-09
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+++E E+ E +++++EEEE E EE+E+ ++E E + E ++E E + E+EEEK+
Sbjct: 81 EERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKD 139
Score = 56.6 bits (137), Expect = 1e-08
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ ++E E + E ++E E + E+EEE++E ++ +E+ +EE EE+EEE EE+E E E
Sbjct: 111 DSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAE 170
Score = 56.2 bits (136), Expect = 2e-08
Identities = 21/66 (31%), Positives = 42/66 (63%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K+ +++E E+ E +++++EEEE E EE+E+ ++E E + E ++E E + E+EE
Sbjct: 77 KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEE 136
Query: 399 KELENE 404
++ E
Sbjct: 137 EKDEAA 142
Score = 55.4 bits (134), Expect = 3e-08
Identities = 22/60 (36%), Positives = 40/60 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+ ++E E + E ++E E + E+EEE++E ++ +E+ +EE EE+EEE +E E E
Sbjct: 109 DEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAE 168
Score = 55.0 bits (133), Expect = 4e-08
Identities = 23/62 (37%), Positives = 42/62 (67%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
GLE E+ +EEE +++E E+ E +++++EEEE E EE+E+ ++E E + E ++E E
Sbjct: 71 GLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESS 130
Query: 403 NE 404
+
Sbjct: 131 DS 132
Score = 55.0 bits (133), Expect = 4e-08
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E E + E ++E E + E+EEE++E ++ +E+ +EE EE+EEE EEEE E E E
Sbjct: 113 DDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 45.8 bits (109), Expect = 4e-05
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE + E E+ +EEE +++E E+ E +++++EEEE E EE+E+ ++E E +
Sbjct: 62 EEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDV 121
Query: 405 GH 406
Sbjct: 122 ES 123
Score = 36.6 bits (85), Expect = 0.032
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
GLE E++ EEE + E E+ +EEE +++E E+ E +++++EEEE E +E E
Sbjct: 51 GLEAGEKKGYGEEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDE 110
Query: 403 NE 404
+
Sbjct: 111 DS 112
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 57.0 bits (138), Expect = 2e-09
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ E EEEE EE ++ EE+ E E +EEEE EEE E+++EEEE +E EE+ +E++E E
Sbjct: 19 QQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKL 78
Score = 55.9 bits (135), Expect = 6e-09
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 14/91 (15%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEE 393
LEE+ E E +EEEE EEE E+++EEEE +E EE+ +E+EE EEE ++
Sbjct: 34 LEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLS 93
Query: 394 EEEEEKELENEGHCDFVKLREMLIRTNMEDM 424
+EE EL E +++KL+++ N+E++
Sbjct: 94 ADEESNEL-LEDFINYIKLKKV---VNLEEL 120
Score = 55.1 bits (133), Expect = 1e-08
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EEE EE ++ EE+ E E +EEEE EEE E+++EEEE +E EE+ +E+EE E+ K
Sbjct: 25 EEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKS 80
Score = 54.7 bits (132), Expect = 1e-08
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE++ ++ E EEEE EE ++ EE+ E E +EEEE EEE E+++EEEE +E E++
Sbjct: 11 LEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARK 70
Query: 404 EGHCDFVKLREMLI 417
E ++ KL+ +
Sbjct: 71 E-QEEYEKLKSSFV 83
Score = 47.0 bits (112), Expect = 5e-06
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
G ++ + EE++ ++ E EEEE EE ++ EE+ E E +EEEE EEE E+++EEE+
Sbjct: 3 IGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERK 62
Query: 402 ENE 404
E E
Sbjct: 63 ERE 65
Score = 43.5 bits (103), Expect = 1e-04
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++ + EE++ ++ E EEEE EE ++ EE+ E E +EEEE EEE E++++E E +
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63
Query: 406 H 406
Sbjct: 64 R 64
Score = 31.2 bits (71), Expect = 0.98
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTN 420
++ + EE++ ++ E EEEE EE ++ EE+ E E++ E E + K +E R
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63
Query: 421 MEDMREKTH 429
E+ K
Sbjct: 64 REEQARKEQ 72
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 57.4 bits (139), Expect = 3e-09
Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 344 LEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
LEEE EE+E EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE EKE
Sbjct: 18 LEEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKE 77
Query: 401 LENE 404
L+ E
Sbjct: 78 LQRE 81
Score = 51.6 bits (124), Expect = 3e-07
Identities = 27/58 (46%), Positives = 42/58 (72%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E + EE +++K
Sbjct: 31 YLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKK 88
Score = 51.6 bits (124), Expect = 3e-07
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
D ++ L EEEE++EE E EEEEEEEE + + ++ E++E E ++EEE E+E + EE
Sbjct: 25 DEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERL 84
Query: 397 EEK 399
++K
Sbjct: 85 KKK 87
Score = 32.0 bits (73), Expect = 0.84
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
EEE EE+E EEEE++EE E EE+E E E DF
Sbjct: 19 EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDF 58
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 56.3 bits (136), Expect = 6e-09
Identities = 28/59 (47%), Positives = 42/59 (71%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EEE+E E++E++ + E+E+EE EEE EEE+EE +E E+E EE+ E EKE+ N
Sbjct: 66 KEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITN 124
Score = 54.7 bits (132), Expect = 2e-08
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE +EEE+E E++E++ + E+E+EE EEE EEE+EE +E E+E EEK N
Sbjct: 61 EIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNV 118
Score = 50.9 bits (122), Expect = 4e-07
Identities = 27/60 (45%), Positives = 43/60 (71%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+E ++ +++E E EE +EEE+E E++E++ + E+E+EE EEE EEE+EE ENE
Sbjct: 48 EQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107
Score = 50.1 bits (120), Expect = 7e-07
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E ++ +++E E EE +EEE+E E++E++ + E+E+EE EEE EEE+EE E E E
Sbjct: 50 EAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Score = 50.1 bits (120), Expect = 8e-07
Identities = 26/61 (42%), Positives = 42/61 (68%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ +++E E EE +EEE+E E++E++ + E+E+EE EEE EEE+EE +E E E E
Sbjct: 52 KKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETE 111
Query: 405 G 405
Sbjct: 112 E 112
Score = 48.2 bits (115), Expect = 3e-06
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E++E++ + E+E+EE EEE EEE+EE +E E+E EE+ E E+E
Sbjct: 71 EAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 47.8 bits (114), Expect = 4e-06
Identities = 23/59 (38%), Positives = 41/59 (69%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+E ++ +++E E EE +EEE+E E++E++ + E+E+EE EEE EEE E ++
Sbjct: 46 ADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSD 104
Score = 47.0 bits (112), Expect = 9e-06
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E++E++ + E+E+EE EEE EEE+EE +E E+E EE+ E E+E K
Sbjct: 74 NSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWK 128
Score = 46.3 bits (110), Expect = 1e-05
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E++E++ + E+E+EE EEE EEE+EE +E E+E EE+ E E+E
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 44.7 bits (106), Expect = 5e-05
Identities = 21/60 (35%), Positives = 41/60 (68%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ +E+E ++ +++E E EE +EEE+E E++E++ + E+E+EE EEE +E + E
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Score = 43.6 bits (103), Expect = 1e-04
Identities = 20/56 (35%), Positives = 38/56 (67%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ +E+E ++ +++E E EE +EEE+E E++E++ + E+E+EE E ENE
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENE 96
Score = 43.2 bits (102), Expect = 2e-04
Identities = 20/58 (34%), Positives = 39/58 (67%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ +E+E ++ +++E E EE +EEE+E E++E++ + E+E+EE E+E E E
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEE 98
Score = 40.5 bits (95), Expect = 0.001
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
G E+E+EE EEE EEE+EE +E E+E EE+ E E+E
Sbjct: 81 KGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 53.8 bits (129), Expect = 1e-08
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E + +E+ +E E + +E +EEEE +E +E +E + E EE +EEE+EE E
Sbjct: 75 EAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 53.0 bits (127), Expect = 2e-08
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE E + +E+ +E E + +E +EEEE +E +E +E + E EE +EEE++E E
Sbjct: 74 EEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 52.6 bits (126), Expect = 2e-08
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E + +E+ +E E + +E +EEEE +E +E +E + E EE +EE++ E E
Sbjct: 71 EAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 51.5 bits (123), Expect = 6e-08
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E EE E + +E+ +E E + +E +EEEE +E +E +E + E EE +E+E E
Sbjct: 70 AEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDE 127
Score = 51.1 bits (122), Expect = 8e-08
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ +E+ +E E + +E +EEEE +E +E +E + E EE +EEE+EE E
Sbjct: 78 AADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 50.7 bits (121), Expect = 1e-07
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E + +E+ +E E + +E +EEEE +E +E +E + E EE E E+E
Sbjct: 68 AAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDE 127
Score = 46.5 bits (110), Expect = 4e-06
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E+ E EE E + +E+ +E E + +E +EEEE +E +E E +
Sbjct: 56 GRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEAD 115
Query: 403 NE 404
E
Sbjct: 116 AE 117
Score = 46.1 bits (109), Expect = 5e-06
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E + +E+ +E E + +E +EEEE +E +E +E + E E
Sbjct: 61 GPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAE 119
Score = 45.7 bits (108), Expect = 6e-06
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E+ E EE E + +E+ +E E + +E +EEEE +E E +E
Sbjct: 54 EAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADE 113
Query: 405 GHCD 408
+
Sbjct: 114 ADAE 117
Score = 43.8 bits (103), Expect = 3e-05
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E+ E EE E + +E+ +E E + +E +EEEE E +E
Sbjct: 51 EWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDE 109
Score = 41.9 bits (98), Expect = 1e-04
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E + +E +EEEE +E +E +E + E EE +EEE+EE E
Sbjct: 87 EAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 37.2 bits (86), Expect = 0.005
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E + E E E+ E EE E + +E+ +E E + +E + E E
Sbjct: 46 EARDLEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEET 103
Score = 36.5 bits (84), Expect = 0.009
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
E + E E E+ E EE E + +E+ +E E + E + E D
Sbjct: 46 EARDLEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETD 104
Score = 34.9 bits (80), Expect = 0.037
Identities = 16/70 (22%), Positives = 26/70 (37%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
F D K + E + E E E+ E EE E + +E+ +E E
Sbjct: 32 FVDSKCEKNYDLGREARDLEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEA 91
Query: 395 EEEEKELENE 404
+ ++ E E
Sbjct: 92 DAADEADEEE 101
Score = 28.4 bits (63), Expect = 5.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEE 371
E +E +E + E EE +EEE+EE E
Sbjct: 103 TDEAVDETADEADAEAEEADEEEDEEAEA 131
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 55.4 bits (134), Expect = 3e-08
Identities = 24/47 (51%), Positives = 38/47 (80%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
G +EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 273 GGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 53.9 bits (130), Expect = 1e-07
Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E +K
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 53.5 bits (129), Expect = 1e-07
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 53.5 bits (129), Expect = 1e-07
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 53.5 bits (129), Expect = 1e-07
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 53.5 bits (129), Expect = 1e-07
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 53.5 bits (129), Expect = 1e-07
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 53.5 bits (129), Expect = 1e-07
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 53.5 bits (129), Expect = 1e-07
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 53.5 bits (129), Expect = 1e-07
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 53.5 bits (129), Expect = 1e-07
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 52.7 bits (127), Expect = 3e-07
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E +
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 52.4 bits (126), Expect = 3e-07
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
G EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 273 GGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 51.6 bits (124), Expect = 6e-07
Identities = 22/46 (47%), Positives = 35/46 (76%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEEE+ + ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 47.0 bits (112), Expect = 2e-05
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEE+E ++EG
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEG 317
Score = 46.6 bits (111), Expect = 2e-05
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+EE+ EE E+ EEEEEE++ E E+E+EE+E+EEEE++ +
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 45.4 bits (108), Expect = 5e-05
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 282 LLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 30.4 bits (69), Expect = 3.2
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLRE 414
+EE+ EE E+ EEEEEE++ E E E+E D + +
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEED 313
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 55.9 bits (135), Expect = 4e-08
Identities = 29/60 (48%), Positives = 47/60 (78%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E+E +EEEEEE+EE++EEEE+ ++EEE +EEEE+EE++++ ++ +E E EL N+
Sbjct: 30 EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNK 89
Score = 55.5 bits (134), Expect = 5e-08
Identities = 28/58 (48%), Positives = 46/58 (79%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+E E+E +EEEEEE+EE++EEEE+ ++EEE +EEEE+EE++++ ++ +E E E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Score = 55.2 bits (133), Expect = 7e-08
Identities = 28/58 (48%), Positives = 46/58 (79%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+E E+E +EEEEEE+EE++EEEE+ ++EEE +EEEE+EE++++ ++ +E E E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Score = 50.9 bits (122), Expect = 1e-06
Identities = 25/55 (45%), Positives = 42/55 (76%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+EEEEEE+EE++EEEE+ ++EEE +EEEE+EE++++ ++ +E E E + K
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 42.8 bits (101), Expect = 5e-04
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+E E+E +EEEEEE+EE++EEEE+ ++EEE + E E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEK 67
Score = 37.4 bits (87), Expect = 0.023
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
GL +E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 492 GLSIDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.090
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 34.0 bits (78), Expect = 0.29
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E+EE EEE+EE E E E EE+ E+ + +E++
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEEVD 529
Score = 32.8 bits (75), Expect = 0.54
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
EE+ ++EEE +EEEE+EE++++ ++ +E E E
Sbjct: 48 KEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 29.7 bits (67), Expect = 5.2
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+EE EEE+EE E E E EE+ ++ + E
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKME 526
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 54.8 bits (132), Expect = 4e-08
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE +E E + E+ E+E++ +E+E++++ EEEE + E+ + EE E E+E
Sbjct: 210 EELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEME 267
Score = 52.9 bits (127), Expect = 2e-07
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E E + E+ E+E++ +E+E++++ EEEE + E+ + EE E E E E
Sbjct: 213 GDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEAS 272
Query: 403 NEG 405
+
Sbjct: 273 ADD 275
Score = 50.6 bits (121), Expect = 1e-06
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
L +E E + E+ E+E++ +E+E++++ EEEE + E+ + EE E E
Sbjct: 212 LGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266
Score = 49.0 bits (117), Expect = 3e-06
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E +E E + E+ E+E++ +E+E++++ EEEE + E+ + EE E
Sbjct: 210 EELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMES 263
Score = 48.7 bits (116), Expect = 5e-06
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+ E+E++ +E+E++++ EEEE + E+ + EE E E E E + +
Sbjct: 220 DSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDS 279
Query: 405 G 405
Sbjct: 280 D 280
Score = 46.0 bits (109), Expect = 3e-05
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N E++ +E+E++++ EEEE + E+ + EE E E E E ++ + +
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282
Score = 45.6 bits (108), Expect = 4e-05
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+E++ +E+E++++ EEEE + E+ + EE E E E E ++ + ++
Sbjct: 223 DNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282
Score = 45.2 bits (107), Expect = 5e-05
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E++ +E+E++++ EEEE + E+ + EE E E E E ++ + +
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282
Score = 44.4 bits (105), Expect = 9e-05
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE +E E + E+ E+E++ +E+E++++ EEEE + E+ + +E
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSE 259
Score = 35.9 bits (83), Expect = 0.053
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ EE +E E + E+ E+E++ +E+E++++ E E G
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESG 245
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 55.9 bits (135), Expect = 5e-08
Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
F+ LE E+ E ++EEEE+EEEEEEE+E+E +E ++EE EE++ E + E+ +
Sbjct: 376 FSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNSS 435
Query: 401 L 401
L
Sbjct: 436 L 436
Score = 52.1 bits (125), Expect = 8e-07
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
Y E E+ E ++EEEE+EEEEEEE+E+E +E ++EE EE++ E + E+
Sbjct: 370 DYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 51.7 bits (124), Expect = 9e-07
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E E+ E ++EEEE+EEEEEEE+E+E +E ++EE EE++ E + E
Sbjct: 373 LDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYE 428
Score = 51.7 bits (124), Expect = 9e-07
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E E+ E ++EEEE+EEEEEEE+E+E +E ++EE EE++ E K +++G
Sbjct: 373 LDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDG 432
Score = 51.7 bits (124), Expect = 1e-06
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
L +F + + E ++EEEE+EEEEEEE+E+E +E ++EE EE++ E + E+
Sbjct: 373 LDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 51.3 bits (123), Expect = 1e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ + E E+ E ++EEEE+EEEEEEE+E+E +E ++EE EE++ E + E
Sbjct: 372 ILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYE 428
Score = 50.9 bits (122), Expect = 2e-06
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E+ E ++EEEE+EEEEEEE+E+E +E ++EE EE++ E + E N
Sbjct: 377 SALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGN 433
Score = 49.4 bits (118), Expect = 5e-06
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E E++ + E E+ E ++EEEE+EEEEEEE+E+E +E ++EE +E +
Sbjct: 364 AKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDV 423
Query: 404 EG 405
E
Sbjct: 424 ES 425
Score = 48.2 bits (115), Expect = 1e-05
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ +E E++ + E E+ E ++EEEE+EEEEEEE+E+E +E +++E E +
Sbjct: 362 TKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEED 421
Score = 45.5 bits (108), Expect = 9e-05
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L +++ + +E E++ + E E+ E ++EEEE+EEEEEEE+E+E ++ +
Sbjct: 355 TLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSD 414
Query: 403 NEGH 406
+E
Sbjct: 415 DEEF 418
Score = 43.6 bits (103), Expect = 3e-04
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 329 DKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
D + ++ F + L E +++ + +E E++ + E E+ E ++EEEE+E
Sbjct: 337 DADAFTHFQEGFTQALWETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDE 396
Query: 389 EEEEEEEEEE 398
EEEEEE+E+E
Sbjct: 397 EEEEEEDEDE 406
Score = 41.7 bits (98), Expect = 0.001
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E +++ + +E E++ + E E+ E ++EEEE+EEEEEEE+E+E
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEG 407
Score = 40.9 bits (96), Expect = 0.002
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E +++ + +E E++ + E E+ E ++EEEE+EEEEEEE+E E ++ H
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413
Query: 408 D 408
D
Sbjct: 414 D 414
Score = 40.5 bits (95), Expect = 0.003
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E +++ + +E E++ + E E+ E ++EEEE+EEEEEEE+E++ E
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413
Query: 407 CD 408
D
Sbjct: 414 DD 415
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 52.8 bits (127), Expect = 6e-08
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++EEEE EEEEE+ EEE EEEEEE + EEEEE+ + +E EE +EL E
Sbjct: 74 LEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREE 132
Score = 52.0 bits (125), Expect = 8e-08
Identities = 30/58 (51%), Positives = 38/58 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE E++EEEE EEEEE+ EEE EEEEEE + EEEEE+ + +E EE+E
Sbjct: 71 LELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREE 128
Score = 52.0 bits (125), Expect = 1e-07
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ L+ EE E E++EEEE EEEEE+ EEE EEEEEE + EEEEE+ + ++
Sbjct: 61 ESSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDEL 120
Query: 401 LENE 404
E
Sbjct: 121 PTPE 124
Score = 50.9 bits (122), Expect = 2e-07
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EEEE EEEEE+ EEE EEEEEE + EEEEE+ + +E EE EE +E +E
Sbjct: 77 QEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEFISE 136
Query: 405 GHCDFVK 411
H F+
Sbjct: 137 MHQRFLS 143
Score = 47.0 bits (112), Expect = 5e-06
Identities = 28/54 (51%), Positives = 33/54 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EE EEEEE+ EEE EEEEEE + EEEEE+ + +E EE EE EE
Sbjct: 79 EEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREE 132
Score = 42.8 bits (101), Expect = 1e-04
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EEE+ EEE EEEEEE + EEEEE+ + +E EE EE EE E ++ L
Sbjct: 85 EEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEFISEMHQRFLSG 144
Query: 404 EGH 406
E
Sbjct: 145 EDK 147
Score = 34.3 bits (79), Expect = 0.095
Identities = 23/56 (41%), Positives = 28/56 (50%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE E + E E + EE E E++EEEE EEEEE+ E ENE
Sbjct: 40 EEEREARGRAKRWSEGLSGVLESSLDREEARLELLEQQEEEESAEEEEEDPEEENE 95
Score = 30.1 bits (68), Expect = 2.1
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 312 SLNILAMQKVPGSNPTIDKN---LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEE 368
L +L Q+ S +++ + +Y G EEEEE+ + +E EE EE
Sbjct: 70 RLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREEL 129
Query: 369 EEEEEEEE-------EEEE------EEEEEEEEEEEEEEEEEEKELENE 404
EE E E+++ +E EE ++ + E++EEE+ ++E
Sbjct: 130 REEFISEMHQRFLSGEDKDFDYSKVDENEEYDDLKIVEQDEEERYFDDE 178
Score = 28.9 bits (65), Expect = 6.0
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEE E + E E + EE E E++EEEE E E E
Sbjct: 40 EEEREARGRAKRWSEGLSGVLESSLDREEARLELLEQQEEEESAEEEEED 89
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 53.0 bits (128), Expect = 7e-08
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------ 394
+G + E E +EE+ E++++++E+E+E++EEE + + EE
Sbjct: 26 ISGFIDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEARERFA 85
Query: 395 ------EEEEKELENEG--HCDFVKLREML 416
E+ K +E G K RE L
Sbjct: 86 ELREQYEKTRKAIEKHGRGSKKAQKAREAL 115
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 54.6 bits (131), Expect = 8e-08
Identities = 8/64 (12%), Positives = 11/64 (17%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G EE E E E E ++ L+
Sbjct: 109 GSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQ 168
Query: 403 NEGH 406
Sbjct: 169 PSHE 172
Score = 51.9 bits (124), Expect = 7e-07
Identities = 8/61 (13%), Positives = 12/61 (19%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+GL E E E E ++ + E
Sbjct: 116 SGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSP 175
Query: 402 E 402
E
Sbjct: 176 E 176
Score = 50.7 bits (121), Expect = 2e-06
Identities = 9/61 (14%), Positives = 15/61 (24%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++ + E+ EE E E E ++
Sbjct: 131 PASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSP 190
Query: 405 G 405
G
Sbjct: 191 G 191
Score = 50.4 bits (120), Expect = 2e-06
Identities = 9/61 (14%), Positives = 14/61 (22%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E ++ + E+ EE E E E +
Sbjct: 129 ESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPD 188
Query: 405 G 405
Sbjct: 189 S 189
Score = 50.0 bits (119), Expect = 2e-06
Identities = 7/61 (11%), Positives = 8/61 (13%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E E E E N+
Sbjct: 102 SPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161
Query: 405 G 405
Sbjct: 162 Q 162
Score = 49.6 bits (118), Expect = 4e-06
Identities = 6/61 (9%), Positives = 10/61 (16%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E E ++ + E+ E
Sbjct: 121 ENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEP 180
Query: 405 G 405
Sbjct: 181 P 181
Score = 49.2 bits (117), Expect = 4e-06
Identities = 8/63 (12%), Positives = 14/63 (22%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N E E E ++ + E+ EE +
Sbjct: 122 NTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPP 181
Query: 402 ENE 404
+E
Sbjct: 182 TSE 184
Score = 49.2 bits (117), Expect = 4e-06
Identities = 6/61 (9%), Positives = 8/61 (13%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E E E E + +
Sbjct: 106 SPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSS 165
Query: 405 G 405
Sbjct: 166 F 166
Score = 49.2 bits (117), Expect = 5e-06
Identities = 9/59 (15%), Positives = 13/59 (22%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E ++ + E+ EE E E E
Sbjct: 128 PESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPE 186
Score = 48.8 bits (116), Expect = 5e-06
Identities = 6/60 (10%), Positives = 9/60 (15%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E E ++ + E E
Sbjct: 117 GLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPE 176
Score = 48.8 bits (116), Expect = 6e-06
Identities = 5/60 (8%), Positives = 10/60 (16%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E E E ++ + ++ E
Sbjct: 119 SPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEP 178
Score = 48.4 bits (115), Expect = 7e-06
Identities = 6/61 (9%), Positives = 10/61 (16%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E E E E ++ + E+
Sbjct: 114 LASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHED 173
Query: 404 E 404
Sbjct: 174 S 174
Score = 48.4 bits (115), Expect = 7e-06
Identities = 9/63 (14%), Positives = 10/63 (15%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+G E EE E E E E
Sbjct: 95 SGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPES 154
Query: 402 ENE 404
N
Sbjct: 155 HNP 157
Score = 48.4 bits (115), Expect = 8e-06
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E + +E E + ++ ++ E E+E E E + G
Sbjct: 190 PGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPG 249
Query: 406 H 406
H
Sbjct: 250 H 250
Score = 48.4 bits (115), Expect = 8e-06
Identities = 7/62 (11%), Positives = 11/62 (17%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E E ++ + E+ EE E
Sbjct: 126 SSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEP 185
Query: 403 NE 404
Sbjct: 186 EP 187
Score = 48.4 bits (115), Expect = 8e-06
Identities = 8/61 (13%), Positives = 13/61 (21%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++ + E+ EE E E E +
Sbjct: 133 SHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGP 192
Query: 405 G 405
Sbjct: 193 P 193
Score = 48.0 bits (114), Expect = 1e-05
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + + E + +E E + ++ ++ E E+E E E E
Sbjct: 186 EPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGP 245
Query: 405 G 405
Sbjct: 246 P 246
Score = 47.7 bits (113), Expect = 1e-05
Identities = 9/61 (14%), Positives = 17/61 (27%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E ++ + E+ EE E E E + + E + +
Sbjct: 152 PESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEP 211
Query: 405 G 405
G
Sbjct: 212 G 212
Score = 47.7 bits (113), Expect = 1e-05
Identities = 6/61 (9%), Positives = 7/61 (11%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E E E +
Sbjct: 97 SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHN 156
Query: 405 G 405
Sbjct: 157 P 157
Score = 47.7 bits (113), Expect = 1e-05
Identities = 11/63 (17%), Positives = 20/63 (31%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L+ E+ EE E E E + + E + +E E + ++
Sbjct: 166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSP 225
Query: 403 NEG 405
N
Sbjct: 226 NTQ 228
Score = 47.3 bits (112), Expect = 2e-05
Identities = 8/61 (13%), Positives = 13/61 (21%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++ + E+ EE E E E +
Sbjct: 138 PSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSET 197
Query: 405 G 405
Sbjct: 198 P 198
Score = 47.3 bits (112), Expect = 2e-05
Identities = 9/64 (14%), Positives = 18/64 (28%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N ++ + E+ EE E E E + + E + +E +
Sbjct: 156 NPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQ 215
Query: 402 ENEG 405
Sbjct: 216 SPTP 219
Score = 47.3 bits (112), Expect = 2e-05
Identities = 6/60 (10%), Positives = 7/60 (11%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE E E E E +
Sbjct: 101 GSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPN 160
Score = 47.3 bits (112), Expect = 2e-05
Identities = 9/61 (14%), Positives = 15/61 (24%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++ + E+ EE E E E + + E
Sbjct: 139 SPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETP 198
Query: 405 G 405
Sbjct: 199 T 199
Score = 46.9 bits (111), Expect = 2e-05
Identities = 7/61 (11%), Positives = 8/61 (13%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E EE E E + E
Sbjct: 95 SGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPES 154
Query: 406 H 406
H
Sbjct: 155 H 155
Score = 46.9 bits (111), Expect = 2e-05
Identities = 9/61 (14%), Positives = 15/61 (24%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++ + E+ EE E E E + + E
Sbjct: 145 GPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPP 204
Query: 405 G 405
Sbjct: 205 Q 205
Score = 46.9 bits (111), Expect = 2e-05
Identities = 9/60 (15%), Positives = 15/60 (25%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E ++ + E+ EE E E E + + E
Sbjct: 148 EPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP 207
Score = 46.9 bits (111), Expect = 2e-05
Identities = 9/61 (14%), Positives = 15/61 (24%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++ + E+ EE E E E + + E
Sbjct: 141 PSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTS 200
Query: 405 G 405
Sbjct: 201 S 201
Score = 46.9 bits (111), Expect = 2e-05
Identities = 10/58 (17%), Positives = 19/58 (32%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
G + E + +E E + ++ ++ E E+E E E E
Sbjct: 191 GPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFP 248
Score = 46.9 bits (111), Expect = 3e-05
Identities = 9/60 (15%), Positives = 20/60 (33%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E + + E + +E E + ++ ++ E E++ E E
Sbjct: 182 TSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPE 241
Score = 46.9 bits (111), Expect = 3e-05
Identities = 9/68 (13%), Positives = 20/68 (29%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ + E + +E E + ++ ++ E E+E E E E
Sbjct: 188 DSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPF 247
Query: 402 ENEGHCDF 409
+
Sbjct: 248 PGHRSHSY 255
Score = 46.5 bits (110), Expect = 3e-05
Identities = 12/61 (19%), Positives = 22/61 (36%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E + + E + +E E + ++ ++ E E+E E E E
Sbjct: 184 EPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPERE 243
Query: 405 G 405
G
Sbjct: 244 G 244
Score = 46.5 bits (110), Expect = 3e-05
Identities = 4/61 (6%), Positives = 8/61 (13%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E E ++ + +
Sbjct: 114 LASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHED 173
Query: 405 G 405
Sbjct: 174 S 174
Score = 46.1 bits (109), Expect = 3e-05
Identities = 8/56 (14%), Positives = 15/56 (26%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E ++ + E+ EE E E E + + E +
Sbjct: 151 PPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQS 206
Score = 46.1 bits (109), Expect = 4e-05
Identities = 9/56 (16%), Positives = 15/56 (26%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E E ++ + E+ EE E E E + + E
Sbjct: 141 PSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSE 196
Score = 46.1 bits (109), Expect = 4e-05
Identities = 9/61 (14%), Positives = 19/61 (31%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ + E+ EE E E E + + E + +E E + +
Sbjct: 161 QQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQ 220
Query: 405 G 405
Sbjct: 221 Q 221
Score = 45.7 bits (108), Expect = 5e-05
Identities = 8/60 (13%), Positives = 16/60 (26%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E ++ + E+ EE E E E + + + +
Sbjct: 143 HPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSP 202
Score = 45.7 bits (108), Expect = 5e-05
Identities = 9/61 (14%), Positives = 17/61 (27%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++ + E+ EE E E E + + E ++
Sbjct: 148 EPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP 207
Query: 405 G 405
Sbjct: 208 P 208
Score = 45.7 bits (108), Expect = 5e-05
Identities = 5/61 (8%), Positives = 6/61 (9%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E E E +
Sbjct: 99 SVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPS 158
Query: 405 G 405
Sbjct: 159 P 159
Score = 45.7 bits (108), Expect = 6e-05
Identities = 12/61 (19%), Positives = 17/61 (27%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + E + E EE E+EE + E EE EN
Sbjct: 64 QGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENT 123
Query: 405 G 405
Sbjct: 124 S 124
Score = 45.3 bits (107), Expect = 7e-05
Identities = 8/60 (13%), Positives = 16/60 (26%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ + E+ EE E E E + + E + + E
Sbjct: 154 SHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGE 213
Score = 45.3 bits (107), Expect = 7e-05
Identities = 7/62 (11%), Positives = 18/62 (29%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E + + E + +E E + ++ ++ E E+E +
Sbjct: 183 SEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPER 242
Query: 403 NE 404
Sbjct: 243 EG 244
Score = 45.3 bits (107), Expect = 8e-05
Identities = 10/61 (16%), Positives = 21/61 (34%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE E E E + + E + +E E + ++ ++ +E+E
Sbjct: 176 EEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHED 235
Query: 406 H 406
Sbjct: 236 E 236
Score = 45.0 bits (106), Expect = 8e-05
Identities = 12/68 (17%), Positives = 16/68 (23%), Gaps = 7/68 (10%)
Query: 345 EEEEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E + E EE E+EE + E EE E
Sbjct: 69 TESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSP 128
Query: 398 EKELENEG 405
E +
Sbjct: 129 ESPASHSP 136
Score = 45.0 bits (106), Expect = 8e-05
Identities = 7/58 (12%), Positives = 7/58 (12%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
G E EE E E E
Sbjct: 91 GPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHE 148
Score = 44.6 bits (105), Expect = 1e-04
Identities = 13/73 (17%), Positives = 17/73 (23%), Gaps = 10/73 (13%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEEEEEEEEEE 393
E+ + E + E EE E+EE E EE E
Sbjct: 62 AEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPE 121
Query: 394 EEEEEKELENEGH 406
H
Sbjct: 122 NTSGSSPESPASH 134
Score = 44.6 bits (105), Expect = 1e-04
Identities = 6/56 (10%), Positives = 6/56 (10%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
G E EE E E
Sbjct: 90 GGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPG 145
Score = 44.2 bits (104), Expect = 1e-04
Identities = 9/61 (14%), Positives = 17/61 (27%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+ EE E E E + + E + +E E + +
Sbjct: 165 SFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPS 224
Query: 405 G 405
Sbjct: 225 P 225
Score = 44.2 bits (104), Expect = 1e-04
Identities = 9/61 (14%), Positives = 17/61 (27%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+ EE E E E + + E + +E E + +
Sbjct: 164 SSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAP 223
Query: 405 G 405
Sbjct: 224 S 224
Score = 44.2 bits (104), Expect = 1e-04
Identities = 12/74 (16%), Positives = 14/74 (18%), Gaps = 10/74 (13%)
Query: 343 GLEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ E EE E+EE E EE E E
Sbjct: 70 ESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPE 129
Query: 393 EEEEEEKELENEGH 406
H
Sbjct: 130 SPASHSPPPSPPSH 143
Score = 44.2 bits (104), Expect = 2e-04
Identities = 8/63 (12%), Positives = 11/63 (17%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G +EE + E EE E E
Sbjct: 82 GEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPP 141
Query: 403 NEG 405
+
Sbjct: 142 SHP 144
Score = 44.2 bits (104), Expect = 2e-04
Identities = 8/62 (12%), Positives = 18/62 (29%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E + + E + +E E + ++ ++ E E+E
Sbjct: 181 PTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEP 240
Query: 403 NE 404
Sbjct: 241 ER 242
Score = 44.2 bits (104), Expect = 2e-04
Identities = 9/60 (15%), Positives = 17/60 (28%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E+ EE E E E + + E + +E E + +
Sbjct: 163 PSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQA 222
Score = 43.8 bits (103), Expect = 2e-04
Identities = 6/57 (10%), Positives = 6/57 (10%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E EE E E E
Sbjct: 92 PSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHE 148
Score = 43.8 bits (103), Expect = 2e-04
Identities = 9/60 (15%), Positives = 18/60 (30%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+ EE E E E + + E + +E E + ++ +
Sbjct: 172 EDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAV 231
Score = 43.4 bits (102), Expect = 3e-04
Identities = 10/65 (15%), Positives = 19/65 (29%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
F E+ EE E E E + + E + +E E + ++
Sbjct: 166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSP 225
Query: 401 LENEG 405
+
Sbjct: 226 NTQQA 230
Score = 43.4 bits (102), Expect = 3e-04
Identities = 10/60 (16%), Positives = 20/60 (33%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E E + + E + +E E + ++ ++ E E+E
Sbjct: 177 EPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDE 236
Score = 43.4 bits (102), Expect = 3e-04
Identities = 9/64 (14%), Positives = 19/64 (29%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ + E+ EE E E E + + E + +E E + ++
Sbjct: 164 SSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAP 223
Query: 402 ENEG 405
Sbjct: 224 SPNT 227
Score = 42.7 bits (100), Expect = 5e-04
Identities = 5/59 (8%), Positives = 5/59 (8%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E EE E E
Sbjct: 92 PSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPA 150
Score = 41.5 bits (97), Expect = 0.001
Identities = 8/65 (12%), Positives = 9/65 (13%), Gaps = 4/65 (6%)
Query: 345 EEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+EE E EE E E
Sbjct: 83 EKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPS 142
Query: 401 LENEG 405
Sbjct: 143 HPGPH 147
Score = 36.9 bits (85), Expect = 0.035
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 2/62 (3%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEKELEN 403
+ E+ + E + E EE E+EE + E
Sbjct: 53 TSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAE 112
Query: 404 EG 405
E
Sbjct: 113 EL 114
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 54.1 bits (131), Expect = 9e-08
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 15/108 (13%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEEEEEE 397
E+ E EEE E E E +EE+E E ++EE E+E EE +E +EE E +E
Sbjct: 159 QREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKER 218
Query: 398 EKEL-ENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+KE E E + ++ L R E + EK +++R EEE
Sbjct: 219 QKEKEEAEKRR---RQKQELQRAREEQIEEKEERL-----QEERAEEE 258
Score = 49.1 bits (118), Expect = 4e-06
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 19/97 (19%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------------EEEEE 390
+EE++ + EE+EEE +E EEE + EEEE E + +E EE E+
Sbjct: 26 IEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREK 85
Query: 391 EEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREK 427
+EE EE+ E E ++ E++ R ED E
Sbjct: 86 RRQEEYEERLQERE------QMDEIIERIQEEDEAEA 116
Score = 48.8 bits (117), Expect = 5e-06
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 23/124 (18%)
Query: 344 LEEEEEEEEEEEEEEEEE-------------EEEEEEEEEEEEEEEEEEEEE-----EEE 385
+EE E +E ++E+EE E EE+ EE+EE +EE EEE E E++
Sbjct: 209 YQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQ 268
Query: 386 EEEEEEEEEEEEEKELENEGHCDFVKL-----REMLIRTNMEDMREKTHCRHYELYRKKR 440
E+EE E+E E++ ++ H ++ E E++ E R E R+ R
Sbjct: 269 AEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQAR 328
Query: 441 LEEE 444
+EEE
Sbjct: 329 IEEE 332
Score = 48.0 bits (115), Expect = 9e-06
Identities = 26/100 (26%), Positives = 47/100 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++EE E+E EE +E + +EE E +E ++E+EE E+ +++E + E
Sbjct: 181 EREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRARE 240
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ + R R E RE+ + E ++ E
Sbjct: 241 EQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAE 280
Score = 45.7 bits (109), Expect = 4e-05
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 30/118 (25%)
Query: 344 LEEEEEEEEEEEEEEEE-----------------EEEEEEEEEEEEEEEEEEEEEEEEEE 386
++EE+E E +E+ E+++ EEE+E E EEE + E + E+ E EE
Sbjct: 108 IQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREE 167
Query: 387 EEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E E E E +EEKE E +LR E E+ + R +EE
Sbjct: 168 EREAERRERKEEKEREVA------RLRAQQ----EEAEDER---EELDELRADLYQEE 212
Score = 42.2 bits (100), Expect = 6e-04
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEE------------EEEEEEEEEEEEEEEEEEEEEEEEEE 391
+EEE + EEEE E + +EE EE E+ +EE EE +E E+ +E E
Sbjct: 47 MEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIE 106
Query: 392 EEEEEEEKELE 402
+EE+E E +
Sbjct: 107 RIQEEDEAEAQ 117
Score = 40.3 bits (95), Expect = 0.002
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 344 LEEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E+EE E+E E+ + EE+EE E EEE EE E EEE E +
Sbjct: 268 QAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQA 327
Query: 394 EEEEEKE 400
EEE++
Sbjct: 328 RIEEERQ 334
Score = 39.5 bits (93), Expect = 0.004
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 22/88 (25%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEE---------------- 377
+ EE+EE +EE EEE E E++ E+EE E+E E
Sbjct: 237 RAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQ 296
Query: 378 -EEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+EE E EEE EE E +E E E
Sbjct: 297 IEEKEERRAAEREEELEEGERLREEEAE 324
Score = 39.1 bits (92), Expect = 0.005
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEE 390
+ E++ E+EE E+E E+ + E EE+EE E EEE EE E
Sbjct: 259 AERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERL 318
Query: 391 EEEEEEEEKELENE 404
EEE E + +E E
Sbjct: 319 REEEAERQARIEEE 332
Score = 39.1 bits (92), Expect = 0.005
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 344 LEEEEEEEEE-----------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
EE EE +E +EE+E E +E+ E++++ EE +E EE E +EEE+E
Sbjct: 88 QEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKER 147
Query: 393 EEEEEEKELE 402
E EEE K LE
Sbjct: 148 EREEELKILE 157
Score = 38.4 bits (90), Expect = 0.010
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 344 LEEEEEEEEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+EE E+ +EE EE +E E E +EE+E E +E+ E++++ EE +E EE E
Sbjct: 80 IEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIE 139
Query: 398 EKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
KE E E + RE ++ +E REK E +R E +
Sbjct: 140 RKEEEKE------REREEELK-ILEYQREKA--EREEEREAERRERK 177
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 54.3 bits (131), Expect = 1e-07
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
L+EE E+E + E++ +E E EE+ E +E E EE +++ EEE ++E
Sbjct: 199 LQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESA 258
Query: 399 KELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E + K +T + +EK R EL R+ + E++
Sbjct: 259 WEGFESEYEPINKPVRPKRKTKAQRNKEK---RRKELEREAKEEKQ 301
Score = 44.7 bits (106), Expect = 1e-04
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEEEEEEE 391
GL EE +++ EEE ++E E E E E + E+ +E E E +EE
Sbjct: 240 GLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEE 299
Query: 392 EEEEEEEKELEN 403
++ +++ +L
Sbjct: 300 KQLKKKLAQLAR 311
Score = 43.2 bits (102), Expect = 3e-04
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEE 389
+ + E EE +++ EEE ++E E E E E + E+ +E E
Sbjct: 234 LDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELE 293
Query: 390 EEEEEEEEEKELENE 404
E +EE++ K+ +
Sbjct: 294 REAKEEKQLKKKLAQ 308
Score = 39.3 bits (92), Expect = 0.005
Identities = 14/58 (24%), Positives = 35/58 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ +E E E +EE++ +++ + +E +E ++E+ ++E+ +E E+K+L+
Sbjct: 286 EKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLK 343
Score = 37.0 bits (86), Expect = 0.026
Identities = 12/57 (21%), Positives = 34/57 (59%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E E E +EE++ +++ + +E +E ++E+ ++E+ +E E+++ + ++L
Sbjct: 291 ELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRKL 347
Score = 36.6 bits (85), Expect = 0.036
Identities = 11/57 (19%), Positives = 32/57 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E E E +EE++ +++ + +E +E ++E+ ++E+ +E E+++ +
Sbjct: 287 KRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLK 343
Score = 30.1 bits (68), Expect = 3.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREML 416
E+ +E +EE E+E + E++ +E E EE++ E ++ E L
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGL 241
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 53.5 bits (128), Expect = 1e-07
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E + + + EEEE EE + EEEE+EE + E E EEEEEE E + E
Sbjct: 165 DEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGED 224
Query: 406 HCDFVKLREMLIRTNMEDMRE 426
D+ R + E+M E
Sbjct: 225 VVDYEGERIDKKQGEEEEMEE 245
Score = 51.5 bits (123), Expect = 5e-07
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + + EEEE EE + EEEE+EE + E E EEEEEE E ++ E ++ E
Sbjct: 170 AQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYE 229
Query: 405 G 405
G
Sbjct: 230 G 230
Score = 50.8 bits (121), Expect = 9e-07
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEEE EE + EEEE+EE + E E EEEEEE E ++ E+ + E E ++
Sbjct: 176 NEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDK 235
Query: 405 GHCD 408
+
Sbjct: 236 KQGE 239
Score = 48.8 bits (116), Expect = 4e-06
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEKE 400
++ EEEE EE + EEEE+EE + E E EEEEEE E ++ E+ + E +
Sbjct: 173 DVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGER 232
Query: 401 LEN 403
++
Sbjct: 233 IDK 235
Score = 48.5 bits (115), Expect = 5e-06
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + EEEE EE + EEEE+EE + E E EEEEEE E ++ E+ + E E
Sbjct: 172 PDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGE 231
Score = 47.3 bits (112), Expect = 1e-05
Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
Y G E EEEEEE E ++ E+ + E E ++++ EEEE EEE E E EE
Sbjct: 198 SDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEE 257
Query: 397 EEKELEN 403
E E
Sbjct: 258 ESPSEEV 264
Score = 44.2 bits (104), Expect = 1e-04
Identities = 26/60 (43%), Positives = 34/60 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEEEEE E ++ E+ + E E ++++ EEEE EEE E E EEE EE NE
Sbjct: 210 EEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNE 269
Score = 43.1 bits (101), Expect = 3e-04
Identities = 31/77 (40%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 342 NGLEEEEEEE-------EEEEEEEEEEEEEEE---------EEEEEEEEEEEEEEEEEEE 385
+G EEEE+EE E E EEEEEE E + E E ++++ EEEE EE
Sbjct: 186 DGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEE 245
Query: 386 EEEEEEEEEEEEEKELE 402
E E E EEE E
Sbjct: 246 EVINLFEIEWEEESPSE 262
Score = 41.9 bits (98), Expect = 6e-04
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEEEE E ++ E+ + E E ++++ EEEE EEE E E EEE EE E
Sbjct: 211 EEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEE 270
Score = 39.2 bits (91), Expect = 0.004
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+ + +E+ +E + + + EEEE EE + EEEE+EE + EG
Sbjct: 147 EKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEG 204
Score = 37.7 bits (87), Expect = 0.012
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
E+ + +E+ +E + + + EEEE EE + EEEE+EE ++ G +
Sbjct: 147 EKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGN 205
Score = 36.9 bits (85), Expect = 0.021
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 344 LEEEEEEEEE---------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
L EEEEEE E + E E ++++ EEEE EEE E E EEE EE
Sbjct: 208 LNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRN 267
Query: 395 EEEEKE 400
EE
Sbjct: 268 NEESPA 273
Score = 35.4 bits (81), Expect = 0.075
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
++ E E ++++ EEEE EEE E E EEE EE EE ++++ E
Sbjct: 226 VDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQKVE 279
Score = 34.2 bits (78), Expect = 0.15
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E E ++++ EEEE EEE E E EEE EE EE ++++ E
Sbjct: 225 VVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQKVE 279
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 55.0 bits (132), Expect = 1e-07
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 327 TIDKNLYSFFDCKYFNGL------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+I K+ SFF+ ++ L E +E EEE E E ++E +E +E+EE +E E+
Sbjct: 906 SIMKDPISFFEDGGWSFLMVGSDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDL 965
Query: 381 EEEEEEEEEEEEEEEEEEKELENE 404
E+E E + +EE+ E+ ELE++
Sbjct: 966 SEDESENDSSDEEDGEDWDELESK 989
Score = 41.9 bits (98), Expect = 0.001
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E +E+EE +E E+ E+E E + +EE+ E+ +E E + +
Sbjct: 950 DETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 41.2 bits (96), Expect = 0.002
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E +E+EE +E E+ E+E E + +EE+ E+ +E E + +
Sbjct: 950 DETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 54.3 bits (130), Expect = 1e-07
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEEE+EE EE EE EE E + E++ + + EE ++EE+E E EEEE+ + EN
Sbjct: 112 EEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENN 171
Query: 405 GHCDFVKL--------REMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
G KL R +E +E + + LEE
Sbjct: 172 GEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEEL 219
Score = 51.2 bits (122), Expect = 1e-06
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+ E E EEEE+EE EE EE EE E + E++ + + EE ++EE+E E E E
Sbjct: 100 MQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEE 159
Score = 44.6 bits (105), Expect = 1e-04
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE EE +++ EE + EEEE+ ++EE + + EEEE+ +EE E E EK
Sbjct: 214 LELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQ 271
Score = 44.3 bits (104), Expect = 1e-04
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 343 GLEEEEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE EE E + E++ + + EE ++EE+E E EEEE+ + EE E + K
Sbjct: 122 EREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKH 181
Query: 401 LENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELY--------RKKRLEEESN 446
EN + ++ E +++K EL R+K LEEE
Sbjct: 182 TENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQ 235
Score = 43.9 bits (103), Expect = 2e-04
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE +++ EE + EEEE+ ++EE + + EEEE+ +EE E E E+ +++
Sbjct: 216 LEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPE 275
Query: 404 EG 405
+G
Sbjct: 276 DG 277
Score = 42.3 bits (99), Expect = 6e-04
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E EE +++ EE + EEEE+ ++EE + + EEEE+ +EE E E E
Sbjct: 213 ALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAE 268
Score = 42.3 bits (99), Expect = 7e-04
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E E EE +++ EE + EEEE+ ++EE + + EEEE+ +EE E + E
Sbjct: 209 QQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAE 268
Score = 40.4 bits (94), Expect = 0.002
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++++E E EE +++ EE + EEEE+ ++EE + + EEEE+ +EE E+
Sbjct: 207 QKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEA 266
Score = 38.1 bits (88), Expect = 0.013
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+N +S + +E E+ +++++E E EE +++ EE + EEEE+ ++EE
Sbjct: 183 ENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEA 242
Query: 390 EEEEEEEEEKELENE 404
+ + EEEEK E
Sbjct: 243 DRKSREEEEKRRLKE 257
Score = 38.1 bits (88), Expect = 0.015
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E E+ +++++E E EE +++ EE + EEEE+ ++EE + + EEEE++ L+ E
Sbjct: 199 GKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEE 258
Score = 37.7 bits (87), Expect = 0.017
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ + E E ++E + ++ E +E+ E E EEEE+EE EE EE
Sbjct: 67 EERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEV 126
Query: 397 EEKE 400
EE E
Sbjct: 127 EETE 130
Score = 37.3 bits (86), Expect = 0.022
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EEEE+ ++EE + + EEEE+ +EE E E E+ ++ E+ E++K
Sbjct: 231 EEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSEDKK 283
Score = 37.3 bits (86), Expect = 0.024
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
LEEEE+ ++EE + + EEEE+ +EE E E E+ ++ E+ E+
Sbjct: 230 LEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSED 281
Score = 36.9 bits (85), Expect = 0.029
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E+ +++++E E EE +++ EE + EEEE+ ++EE + + EEEE+ + E
Sbjct: 201 EFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEI 259
Score = 36.6 bits (84), Expect = 0.036
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + EEEE+ ++EE + + EEEE+ +EE E E E+ ++ E+ E
Sbjct: 225 ERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSE 280
Score = 36.2 bits (83), Expect = 0.054
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EEEE+ ++EE + + EEEE+ +EE E E E+ ++ E+ E+
Sbjct: 231 EEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSED 281
Score = 35.4 bits (81), Expect = 0.099
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE+ ++EE + + EEEE+ +EE E E E+ ++ E+ E+++ K +
Sbjct: 232 EEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSEDKKPFKCFTPK 291
Query: 405 G 405
G
Sbjct: 292 G 292
Score = 34.6 bits (79), Expect = 0.18
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EEEE+ ++EE + + EEEE+ +EE E E E+ ++ E+ ++
Sbjct: 231 EEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSED 281
Score = 31.2 bits (70), Expect = 1.7
Identities = 19/87 (21%), Positives = 41/87 (47%)
Query: 318 MQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
++ ++++N F K + E + E +E E+ +++++E E
Sbjct: 157 EEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALEL 216
Query: 378 EEEEEEEEEEEEEEEEEEEEEKELENE 404
EE +++ EE + EEEE+ K+ E +
Sbjct: 217 EELKKKREERRKVLEEEEQRRKQEEAD 243
Score = 30.4 bits (68), Expect = 3.3
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E + E +E E+ +++++E E EE +++ EE + EEEE++ + E
Sbjct: 192 EGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEA 242
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 54.0 bits (130), Expect = 1e-07
Identities = 14/58 (24%), Positives = 39/58 (67%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE+ +++E+++ EE ++++ E+E ++ E+E +E++++ EE ++ ++K+ E
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAE 135
Score = 53.7 bits (129), Expect = 2e-07
Identities = 12/59 (20%), Positives = 34/59 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++ EE ++++ E+E ++ E+E +E++++ EE ++ ++++ EE K
Sbjct: 86 QQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144
Score = 52.9 bits (127), Expect = 3e-07
Identities = 12/60 (20%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+++ EE ++++ E+E ++ E+E +E++++ EE ++ ++++ EE
Sbjct: 84 KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAA 143
Score = 51.3 bits (123), Expect = 9e-07
Identities = 13/59 (22%), Positives = 38/59 (64%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+ +++E+++ EE ++++ E+E ++ E+E +E++++ EE ++ +++ E
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE 136
Score = 49.8 bits (119), Expect = 2e-06
Identities = 11/56 (19%), Positives = 37/56 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+++E+++ EE ++++ E+E ++ E+E +E++++ EE ++ ++++ E+
Sbjct: 82 KKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
Score = 49.4 bits (118), Expect = 4e-06
Identities = 12/59 (20%), Positives = 38/59 (64%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+ +++E+++ EE ++++ E+E ++ E+E +E++++ EE ++ ++++ E
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
Score = 46.7 bits (111), Expect = 2e-05
Identities = 11/60 (18%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E ++++ E+E ++ E+E +E++++ EE ++ ++++ EE + + + E
Sbjct: 91 ELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAE 150
Score = 46.7 bits (111), Expect = 2e-05
Identities = 12/61 (19%), Positives = 34/61 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L++++ E+E ++ E+E +E++++ EE ++ ++++ EE + + + E
Sbjct: 92 LQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEA 151
Query: 404 E 404
E
Sbjct: 152 E 152
Score = 44.4 bits (105), Expect = 1e-04
Identities = 12/60 (20%), Positives = 40/60 (66%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+N +++++ + EE+ +++E+++ EE ++++ E+E ++ E+E +E++++ E+
Sbjct: 64 YNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA 123
Score = 43.6 bits (103), Expect = 2e-04
Identities = 11/58 (18%), Positives = 29/58 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E ++ E+E +E++++ EE ++ ++++ EE + + + E E K
Sbjct: 100 QERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAA 157
Score = 41.3 bits (97), Expect = 0.001
Identities = 12/61 (19%), Positives = 29/61 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE+E +E++++ EE ++ ++++ EE + + + E E + K+
Sbjct: 106 LEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAA 165
Query: 404 E 404
E
Sbjct: 166 E 166
Score = 37.9 bits (88), Expect = 0.016
Identities = 9/54 (16%), Positives = 26/54 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ E+E +E++++ EE ++ ++++ EE + + + E E +
Sbjct: 105 QLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAA 158
Score = 36.3 bits (84), Expect = 0.050
Identities = 11/55 (20%), Positives = 28/55 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E +++ E E ++ E +++ E E + E +++ E E +++ E ++K
Sbjct: 164 AAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 35.6 bits (82), Expect = 0.071
Identities = 12/59 (20%), Positives = 29/59 (49%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +++ E E ++ E +++ E E + E +++ E E +++ E +K+ E
Sbjct: 164 AAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAE 222
Score = 35.6 bits (82), Expect = 0.075
Identities = 8/56 (14%), Positives = 26/56 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E++++ EE ++ ++++ EE + + + E E + ++ E +
Sbjct: 113 AQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAK 168
Score = 35.2 bits (81), Expect = 0.092
Identities = 11/60 (18%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++++ EE ++ ++++ EE + + + E E + ++ E +K+ E E
Sbjct: 115 EQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAE 174
Score = 35.2 bits (81), Expect = 0.10
Identities = 9/60 (15%), Positives = 27/60 (45%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E++++ EE ++ ++++ EE + + + E E + ++ E K+
Sbjct: 114 QEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEA 173
Score = 34.0 bits (78), Expect = 0.26
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E + ++ E +++ E E ++ E +++ E E + E +K+ E E
Sbjct: 150 EAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAE 206
Score = 33.6 bits (77), Expect = 0.33
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ E E + ++ E +++ E E ++ E +++ E E + E ++K
Sbjct: 147 AKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
Score = 33.2 bits (76), Expect = 0.38
Identities = 11/58 (18%), Positives = 29/58 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E +++ E E ++ E +++ E E + E +++ E E +++ E +++ E
Sbjct: 165 AEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAE 222
Score = 32.9 bits (75), Expect = 0.55
Identities = 10/54 (18%), Positives = 26/54 (48%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++ E +++ E E ++ E +++ E E + E +++ E E ++K
Sbjct: 157 AAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKK 210
Score = 32.5 bits (74), Expect = 0.70
Identities = 11/57 (19%), Positives = 26/57 (45%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E + ++ E +++ E E ++ E +++ E E + E +++ E E
Sbjct: 150 EAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAE 206
Score = 32.1 bits (73), Expect = 0.81
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + ++ E +++ E E ++ E +++ E E + E +++ E E
Sbjct: 151 AEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAE 206
Score = 32.1 bits (73), Expect = 0.83
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E ++ E +++ E E + E +++ E E +++ E +++ E K
Sbjct: 171 AEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKA 225
Score = 32.1 bits (73), Expect = 0.96
Identities = 10/59 (16%), Positives = 27/59 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ E +++ E E ++ E +++ E E + E +++ E E +++ E
Sbjct: 156 AAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAE 214
Score = 31.7 bits (72), Expect = 1.1
Identities = 10/58 (17%), Positives = 26/58 (44%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++ E +++ E E + E +++ E E +++ E +++ E +
Sbjct: 171 AEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAA 228
Score = 31.7 bits (72), Expect = 1.2
Identities = 10/59 (16%), Positives = 26/59 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E ++ E +++ E E + E +++ E E +++ E +++ E +
Sbjct: 170 KAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAA 228
Score = 31.3 bits (71), Expect = 1.6
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 345 EEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E + E +++ E E ++ E +++ E E + E +++ E E +K
Sbjct: 150 EAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKK 209
Query: 400 ELENE 404
+ E
Sbjct: 210 KAAAE 214
Score = 31.3 bits (71), Expect = 1.8
Identities = 9/56 (16%), Positives = 25/56 (44%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E +++ E E + E +++ E E +++ E +++ E + + E +
Sbjct: 180 AAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAK 235
Score = 29.8 bits (67), Expect = 4.8
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E +++ E E + E +++ E E +++ E +++ E + + E K
Sbjct: 181 AEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKA 236
Score = 29.4 bits (66), Expect = 6.2
Identities = 9/54 (16%), Positives = 25/54 (46%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++ E +++ E E + E +++ E E +++ E +++ E + K
Sbjct: 176 AKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK 229
Score = 29.0 bits (65), Expect = 9.1
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E E + E +++ E E +++ E +++ E + + E + EK
Sbjct: 186 KAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKA 241
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 54.8 bits (132), Expect = 1e-07
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE+ + EEE+EEE E + +++E E+E+E+EE++EE E + E+
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEI--- 57
Query: 405 GHCDFVKLREM--LIRTNMEDMREK 427
+ +L+E+ + ++ + E+
Sbjct: 58 SKREKARLKELKKQKKQEIQKILEQ 82
Score = 47.9 bits (114), Expect = 2e-05
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEK 399
EEE+EEE E + +++E E+E+E+EE++EE E + E + E+ K
Sbjct: 7 TQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLK 66
Query: 400 ELENEGHCDFVKLREMLIRTNMEDMREKTHCR 431
EL+ + + K+ E DM K R
Sbjct: 67 ELKKQKKQEIQKILEQQNAAIDADMNNKGKGR 98
Score = 36.3 bits (84), Expect = 0.065
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 333 YSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ FF+ + L E+E + ++ + ++ + E EE + EE+EE+E+ EE
Sbjct: 764 FQFFNVQRLTELYEKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
Score = 34.4 bits (79), Expect = 0.20
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD--------FV 410
E+E + ++ + ++ + E EE + EE+EE+++L EG F+
Sbjct: 777 EKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEEGFSTWSRRDFNAFI 836
Query: 411 KLREMLIRTNMEDM 424
+ E R +++ +
Sbjct: 837 RACEKYGRNDIKSI 850
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 51.1 bits (123), Expect = 1e-07
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ +++E+EEEEEEE E EE +EEE+ +E E+E + + E+ E E ++KE+ E
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKE 149
Score = 49.6 bits (119), Expect = 4e-07
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+++E+EEEEEEE E EE +EEE+ +E E+E + + E+ E E +++E KE
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKE 149
Score = 49.2 bits (118), Expect = 5e-07
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
L +++E+EEEEEEE E EE +EEE+ +E E+E + + E+ E E +++E
Sbjct: 94 LGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Score = 48.8 bits (117), Expect = 8e-07
Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
GL+++E+EEEEEEE E EE +EEE+ +E E+E + + E+ E E +++E
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Score = 48.8 bits (117), Expect = 9e-07
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ +++E+EEEEEEE E EE +EEE+ +E E+E + + E+ E E ++++ L+ +
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 48.8 bits (117), Expect = 9e-07
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+++E+EEEEEEE E EE +EEE+ +E E+E + + E+ E E +++E +E+
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 48.1 bits (115), Expect = 1e-06
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ +++E+EEEEEEE E EE +EEE+ +E E+E + + E+ E E +++E
Sbjct: 91 RKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKE 145
Score = 39.6 bits (93), Expect = 0.001
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+ +++E+EEEEEEE E EE +EEE+ +E E+E
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREK 135
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 51.6 bits (124), Expect = 2e-07
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E++ EE + EE EE E+ EEEE EEEE EEE E EEE++E E E + EE ++K L
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYL 60
Score = 51.2 bits (123), Expect = 3e-07
Identities = 33/73 (45%), Positives = 45/73 (61%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++E++ EE + EE EE E+ EEEE EEEE EEE E EEE++E E E + EE K+
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRA 62
Query: 406 HCDFVKLREMLIR 418
+F LR+ R
Sbjct: 63 QAEFENLRKRTER 75
Score = 48.9 bits (117), Expect = 1e-06
Identities = 29/59 (49%), Positives = 38/59 (64%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E + EE EE E+ EEEE EEEE EEE E EEE++E E E + EE +++ + E EN
Sbjct: 10 EPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFEN 68
Score = 42.7 bits (101), Expect = 2e-04
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
EE EE E+ EEEE EEEE EEE E EEE++E E E + EE ++
Sbjct: 10 EPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKD 57
Score = 38.9 bits (91), Expect = 0.003
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ EEEE EEEE EEE E EEE++E E E + EE +++ + E E + E E E
Sbjct: 19 AEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTERERE 78
Score = 36.9 bits (86), Expect = 0.015
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEE 395
EEEE EEEE EEE E EEE++E E E + EE +++ + E E E E
Sbjct: 18 EAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTERER 77
Query: 396 EEEKELENE 404
EE K+ E
Sbjct: 78 EEAKKYAIE 86
Score = 31.9 bits (73), Expect = 0.64
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ EEE EEE E EEE++E E E + EE +++ + E E + E E EE +
Sbjct: 22 SEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAK 81
Query: 398 EKELEN 403
+ +E
Sbjct: 82 KYAIEK 87
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 51.4 bits (123), Expect = 2e-07
Identities = 25/71 (35%), Positives = 45/71 (63%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +E + +EEE++ E EE E+E+E E E E+ E++E+EE +EEE+EEE ++++ +
Sbjct: 44 ENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQ 103
Query: 405 GHCDFVKLREM 415
F + +
Sbjct: 104 EVFSFKRKKPF 114
Score = 49.8 bits (119), Expect = 6e-07
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E + +EEE++ E EE E+E+E E E E+ E++E+EE +EEE+EEE E+ K+ E
Sbjct: 47 DEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVF 106
Query: 405 GHCDFVKLREM 415
+EM
Sbjct: 107 SFKRKKPFKEM 117
Score = 49.8 bits (119), Expect = 6e-07
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+E +E + +EEE++ E EE E+E+E E E E+ E++E+EE +EEE+E+E E+
Sbjct: 41 EEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDV 100
Query: 405 GHCDFVKLREMLIRTNMEDM 424
+ + + ++M
Sbjct: 101 KQQEVFSFK---RKKPFKEM 117
Score = 49.1 bits (117), Expect = 1e-06
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ + +EEE++ E EE E+E+E E E E+ E++E+EE +EEE+EEE E+ +++
Sbjct: 46 SDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQ 103
Score = 47.5 bits (113), Expect = 4e-06
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EEE+E +E + +EEE++ E EE E+E+E E E E+ E++E+EE +EEEKE E E
Sbjct: 39 KEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAE 98
Score = 47.1 bits (112), Expect = 4e-06
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+EEE+E +E + +EEE++ E EE E+E+E E E E+ E++E+EE +E E E
Sbjct: 36 ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKE 94
Score = 45.6 bits (108), Expect = 2e-05
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E+E+E E E E+ E++E+EE +EEE+EEE E+ +++E + ++ KE+ E
Sbjct: 61 YEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKPFKEMNLE 120
Query: 405 GHCDF 409
DF
Sbjct: 121 EKIDF 125
Score = 41.7 bits (98), Expect = 3e-04
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+E+EEE+E +E + +EEE++ E EE E+E+E E E E+ E++E+E+ + E
Sbjct: 36 ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEK 93
Score = 39.4 bits (92), Expect = 0.002
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E+E+E E E E+ E++E+EE +EEE+EEE E+ +++E
Sbjct: 61 YEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFS 107
Score = 39.4 bits (92), Expect = 0.002
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
Y +E+E E E E+ E++E+EE +EEE+EEE E+ +++E
Sbjct: 61 YEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFS 107
Score = 33.3 bits (76), Expect = 0.23
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 318 MQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
+ S K Y + + G E E+ E++E+EE +EEE+EEE E+ +++E
Sbjct: 46 SDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEV 105
Query: 378 EE 379
Sbjct: 106 FS 107
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 53.8 bits (130), Expect = 2e-07
Identities = 18/83 (21%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE ++E ++ + EE+++++EE +EE+EE + E++E++++++++++ +E E
Sbjct: 107 EEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLE 166
Query: 405 GHCDFVKLREMLIRTNMEDMREK 427
+ R E
Sbjct: 167 ------RRRRRREWEEKRAELEF 183
Score = 49.6 bits (119), Expect = 4e-06
Identities = 14/54 (25%), Positives = 40/54 (74%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ EEE ++E ++ + EE+++++EE +EE+EE + E++E++++++++++
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDD 157
Score = 49.6 bits (119), Expect = 4e-06
Identities = 20/78 (25%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 327 TIDKNLYSFFDCK--YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
I++ L Y + E+++++EE +EE+EE + E++E++++++++++ E
Sbjct: 105 DIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERS 164
Query: 385 EEEEEEEEEEEEEEKELE 402
E E EE+ ELE
Sbjct: 165 LERRRRRREWEEKRAELE 182
Score = 48.1 bits (115), Expect = 1e-05
Identities = 14/60 (23%), Positives = 42/60 (70%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++ + EEE ++E ++ + EE+++++EE +EE+EE + E++E++++++++ ++
Sbjct: 101 FDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIAT 160
Score = 47.3 bits (113), Expect = 2e-05
Identities = 14/55 (25%), Positives = 38/55 (69%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EEE ++E ++ + EE+++++EE +EE+EE + E++E+++++ + ++
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDI 158
Score = 47.3 bits (113), Expect = 2e-05
Identities = 14/55 (25%), Positives = 38/55 (69%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ EEE ++E ++ + EE+++++EE +EE+EE + E++E++++ + +++
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDI 158
Score = 46.1 bits (110), Expect = 4e-05
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
+ EEE ++E ++ + EE+++++EE +EE+EE + E++E++ + +++ +
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRER 163
Query: 413 REMLIRTNMEDMREKTHCR 431
R RE R
Sbjct: 164 SLERRRR----RREWEEKR 178
Score = 41.5 bits (98), Expect = 0.001
Identities = 15/63 (23%), Positives = 36/63 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+++EE +EE+EE + E++E++++++++++ E E E EE+ E + +
Sbjct: 128 DDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAELEFYYYQ 187
Query: 405 GHC 407
G
Sbjct: 188 GTY 190
Score = 40.4 bits (95), Expect = 0.003
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++EE +EE+EE + E++E++++++++++ E E E EE+ E E
Sbjct: 127 DDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAELEFY 184
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 52.8 bits (126), Expect = 3e-07
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 322 PGSNPTIDKNLYSFFDCKYFNGLEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
P S P + K + + G+ EE+ E E +E E ++E+++EE E E +E
Sbjct: 251 PLSRPALKKEKQGA-EEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKE 309
Query: 377 EEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTH 429
E + + +E EE+EE++E EE E E D + E I M T+
Sbjct: 310 EVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQMESATN 362
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 53.3 bits (128), Expect = 3e-07
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
L E EEE+E++ EE +++E+E E E+ E E E + E+ EE+E+E++ E E
Sbjct: 641 HQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695
Score = 53.0 bits (127), Expect = 4e-07
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ +E + ++ E EEE+E++ EE +++E+E E E+ E E E + E+ EE+E+E +
Sbjct: 632 LKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDA 691
Query: 404 EGHCDFVKLREMLIRTNME 422
E + V + + + R +
Sbjct: 692 EANEGVVPIDKAVRRALPK 710
Score = 52.6 bits (126), Expect = 6e-07
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ ++ E EEE+E++ EE +++E+E E E+ E E E + E+ EE+E+E++ E E +
Sbjct: 639 SRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVV 698
Query: 402 E 402
Sbjct: 699 P 699
Score = 49.9 bits (119), Expect = 4e-06
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ F G EE+E++ EE +++E+E E E+ E E E + E+ EE+E+E++ E E
Sbjct: 643 QLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695
Score = 42.2 bits (99), Expect = 0.001
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--- 391
D +E+E E E+ E E E + E+ EE+E+E++ E E ++
Sbjct: 651 DEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPK 710
Query: 392 ---------EEEEEEEKELENE 404
+ E+E+ +++E
Sbjct: 711 VLNLPDALDGGDSEDEEGMDDE 732
Score = 36.4 bits (84), Expect = 0.046
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEE 394
E+ E E E + E+ EE+E+E++ E E ++ + + E+EE
Sbjct: 669 EDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDGGDSEDEEG 728
Query: 395 EEEEKELE 402
++E+ +
Sbjct: 729 MDDEQMMR 736
Score = 31.8 bits (72), Expect = 1.5
Identities = 14/78 (17%), Positives = 33/78 (42%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ EE+E+E++ E E ++ + + + + E+EE ++E+ +
Sbjct: 680 EDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDGGDSEDEEGMDDEQMMRLDT 739
Query: 405 GHCDFVKLREMLIRTNME 422
K ++ I+ E
Sbjct: 740 YLAQIFKEKKERIQAGGE 757
Score = 29.5 bits (66), Expect = 7.6
Identities = 10/58 (17%), Positives = 28/58 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E+ EE+E+E++ E E ++ + + + + E+EE +++++
Sbjct: 678 DGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDGGDSEDEEGMDDEQMM 735
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 53.1 bits (128), Expect = 3e-07
Identities = 12/81 (14%), Positives = 54/81 (66%)
Query: 325 NPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
D +L D N +++++++++++ ++++ ++++++E+++E++++++ ++E+E
Sbjct: 111 ALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDE 170
Query: 385 EEEEEEEEEEEEEEKELENEG 405
E++E +E E+ ++ + +
Sbjct: 171 EKKEAKELEKLSDDDDFVWDE 191
Score = 51.5 bits (124), Expect = 9e-07
Identities = 10/61 (16%), Positives = 48/61 (78%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++++++ ++++ ++++++E+++E++++++ ++E+EE++E +E E+ ++++ E ++
Sbjct: 135 DDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDS 194
Query: 404 E 404
E
Sbjct: 195 E 195
Score = 51.1 bits (123), Expect = 1e-06
Identities = 9/66 (13%), Positives = 51/66 (77%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L + +++++++++++ ++++ ++++++E+++E++++++ ++E+EE++E +E E+ + ++
Sbjct: 127 LNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDD 186
Query: 404 EGHCDF 409
+
Sbjct: 187 FVWDED 192
Score = 51.1 bits (123), Expect = 1e-06
Identities = 12/71 (16%), Positives = 47/71 (66%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ D + L++++ ++++++E+++E++++++ ++E+EE++E +E E+ +++
Sbjct: 126 VLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDD 185
Query: 388 EEEEEEEEEEE 398
+ +E++ E
Sbjct: 186 DFVWDEDDSEA 196
Score = 50.4 bits (121), Expect = 2e-06
Identities = 9/66 (13%), Positives = 49/66 (74%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ +++++++++++ ++++ ++++++E+++E++++++ ++E+EE++E +E E+ + +
Sbjct: 129 QADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFV 188
Query: 405 GHCDFV 410
D
Sbjct: 189 WDEDDS 194
Score = 50.4 bits (121), Expect = 2e-06
Identities = 13/85 (15%), Positives = 52/85 (61%)
Query: 320 KVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
K N D ++ + D + +++ ++++ ++++++E+++E++++++ ++E+EE++
Sbjct: 114 KDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKK 173
Query: 380 EEEEEEEEEEEEEEEEEEEKELENE 404
E +E E+ ++++ +E+
Sbjct: 174 EAKELEKLSDDDDFVWDEDDSEALR 198
Score = 50.0 bits (120), Expect = 3e-06
Identities = 8/83 (9%), Positives = 52/83 (62%)
Query: 320 KVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
+ ++ + + +++++++ ++++ ++++++E+++E++++++ ++E+
Sbjct: 110 NALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDED 169
Query: 380 EEEEEEEEEEEEEEEEEEEKELE 402
EE++E +E E+ ++++ + +
Sbjct: 170 EEKKEAKELEKLSDDDDFVWDED 192
Score = 48.5 bits (116), Expect = 7e-06
Identities = 10/61 (16%), Positives = 43/61 (70%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ ++++++E+++E++++++ ++E+EE++E +E E+ ++++ +E++ E + +
Sbjct: 145 DDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDA 204
Query: 404 E 404
+
Sbjct: 205 K 205
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 48.6 bits (116), Expect = 3e-07
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEKE 400
G ++E E EE+ EEEE+ E EE++ EEE +E EEEE EEEE++E EE EK
Sbjct: 28 GSVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKA 87
Query: 401 LEN 403
L+
Sbjct: 88 LQE 90
Score = 43.6 bits (103), Expect = 2e-05
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE+ EEEE+ E EE++ EEE +E EEEE EEEE++E EE E+ +EK
Sbjct: 37 LTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQEK 91
Score = 42.8 bits (101), Expect = 3e-05
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE+ EEEE+ E EE++ EEE +E EEEE EEEE++E EE E+ +E+ K L
Sbjct: 39 EEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQEKRKALPA 97
Score = 42.4 bits (100), Expect = 5e-05
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L EE+ EEEE+ E EE++ EEE +E EEEE EEEE++E EE E+ +E++
Sbjct: 37 LTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQEKR 92
Score = 42.0 bits (99), Expect = 7e-05
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E E EE+ EEEE+ E EE++ EEE +E EEEE E+E + E
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 33.5 bits (77), Expect = 0.065
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++E E EE+ EEEE+ E EE++ EEE +E +E E E
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEE 73
Score = 30.1 bits (68), Expect = 1.2
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
EEE +E EEEE EEEE++E EE E+ +E
Sbjct: 52 EKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQE 90
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 53.2 bits (127), Expect = 4e-07
Identities = 27/100 (27%), Positives = 56/100 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE+++ EE ++ EEE + + EE ++ EE++++ EE ++ EE+E++ E +KE E
Sbjct: 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ +K +E + E++++ + K+ EE
Sbjct: 1702 KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
Score = 49.8 bits (118), Expect = 5e-06
Identities = 26/100 (26%), Positives = 57/100 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E+ +++E EE+++ EE ++ EEE + + EE ++ EE++++ EE ++ EE+E++
Sbjct: 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
+ + K E L + E+ ++ + E K + EE
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
Score = 49.0 bits (116), Expect = 7e-06
Identities = 29/104 (27%), Positives = 58/104 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE + + EE ++ EE++++ EE ++ EE+E++ E ++E EE ++ EE ++KE E +
Sbjct: 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVI 448
+ +K E + E+ +++ + K+ EEE I
Sbjct: 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
Score = 47.1 bits (111), Expect = 3e-05
Identities = 27/99 (27%), Positives = 53/99 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE ++ EEE + + EE ++ EE++++ EE ++ EE+E++ E ++E EE ++ E +
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
+ K E L + E+ + + KK+ EE
Sbjct: 1710 KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
Score = 46.3 bits (109), Expect = 5e-05
Identities = 28/103 (27%), Positives = 59/103 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE+++ E+ +++E EE+++ EE ++ EEE + + EE ++ EE++++ EE +K E+E
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV 447
+E E++++K + K+ EEE+ +
Sbjct: 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
Score = 45.5 bits (107), Expect = 1e-04
Identities = 27/96 (28%), Positives = 59/96 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +++E EE+++ EE ++ EEE + + EE ++E EE++++ EE +++EEE+++ L+ E
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKR 440
++R+ E++ E+ R E+ +K +
Sbjct: 1766 EEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
Score = 44.4 bits (104), Expect = 2e-04
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L++E EE ++ EE +++E EE+++ EE ++ EEE + + EE ++E EE++++ EE + +
Sbjct: 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRK--KRLEEESNVIGSNFRWSDFSAKT 461
E L++ + E +EK EL + KR E I F +F+
Sbjct: 1754 EEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF--DNFANII 1811
Query: 462 RFGWDYLPYINTGKRL 477
G + IN K +
Sbjct: 1812 EGGKEGNLVINDSKEM 1827
Score = 44.0 bits (103), Expect = 3e-04
Identities = 27/99 (27%), Positives = 54/99 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + + EE ++ EEE+++ E+ +++E EE+++ EE ++ EEE + + EE ++ E + +
Sbjct: 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
+ K E + +E + E +KK EE
Sbjct: 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
Score = 43.2 bits (101), Expect = 4e-04
Identities = 27/100 (27%), Positives = 54/100 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++ EE ++ EE + + EE ++ EEE+++ E+ +++E EE+++ EE ++ EEE + K E
Sbjct: 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
+ K + + ED ++ E K+ EE
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
Score = 41.3 bits (96), Expect = 0.002
Identities = 26/102 (25%), Positives = 55/102 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L EEE++ + EE ++ EE + + EE ++ EEE+++ E+ +++E EE+++ EE ++ E EN
Sbjct: 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445
+ + + E+ ++ K+ EE+
Sbjct: 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
Score = 39.4 bits (91), Expect = 0.007
Identities = 27/85 (31%), Positives = 52/85 (61%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N ++ EE ++E EE++++ EE +++EEE+++ ++EEE++ EE +E+E EEE +
Sbjct: 1728 NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
Query: 402 ENEGHCDFVKLREMLIRTNMEDMRE 426
E+E V + I N ++ E
Sbjct: 1788 EDEKRRMEVDKKIKDIFDNFANIIE 1812
Score = 38.6 bits (89), Expect = 0.013
Identities = 24/99 (24%), Positives = 57/99 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E ++ EE ++ +E ++ EE ++ +E ++ EE+++ +E ++ EE ++ EE+++ +E +
Sbjct: 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKA 1572
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
+ LR+ E+ R + + YE +K + EE
Sbjct: 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
Score = 38.2 bits (88), Expect = 0.015
Identities = 22/103 (21%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE ++ +E +++ EE +++ +E ++ E +++ +E ++ EE ++ +E ++ EE K+ +
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV 447
+ K + L + E++++ + E K+ EE+ N+
Sbjct: 1540 KKAEEKKKADELKKA--EELKKAEEKKKAE--EAKKAEEDKNM 1578
Score = 37.8 bits (87), Expect = 0.020
Identities = 27/101 (26%), Positives = 50/101 (49%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE ++ EE++ + EE ++ EE EE + EEE++ + EE ++ EE + K E +
Sbjct: 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445
+ K E L + E+ ++ + E K + EE+
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA 1667
Score = 37.8 bits (87), Expect = 0.024
Identities = 28/100 (28%), Positives = 50/100 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L + EE ++ EE EE + EEE++ + EE ++ EE + + EE ++ EEE+++ E
Sbjct: 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
+ + K E L + E+ + KK+ EE
Sbjct: 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
Score = 36.3 bits (83), Expect = 0.073
Identities = 21/98 (21%), Positives = 49/98 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ +++ EE ++ E + E E +E E EE+ E E+++EE +++ + +K+ E +
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Query: 406 HCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
D K + + +++++ + KK+ EE
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
Score = 35.5 bits (81), Expect = 0.11
Identities = 22/98 (22%), Positives = 47/98 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE +++ + +++ EE ++ E + E E +E E EE+ E E+++EE ++K +
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442
+ K + + ED ++ + +KK E
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE 1422
Score = 35.5 bits (81), Expect = 0.12
Identities = 14/60 (23%), Positives = 40/60 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE ++ +E +++ EE ++ +E +++ EE +++ +E ++ E +++ +E ++ EE + +E
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADE 1526
Score = 35.1 bits (80), Expect = 0.13
Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------E 396
+E ++ EE ++ +E ++ EE+++ +E ++ EE ++ EE+++ EE ++ EE E
Sbjct: 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE 1584
Query: 397 EEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV 447
E K+ E + +KL E + E+ ++ + KK EE+ V
Sbjct: 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
Score = 34.7 bits (79), Expect = 0.17
Identities = 18/99 (18%), Positives = 55/99 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++ EE+++ +E +++ EE++++ +E ++ +++ +E +++ EE+++ +E +K+ E
Sbjct: 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442
D K + + E ++ + + +KK E
Sbjct: 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
Score = 34.7 bits (79), Expect = 0.18
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
E+ + E + EEE + EE + E+ ++ E ++ EE +++ EE ++ E+E NE
Sbjct: 1197 EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
Query: 409 FVKLR 413
F + R
Sbjct: 1257 FEEAR 1261
Score = 34.7 bits (79), Expect = 0.18
Identities = 22/98 (22%), Positives = 50/98 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + E E +E E EE+ E E+++EE +++ + +++ EE+++ +E ++K E++
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442
D +K + E ++ + + +KK E
Sbjct: 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
Score = 34.7 bits (79), Expect = 0.19
Identities = 21/98 (21%), Positives = 44/98 (44%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E+ + E + EEE + EE + E+ ++ E ++ EE +++ EE ++ EEE+ E
Sbjct: 1197 EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
Query: 407 CDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ ++ R E + +K+ +E
Sbjct: 1257 FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE 1294
Score = 34.7 bits (79), Expect = 0.20
Identities = 18/97 (18%), Positives = 54/97 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++EE +++ + +++ EE+++ +E +++ EE++++ +E ++ +++ +E +K+ E +
Sbjct: 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Query: 406 HCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442
D K + + E ++ + E +KK E
Sbjct: 1432 KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
Score = 34.7 bits (79), Expect = 0.21
Identities = 21/98 (21%), Positives = 53/98 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E EE+ E E+++EE +++ + +++ EE+++ +E +++ EE++++ +E +K +
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAK 1417
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442
D K + + E ++ + + +KK E
Sbjct: 1418 KKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455
Score = 34.3 bits (78), Expect = 0.25
Identities = 17/82 (20%), Positives = 49/82 (59%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+++ EE+++ +E +++ EE ++ +E +++ EE ++ EE +++ EE ++ +E +K+ E
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
Query: 406 HCDFVKLREMLIRTNMEDMREK 427
D K + + ++ ++
Sbjct: 1484 KADEAKKKAEEAKKKADEAKKA 1505
Score = 34.0 bits (77), Expect = 0.30
Identities = 16/60 (26%), Positives = 42/60 (70%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+++ +E +++ EE ++ +E +++ EE ++ EE +++ EE ++ +E +++ EE + +E
Sbjct: 1428 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE 1487
Score = 34.0 bits (77), Expect = 0.30
Identities = 15/60 (25%), Positives = 40/60 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E ++ EE +++ EE ++ +E +++ EE ++ +E +++ EE +++ +E ++ E K+ +E
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
Score = 33.6 bits (76), Expect = 0.38
Identities = 15/58 (25%), Positives = 41/58 (70%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE + +E ++ EE+++ +E ++ EE+++ +E +++ EE ++ +E +++ EE +K+ +
Sbjct: 1275 EEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332
Score = 33.6 bits (76), Expect = 0.41
Identities = 14/60 (23%), Positives = 41/60 (68%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+++ +E ++ EE+++ +E +++ EE ++ +E +++ EE +++ + +++ EE + E
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
Score = 33.6 bits (76), Expect = 0.44
Identities = 21/98 (21%), Positives = 47/98 (47%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE ++ +E +++ EE +++ + +++ EE ++ E + E E +E E EEK E
Sbjct: 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Query: 406 HCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
+ K + + E+ ++ + KK+ +E
Sbjct: 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
Score = 33.6 bits (76), Expect = 0.46
Identities = 11/59 (18%), Positives = 40/59 (67%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++EE +++ + +++ EE+++ +E +++ EE++++ +E ++ +++ +E ++K E
Sbjct: 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
Score = 33.6 bits (76), Expect = 0.48
Identities = 16/69 (23%), Positives = 42/69 (60%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+++ EE ++ +E +++ EE ++ +E +++ EE +++ +E ++ E +++ +E K+ E
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
Query: 406 HCDFVKLRE 414
D K E
Sbjct: 1523 KADEAKKAE 1531
Score = 33.2 bits (75), Expect = 0.51
Identities = 18/71 (25%), Positives = 44/71 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++ EE ++ EE +++ EE ++ +E +++ EE ++ +E +++ EE +++ +E +K E
Sbjct: 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
Query: 404 EGHCDFVKLRE 414
+ D K E
Sbjct: 1509 KKKADEAKKAE 1519
Score = 33.2 bits (75), Expect = 0.55
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + E+ + E + EEE + EE + E+ ++ E ++ EE +++ EE K+ E E
Sbjct: 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEE 1248
Score = 33.2 bits (75), Expect = 0.58
Identities = 17/71 (23%), Positives = 43/71 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++ EE ++ +E +++ EE ++ EE +++ EE ++ +E +++ EE ++ +E ++K E
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495
Query: 404 EGHCDFVKLRE 414
+ D K
Sbjct: 1496 KKKADEAKKAA 1506
Score = 33.2 bits (75), Expect = 0.61
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEE 396
+E ++ EE+++ +E ++ EE ++ EE+++ EE ++ EE+ EE ++ EE EE
Sbjct: 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
Query: 397 EEKELENEGHCDFVKLR-EMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
K E E + + + E++++ + KK+ EE
Sbjct: 1597 VMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
Score = 32.8 bits (74), Expect = 0.66
Identities = 15/70 (21%), Positives = 42/70 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E ++ EE+++ +E ++ EE+++ +E +++ EE ++ +E +++ EE +++ + +K+ E
Sbjct: 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA 1341
Query: 405 GHCDFVKLRE 414
E
Sbjct: 1342 KKAAEAAKAE 1351
Score = 32.8 bits (74), Expect = 0.72
Identities = 15/59 (25%), Positives = 40/59 (67%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + +E ++ EE+++ +E ++ EE+++ +E +++ EE ++ +E +++ EE K+ +
Sbjct: 1275 EEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
Score = 32.8 bits (74), Expect = 0.79
Identities = 13/56 (23%), Positives = 33/56 (58%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E +++ EE ++ +E +++ EE +++ + +++ EE ++ E + E E E E
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
Score = 32.4 bits (73), Expect = 0.86
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE ++ +E +++ EE +++ + +++ EE ++ E + E E +E E EE+ E
Sbjct: 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Score = 32.4 bits (73), Expect = 1.0
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
EEE + EE + E+ ++ E ++ EE +++ EE ++ EEE EE + EE
Sbjct: 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
Score = 32.4 bits (73), Expect = 1.0
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EEE + EE + E+ ++ E ++ EE +++ EE ++ EEE EE + EE
Sbjct: 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
Score = 32.4 bits (73), Expect = 1.1
Identities = 19/90 (21%), Positives = 49/90 (54%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
+E +++ EE ++ +E +++ EE ++ EE +++ EE ++ +E +++ EE +K E + +
Sbjct: 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
Query: 409 FVKLREMLIRTNMEDMREKTHCRHYELYRK 438
K + + E ++ + E +K
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Score = 32.0 bits (72), Expect = 1.2
Identities = 18/67 (26%), Positives = 37/67 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E +++ EE +++ + +++ EE ++ E + E E +E E EE+ E E+K+ E +
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Query: 405 GHCDFVK 411
D K
Sbjct: 1378 KKADAAK 1384
Score = 32.0 bits (72), Expect = 1.2
Identities = 16/60 (26%), Positives = 40/60 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +++ EE ++ +E +++ EE ++ EE +++ EE ++ +E +++ EE ++ +E K+ E
Sbjct: 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494
Score = 32.0 bits (72), Expect = 1.2
Identities = 14/63 (22%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEK 399
E EE+ E E+++EE +++ + +++ EE+++ +E +++ EE++++ +E +K
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 400 ELE 402
+ +
Sbjct: 1419 KAD 1421
Score = 32.0 bits (72), Expect = 1.3
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
EE + E+ ++ E + EE + EE + E+ + E + EEE + EE ++ E+
Sbjct: 1167 EEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKA 1226
Query: 408 DFVKLREMLIRTNMEDMREKTHCRHYELYRK 438
+ VK E + + E+ ++ R+ E RK
Sbjct: 1227 EAVKKAEE-AKKDAEEAKKAEEERNNEEIRK 1256
Score = 32.0 bits (72), Expect = 1.3
Identities = 15/60 (25%), Positives = 41/60 (68%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E +++ EE ++ +E +++ EE ++ EE +++ EE ++ +E +++ EE ++ +E + + E
Sbjct: 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
Score = 32.0 bits (72), Expect = 1.4
Identities = 14/60 (23%), Positives = 41/60 (68%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E ++ EE+++ +E ++ EE+++ +E +++ EE ++ +E +++ EE +++ + K+ E
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340
Score = 31.6 bits (71), Expect = 1.6
Identities = 18/96 (18%), Positives = 48/96 (50%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
EE+++ +E ++ EE+++ +E +++ EE ++ +E +++ EE +++ + ++K E + +
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
Query: 409 FVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
K E EK + K+ +
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382
Score = 31.6 bits (71), Expect = 1.6
Identities = 20/98 (20%), Positives = 54/98 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+++ +E +++ EE+++ +E +++ EE ++ +E +++ EE ++ EE +++ EE +K E +
Sbjct: 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442
+ K + + E ++ + +KK E
Sbjct: 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
Score = 31.6 bits (71), Expect = 1.7
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 334 SFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
S+ D + + +E EE + EE ++ E + EE + EE +++ E+ + EE
Sbjct: 1075 SYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEAR 1134
Query: 394 EEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRK 438
+ E+ ++ E + K E+ + ED R+ R E +K
Sbjct: 1135 KAEDARKAEEARKAEDAKRVEIARK--AEDARKAEEARKAEDAKK 1177
Score = 31.6 bits (71), Expect = 1.7
Identities = 16/70 (22%), Positives = 42/70 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E ++ EE+++ +E +++ EE ++ +E +++ EE +++ + +++ EE ++ E + E E
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353
Query: 405 GHCDFVKLRE 414
D + E
Sbjct: 1354 AAADEAEAAE 1363
Score = 31.3 bits (70), Expect = 2.1
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ EEE + EE + E+ ++ E ++ EE +++ EE ++ EEE EE + +E
Sbjct: 1204 AARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
Score = 31.3 bits (70), Expect = 2.2
Identities = 13/59 (22%), Positives = 38/59 (64%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ EE+++ +E +++ EE ++ +E +++ EE +++ + +++ EE ++ E + E E
Sbjct: 1295 AKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353
Score = 31.3 bits (70), Expect = 2.3
Identities = 17/72 (23%), Positives = 43/72 (59%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+F + + EE + +E ++ EE+++ +E ++ EE+++ +E +++ EE ++ +E ++K
Sbjct: 1264 HFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
Query: 400 ELENEGHCDFVK 411
E + D K
Sbjct: 1324 AEEAKKKADAAK 1335
Score = 30.5 bits (68), Expect = 3.4
Identities = 21/98 (21%), Positives = 42/98 (42%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE + EE + E+ + E + EEE + EE + E+ ++ E ++ EE +K+ E
Sbjct: 1185 EEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKK 1244
Query: 407 CDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ + E + + M + + R +E
Sbjct: 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADE 1282
Score = 30.5 bits (68), Expect = 3.7
Identities = 13/57 (22%), Positives = 41/57 (71%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L++ EE+++ +E ++ EE+++ +E +++ EE ++ +E +++ EE +++ + +++ E
Sbjct: 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAE 1339
Score = 30.5 bits (68), Expect = 4.3
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E+ ++ E + EE + EE + E+ + E + EEE + EE + E+ K+ E
Sbjct: 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKA 1232
Query: 408 DFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVI 448
+ K + E+ R R +E R I
Sbjct: 1233 EEAKKDAEEAK-KAEEERNNEEIRKFEEARMAHFARRQAAI 1272
Score = 29.7 bits (66), Expect = 6.3
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
K + EE + E+ ++ E ++ EE +++ EE ++ EEE EE + EE
Sbjct: 1207 KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 52.5 bits (126), Expect = 5e-07
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EKELE 402
E+ E EE E +E EE+E E + E EE E + E E+ E +E +E+ E E
Sbjct: 245 EDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDARP 304
Query: 403 NEGHCDFVKLREMLIRTN-------MEDMREKTHCRHYELYRKKRLEEESNVIGS 450
+ ++ + + T E++ ++ + K+L S V+G
Sbjct: 305 ATPFTELMEEVDYKVFTREFDEIVLAEELCDEAELDRLRAFLDKQLAHLSGVVGR 359
Score = 51.0 bits (122), Expect = 2e-06
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ EE ++ EE+ +EE+ ++++ + E+ E EE E +E EE+E E + E +E E
Sbjct: 217 DMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGE 276
Query: 403 NEG 405
+
Sbjct: 277 MDA 279
Score = 51.0 bits (122), Expect = 2e-06
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E+ E EE E +E EE+E E + E EE E + E E+ E +E +E+ E E
Sbjct: 242 DNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGED 301
Score = 50.2 bits (120), Expect = 2e-06
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE+ +EE+ ++++ + E+ E EE E +E EE+E E + E EE E + E +
Sbjct: 228 EEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSE 287
Query: 407 CD 408
D
Sbjct: 288 SD 289
Score = 49.8 bits (119), Expect = 3e-06
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 343 GLEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
G+EE+ +EE+ ++ E+ E EE E +E EE+E E + E EE E + E E+
Sbjct: 226 GIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASED 285
Query: 397 EEKELENEG 405
E + +E
Sbjct: 286 SESDESDED 294
Score = 48.7 bits (116), Expect = 8e-06
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+G +++ + E+ E EE E +E EE+E E + E EE E + E E+ E +E E
Sbjct: 235 DGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDE 293
Score = 46.0 bits (109), Expect = 6e-05
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
G EE E +E EE+E E + E EE E + E E+ E +E +E+ E E
Sbjct: 249 AGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGE 300
Score = 44.1 bits (104), Expect = 2e-04
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
EE ++ EE+ +EE+ ++++ + E+ E EE E +E EE+E E EG D
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMD 278
Score = 41.4 bits (97), Expect = 0.001
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
D + F + + + EE ++ EE+ +EE+ ++++ + E+ E EE E +E
Sbjct: 201 DQQAFARVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDES 260
Query: 397 EEKELE 402
EE E E
Sbjct: 261 EEDEAE 266
Score = 31.4 bits (71), Expect = 1.8
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+GL E ++++ + + EE ++ EE+ +EE+ ++++ + E+ E
Sbjct: 193 DGLAAEIDDQQAFARVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGRE 252
Query: 402 ENEG 405
E+EG
Sbjct: 253 ESEG 256
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 47.6 bits (113), Expect = 7e-07
Identities = 30/59 (50%), Positives = 40/59 (67%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
NG E EE +E ++E EEEEE +E++EEEE E EEEE EEEEE E + E+E++
Sbjct: 35 NGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEED 93
Score = 46.1 bits (109), Expect = 2e-06
Identities = 31/69 (44%), Positives = 41/69 (59%)
Query: 334 SFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
S D K + EE+E + E EE +E ++E EEEEE +E++EEEE E EEE
Sbjct: 12 SAKDLKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEE 71
Query: 394 EEEEEKELE 402
E EEE+E E
Sbjct: 72 EGEEEEETE 80
Score = 43.4 bits (102), Expect = 3e-05
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE+E + E EE +E ++E EEEEE +E++EEEE E EEEE E+E E E
Sbjct: 21 EVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETE 80
Query: 405 G 405
G
Sbjct: 81 G 81
Score = 39.9 bits (93), Expect = 4e-04
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++E EE+E + E EE +E ++E EEEEE +E++EEEE E EEE+ E E
Sbjct: 18 EKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEE 77
Score = 35.3 bits (81), Expect = 0.019
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E++E EE+E + E EE +E ++E EEEEE +E++EEEE + E EG
Sbjct: 17 KEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEG 73
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 49.5 bits (119), Expect = 8e-07
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 331 NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEEEEE 388
N Y F + N L+ E+ ++E EE ++ E + E+ ++ EE EE E EE +
Sbjct: 54 NYYWSFPSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELK 113
Query: 389 EEEEEEEEEEKELENEGHCDFVKLREM 415
+ E+E ++ + ELE D ++ ++
Sbjct: 114 QLEKELKKLKAELEKYEKNDPERIEKL 140
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 49.1 bits (117), Expect = 1e-06
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++EEE+ + + EE EE+EEE E+ E+ +EE+EE EE EEE + K E
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQE 76
Score = 47.6 bits (113), Expect = 3e-06
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++EEE+ + + EE EE+EEE E+ E+ +EE+EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSS 68
Score = 47.6 bits (113), Expect = 3e-06
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
++EEE+ + + EE EE+EEE E+ E+ +EE+EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 46.8 bits (111), Expect = 6e-06
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+EEE+ + + EE EE+EEE E+ E+ +EE+EE EE EEE + + E
Sbjct: 19 DEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQE 76
Score = 44.9 bits (106), Expect = 3e-05
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE+ + + EE EE+EEE E+ E+ +EE+EE EE EEE + + +E
Sbjct: 20 EEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQE 76
Score = 42.2 bits (99), Expect = 2e-04
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ + EE EE+EEE E+ E+ +EE+EE EE EEE + + +E
Sbjct: 25 DSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77
Score = 42.2 bits (99), Expect = 2e-04
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ EE EE+EEE E+ E+ +EE+EE EE EEE + + +E
Sbjct: 25 DSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQETIS 79
Score = 39.9 bits (93), Expect = 0.001
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E EE+EEE E+ E+ +EE+EE EE EEE + + +E
Sbjct: 27 QAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQETIS 79
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 51.6 bits (124), Expect = 1e-06
Identities = 23/34 (67%), Positives = 24/34 (70%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EEEEEEEEE EEEEEEEEEEE+ E E
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 50.0 bits (120), Expect = 2e-06
Identities = 36/94 (38%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEKELE 402
E EEEEEEEEE EEEEEEEEEEE EEE E EEE E
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEEVRATVAEAIRLLEEELTVSARRHEFF 359
Query: 403 NEGHCDFVKLREMLIRTNMEDMREKTHCRHYELY 436
N V E+L R ++ R + +Y
Sbjct: 360 NFA----VDFYELLQRLEDLGRITESFLRRWVMY 389
Score = 45.8 bits (109), Expect = 6e-05
Identities = 23/30 (76%), Positives = 23/30 (76%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
EEEEEEEEE EEEEEEEEEEE EEE
Sbjct: 304 EPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 36.5 bits (85), Expect = 0.039
Identities = 18/25 (72%), Positives = 18/25 (72%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEE 367
EEEE EEEEEEEEEEE EEE
Sbjct: 309 EEEEEEVPEEEEEEEEEEERTFEEE 333
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 52.0 bits (124), Expect = 1e-06
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEKE 400
L EE+ + ++++E+E+E++++EE++EEEEEEEEE ++E+EE+E E+ E
Sbjct: 140 LAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYE 199
Query: 401 LENEGHCDFVKLRE 414
D K E
Sbjct: 200 KSEVDKTDCFKFIE 213
Score = 50.4 bits (120), Expect = 3e-06
Identities = 22/68 (32%), Positives = 46/68 (67%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLR 413
EE+ + ++++E+E+E++++EE++EEEEEEEEE + ++++ E+EG DF +
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200
Query: 414 EMLIRTNM 421
+ +T+
Sbjct: 201 SEVDKTDC 208
Score = 50.4 bits (120), Expect = 3e-06
Identities = 22/65 (33%), Positives = 45/65 (69%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
D + ++++E+E+E++++EE++EEEEEEEEE + ++E+EE+E E+ E+ E
Sbjct: 144 DMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEV 203
Query: 397 EEKEL 401
++ +
Sbjct: 204 DKTDC 208
Score = 48.9 bits (116), Expect = 9e-06
Identities = 24/65 (36%), Positives = 45/65 (69%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++E+E+E++++EE++EEEEEEEEE + ++E+EE+E E+ E+ E ++ + + G
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTDCFKFIEAG 215
Query: 406 HCDFV 410
D V
Sbjct: 216 AGDDV 220
Score = 48.9 bits (116), Expect = 9e-06
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 325 NPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+ + S D + +E+E+E++++EE++EEEEEEEEE + ++E+EE+E E+
Sbjct: 137 ARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDF 196
Query: 385 EEEEEEEEEEE 395
E+ E ++ +
Sbjct: 197 TYEKSEVDKTD 207
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 48.6 bits (116), Expect = 1e-06
Identities = 21/56 (37%), Positives = 45/56 (80%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E++EEEE++E + ++E ++E+E+++E E E++E +E+E+++E+EE+EE+K
Sbjct: 120 YDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 47.8 bits (114), Expect = 3e-06
Identities = 20/58 (34%), Positives = 46/58 (79%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L+ +E++EEEE++E + ++E ++E+E+++E E E++E +E+E+++E+EE+E++
Sbjct: 118 LDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 47.4 bits (113), Expect = 4e-06
Identities = 22/81 (27%), Positives = 48/81 (59%)
Query: 324 SNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+K D + E +E+E + +E++EEEE++E + ++E ++E+E+++E
Sbjct: 91 IQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIV 150
Query: 384 EEEEEEEEEEEEEEEKELENE 404
E E++E +E+E++ E E +
Sbjct: 151 EILIEDDEVDEDEDDDEDEED 171
Score = 42.8 bits (101), Expect = 1e-04
Identities = 18/61 (29%), Positives = 44/61 (72%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+++ + +++E + EE +E+E + +E++EEEE++E + ++E ++E+E+++E E+ E
Sbjct: 96 EKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIE 155
Query: 405 G 405
Sbjct: 156 D 156
Score = 41.3 bits (97), Expect = 4e-04
Identities = 16/59 (27%), Positives = 41/59 (69%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+++ + +++E + EE +E+E + +E++EEEE++E + ++E ++E+E++ E+
Sbjct: 95 TEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEIL 153
Score = 39.7 bits (93), Expect = 0.001
Identities = 15/47 (31%), Positives = 35/47 (74%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E + ++E ++E+E+++E E E++E +E+E+++E+EE+EE++
Sbjct: 129 DDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 35.9 bits (83), Expect = 0.025
Identities = 13/41 (31%), Positives = 31/41 (75%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+ ++E+E+++E E E++E +E+E+++E+EE+EE++
Sbjct: 135 LDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 34.7 bits (80), Expect = 0.062
Identities = 13/41 (31%), Positives = 31/41 (75%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+ ++E+E+++E E E++E +E+E+++E+EE+EE++
Sbjct: 135 LDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 34.0 bits (78), Expect = 0.10
Identities = 17/57 (29%), Positives = 39/57 (68%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E +EE + E+++ + +++E + EE +E+E + +E++EEEE++E + + EN+
Sbjct: 85 DEIDEEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDD 141
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 48.2 bits (115), Expect = 1e-06
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+NL + + K F L ++EEEE EEE +E E+E+ E + E +E+++ E + + E+
Sbjct: 79 RNLPAMW--KIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEK 136
Query: 390 EEEEEE 395
E+ + E
Sbjct: 137 EKPKTE 142
Score = 45.5 bits (108), Expect = 1e-05
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++EEEE EEE +E E+E+ E + E +E+++ E + + E+E+ + E
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEP 143
Score = 45.1 bits (107), Expect = 2e-05
Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++EEEE EEE +E E+E+ E + E +E+++ E + + E+E+ + E K
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144
Score = 45.1 bits (107), Expect = 2e-05
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++EEEE EEE +E E+E+ E + E +E+++ E + + E+E+ + E +K
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
Score = 44.0 bits (104), Expect = 3e-05
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++EEEE EEE +E E+E+ E + E +E+++ E + + E+EK
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKT 141
Score = 41.7 bits (98), Expect = 2e-04
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++EEEE EEE +E E+E+ E + E +E+++ E + + EKE
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 32.0 bits (73), Expect = 0.38
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 376 EEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
++EEEE EEE +E E+E+ E + E++
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEK 124
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 51.1 bits (122), Expect = 2e-06
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+EEE+EE+ + +EEE EEE +EE E EEE+ E+EE+ +EEE EE E KE
Sbjct: 787 LKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEE 846
Query: 402 ENEGHCDFVKLREMLIRTNMEDM-REKTHCRHYELYRKKRLEEESN 446
+ +L + E++ +E +K + E ES
Sbjct: 847 QKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 892
Score = 50.7 bits (121), Expect = 2e-06
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+ +++E ++ EE E E + EE + +E + +E+ ++ E + +E+ E E EN
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Query: 404 EGHCDFVKLREMLIRTNMEDMREK 427
+ D++KL E I E +R++
Sbjct: 227 LLYLDYLKLNEERIDLLQELLRDE 250
Score = 49.6 bits (118), Expect = 4e-06
Identities = 31/100 (31%), Positives = 50/100 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE +EE E EEE+ E+EE+ +EEE EE E +EE++ E+ EEE E E E
Sbjct: 806 ALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEIT 865
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+L + ++++ + + +K+ EE
Sbjct: 866 KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEE 905
Score = 48.4 bits (115), Expect = 1e-05
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K L EEE+ E+EE+ +EEE EE E +EE++ E+ EEE E EEE +EE +
Sbjct: 812 KEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQ 871
Query: 399 KELENEGHCDFVKLREMLIRTNMEDMREK 427
+ L E + KL++ L ++ EK
Sbjct: 872 ELLLKEEELEEQKLKDELESKEEKEKEEK 900
Score = 48.0 bits (114), Expect = 2e-05
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ K EEEE+ ++EEEEEE+ E +E+E EEEE+ E+ + EEE+EE
Sbjct: 736 NEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEE 795
Query: 390 EEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV 447
+ + +EEE + LE E +K L+ + ++ + EL +E
Sbjct: 796 KLKAQEEELRALEEE-----LKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK 848
Score = 47.7 bits (113), Expect = 2e-05
Identities = 34/101 (33%), Positives = 56/101 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ + EEE+EE+ + +EEE EEE +EE E EEE+ E+EE+ +EEE EE LE +
Sbjct: 785 EKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELK 844
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445
KL E + E++ ++ + L ++ E++
Sbjct: 845 EEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKL 885
Score = 47.7 bits (113), Expect = 2e-05
Identities = 30/85 (35%), Positives = 51/85 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E+EE+ +EEE EE E +EE++ E+ EEE E EEE +EE +E +E+ELE
Sbjct: 823 LLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEE 882
Query: 404 EGHCDFVKLREMLIRTNMEDMREKT 428
+ D ++ +E + +++ E++
Sbjct: 883 QKLKDELESKEEKEKEEKKELEEES 907
Score = 46.9 bits (111), Expect = 4e-05
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E ++E+EE EE E+E +E E + E EEEEEE+ E+ +E+ E+ EEE +++ E E +
Sbjct: 330 ELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSS 389
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445
+ E+ E E K+ +EE
Sbjct: 390 AAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEEL 430
Score = 46.1 bits (109), Expect = 6e-05
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ L EE + +E +E+EE E ++E E+EEE + +E +EEE+E++ +EEE K
Sbjct: 232 YLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKL 291
Query: 401 LENE 404
L E
Sbjct: 292 LAKE 295
Score = 45.7 bits (108), Expect = 8e-05
Identities = 27/61 (44%), Positives = 43/61 (70%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE+ +E E+E ++ E+E ++E+EE EE E+E +E E + E EEEEEE+ E+ +EK +
Sbjct: 313 DEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQL 372
Query: 404 E 404
E
Sbjct: 373 E 373
Score = 45.3 bits (107), Expect = 9e-05
Identities = 31/115 (26%), Positives = 52/115 (45%)
Query: 333 YSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ + ++EEEEEE+ E +E+E EEEE+ E+ + EEE+EE+ + +EEE
Sbjct: 746 IKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELR 805
Query: 393 EEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV 447
EEE KE + + + + E + + K EE +
Sbjct: 806 ALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL 860
Score = 44.6 bits (105), Expect = 2e-04
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L +E+EE E ++E E+EEE + +E +EEE+E++ +EEE + +EEEE + E
Sbjct: 243 LQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSE 302
Query: 401 LENE 404
L
Sbjct: 303 LLKL 306
Score = 44.6 bits (105), Expect = 2e-04
Identities = 24/69 (34%), Positives = 43/69 (62%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ L +E +E+EE E ++E E+EEE + +E +EEE+E++ +EEE +
Sbjct: 234 KLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLA 293
Query: 396 EEEKELENE 404
+EE+EL++E
Sbjct: 294 KEEEELKSE 302
Score = 44.2 bits (104), Expect = 2e-04
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++ EE + E++ +E+EEEEE+ ++EEEEEE+ E +E+E EEEE+ EK
Sbjct: 731 AQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVE 790
Query: 404 EGHCDFVKLREMLIRTNMEDMREK 427
E + +K +E +R E+++E+
Sbjct: 791 EEKEEKLKAQEEELRALEEELKEE 814
Score = 43.4 bits (102), Expect = 4e-04
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E EE EE +E+E+EE+ +EEEEE + +EE E EE++E N+
Sbjct: 934 YESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNK 993
Query: 405 GHCDFVKLRE 414
+L E
Sbjct: 994 DELKKERLEE 1003
Score = 43.4 bits (102), Expect = 4e-04
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEEEE + +EE E EE+EE ++E ++E EEE++E +E+ E
Sbjct: 957 EEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEET 1016
Query: 406 HCDFVKLREMLIRTNMED 423
F + E+ + N
Sbjct: 1017 CQRFKEFLELFVSINRGL 1034
Score = 43.0 bits (101), Expect = 5e-04
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E EEE E+ +++E ++ EE E E + EE + +E + +E+ +K L
Sbjct: 152 KPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKAL 211
Query: 402 ENEGHCDFVKLREMLIRTNMEDMREKTHCRHY--ELYRKKRLEEESNVI 448
E +K + L N+ + L R E+E
Sbjct: 212 EYY----QLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIES 256
Score = 43.0 bits (101), Expect = 5e-04
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E +E+E+EE+ +EEEEE + +EE E EE+EE ++E +++
Sbjct: 941 LLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKER 1000
Query: 401 LENE 404
LE E
Sbjct: 1001 LEEE 1004
Score = 43.0 bits (101), Expect = 6e-04
Identities = 34/102 (33%), Positives = 56/102 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ +E E+E ++ E+E ++E+EE EE E+E +E E + E EEEEEE+ E+ +E+ E E
Sbjct: 315 EKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEE 374
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESN 446
KL + + + E+ ++ E K L E S
Sbjct: 375 ELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSE 416
Score = 43.0 bits (101), Expect = 6e-04
Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++ EE + E++ +E+EEEEE+ ++EEEEEE+ E +E+E EEEE+ ++L+
Sbjct: 730 EAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKV 789
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E + + +E+ ++ E EE+
Sbjct: 790 EEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEK 830
Score = 42.3 bits (99), Expect = 8e-04
Identities = 25/60 (41%), Positives = 43/60 (71%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++EE+ +E E+E ++ E+E ++E+EE EE E+E +E E + E EEEEEE+ E+ +E +
Sbjct: 312 DDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQ 371
Score = 42.3 bits (99), Expect = 8e-04
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ EE EE +E+E+EE+ +EEEEE + +EE E EE+EE +
Sbjct: 934 YESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNK 993
Query: 401 LENE 404
E +
Sbjct: 994 DELK 997
Score = 42.3 bits (99), Expect = 8e-04
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
++K N EE+E++ +EEE + +EEEE + E + E + ++EE+ +E
Sbjct: 261 LEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 320
Query: 387 EEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESN 446
E+E ++ E+E +KE E + + R E+ E+ +L K EE
Sbjct: 321 EKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQL----EKLQEKLEQLEEEL 376
Query: 447 VIGSNFRWSDFSAKTRFGWDYLPYINTGKRLPKIILHLS 485
+ S+ + + L N ++ K++L LS
Sbjct: 377 LAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELS 415
Score = 42.3 bits (99), Expect = 0.001
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ +EE E EE+EE ++E ++E EEE++E E EE +
Sbjct: 962 RNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFK 1021
Query: 404 EGHCDFV 410
E FV
Sbjct: 1022 EFLELFV 1028
Score = 42.3 bits (99), Expect = 0.001
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE +E+E+EE+ +EEEEE + +EE E EE+EE ++E +KE
Sbjct: 943 LEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLE 1002
Query: 404 EGHCDFVKLREML 416
E + ++
Sbjct: 1003 EEKKELLREIIEE 1015
Score = 41.5 bits (97), Expect = 0.002
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 334 SFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EE + E++ +E+EEEEE+ ++EEEEEE+ E +E+E EEEE+ E
Sbjct: 726 DKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTE 785
Query: 394 EEEEEKELE 402
+ + E+E E
Sbjct: 786 KLKVEEEKE 794
Score = 41.1 bits (96), Expect = 0.002
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EEEEEE+ E+ +E+ E+ EEE +++ E E + +EEE E + EEEKE +
Sbjct: 352 REAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLL 411
Query: 405 GHCDFVKLREMLIRTNMEDMREKT 428
+ + E +
Sbjct: 412 LELSEQEEDLLKEEKKEELKIVEE 435
Score = 41.1 bits (96), Expect = 0.002
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L+ + EE + +E +E+EE E ++E E+EEE + +E +EEE+E++ +E E
Sbjct: 230 LDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEE 288
Score = 41.1 bits (96), Expect = 0.002
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N +EE E EE+EE ++E ++E EEE++E E EE + +
Sbjct: 963 NKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKE 1022
Query: 402 ENEG 405
E
Sbjct: 1023 FLEL 1026
Score = 41.1 bits (96), Expect = 0.002
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E+E+EE+ +EEEEE + +EE E EE+EE ++E ++E
Sbjct: 942 LLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERL 1001
Query: 400 ELE 402
E E
Sbjct: 1002 EEE 1004
Score = 40.7 bits (95), Expect = 0.002
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + EE + +E +E+EE E ++E E+EEE + +E +EEE+EK+L+ E
Sbjct: 231 DYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEE 287
Score = 40.7 bits (95), Expect = 0.002
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N +EE EE + E E EE EE +E+E+EE+ +EEEEE + +EE
Sbjct: 918 NEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVN 977
Query: 402 EN 403
Sbjct: 978 LM 979
Score = 40.7 bits (95), Expect = 0.003
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ + E E EE EE +E+E+EE+ +EEEEE + +EE E E
Sbjct: 926 EEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFE 985
Query: 401 LENE 404
+ E
Sbjct: 986 EKEE 989
Score = 40.7 bits (95), Expect = 0.003
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E E EE EE +E+E+EE+ +EEEEE + +EE E EE+
Sbjct: 928 AIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEK 987
Query: 398 EKE 400
E+
Sbjct: 988 EER 990
Score = 40.3 bits (94), Expect = 0.003
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E + E++ +E+EEEEE+ ++EEEEEE+ E +E+E EEEE+ E+ + EE++
Sbjct: 735 INEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKE 794
Query: 402 ENE 404
E
Sbjct: 795 EKL 797
Score = 40.3 bits (94), Expect = 0.003
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EE + E E EE EE +E+E+EE+ +EEEEE + +EE +
Sbjct: 920 IEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLM 979
Query: 405 GHCDFVKLRE 414
+F + E
Sbjct: 980 AIAEFEEKEE 989
Score = 39.6 bits (92), Expect = 0.006
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L E+EE+ +EE++EE + EE EE E ++ + EE+EE E++ + +++ E K+
Sbjct: 412 LELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKS 471
Query: 402 ENE 404
E+
Sbjct: 472 EDL 474
Score = 39.6 bits (92), Expect = 0.006
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 342 NGLEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EEE+ E+ +E+ E+ EEE E E + +EEE E + EEE+E + E
Sbjct: 355 EEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLEL 414
Query: 395 EEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
E+E++L E + +K+ E L + + T + + +L +
Sbjct: 415 SEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLK 463
Score = 37.6 bits (87), Expect = 0.024
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-EE 397
L +EE E EE+EE ++E ++E EEE++E E EE + +E
Sbjct: 963 NKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKE 1022
Query: 398 EKELENEGHCDFVKLREML 416
EL + K+ L
Sbjct: 1023 FLELFVSINRGLNKVFFYL 1041
Score = 36.5 bits (84), Expect = 0.049
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E +++E+ +EE ++ + E+EE ++ +E +++ EE + E++ +E+EEEEE
Sbjct: 695 ILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEE 754
Query: 399 KELENEGHCDFVKLREMLIRTNMEDMREKTHCRH--YELYRKKRLEEES 445
K + + K L + + EKT E K + +EE
Sbjct: 755 KSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEE 803
Score = 29.2 bits (65), Expect = 9.2
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEEEEEE 390
E+EE ++E ++E EEE++E E EE + +E +
Sbjct: 981 IAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLELFVSINRGLNKVFFY 1040
Query: 391 EEEEEEEEKELENEGH 406
E E LE+
Sbjct: 1041 LELGGSAELRLEDSDD 1056
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 50.6 bits (121), Expect = 2e-06
Identities = 17/61 (27%), Positives = 42/61 (68%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+E ++ ++ ++ E ++E + EE E + +EE+ ++EE E++++E+ +E++EK ++
Sbjct: 371 LKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKD 430
Query: 404 E 404
E
Sbjct: 431 E 431
Score = 49.8 bits (119), Expect = 2e-06
Identities = 17/61 (27%), Positives = 42/61 (68%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+Y L++ ++ E ++E + EE E + +EE+ ++EE E++++E+ +E++E+ +++E
Sbjct: 373 EYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Query: 399 K 399
K
Sbjct: 433 K 433
Score = 49.0 bits (117), Expect = 5e-06
Identities = 14/60 (23%), Positives = 40/60 (66%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++ ++ ++ E ++E + EE E + +EE+ ++EE E++++E+ +E++E+ ++ E +
Sbjct: 375 NKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 47.9 bits (114), Expect = 1e-05
Identities = 16/67 (23%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 342 NGLEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+G + +E ++ ++ ++ E ++E + EE E + +EE+ ++EE E++++E+ +E
Sbjct: 363 SGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADE 422
Query: 398 EKELENE 404
+KE +
Sbjct: 423 DKEKRQK 429
Score = 47.5 bits (113), Expect = 2e-05
Identities = 16/61 (26%), Positives = 38/61 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L ++ +E +E ++ ++ ++ E ++E + EE E + +EE+ ++EE E+++KE +
Sbjct: 362 LSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQAD 421
Query: 404 E 404
E
Sbjct: 422 E 422
Score = 46.3 bits (110), Expect = 3e-05
Identities = 15/55 (27%), Positives = 39/55 (70%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ ++ E ++E + EE E + +EE+ ++EE E++++E+ +E++E+ +++E +K
Sbjct: 380 DYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 40.2 bits (94), Expect = 0.003
Identities = 15/65 (23%), Positives = 34/65 (52%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE + + ++ +E +E ++ ++ ++ E ++E + EE E + +EE+ K
Sbjct: 349 LTKLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLK 408
Query: 400 ELENE 404
+ ENE
Sbjct: 409 QEENE 413
Score = 32.5 bits (74), Expect = 0.74
Identities = 11/54 (20%), Positives = 27/54 (50%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE + + ++ +E +E ++ ++ ++ E ++E + EE E K E +
Sbjct: 354 EEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKL 407
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 50.7 bits (121), Expect = 2e-06
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ E E+EE+ ++++ E E+EE+ E E E +E +E E + E E EEE + + +
Sbjct: 205 DDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQD 264
Query: 405 GHCD 408
D
Sbjct: 265 DLPD 268
Score = 49.9 bits (119), Expect = 3e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L EE ++ E E+EE+ ++++ E E+EE+ E E E +E +E E + E E E E
Sbjct: 199 LAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257
Score = 49.6 bits (118), Expect = 4e-06
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+EE+ ++++ E E+EE+ E E E +E +E E + E E EEE + ++ +L +E
Sbjct: 210 EDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDE 269
Query: 405 GHCD 408
D
Sbjct: 270 SDDD 273
Score = 49.2 bits (117), Expect = 6e-06
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E EE ++ E E+EE+ ++++ E E+EE+ E E E +E +E E + E + E
Sbjct: 197 MELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEE 256
Query: 404 EG 405
E
Sbjct: 257 EM 258
Score = 46.5 bits (110), Expect = 4e-05
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E+EE+ E E E +E +E E + E E EEE + ++++ +E +++ E EG
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGEG 280
Score = 45.3 bits (107), Expect = 9e-05
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++++ E E+EE+ E E E +E +E E + E E EEE + ++++ +E + ++E
Sbjct: 216 DDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSE 275
Score = 44.9 bits (106), Expect = 1e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+EE+ E E E +E +E E + E E EEE + ++++ +E +++ E E
Sbjct: 224 EQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGE 279
Score = 44.9 bits (106), Expect = 1e-04
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E+EE+ E E E +E +E E + E E EEE + ++++ +E +++ E
Sbjct: 223 NEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSET 276
Score = 44.5 bits (105), Expect = 2e-04
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E+EE+ E E E +E +E E + E E EEE + ++++ +E +++ +
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSET 276
Score = 42.6 bits (100), Expect = 6e-04
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+ E E E +E +E E + E E EEE + ++++ +E +++ E E
Sbjct: 226 EEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGEGARPAR 285
Query: 405 GHCDF 409
Sbjct: 286 PFTST 290
Score = 39.9 bits (93), Expect = 0.004
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
G E E +E +E E + E E EEE + ++++ +E +++ E E
Sbjct: 228 QGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGE 279
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 49.8 bits (119), Expect = 2e-06
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E E E ++ + E++E E E+ EEEE EE EE+EEEE EEE +E E
Sbjct: 45 IELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFE 103
Score = 48.3 bits (115), Expect = 5e-06
Identities = 31/75 (41%), Positives = 37/75 (49%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
Y N E++E E E+ EEEE EE EE+EEEE EEE EE E + EE E
Sbjct: 57 YGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEAS 116
Query: 400 ELENEGHCDFVKLRE 414
E E F + E
Sbjct: 117 EQLEEHEEGFQAMVE 131
Score = 48.3 bits (115), Expect = 6e-06
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E ++ + E++E E E+ EEEE EE EE+EEEE EEE EE E
Sbjct: 47 LAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
Score = 48.3 bits (115), Expect = 7e-06
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E E ++ + E++E E E+ EEEE EE EE+EEEE EEE EE + L
Sbjct: 49 EPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPL 105
Score = 45.2 bits (107), Expect = 6e-05
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E ++ + E++E E E+ EEEE EE EE+EEEE EE+ E E
Sbjct: 46 ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFE 103
Score = 41.7 bits (98), Expect = 7e-04
Identities = 28/62 (45%), Positives = 35/62 (56%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ EEEE EE EE+EEEE EEE EE E + EE E E+ EE EE + E+ +
Sbjct: 75 ISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEEGFQAMVEQAV 134
Query: 402 EN 403
E
Sbjct: 135 ER 136
Score = 39.4 bits (92), Expect = 0.003
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E E ++ + E++E E E+ EEEE EE EE+EE+E E E
Sbjct: 46 ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEES 99
Score = 39.4 bits (92), Expect = 0.004
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
E E E ++ + E++E E E+ EEEE EE EE+E+E E +F L
Sbjct: 46 ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPL 105
Query: 413 RE 414
+
Sbjct: 106 GD 107
Score = 36.7 bits (85), Expect = 0.031
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EE EE+EEEE EEE EE E + EE E E+ EE EE + E+ E+ L E
Sbjct: 82 EEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEEGFQAMVEQAVERGLSAE 141
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 49.3 bits (118), Expect = 2e-06
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEEEEEE 394
E+ + ++ + + + +++ ++++ E+E +E EE+E EEEE+
Sbjct: 111 EEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKA 170
Query: 395 EEEEKELENE 404
EEEK E E
Sbjct: 171 AEEEKAREEE 180
Score = 47.8 bits (114), Expect = 6e-06
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ + +++ ++++ E+E E E+ ++E EE+E EEEE+ EEE+ E+E+
Sbjct: 125 SSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEI 181
Score = 45.1 bits (107), Expect = 5e-05
Identities = 13/62 (20%), Positives = 34/62 (54%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ ++ + + + +++ ++++ E+E E E+ ++E EE+E EEEE+ +E
Sbjct: 115 RNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEE 174
Query: 402 EN 403
+
Sbjct: 175 KA 176
Score = 41.6 bits (98), Expect = 6e-04
Identities = 11/62 (17%), Positives = 35/62 (56%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ +E+++EE+E + + EE+ + ++ + + + +++ ++++ E+E +EL
Sbjct: 92 SNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLREL 151
Query: 402 EN 403
E
Sbjct: 152 EK 153
Score = 39.7 bits (93), Expect = 0.003
Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE- 395
+ N +E+++EE+E + + EE+ + ++ + + + +++ ++++ E+E
Sbjct: 88 NLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAAL 147
Query: 396 -----------EEEKELENE 404
EEKE E E
Sbjct: 148 LRELEKIKKERAEEKEREEE 167
Score = 31.6 bits (72), Expect = 1.1
Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 27/85 (31%)
Query: 344 LEEEEEE---------------------------EEEEEEEEEEEEEEEEEEEEEEEEEE 376
LEE E E+++EE+E + + EE+ + ++
Sbjct: 63 LEEAERAHKSKKENKLAIEDADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDS 122
Query: 377 EEEEEEEEEEEEEEEEEEEEEEKEL 401
+ + + +++ ++++ E+E L
Sbjct: 123 DSSSDSDSSDDDSDDDDSEDETAAL 147
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 47.3 bits (113), Expect = 3e-06
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
+ +G EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 100 HISGQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 46.5 bits (111), Expect = 4e-06
Identities = 18/36 (50%), Positives = 30/36 (83%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE+E +++EE+EEEE++EE+++E+E EEEE K+
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 9e-06
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EE+E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 41.5 bits (98), Expect = 2e-04
Identities = 15/32 (46%), Positives = 28/32 (87%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE+E +++EE+EEEE++EE+++E+E +E E+
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 41.2 bits (97), Expect = 3e-04
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+E +++EE+EEEE++EE+++E++ E E
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 36.9 bits (86), Expect = 0.010
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 376 EEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE+E +++EE+EEEE++EE+++++ E
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEE 138
Score = 31.5 bits (72), Expect = 0.56
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 379 EEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
EE+E +++EE+EEEE++EE + E+E +
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEE 138
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 48.1 bits (114), Expect = 3e-06
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E EE EE E E EE+ +E E++EE+E E EE+ EE+ ++ E E E++E E E++
Sbjct: 133 QEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESD 191
Score = 47.8 bits (113), Expect = 3e-06
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE EE E E EE+ +E E++EE+E E EE+ EE+ ++ E E E++E E E +++
Sbjct: 134 EREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDD 193
Score = 47.0 bits (111), Expect = 7e-06
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
+E EE EE E E EE+ +E E++EE+E E EE+ EE+ ++ E E E+ E E E
Sbjct: 133 QEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDD 192
Query: 408 D 408
D
Sbjct: 193 D 193
Score = 46.6 bits (110), Expect = 9e-06
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ +E+ E+ +E EE EE E E EE+ +E E++EE+E E EE+ EE+ ++ E E+
Sbjct: 123 IRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEI 180
Score = 46.6 bits (110), Expect = 9e-06
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LEE E E EE+ +E E++EE+E E EE+ EE+ ++ E E E++E E E ++ + E
Sbjct: 138 LEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTE 196
Score = 45.8 bits (108), Expect = 1e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+ E+ +E EE EE E E EE+ +E E++EE+E E EE+ EE+ ++ E + +E +
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184
Score = 45.8 bits (108), Expect = 2e-05
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E E EE+ +E E++EE+E E EE+ EE+ ++ E E E++E E E ++++ EK
Sbjct: 142 MEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 45.1 bits (106), Expect = 3e-05
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
D K L +E+ E+ +E EE EE E E EE+ +E E++EE+E E EE+ EE+
Sbjct: 114 DIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQS 173
Query: 397 EEKELE 402
++ E E
Sbjct: 174 DDSEHE 179
Score = 44.7 bits (105), Expect = 4e-05
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E E EE+ +E E++EE+E E EE+ EE+ ++ E E E++E E E + + E
Sbjct: 137 ELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTE 196
Score = 42.4 bits (99), Expect = 2e-04
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E EE+ +E E++EE+E E EE+ EE+ ++ E E E++E E E ++++ ++
Sbjct: 143 EWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 41.6 bits (97), Expect = 4e-04
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+E+ E+ +E EE EE E E EE+ +E E++EE+E E EE+ E++ ++ H
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEH 178
Score = 39.7 bits (92), Expect = 0.002
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLR 413
+E+ E+ +E EE EE E E EE+ +E E++EE+E E EE+ +E ++ + ++
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184
Query: 414 E 414
E
Sbjct: 185 E 185
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 45.8 bits (109), Expect = 3e-06
Identities = 7/54 (12%), Positives = 42/54 (77%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E+ +++E+EE+E++ +++++++++++ + ++++ + ++++++ E++++E
Sbjct: 51 EDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDDE 104
Score = 44.6 bits (106), Expect = 7e-06
Identities = 7/56 (12%), Positives = 42/56 (75%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E+ +++E+EE+E++ +++++++++++ + ++++ + ++++++ E+++ E
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDDE 104
Score = 41.5 bits (98), Expect = 1e-04
Identities = 6/57 (10%), Positives = 41/57 (71%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+ +++E+EE+E++ +++++++++++ + ++++ + ++++++ E +++
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDD 103
Score = 41.1 bits (97), Expect = 1e-04
Identities = 9/58 (15%), Positives = 37/58 (63%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE E + + E+ +++E+EE+E++ +++++++++++ + ++++ +L+
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLD 91
Score = 40.0 bits (94), Expect = 4e-04
Identities = 7/57 (12%), Positives = 37/57 (64%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
+ E+ +++E+EE+E++ +++++++++++ + ++++ + +++ + E D
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDD 103
Score = 36.5 bits (85), Expect = 0.006
Identities = 9/53 (16%), Positives = 34/53 (64%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E + + E+ +++E+EE+E++ +++++++++++ +L+++
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDD 86
Score = 36.1 bits (84), Expect = 0.007
Identities = 8/54 (14%), Positives = 33/54 (61%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE E + + E+ +++E+EE+E++ +++++++++++ + + ++
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDD 87
Score = 35.7 bits (83), Expect = 0.011
Identities = 8/54 (14%), Positives = 32/54 (59%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E + + E+ +++E+EE+E++ +++++++++++ +++
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDD 87
Score = 33.8 bits (78), Expect = 0.047
Identities = 11/57 (19%), Positives = 31/57 (54%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
EE E + + E+ +++E+EE+E++ ++++++++ + + D V L
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDL 90
Score = 30.4 bits (69), Expect = 0.76
Identities = 2/40 (5%), Positives = 29/40 (72%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+++++++++++ + ++++ + ++++++ E++++E
Sbjct: 65 DVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDDE 104
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 50.0 bits (119), Expect = 3e-06
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 343 GLEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
G +E EE + EE E++ E + E E++E+ EE EEE+ EEE +
Sbjct: 277 GDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSK 336
Query: 397 EEKEL 401
+ K+L
Sbjct: 337 KGKKL 341
Score = 49.6 bits (118), Expect = 4e-06
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E EE+ + + EE E++ E + E E++E+ EE EEE+ EEE L +
Sbjct: 278 DDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKK 337
Query: 405 G 405
G
Sbjct: 338 G 338
Score = 46.1 bits (109), Expect = 4e-05
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ ++ ++E EE+ + + EE E++ E + E E++E+ EE EE++ E EG
Sbjct: 273 DSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEG 332
Score = 45.0 bits (106), Expect = 1e-04
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ ++ ++E EE+ + + EE E++ E + E E++E+ EE EEEK E
Sbjct: 273 DSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEG 332
Query: 405 G 405
G
Sbjct: 333 G 333
Score = 44.2 bits (104), Expect = 2e-04
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ ++E EE+ + + EE E++ E + E E++E+ EE EEE+ +E
Sbjct: 275 DDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGL 334
Query: 405 G 405
Sbjct: 335 S 335
Score = 42.6 bits (100), Expect = 6e-04
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
N EE E++ E + E E++E+ EE EEE+ EEE ++ ++
Sbjct: 295 NDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 41.1 bits (96), Expect = 0.002
Identities = 17/75 (22%), Positives = 35/75 (46%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
KN D K +++ +E + ++ ++E EE+ + + EE E++ E
Sbjct: 250 KNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIP 309
Query: 390 EEEEEEEEEKELENE 404
+ E E++E E+E
Sbjct: 310 AKPEIEQDEDSEESE 324
Score = 36.5 bits (84), Expect = 0.047
Identities = 10/58 (17%), Positives = 28/58 (48%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+++ +E + ++ ++E EE+ + + EE E++ E + E ++ E+
Sbjct: 264 GGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSE 321
Score = 30.3 bits (68), Expect = 3.6
Identities = 14/70 (20%), Positives = 36/70 (51%)
Query: 331 NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
N + K +E+EE E E+ ++ + ++ E ++E++ +E ++ E+
Sbjct: 176 NGFQLMMMKAAKNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGED 235
Query: 391 EEEEEEEEKE 400
+EE+ ++K+
Sbjct: 236 GDEEKSKKKK 245
Score = 30.3 bits (68), Expect = 3.8
Identities = 7/59 (11%), Positives = 30/59 (50%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+++ +++++ + +++ +E + ++ ++E EE+ + + EE E++
Sbjct: 248 LAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSP 306
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 46.5 bits (111), Expect = 3e-06
Identities = 13/57 (22%), Positives = 40/57 (70%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ ++EE EE+ ++++++ + +++ +++ +++ +EE+ +EE++E+EE+EE
Sbjct: 73 VDEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 45.8 bits (109), Expect = 6e-06
Identities = 13/53 (24%), Positives = 38/53 (71%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+EE EE+ ++++++ + +++ +++ +++ +EE+ +EE++E+EE+EE
Sbjct: 77 DEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 43.8 bits (104), Expect = 2e-05
Identities = 13/57 (22%), Positives = 41/57 (71%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++E +EE EE+ ++++++ + +++ +++ +++ +EE+ +EE++E+EE++E
Sbjct: 73 VDEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 41.5 bits (98), Expect = 2e-04
Identities = 11/57 (19%), Positives = 36/57 (63%)
Query: 333 YSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
D + E+ ++++++ + +++ +++ +++ +EE+ +EE++E+EE+EE
Sbjct: 73 VDEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 40.4 bits (95), Expect = 5e-04
Identities = 12/56 (21%), Positives = 37/56 (66%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E +EE EE+ ++++++ + +++ +++ +++ +EE+ +EE++E E + E
Sbjct: 74 DEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 39.2 bits (92), Expect = 0.001
Identities = 12/56 (21%), Positives = 38/56 (67%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E +EE EE+ ++++++ + +++ +++ +++ +EE+ +EE++E++E E
Sbjct: 74 DEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 38.1 bits (89), Expect = 0.002
Identities = 11/54 (20%), Positives = 32/54 (59%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
ID+ + + + + +++ +++ +++ +EE+ +EE++E+EE+EE
Sbjct: 76 IDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell cycle
progression and biogenesis of 60S ribosomal subunits.
The Schistosoma mansoni Mak16 has been shown to target
protein transport to the nucleolus.
Length = 97
Score = 45.6 bits (108), Expect = 3e-06
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 333 YSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
Y+ + LE EE EE +EEEEEEEEEE+E E E ++EE EEE E+ E
Sbjct: 44 YNISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 45.6 bits (108), Expect = 4e-06
Identities = 26/56 (46%), Positives = 32/56 (57%)
Query: 331 NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+ F E EE EE +EEEEEEEEEE+E E E ++EE EEE E+ E
Sbjct: 41 DEPYNISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 44.1 bits (104), Expect = 1e-05
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++ E EE EE +EEEEEEEEEE+E E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLED 97
Score = 44.1 bits (104), Expect = 1e-05
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ +N + ++ E EE EE +EEEEEEEEEE+E E E ++EE EEE E+ E
Sbjct: 42 EPYNISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 43.3 bits (102), Expect = 2e-05
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
++ E EE EE +EEEEEEEEEE+E E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 43.3 bits (102), Expect = 2e-05
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
++ E EE EE +EEEEEEEEEE+E E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 43.3 bits (102), Expect = 2e-05
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
++ E EE EE +EEEEEEEEEE+E E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 43.3 bits (102), Expect = 2e-05
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
++ E EE EE +EEEEEEEEEE+E E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 42.9 bits (101), Expect = 3e-05
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ E EE EE +EEEEEEEEEE+E E E ++EE EEE ++LE
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 42.2 bits (99), Expect = 5e-05
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++ E EE EE +EEEEEEEEEE+E E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 40.6 bits (95), Expect = 2e-04
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ E EE EE +EEEEEEEEEE+E E E ++EE EE+ + E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 34.8 bits (80), Expect = 0.017
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
++ E EE EE +EEEEEEEEEE+E E E +++ELE E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIE 93
Score = 32.2 bits (73), Expect = 0.15
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREM 415
++ E EE EE +EEEEEEEEEE+E E E ++ ++ ++
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDL 95
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 50.1 bits (120), Expect = 3e-06
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E EE E E EE EE EE +E+ E +EE EE E EE E+ E EE ++ELE
Sbjct: 306 LLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEE 365
Query: 404 EGHCDFVKLREML--IRTNMEDMREK 427
+ +L E+ +R + ++ +
Sbjct: 366 KLSALLEELEELFEALREELAELEAE 391
Score = 48.9 bits (117), Expect = 7e-06
Identities = 26/59 (44%), Positives = 30/59 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E EE E+ E EE +EE EE+ EE EE E EE E E E E+ NE
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398
Score = 48.2 bits (115), Expect = 1e-05
Identities = 26/65 (40%), Positives = 32/65 (49%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E EE EE EE +E+ E +EE EE E EE E+ E EE +EE EE+
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE 372
Query: 402 ENEGH 406
E E
Sbjct: 373 ELEEL 377
Score = 47.0 bits (112), Expect = 3e-05
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 5/104 (4%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEE EE EE+ +E EEE EE E+E EE +EE EE E E+EE E+E +E EEE++ELE E
Sbjct: 834 EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893
Query: 406 HCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVIG 449
++ ++ +E +RE+ + +RLE E +
Sbjct: 894 --RELESELAELKEEIEKLRER---LEELEAKLERLEVELPELE 932
Score = 47.0 bits (112), Expect = 3e-05
Identities = 25/60 (41%), Positives = 28/60 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E EE E+ E EE +EE EE+ EE EE E EE E E E E ELE
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401
Score = 46.6 bits (111), Expect = 4e-05
Identities = 33/88 (37%), Positives = 46/88 (52%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LEE EEE EE +E EE EEE E EE + +EE EE EE+ + +EE EE EE+
Sbjct: 744 EELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELE 803
Query: 402 ENEGHCDFVKLREMLIRTNMEDMREKTH 429
E E D ++ + E + ++
Sbjct: 804 EAERRLDALERELESLEQRRERLEQEIE 831
Score = 46.2 bits (110), Expect = 5e-05
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE +EE EE E E+EE E+E +E EEE+EE EEE E E E E +EE E+ E+ E
Sbjct: 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRK-KRLEEESNVIG 449
E + +++ + +E+ E T EL R+ +RLEEE +G
Sbjct: 918 EAKLERLEVELPELEEELEEEYEDT--LETELEREIERLEEEIEALG 962
Score = 46.2 bits (110), Expect = 6e-05
Identities = 25/59 (42%), Positives = 31/59 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE+ E EE +EE EE+ EE EE E EE E E E E E EE ++E+E
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIE 407
Score = 45.9 bits (109), Expect = 7e-05
Identities = 24/59 (40%), Positives = 27/59 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E EE E+ E EE +EE EE+ EE EE E EE E E E E E
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398
Score = 45.9 bits (109), Expect = 7e-05
Identities = 26/62 (41%), Positives = 31/62 (50%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L EE E+ E EE +EE EE+ EE EE E EE E E E E E +EL+
Sbjct: 344 TLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK 403
Query: 403 NE 404
E
Sbjct: 404 RE 405
Score = 45.5 bits (108), Expect = 9e-05
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE E+ + EE EEE EE EEE EE +E EE EEE E EE + +EE +ELE +
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787
Query: 405 GHCDFVKLR--EMLIRTNMEDMREKTHCRHYELYRKKRLEEESN 446
+L E + + R++RLE+E
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831
Score = 45.5 bits (108), Expect = 1e-04
Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ E E+E EE EEE EE EE+ +E EEE EE E+E EE +EE EE E E++ELE+E
Sbjct: 819 LEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDE 878
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESN 446
+L E E++RE ++L E
Sbjct: 879 ----LKELEEEKEELE-EELRELESELAELKEEIEKLRERLE 915
Score = 45.1 bits (107), Expect = 1e-04
Identities = 31/72 (43%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEEEEE 392
+ LEE +E+ E +EE EE E EE E+ E EE +EE EE EE EE E
Sbjct: 320 ELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFE 379
Query: 393 EEEEEEKELENE 404
EE ELE E
Sbjct: 380 ALREELAELEAE 391
Score = 44.7 bits (106), Expect = 2e-04
Identities = 26/57 (45%), Positives = 30/57 (52%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E E EE E E EE EE EE +E+ E +EE EE E EE E+ ELE
Sbjct: 301 EGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELE 357
Score = 44.3 bits (105), Expect = 2e-04
Identities = 26/84 (30%), Positives = 39/84 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE E+ E EE +EE EE+ EE EE E EE E E E E + E
Sbjct: 343 ETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEEL 402
Query: 404 EGHCDFVKLREMLIRTNMEDMREK 427
+ + ++ R + +ED++E+
Sbjct: 403 KREIESLEERLERLSERLEDLKEE 426
Score = 44.3 bits (105), Expect = 2e-04
Identities = 23/66 (34%), Positives = 27/66 (40%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+EE EE+ EE EE E EE E E E E E EE + E E EE
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERL 413
Query: 399 KELENE 404
+ L
Sbjct: 414 ERLSER 419
Score = 42.8 bits (101), Expect = 6e-04
Identities = 24/58 (41%), Positives = 28/58 (48%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E EE E E EE EE EE +E+ E +EE EE E EE E+ E
Sbjct: 301 EGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358
Score = 42.4 bits (100), Expect = 8e-04
Identities = 27/65 (41%), Positives = 33/65 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE E E E EE E E EE EE EE +E+ E +EE EE E EE E+ E
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356
Query: 404 EGHCD 408
E +
Sbjct: 357 EEAKE 361
Score = 41.2 bits (97), Expect = 0.002
Identities = 27/65 (41%), Positives = 35/65 (53%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ L EE + EE E + EE + E EEE E+ + EE EEE EE EEE EE +
Sbjct: 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQ 757
Query: 399 KELEN 403
+ LE
Sbjct: 758 ERLEE 762
Score = 41.2 bits (97), Expect = 0.002
Identities = 27/59 (45%), Positives = 32/59 (54%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EE EE E E E EE E E EE EE EE +E+ E +EE EE E +ELE
Sbjct: 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352
Score = 40.9 bits (96), Expect = 0.002
Identities = 32/59 (54%), Positives = 38/59 (64%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE EEE EE +EE EE E+E EE + E EE EE EE +EE E +EE +ELE E
Sbjct: 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGE 303
Score = 40.5 bits (95), Expect = 0.003
Identities = 27/61 (44%), Positives = 32/61 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E EE E E E EE E E EE EE EE +E+ E +EE EE E EE ++L
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354
Query: 404 E 404
E
Sbjct: 355 E 355
Score = 40.5 bits (95), Expect = 0.003
Identities = 25/62 (40%), Positives = 29/62 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE EE E EE E E E E E EE + E E EE E E E+ +E+ E
Sbjct: 371 LEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKEL 430
Query: 404 EG 405
E
Sbjct: 431 EA 432
Score = 40.5 bits (95), Expect = 0.003
Identities = 24/59 (40%), Positives = 29/59 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L EE EE E EE E E E E E EE + E E EE E E E+ ++EL+
Sbjct: 370 LLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428
Score = 39.7 bits (93), Expect = 0.006
Identities = 26/60 (43%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E EE E E E E E EE + E E EE E E E+ +EE KELE E
Sbjct: 374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAE 433
Score = 39.7 bits (93), Expect = 0.006
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ EE + EE E + EE + E EEE E+ + EE EEE EE EEE +EL+
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQER 759
Score = 39.7 bits (93), Expect = 0.006
Identities = 26/64 (40%), Positives = 32/64 (50%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L+EE EE E E E EE E E EE EE EE +E+ E +EE EE E E+
Sbjct: 290 LLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL 349
Query: 401 LENE 404
+
Sbjct: 350 EQLL 353
Score = 39.3 bits (92), Expect = 0.008
Identities = 31/59 (52%), Positives = 37/59 (62%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E EE EEE EEE EE +EE EE E+E EE + E EE EE EE +EE EL+ E
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE 296
Score = 39.3 bits (92), Expect = 0.008
Identities = 30/82 (36%), Positives = 40/82 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE E + EE + E EEE E+ + EE EEE EE EEE EE +E EE E E E
Sbjct: 709 RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELE 768
Query: 405 GHCDFVKLREMLIRTNMEDMRE 426
+ + + I E +
Sbjct: 769 SLEEALAKLKEEIEELEEKRQA 790
Score = 38.9 bits (91), Expect = 0.008
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE EE+ + +EE EE EEE EE E + E E E E+ E E+E EE EE+ E
Sbjct: 781 IEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEEL 840
Query: 404 EGHCDFVKLR 413
E D ++
Sbjct: 841 EEKLDELEEE 850
Score = 38.9 bits (91), Expect = 0.008
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE + + E E+ EE + EE E + EE + E EEE E+ + +ELE E
Sbjct: 687 EEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE 745
Score = 38.9 bits (91), Expect = 0.009
Identities = 33/72 (45%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 341 FNGLEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
LEEE+EE EEE E +EE E+ E EE E + E E E E EEE EEE
Sbjct: 879 LKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE 938
Query: 393 EEEEEEKELENE 404
E+ E ELE E
Sbjct: 939 YEDTLETELERE 950
Score = 38.9 bits (91), Expect = 0.009
Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEEEEEEEEEEEEEE 394
LEE E+E EE + E EE EE EE +EE E E E E EE E E EE
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321
Query: 395 EEEEKELENE 404
EE +EL+ +
Sbjct: 322 EERLEELKEK 331
Score = 38.9 bits (91), Expect = 0.009
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE +E EE EEE E EE + +EE EE EE+ + +EE EE EEE EE E+
Sbjct: 749 LEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERR 808
Query: 401 LEN-EGHCDFVKLREMLIRTNMEDMREK 427
L+ E + ++ R + +E++ E+
Sbjct: 809 LDALERELESLEQRRERLEQEIEELEEE 836
Score = 38.5 bits (90), Expect = 0.012
Identities = 29/56 (51%), Positives = 36/56 (64%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E +E EE EEE EEE EE +EE EE E+E EE + E EE EE EE ++EL
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290
Score = 38.2 bits (89), Expect = 0.015
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E E EE + E E EE E E E+ +EE +E E E EE + E EE E+ E
Sbjct: 392 LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEEL 451
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVIGSNFRWSD 456
E + ++ R + + +++E+ EL LE + + + R S
Sbjct: 452 EEQLEELRDRLKELERELAELQEELQRLEKEL---SSLEARLDRLEAEQRASQ 501
Score = 38.2 bits (89), Expect = 0.015
Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 344 LEEEEEEEEEEEEEEEEE-----------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
L+ E EE EE EE +EE E E E EE E E EE EE EE +E+
Sbjct: 272 LKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEK 331
Query: 393 EEEEEEKELENEG 405
E +E+ E E
Sbjct: 332 IEALKEELEERET 344
Score = 38.2 bits (89), Expect = 0.015
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L+E +E EE EEE EEE EE +EE EE E+E EE + E EE EE EE +E+ LE
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292
Score = 38.2 bits (89), Expect = 0.015
Identities = 22/65 (33%), Positives = 29/65 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E EE E E E E E EE + E E EE E E E+ +EE +E E + E
Sbjct: 378 FEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEEL 437
Query: 404 EGHCD 408
+ +
Sbjct: 438 QTELE 442
Score = 38.2 bits (89), Expect = 0.018
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N LEE + E E EE E E E+ +EE +E E E EE + E EE EE EE EE+
Sbjct: 397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE 456
Query: 402 ENEGHCDFVKLREMLIRTNMEDMREK 427
E ++ ++ ++ + ++
Sbjct: 457 ELRDRLKELERELAELQEELQRLEKE 482
Score = 37.8 bits (88), Expect = 0.019
Identities = 22/61 (36%), Positives = 26/61 (42%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EE E EE E E E E E EE + E E EE E E E+ + E +
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428
Query: 405 G 405
Sbjct: 429 E 429
Score = 37.8 bits (88), Expect = 0.022
Identities = 29/73 (39%), Positives = 38/73 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ EE E + EE + E EEE E+ + EE EEE EE EEE EE +E EE +E
Sbjct: 709 RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELE 768
Query: 404 EGHCDFVKLREML 416
KL+E +
Sbjct: 769 SLEEALAKLKEEI 781
Score = 37.8 bits (88), Expect = 0.022
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------EEEEE 392
LE + E E E E EEE EEE E+ E E E E E EEE E EE E
Sbjct: 914 LEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYE 973
Query: 393 EEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVIGSNF 452
E EE +EL+++ D + +E L+ +E++ ++ +++R +E + I NF
Sbjct: 974 EVEERYEELKSQ-REDLEEAKEKLLEV-IEELDKE---------KRERFKETFDKINENF 1022
Query: 453 R 453
Sbjct: 1023 S 1023
Score = 37.8 bits (88), Expect = 0.023
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E + E+ EEE + + E E+ EE + EE E + EE + E EEE ++L++
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739
Query: 406 H 406
Sbjct: 740 E 740
Score = 37.4 bits (87), Expect = 0.030
Identities = 27/59 (45%), Positives = 31/59 (52%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE E+ E EE E + E E E E EEE EEE E+ E E E E E EEE + L
Sbjct: 905 EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGP 963
Score = 37.0 bits (86), Expect = 0.040
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ + E E+ EE + EE E + EE + E EEE E+ + EE EE+ E
Sbjct: 690 LKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEEL 749
Query: 404 EGHCDFVKLREMLIRTNMEDMREK 427
E + ++ R + +E + E
Sbjct: 750 EEELEELQERLEELEEELESLEEA 773
Score = 35.5 bits (82), Expect = 0.12
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE + +E +E EE EEE EEE EE +EE EE E+E EE + E EE +E
Sbjct: 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E + ++L+E + E + E ++ E
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERL 325
Score = 33.1 bits (76), Expect = 0.51
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E E + +E +E EE EEE EEE EE +EE EE E+E EE + E +EL
Sbjct: 222 LRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELRE 281
Query: 404 E 404
E
Sbjct: 282 E 282
Score = 33.1 bits (76), Expect = 0.55
Identities = 26/60 (43%), Positives = 29/60 (48%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+ E EE E + E E E E EEE EEE E+ E E E E E EEE E N
Sbjct: 908 EKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLR 967
Score = 32.4 bits (74), Expect = 0.93
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++ E +E EEE E E + E+ EEE + + E E+ EE + EE E + +EL+
Sbjct: 664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723
Query: 404 E 404
E
Sbjct: 724 E 724
Score = 30.5 bits (69), Expect = 4.1
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE + E+ E +E + E E E + +E +E EE EEE EEE EE ++ELE
Sbjct: 205 LERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEE 264
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ +++ +E++RE+ EL K EE
Sbjct: 265 A------EKEIEELKSELEELREELEELQEELLELKEEIEE 299
Score = 30.1 bits (68), Expect = 4.4
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
LEE+ EE + +E E E E +EE + E+E E + E E+ +
Sbjct: 448 LEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVL 507
Query: 401 LENE 404
E
Sbjct: 508 EALE 511
Score = 29.3 bits (66), Expect = 8.0
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE + +E +EE E + E EE E E+ EE E++ E+ E + E+ E +EL+
Sbjct: 161 IEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKA 220
Query: 404 E 404
E
Sbjct: 221 E 221
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 46.6 bits (111), Expect = 3e-06
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K + EEE ++EE+ E E+ E+ E++E E E + EEE +E++ +
Sbjct: 70 KERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTV 129
Query: 399 KELEN 403
+EL+
Sbjct: 130 EELDP 134
Score = 46.6 bits (111), Expect = 4e-06
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L+E +E + EEE ++EE+ E E+ E+ E++E E E + EEE +E++ K
Sbjct: 69 LKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYK 124
Score = 45.0 bits (107), Expect = 1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E E++ +E +E + EEE ++EE+ E E+ E+ E++E E E + EE+ ++ +
Sbjct: 62 KQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDED 121
Query: 405 GHCDFVKLREM 415
+ V + E+
Sbjct: 122 KYKTTVTVEEL 132
Score = 45.0 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ EE ++E E++ +E +E + EEE ++EE+ E E+ E+ E++E E E E
Sbjct: 57 IREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEE 116
Query: 404 EG 405
Sbjct: 117 YI 118
Score = 42.7 bits (101), Expect = 7e-05
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 344 LEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+E+E EE EE EE ++E E++ +E +E + EEE ++EE+ E E+ E+ E++E
Sbjct: 42 AKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDE 101
Query: 399 KELENE 404
E E
Sbjct: 102 WEGFPE 107
Score = 41.2 bits (97), Expect = 2e-04
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+EE + EE ++E E++ +E +E + EEE ++EE+ E E+ E+ E++E E E
Sbjct: 51 IEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPT 109
Score = 39.6 bits (93), Expect = 0.001
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E+E EE EE + EE ++E E++ +E +E + EEE ++EE+ E E+ E ++E
Sbjct: 43 KEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEW 102
Query: 406 H 406
Sbjct: 103 E 103
Score = 38.8 bits (91), Expect = 0.002
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 345 EEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+EE +E+E EE EE EE ++E E++ +E +E + EEE ++EE+ E E+ E+ +
Sbjct: 39 QEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVE 98
Query: 400 ELENEG 405
+ E EG
Sbjct: 99 DDEWEG 104
Score = 34.6 bits (80), Expect = 0.044
Identities = 20/60 (33%), Positives = 38/60 (63%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ +EE +E+E EE EE + EE ++E E++ +E +E + EEE ++EE+ + + E
Sbjct: 36 KKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTE 95
Score = 33.5 bits (77), Expect = 0.11
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ ++ +EE +E+E EE EE + EE ++E E++ +E +E + EEE ++E++ E
Sbjct: 32 QQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAET 91
Query: 404 EG 405
E
Sbjct: 92 ED 93
Score = 30.8 bits (70), Expect = 0.91
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
++ +EE +E+E EE EE + EE ++E E++ +E +E + EEE +++E +
Sbjct: 36 KKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTE 95
Query: 409 FV 410
V
Sbjct: 96 DV 97
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 47.4 bits (112), Expect = 3e-06
Identities = 33/98 (33%), Positives = 51/98 (52%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E EE + EE EEE +EEE E+EE+ + + EEEE++E+EE++ ++ +
Sbjct: 53 DRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQK 112
Query: 406 HCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
+ RE R +E + L RKKRLEE
Sbjct: 113 EEAEARAREEAERMRLEREKHFQQIEQERLERKKRLEE 150
Score = 45.9 bits (108), Expect = 1e-05
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+ E+EE+E E+EE++ E EE + EE EEE +EEE E+EE+ + + E
Sbjct: 37 EQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEE 96
Query: 406 HCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ +E + ++ +E+ R E + RLE E
Sbjct: 97 E----EKQEQEEQERIQKQKEEAEARAREEAERMRLERE 131
Score = 31.2 bits (70), Expect = 0.89
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EEEE++E+EE+E ++++EE E EE E E E+ ++ E+E E ++ +E+
Sbjct: 95 EEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKRLEEI 151
Score = 30.8 bits (69), Expect = 1.2
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ + E+ E+EE+E E+EE++ E EE + EE E E
Sbjct: 30 EKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEE 74
Score = 30.1 bits (67), Expect = 2.5
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EEE++E+EE+E ++++EE E EE E E E+ ++ E+E E ++ E+
Sbjct: 94 AEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKRLEE 150
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 50.0 bits (119), Expect = 3e-06
Identities = 23/64 (35%), Positives = 42/64 (65%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+G + + E+ ++EEEEEE+E E+E ++E+E + E E E+ ++E E++EEK++
Sbjct: 105 DGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKM 164
Query: 402 ENEG 405
E E
Sbjct: 165 EEEE 168
Score = 49.2 bits (117), Expect = 5e-06
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Query: 344 LEEEEEEEEEEEEEE-------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
++EEEEEE+E E+ E E E+ ++E E++EE++ EEEE EE+E
Sbjct: 115 ADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKE 174
Query: 391 EEEEEEEEKELENEGHCD-FVKLREM 415
E+ EK+ + G D F KL EM
Sbjct: 175 SVEQATREKKFDKSGVDDKFFKLDEM 200
Score = 45.0 bits (106), Expect = 1e-04
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L + ++ E E+ + + + E+ ++EEEEEE+E E+E ++E+E + E E LE+
Sbjct: 91 LAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLED 150
Query: 404 E 404
Sbjct: 151 L 151
Score = 43.4 bits (102), Expect = 3e-04
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
+ ++ E E+ + + + E+ ++EEEEEE+E E+E ++E+E + E E E
Sbjct: 93 KLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLS 152
Query: 408 DFVKLREMLIRTNMEDMREK 427
D + + E+ E+
Sbjct: 153 DDETEDDEEKKMEEEEAGEE 172
Score = 43.1 bits (101), Expect = 5e-04
Identities = 20/73 (27%), Positives = 41/73 (56%)
Query: 329 DKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
K+ + + +E ++E + + EEE+EE++E+E++++EEE E ++ + +E
Sbjct: 266 KKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEP 325
Query: 389 EEEEEEEEEEKEL 401
E + E KEL
Sbjct: 326 VLEGVDLESPKEL 338
Score = 42.3 bits (99), Expect = 7e-04
Identities = 19/61 (31%), Positives = 41/61 (67%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ E E++E ++E ++E + + EEE+EE++E+E++++EEE E ++ + +E LE
Sbjct: 271 DDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGV 330
Query: 405 G 405
Sbjct: 331 D 331
Score = 41.5 bits (97), Expect = 0.001
Identities = 20/87 (22%), Positives = 48/87 (55%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ ++E ++E + + EEE+EE++E+E++++EEE E ++ + +E E + E +
Sbjct: 277 DDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPK 336
Query: 401 LENEGHCDFVKLREMLIRTNMEDMREK 427
+ KL++ + + E++ K
Sbjct: 337 ELSSFEKRQAKLKQQIEQLEKENLAPK 363
Score = 41.1 bits (96), Expect = 0.002
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++ E +E + ++ E E+ + + + E+ ++EEEEEE+E E++ +++
Sbjct: 75 NQKYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDD 134
Query: 404 EGHCDFVKLRE 414
E D E
Sbjct: 135 EDEADLFNESE 145
Score = 39.6 bits (92), Expect = 0.005
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ L ++ E +E + ++ E E+ + + + E+ ++EEEEEE+E E E
Sbjct: 71 LDDLNQKYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDE 130
Query: 401 LEN 403
+ +
Sbjct: 131 MID 133
Score = 39.6 bits (92), Expect = 0.005
Identities = 20/66 (30%), Positives = 41/66 (62%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
D K G + E E++E ++E ++E + + EEE+EE++E+E++++EEE E ++ + +
Sbjct: 264 DKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLD 323
Query: 397 EEKELE 402
E
Sbjct: 324 EPVLEG 329
Score = 39.6 bits (92), Expect = 0.006
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
N E +E + ++ E E+ + + + E+ ++EEEEEE+E E+E
Sbjct: 73 DLNQKYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMI 132
Query: 400 ELENE 404
+ E+E
Sbjct: 133 DDEDE 137
Score = 38.8 bits (90), Expect = 0.008
Identities = 23/134 (17%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--- 391
FF N E E EEE +E++ E+ +++ E+ +++E+ E+EE++EE
Sbjct: 194 FFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIE 253
Query: 392 ------EEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445
+E++++K+ ++ + + + ++ + E+ E + EE
Sbjct: 254 YEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPP 313
Query: 446 NVIGSNFRWSDFSA 459
+ +
Sbjct: 314 EAAMDKVKLDEPVL 327
Score = 38.8 bits (90), Expect = 0.010
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------------- 386
L E E E+ ++E E++EE++ EEEE EE+E E+ E
Sbjct: 139 DLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKLD 198
Query: 387 --EEEEEEEEEEEEKELENE 404
E E E EEE L +E
Sbjct: 199 EMNEFLEATEAEEEAALGDE 218
Score = 37.3 bits (86), Expect = 0.027
Identities = 19/74 (25%), Positives = 47/74 (63%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
F +E++++++ ++ E E++E ++E ++E + + EEE+EE++E+E++++EEE E
Sbjct: 257 FFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAA 316
Query: 401 LENEGHCDFVKLRE 414
++ + V
Sbjct: 317 MDKVKLDEPVLEGV 330
Score = 34.2 bits (78), Expect = 0.22
Identities = 19/92 (20%), Positives = 38/92 (41%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
++ E +E + ++ E E+ + + + E+ ++EEEE+E E+
Sbjct: 76 QKYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDE 135
Query: 413 REMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E + E E E +K++EEE
Sbjct: 136 DEADLFNESESSLEDLSDDETEDDEEKKMEEE 167
Score = 30.3 bits (68), Expect = 3.9
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEE--------------EEEEEEEEEEEEEEEEEEE 386
+ E++ EEEE EE+E E+ E+ +E E E E EEE
Sbjct: 157 EDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALG 216
Query: 387 EEEEEEEEEEEEKE 400
+E++ E+ +++ E
Sbjct: 217 DEDDFEDYFQDDSE 230
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association with
mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 45.1 bits (107), Expect = 4e-06
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEKEL 401
L+ E E ++EEEEEEEEE++ E+ +E+E +E E E++ + E+EEEE+ +EL
Sbjct: 2 LDTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEEL 61
Query: 402 ENE 404
Sbjct: 62 AEY 64
Score = 42.4 bits (100), Expect = 3e-05
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EEEEEEEEE++ E+ +E+E +E E E++ + E+EEEE+ EE + L
Sbjct: 10 DEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEELAEYLRK 67
Score = 40.5 bits (95), Expect = 2e-04
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EEEEEEEE++ E+ +E+E +E E E++ + E+EEEE+ EE E ++
Sbjct: 12 EEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEELAEYLRK 67
Score = 37.8 bits (88), Expect = 0.002
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E E ++EEEEEEEEE++ E+ +E+E +E E E++ + +
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDR 48
Score = 37.0 bits (86), Expect = 0.003
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EEEEEE++ E+ +E+E +E E E++ + E+EEEE+ EE E ++
Sbjct: 14 EEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEELAEYLRKR 68
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 48.5 bits (116), Expect = 4e-06
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 15/72 (20%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEE---------------EEEEEEEEEEEEEEEEEEEE 389
E+E+++ ++ +EEE+EE+EEE+ + EE+E+ + E+EE+ E EE
Sbjct: 27 EDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86
Query: 390 EEEEEEEEEKEL 401
+ E+E EK
Sbjct: 87 DTPEDELAEKLR 98
Score = 47.7 bits (114), Expect = 5e-06
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 14/73 (19%)
Query: 345 EEEEEEEEEEEEEEE--------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+EEE+EE+EEE+ + EE+E+ + E+EE+ E EE+ E+E E+
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKL 97
Query: 391 EEEEEEEEKELEN 403
+ +EE +L N
Sbjct: 98 RLRKLQEESDLNN 110
Score = 45.4 bits (108), Expect = 3e-05
Identities = 27/96 (28%), Positives = 58/96 (60%), Gaps = 14/96 (14%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
++E+E+++ ++ +EEE+EE+EEE+ + + + ++ + + EE+E+ ++E E +G
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKG---- 80
Query: 410 VKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445
LRE+ T +++ EK R ++L+EES
Sbjct: 81 --LRELEEDTPEDELAEKL--------RLRKLQEES 106
Score = 38.1 bits (89), Expect = 0.009
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
L+ + EE+E+ + E+EE+ E EE+ E+E E+ + +EE
Sbjct: 62 LKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 47.3 bits (113), Expect = 5e-06
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ +EEEEE E +E E E++ +E +EE +EEE+++ LE
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLE 62
Score = 45.3 bits (108), Expect = 2e-05
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
L + +EEEEE E +E E E++ +E +EE +EEE++ EE
Sbjct: 13 LPPKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
Score = 44.6 bits (106), Expect = 4e-05
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
G+ + +EEEEE E +E E E++ +E +EE +EEE++ EE K L
Sbjct: 11 GILPPKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRL 69
Score = 38.4 bits (90), Expect = 0.005
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 29/97 (29%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREK 427
+ +EEEEE E +E E E++ EL+ E +++ +
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEE----------------LDEEEDD 58
Query: 428 THCRHYELYRKKRLEEESNVIGSNFRWSDFSAKTRFG 464
R E YR+KRL E + K++FG
Sbjct: 59 ---RFLEEYRRKRLAE----------MKALAEKSKFG 82
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 46.1 bits (108), Expect = 7e-06
Identities = 34/56 (60%), Positives = 37/56 (66%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
NG + ++E EEEEE E EEE EEE E EEE EEE E EE EEE E E E E E E
Sbjct: 56 NGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPE 111
Score = 45.7 bits (107), Expect = 8e-06
Identities = 37/60 (61%), Positives = 38/60 (63%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E EEEEE E EEE EEE E EEE EEE E EE EEE E E E E E E E E E E E
Sbjct: 62 DEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPE 121
Score = 43.8 bits (102), Expect = 4e-05
Identities = 35/61 (57%), Positives = 36/61 (59%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EEEEE E EEE EEE E EEE EEE E EE EEE E E E E E E E E +
Sbjct: 63 EPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPEP 122
Query: 405 G 405
G
Sbjct: 123 G 123
Score = 42.6 bits (99), Expect = 9e-05
Identities = 32/59 (54%), Positives = 37/59 (62%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ + ++E EEEEE E EEE EEE E EEE EEE E EE EEE E E E E E E
Sbjct: 53 DDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPE 111
Score = 40.7 bits (94), Expect = 4e-04
Identities = 30/55 (54%), Positives = 35/55 (63%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
G ++ + ++E EEEEE E EEE EEE E EEE EEE E EE EEE E E E
Sbjct: 51 GADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPE 105
Score = 39.6 bits (91), Expect = 0.001
Identities = 30/62 (48%), Positives = 37/62 (59%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G + + ++ + ++E EEEEE E EEE EEE E EEE EEE E EE EEE E E
Sbjct: 44 GEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPE 103
Query: 403 NE 404
E
Sbjct: 104 PE 105
Score = 38.8 bits (89), Expect = 0.002
Identities = 33/67 (49%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEEEEE 397
K G + ++ + ++E EEEEE E EEE EEE E EEE EEE E EE EEE E
Sbjct: 43 KGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEP 102
Query: 398 EKELENE 404
E E E E
Sbjct: 103 EPEPEPE 109
Score = 38.4 bits (88), Expect = 0.002
Identities = 30/51 (58%), Positives = 30/51 (58%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EEE EEE E EEE EEE E EE EEE E E E E E E E E E E E
Sbjct: 71 EPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPE 121
Score = 37.6 bits (86), Expect = 0.005
Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E+ + ++ + ++E EEEEE E EEE EEE E EEE EEE E EE E+E E
Sbjct: 42 GKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPE 101
Query: 403 NE 404
E
Sbjct: 102 PE 103
Score = 35.3 bits (80), Expect = 0.028
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G + E+ + ++ + ++E EEEEE E EEE EEE E EEE EEE E EE E E
Sbjct: 40 GKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEE 99
Query: 403 NE 404
E
Sbjct: 100 PE 101
Score = 33.4 bits (75), Expect = 0.15
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
G + + E+ + ++ + ++E EEEEE E EEE EEE E EEE EEE E EE
Sbjct: 39 GGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEE 94
Score = 32.6 bits (73), Expect = 0.28
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+ + ++ + ++E EEEEE E EEE EEE E EEE EEE E E G
Sbjct: 45 EKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETG 96
Score = 31.5 bits (70), Expect = 0.67
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
G+ + + + E+ + ++ + ++E EEEEE E EEE EEE E EEE EEE
Sbjct: 34 KGITKGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEE 89
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 48.5 bits (116), Expect = 8e-06
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-EEEEEEEEKELE 402
L + +EEE E+E EEEE E E+ ++ EE E EEE E + E EE ++E+E
Sbjct: 394 LSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIE 453
Query: 403 N-EGHCDFVKLR---EMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVI 448
E + + ++ + R L +K LEE+ +
Sbjct: 454 KLESELERFRREVRDKVRKDREIRARDR----RIERL--EKELEEKKKRV 497
Score = 40.1 bits (94), Expect = 0.004
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE + E E+ E E E E ++ ++ E + E E+E EE+++ +ELE
Sbjct: 446 EELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER--- 502
Query: 407 CDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
KL E+ +E + T + E + +EE
Sbjct: 503 ----KLAELRKMRKLELSGKGTPVKVVEKLTLEAIEE 535
Score = 33.9 bits (78), Expect = 0.30
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE E E E ++ ++ E + E E+E EE+++ EE E + E + ++LE
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLE 514
Query: 403 NEGHCDFVKLREMLIRTNMEDMREK 427
G VK+ E L +E+ E+
Sbjct: 515 LSGKGTPVKVVEKLTLEAIEEAEEE 539
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 47.5 bits (113), Expect = 1e-05
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD----FVK 411
++ E+EE E++ +E+EE+E EE+E E EEEE+EE E++ D FVK
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKASPDADTTILFVK 87
Score = 47.1 bits (112), Expect = 1e-05
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
G ++ E+EE E++ +E+EE+E EE+E E EEEE+EE E
Sbjct: 25 KGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 44.4 bits (105), Expect = 1e-04
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++ E+EE E++ +E+EE+E EE+E E EEEE+EE E K
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVK 74
Score = 44.0 bits (104), Expect = 1e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
F + ++ E+EE E++ +E+EE+E EE+E E EEEE+EE E
Sbjct: 21 FGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 43.6 bits (103), Expect = 1e-04
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
++ E+EE E++ +E+EE+E EE+E E EEEE+EE E
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 43.6 bits (103), Expect = 1e-04
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
++ E+EE E++ +E+EE+E EE+E E EEEE+EE E
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 43.6 bits (103), Expect = 1e-04
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
++ E+EE E++ +E+EE+E EE+E E EEEE+EE E
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 42.5 bits (100), Expect = 4e-04
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 331 NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
N F +EE E++ +E+EE+E EE+E E EEEE+EE E
Sbjct: 23 NGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 48.3 bits (116), Expect = 1e-05
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ EE+ E EE +++E+EEEEE+E ++ +E E EK LE
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLE 222
Score = 47.1 bits (113), Expect = 3e-05
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE+ E EE +++E+EEEEE+E ++ +E E E E
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLE 222
Score = 38.6 bits (91), Expect = 0.012
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC-DFVK--LREM 415
EE + ++ E E + + +E+ EEE G D V+ LREM
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEIGRTDDPVRMYLREM 113
Score = 37.9 bits (89), Expect = 0.019
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE +++E+EEEEE+E ++ +E E E+ E+ + ++ ++ K E +
Sbjct: 182 PAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKK 241
Query: 405 GHCDFV------KLREMLI 417
KLRE L
Sbjct: 242 VEGRLAQHKKYAKLREKLK 260
Score = 35.5 bits (83), Expect = 0.082
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+EE + ++ E E + + +E+ EEE E E
Sbjct: 60 VEEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 35.5 bits (83), Expect = 0.10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EE + ++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 44.9 bits (107), Expect = 1e-05
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+ + E+++EE++ E E+ + EE+ E E E+ E+E EE E E +EL+ E
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73
Score = 43.0 bits (102), Expect = 4e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ +E+ + E+++EE++ E E+ + EE+ E E E+ E+E EE E E E + E
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73
Score = 41.1 bits (97), Expect = 2e-04
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+ + E+++EE++ E E+ + EE+ E E E+ E+E EE E E E + E
Sbjct: 20 EKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEA 74
Score = 40.7 bits (96), Expect = 3e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ E+++EE++ E E+ + EE+ E E E+ E+E EE E E E + E +K L
Sbjct: 21 KAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKML 78
Score = 39.5 bits (93), Expect = 7e-04
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE+ ++E ++ +E+ + E+++EE++ E E+ + EE+ E E E+ EKELE
Sbjct: 2 PEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELE-- 59
Query: 405 GHCDFVKLREMLIRTNMEDMREKT 428
+L L R ++ +K
Sbjct: 60 ------ELEAELARRELKAEAKKM 77
Score = 37.6 bits (88), Expect = 0.003
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
K E+++EE++ E E+ + EE+ E E E+ E+E EE E E E + E
Sbjct: 19 KEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 47.6 bits (114), Expect = 1e-05
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
L +++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 278 LADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.6 bits (114), Expect = 1e-05
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+ L+EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 282 DALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 47.2 bits (113), Expect = 1e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+++ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 46.4 bits (111), Expect = 3e-05
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+ +EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 45.6 bits (109), Expect = 4e-05
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+++ +EE +E + + EEEEEEEEEEEEEE EE+
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAA 323
Score = 42.5 bits (101), Expect = 4e-04
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+++ +EE +E + + EEEEEEEEEEEEEE +E G
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAG 324
Score = 31.0 bits (71), Expect = 2.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+++ +EE +E + + EEEEEEE+E E E
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEP 316
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 48.1 bits (114), Expect = 1e-05
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E + E E+ + + + + E EE E +E E E EK
Sbjct: 365 ETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKA 420
Score = 46.9 bits (111), Expect = 2e-05
Identities = 13/57 (22%), Positives = 20/57 (35%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE E + E E+ + + + + E EE E +E E E E
Sbjct: 364 EETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKA 420
Score = 46.9 bits (111), Expect = 2e-05
Identities = 11/61 (18%), Positives = 21/61 (34%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E E+ + + + + E EE E +E E E E+ + +
Sbjct: 371 IEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPD 430
Query: 404 E 404
E
Sbjct: 431 E 431
Score = 46.9 bits (111), Expect = 3e-05
Identities = 14/82 (17%), Positives = 26/82 (31%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ + + + E EE E +E E E E+ + + EL G
Sbjct: 377 GDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAG 436
Query: 406 HCDFVKLREMLIRTNMEDMREK 427
D + + R + R +
Sbjct: 437 PGDDPAEPDGIRRQDDFSSRRR 458
Score = 46.1 bits (109), Expect = 4e-05
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + E E+ + + + + E EE E +E E E E+
Sbjct: 368 EADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
Score = 45.4 bits (107), Expect = 7e-05
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E + E E+ + + + + E EE E +E E + E
Sbjct: 364 EETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKA 420
Score = 45.0 bits (106), Expect = 1e-04
Identities = 13/62 (20%), Positives = 21/62 (33%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE E + E E+ + + + + E EE E +E E E +
Sbjct: 364 EETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
Query: 407 CD 408
D
Sbjct: 424 PD 425
Score = 44.6 bits (105), Expect = 1e-04
Identities = 12/70 (17%), Positives = 22/70 (31%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + E EE E +E E E E+ + + +E ++ E +
Sbjct: 388 QVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGI 447
Query: 405 GHCDFVKLRE 414
D R
Sbjct: 448 RRQDDFSSRR 457
Score = 43.4 bits (102), Expect = 3e-04
Identities = 11/61 (18%), Positives = 20/61 (32%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + E EE E +E E E E+ + + +E + E +
Sbjct: 386 AHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPD 445
Query: 405 G 405
G
Sbjct: 446 G 446
Score = 43.4 bits (102), Expect = 3e-04
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
G + + + E EE E +E E E E+ + + +E
Sbjct: 377 GDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDE 431
Score = 40.0 bits (93), Expect = 0.004
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E EE E + E E+ + + + + E EE E +
Sbjct: 358 ESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHD 410
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 45.7 bits (109), Expect = 2e-05
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE++ +E+ EE E E E++EE +E E E+E +E + E E + E + EE++
Sbjct: 4 EEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERD 59
Score = 41.1 bits (97), Expect = 7e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE++ +E+ EE E E E++EE +E E E+E +E + ELE
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELE 47
Score = 37.2 bits (87), Expect = 0.012
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ EE E E E++EE +E E E+E +E + E E + E + EE +
Sbjct: 13 VSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERD 59
Score = 34.9 bits (81), Expect = 0.071
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE++ +E+ EE E E E++EE +E E E+E + +
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADA 41
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 47.3 bits (112), Expect = 2e-05
Identities = 15/49 (30%), Positives = 43/49 (87%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E EEE EEE+++EE+++++++E+E++++++++E++E+E++++ L +
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHD 91
Score = 46.9 bits (111), Expect = 2e-05
Identities = 16/59 (27%), Positives = 47/59 (79%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE EEE+++EE+++++++E+E++++++++E++E+E++++ ++ ++ E +NE
Sbjct: 46 EEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETDNE 104
Score = 46.9 bits (111), Expect = 2e-05
Identities = 15/56 (26%), Positives = 45/56 (80%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E EEE EEE+++EE+++++++E+E++++++++E++E+E++++ + ++G
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDG 98
Score = 46.5 bits (110), Expect = 3e-05
Identities = 16/58 (27%), Positives = 46/58 (79%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E EEE EEE+++EE+++++++E+E++++++++E++E+E++++ ++ + NE
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100
Score = 45.8 bits (108), Expect = 6e-05
Identities = 16/50 (32%), Positives = 42/50 (84%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
+E EEE EEE+++EE+++++++E+E++++++++E++E+E + ++ H D
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDD 92
Score = 43.4 bits (102), Expect = 3e-04
Identities = 13/55 (23%), Positives = 44/55 (80%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EEE EEE+++EE+++++++E+E++++++++E++E+E++++ ++ ++ +
Sbjct: 46 EEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100
Score = 43.4 bits (102), Expect = 3e-04
Identities = 14/50 (28%), Positives = 41/50 (82%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
+E EEE EEE+++EE+++++++E+E++++++++E++E+++ ++ D
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDD 92
Score = 42.7 bits (100), Expect = 6e-04
Identities = 14/59 (23%), Positives = 45/59 (76%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE EEE+++EE+++++++E+E++++++++E++E+E++++ ++ ++ E + E
Sbjct: 47 EEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETDNEA 105
Score = 40.0 bits (93), Expect = 0.003
Identities = 12/55 (21%), Positives = 44/55 (80%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+EEE+++EE+++++++E+E++++++++E++E+E++++ ++ ++ E + E
Sbjct: 50 MEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETDNE 104
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 46.8 bits (111), Expect = 2e-05
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E+ E E E++E + EE +EE E+E E +E EE E E E + +L
Sbjct: 322 GDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAE 381
Query: 404 E 404
Sbjct: 382 R 382
Score = 44.9 bits (106), Expect = 9e-05
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
F +E E++E + EE +EE E+E E +E EE E E E + ++ E
Sbjct: 329 FEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAER 382
Score = 44.9 bits (106), Expect = 1e-04
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ E+ E E E++E + EE +EE E+E E +E EE E E E + ++ E
Sbjct: 323 DYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAER 382
Query: 402 ENEGH 406
E
Sbjct: 383 LAETE 387
Score = 44.5 bits (105), Expect = 1e-04
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E E++E + EE +EE E+E E +E EE E E E + ++ E E E+
Sbjct: 333 EVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETEI 388
Score = 43.8 bits (103), Expect = 2e-04
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ EE +EE E+E E +E EE E E E + ++ E E E
Sbjct: 337 KQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETE 387
Score = 43.4 bits (102), Expect = 3e-04
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
Y+ + E E E++E + EE +EE E+E E +E EE E E E + ++ E
Sbjct: 324 YYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAER 382
Score = 43.0 bits (101), Expect = 3e-04
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ N ++E + + E+ E E E++E + EE +EE E+E E +E EE E
Sbjct: 309 ERNGNRIKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAE 368
Query: 398 EKELENE 404
+ LE +
Sbjct: 369 MELLEVQ 375
Score = 29.9 bits (67), Expect = 5.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E + + E+ E E E++E + EE +EE E+E E E E
Sbjct: 316 KELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEE 365
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 47.2 bits (112), Expect = 2e-05
Identities = 20/61 (32%), Positives = 45/61 (73%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+ +E+E+E+EK++E
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Query: 405 G 405
Sbjct: 158 R 158
Score = 46.0 bits (109), Expect = 5e-05
Identities = 20/63 (31%), Positives = 42/63 (66%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ +E + E +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+ +EKE
Sbjct: 89 AAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Query: 402 ENE 404
E E
Sbjct: 149 EKE 151
Score = 45.3 bits (107), Expect = 8e-05
Identities = 25/68 (36%), Positives = 49/68 (72%), Gaps = 5/68 (7%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEE 396
+G EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E E+E+E+E++ EE + E
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDRE 161
Query: 397 EEKELENE 404
EEK+ E
Sbjct: 162 EEKKRERV 169
Score = 44.1 bits (104), Expect = 2e-04
Identities = 22/69 (31%), Positives = 50/69 (72%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+ +E+E+E+E++ EE ++ E E
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEK 164
Query: 406 HCDFVKLRE 414
+ V+ +
Sbjct: 165 KRERVRAKS 173
Score = 43.7 bits (103), Expect = 2e-04
Identities = 19/62 (30%), Positives = 44/62 (70%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +E+ +E+E+E+E++ E
Sbjct: 96 KEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVE 155
Query: 399 KE 400
+
Sbjct: 156 EP 157
Score = 43.3 bits (102), Expect = 4e-04
Identities = 18/60 (30%), Positives = 42/60 (70%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EE+++++E+ +EE ++ + +EE +E+ +E+E+E+E++ EE + EEE++ E+
Sbjct: 114 KEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKS 173
Score = 43.0 bits (101), Expect = 4e-04
Identities = 19/60 (31%), Positives = 42/60 (70%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ +EE+++++E+ +EE ++ + +EE +E+ +E+E+E+E++ EE + EEE+K
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVR 170
Score = 42.6 bits (100), Expect = 6e-04
Identities = 17/60 (28%), Positives = 40/60 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+++++E+ +EE ++ + +EE +E+ +E+E+E+E++ EE + EEE++ E +
Sbjct: 116 EKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRP 175
Score = 42.2 bits (99), Expect = 8e-04
Identities = 21/100 (21%), Positives = 46/100 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ +EE ++ + +EE +E+ +E+E+E+E++ EE + EEE++ E + K+ +
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKK 181
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ K + ++R +EE
Sbjct: 182 KPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEE 221
Score = 41.8 bits (98), Expect = 0.001
Identities = 18/58 (31%), Positives = 40/58 (68%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE+++++E+ +EE ++ + +EE +E+ +E+E+E+E++ EE + EEE++ E
Sbjct: 113 VKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVR 170
Score = 41.4 bits (97), Expect = 0.001
Identities = 16/56 (28%), Positives = 36/56 (64%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E+ +EE ++ + +EE +E+ +E+E+E+E++ EE + EEE++ E + +
Sbjct: 121 KEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPK 176
Score = 40.6 bits (95), Expect = 0.002
Identities = 17/62 (27%), Positives = 38/62 (61%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K + + + +E + E +EEE+E+E+ +EE+++++E+ +EE ++ + +EE
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Query: 399 KE 400
KE
Sbjct: 138 KE 139
Score = 39.1 bits (91), Expect = 0.006
Identities = 17/57 (29%), Positives = 39/57 (68%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
G + + + +E + E +EEE+E+E+ +EE+++++E+ +EE ++ + +EE +EK
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 38.3 bits (89), Expect = 0.012
Identities = 20/101 (19%), Positives = 42/101 (41%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EEE++ E + ++ +++ +++E EEE++ + E + + EE + E E
Sbjct: 159 DREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEERE 218
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445
D K RE ED ++ + + S
Sbjct: 219 KEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPS 259
Score = 37.6 bits (87), Expect = 0.019
Identities = 13/55 (23%), Positives = 36/55 (65%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ + + +E + E +EEE+E+E+ +EE+++++E+ +EE ++ + ++E +
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138
Score = 37.6 bits (87), Expect = 0.021
Identities = 13/57 (22%), Positives = 34/57 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E+ +E+E+E+E++ EE + EEE++ E + ++ +++ +++E +E
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEE 193
Score = 35.6 bits (82), Expect = 0.090
Identities = 13/56 (23%), Positives = 32/56 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ +EE +E+ +E+E+E+E++ EE + EEE++ E + ++ +++
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPN 185
Score = 35.2 bits (81), Expect = 0.11
Identities = 13/55 (23%), Positives = 35/55 (63%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + + +E + E +EEE+E+E+ +EE+++++E+ +EE ++ + + E +
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138
Score = 31.4 bits (71), Expect = 1.7
Identities = 14/59 (23%), Positives = 36/59 (61%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ L +E + E+ + + + +E + E +EEE+E+E+ +EE+++++E+ ++E
Sbjct: 69 SKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Score = 29.9 bits (67), Expect = 5.3
Identities = 15/69 (21%), Positives = 36/69 (52%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIR 418
+ + + +E + E +EEE+E+E+ +EE+++++E+ + E + + +E
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143
Query: 419 TNMEDMREK 427
E +EK
Sbjct: 144 KEKEKEKEK 152
Score = 29.5 bits (66), Expect = 5.9
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEEEE 394
LE ++ E+E++E E + + E+E E+ E+ E ++E E
Sbjct: 323 LEGKKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDGEQQGGLVQKILETKKEYETGSGSA 382
Query: 395 EEEEKELENEG 405
E E +
Sbjct: 383 SPGETEASSAA 393
Score = 29.1 bits (65), Expect = 9.9
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEE 393
+E++E E + + E+E E+ E++ E ++E E
Sbjct: 326 KKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDGEQQGGLVQKILETKKEYETGSGSASPG 385
Query: 394 EEEEEKELENEGHC---DFVKLREML 416
E E + E + +LRE +
Sbjct: 386 ETEASSAAKKERDSSAREIEQLRESI 411
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 46.6 bits (110), Expect = 2e-05
Identities = 30/83 (36%), Positives = 51/83 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++ EEE ++EEEE+E+ EE EE EE E EEE +++E+ E+++E+E + E +E EL
Sbjct: 97 VKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAG 156
Query: 404 EGHCDFVKLREMLIRTNMEDMRE 426
E + V ++ N+ + E
Sbjct: 157 EYIIEEVDDDVAILNENINSIDE 179
Score = 43.9 bits (103), Expect = 2e-04
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
GL + EEE ++EEEE+E+ EE EE EE E EEE +++E+ E+++E+E + + E
Sbjct: 92 GLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDE 151
Query: 403 NE 404
NE
Sbjct: 152 NE 153
Score = 41.6 bits (97), Expect = 0.001
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G ++EEEE+E+ EE EE EE E EEE +++E+ E+++E+E + E +E E E E
Sbjct: 104 GTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYIIEEV 163
Query: 403 NE 404
++
Sbjct: 164 DD 165
Score = 40.8 bits (95), Expect = 0.002
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N E ++EEEE+E+ EE EE EE E EEE +++E+ E+++E+E + E +E E E
Sbjct: 99 NEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGE 157
Score = 40.0 bits (93), Expect = 0.003
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 331 NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEE 388
N+ S + K N + E E + EEE ++EEEE+E+ EE EE EE E EEE +
Sbjct: 73 NVASIANDKSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYD 132
Query: 389 EEEEEEEEEEKELENEG 405
++E+ E+++EKE + EG
Sbjct: 133 DDEDSEKDDEKESDAEG 149
Score = 32.7 bits (74), Expect = 0.53
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
++ + E + E E + EEE ++EEEE+E+ EE EE EE E EEE + + +
Sbjct: 80 DKSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEK 139
Query: 408 D 408
D
Sbjct: 140 D 140
Score = 32.0 bits (72), Expect = 0.94
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+EE EE E EEE +++E+ E+++E+E + E +E E E EE +++
Sbjct: 117 EIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYIIEEVDDD 166
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 43.4 bits (103), Expect = 3e-05
Identities = 19/55 (34%), Positives = 23/55 (41%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
L EE E E EEE EEEEE E E+EE EE + + +
Sbjct: 11 LAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTP 65
Score = 43.4 bits (103), Expect = 3e-05
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE E E EEE EEEEE E E+EE EE + + +
Sbjct: 12 AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66
Score = 43.4 bits (103), Expect = 3e-05
Identities = 19/56 (33%), Positives = 22/56 (39%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE E E EEE EEEEE E E+EE EE + + L
Sbjct: 12 AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPGS 67
Score = 42.7 bits (101), Expect = 6e-05
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EE E E EEE EEEEE E E+EE EE + + +
Sbjct: 13 VRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66
Score = 41.9 bits (99), Expect = 9e-05
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE E E EEE EEEEE E E+EE EE + + +
Sbjct: 12 AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66
Score = 38.1 bits (89), Expect = 0.002
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E E EEE EEEEE E E+EE EE + + +
Sbjct: 19 AEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 47.3 bits (113), Expect = 3e-05
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 334 SFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEE 391
FF K E EE EEE + E E E + ++E+E EE+ EE+E+ ++ E+
Sbjct: 220 PFFTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTED 279
Query: 392 EEEEEEEKELENE 404
++ E KE ++E
Sbjct: 280 LDKLEILKEKKDE 292
Score = 46.2 bits (110), Expect = 5e-05
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
+E E EE EEE + E E E + ++E+E EE+ EE+E+ +K + +
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286
Query: 410 VKLREM 415
+ ++
Sbjct: 287 KEKKDE 292
Score = 44.6 bits (106), Expect = 2e-04
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EEE + E E E + ++E+E EE+ EE+E+ ++ E+ ++ E +++ + E
Sbjct: 234 EREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 44.2 bits (105), Expect = 2e-04
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
+E E EE EEE + E E E + ++E+E EE+ EE+E+ ++ E ++
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286
Query: 409 FVKLRE 414
K E
Sbjct: 287 KEKKDE 292
Score = 36.9 bits (86), Expect = 0.041
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+E E + ++E+E EE+ EE+E+ ++ E+ ++ E +E+++EE
Sbjct: 243 IETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 31.5 bits (72), Expect = 1.9
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
G ++E+E EE+ EE+E+ ++ E+ ++ E +E+++EE
Sbjct: 251 GTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 31.1 bits (71), Expect = 2.5
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMED 423
+E E EE EEE + E E E + ++E++ E F + +E +T D
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLD 281
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 45.2 bits (107), Expect = 3e-05
Identities = 20/54 (37%), Positives = 24/54 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
LE E++ E E E++ E EE EEEE EE EE EE E
Sbjct: 133 LEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 42.8 bits (101), Expect = 1e-04
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E E++ E E E++ E EE EEEE EE EE EE E
Sbjct: 134 EAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 42.5 bits (100), Expect = 2e-04
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E++ E E E++ E EE EEEE EE EE EE E
Sbjct: 134 EAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 41.3 bits (97), Expect = 4e-04
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 342 NGLEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ L + ++ + E E++ E E E++ E EE EEEE EE EE
Sbjct: 119 DKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEE 178
Query: 398 EKELENEG 405
E+
Sbjct: 179 APAEESAE 186
Score = 39.4 bits (92), Expect = 0.002
Identities = 18/50 (36%), Positives = 20/50 (40%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
K N E E++ E EE EEEE EE EE EE E
Sbjct: 137 KKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 36.3 bits (84), Expect = 0.020
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N +++ + ++ ++ E E++ E E E++ E EE EEEE +E
Sbjct: 115 NAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEA 174
Query: 402 ENE 404
E
Sbjct: 175 PAE 177
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 47.1 bits (111), Expect = 3e-05
Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE EE EE EE EE EE EE EE EE EE EE EE +EE E E
Sbjct: 973 ENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEE 1032
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE-ESNV 447
++ + I N E+ E+ + E Y ++ +EE E N+
Sbjct: 1033 NVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENI 1076
Score = 46.7 bits (110), Expect = 4e-05
Identities = 31/69 (44%), Positives = 36/69 (52%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+D + +EE EE EE EE EE EE EE EE EE EE EE EE EE +
Sbjct: 1064 YDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYD 1123
Query: 396 EEEKELENE 404
+E E NE
Sbjct: 1124 DENPEEHNE 1132
Score = 44.8 bits (105), Expect = 2e-04
Identities = 29/61 (47%), Positives = 33/61 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE EE EE EE EE EE EE EE EE EE EE EE ++E EE E +
Sbjct: 1076 IEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEYD 1135
Query: 404 E 404
E
Sbjct: 1136 E 1136
Score = 44.0 bits (103), Expect = 3e-04
Identities = 31/77 (40%), Positives = 38/77 (49%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+++N+ + +EE EE EE EE EE EE EE EE EE EE EE E
Sbjct: 1053 VEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAE 1112
Query: 388 EEEEEEEEEEEKELENE 404
E EE EE + E E
Sbjct: 1113 ENAEENAEEYDDENPEE 1129
Score = 43.6 bits (102), Expect = 3e-04
Identities = 32/80 (40%), Positives = 39/80 (48%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE EE EE EE EE EE EE EE EE EE EE EE EE +E + E
Sbjct: 968 EENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENV 1027
Query: 407 CDFVKLREMLIRTNMEDMRE 426
+ + E N+E++ E
Sbjct: 1028 EEVEENVEEYDEENVEEIEE 1047
Score = 43.6 bits (102), Expect = 4e-04
Identities = 30/77 (38%), Positives = 38/77 (49%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
I++N+ + + E EE EE EE EE EE EE EE EE EE EE E
Sbjct: 1057 IEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAE 1116
Query: 388 EEEEEEEEEEEKELENE 404
E EE ++E +E E
Sbjct: 1117 ENAEEYDDENPEEHNEE 1133
Score = 42.9 bits (100), Expect = 5e-04
Identities = 36/84 (42%), Positives = 45/84 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE EE EE EE EE +EE EE EE EE +EE EE EE EE EE +E
Sbjct: 1003 IEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIE 1062
Query: 404 EGHCDFVKLREMLIRTNMEDMREK 427
E + V+ E I N+E+ E+
Sbjct: 1063 EYDEENVEEIEENIEENIEENVEE 1086
Score = 42.9 bits (100), Expect = 5e-04
Identities = 30/60 (50%), Positives = 32/60 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE+ EE EE EE EE EE EE EE EE EE EE EE EE EE EN
Sbjct: 955 VEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEEN 1014
Score = 42.9 bits (100), Expect = 5e-04
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
I++N+ + + E EE +EE EE EE EE EE EE EE +EE EE EE
Sbjct: 1015 IEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEE 1074
Query: 388 EEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445
EE EE E+ +E E + + E + N E+ E+ + E Y + EE +
Sbjct: 1075 NIEENIEENVEENVE-ENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHN 1131
Score = 42.9 bits (100), Expect = 6e-04
Identities = 30/60 (50%), Positives = 31/60 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE EE+ EE EE EE EE EE EE EE EE EE EE EE EE EN
Sbjct: 951 AEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEEN 1010
Score = 42.9 bits (100), Expect = 6e-04
Identities = 29/63 (46%), Positives = 32/63 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE EE EE EE EE EE EE EE EE EE EE EE EE ++E E+
Sbjct: 1073 EENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNE 1132
Query: 406 HCD 408
D
Sbjct: 1133 EYD 1135
Score = 42.5 bits (99), Expect = 7e-04
Identities = 30/60 (50%), Positives = 33/60 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE+ EE EE+ EE EE EE EE EE EE EE EE EE EE EE EN
Sbjct: 947 IEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEEN 1006
Score = 42.5 bits (99), Expect = 8e-04
Identities = 36/102 (35%), Positives = 45/102 (44%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE EE+ EE EE EE EE EE EE EE EE EE EE EE E+ +E
Sbjct: 952 EENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENV 1011
Query: 406 HCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV 447
+ + E N+E++ E E + E NV
Sbjct: 1012 EENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENV 1053
Score = 42.5 bits (99), Expect = 9e-04
Identities = 35/84 (41%), Positives = 45/84 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE EE EE EE +EE EE EE EE +EE EE EE EE EE EE +E +
Sbjct: 1007 VEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDE 1066
Query: 404 EGHCDFVKLREMLIRTNMEDMREK 427
E + + E I N+E+ E+
Sbjct: 1067 ENVEEIEENIEENIEENVEENVEE 1090
Score = 41.3 bits (96), Expect = 0.002
Identities = 34/102 (33%), Positives = 44/102 (43%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE+ EE EE EE EE EE EE EE EE EE EE EE EE E+ +E
Sbjct: 956 EEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENI 1015
Query: 406 HCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV 447
+ + E + E++ E E+ E N+
Sbjct: 1016 EENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENI 1057
Score = 40.9 bits (95), Expect = 0.002
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+EE EE EE EE EE EE EE +EE EE EE EE +EE EE EE +E
Sbjct: 995 VEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEE 1051
Score = 40.5 bits (94), Expect = 0.003
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+EE EE EE EE EE EE EE EE +EE EE EE EE +EE EE +E
Sbjct: 991 VEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEE 1047
Score = 39.4 bits (91), Expect = 0.007
Identities = 29/60 (48%), Positives = 32/60 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+E E EE+ EE EE+ EE EE EE EE EE EE EE EE EE EN
Sbjct: 939 LKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEEN 998
Score = 37.1 bits (85), Expect = 0.033
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
KY + L+ E+E E+ EEE + EEE +E EE ++ E++ ++E E +
Sbjct: 423 KYMDMLDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVN 482
Query: 399 KELENEGHCDFVK 411
+ +E + + V+
Sbjct: 483 EIVEEQSVNEHVE 495
Score = 36.3 bits (83), Expect = 0.056
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
N E EE EE EE EE EE EE EE ++E EE EE +E
Sbjct: 1091 NVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136
Score = 35.9 bits (82), Expect = 0.076
Identities = 27/58 (46%), Positives = 30/58 (51%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E +E E EE+ EE EE+ EE EE EE EE EE EE EE EE EN
Sbjct: 937 EHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEEN 994
Score = 34.4 bits (78), Expect = 0.22
Identities = 27/65 (41%), Positives = 30/65 (46%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K E E +E E EE+ EE EE+ EE EE EE EE EE EE EE
Sbjct: 926 KELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEE 985
Query: 399 KELEN 403
EN
Sbjct: 986 NVEEN 990
Score = 32.1 bits (72), Expect = 1.2
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E+ EEE + EEE +E EE ++ E++ ++E E + E EE+ E
Sbjct: 436 VEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVNEIVEEQSVNEHVE 495
Query: 404 E 404
E
Sbjct: 496 E 496
Score = 30.9 bits (69), Expect = 2.5
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
FD + ++ + E+E E+ EEE + EEE +E EE ++ E++ ++E
Sbjct: 416 LFDLEKQKYMDMLDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDES 475
Query: 395 EEEEKELE 402
E + E
Sbjct: 476 GEHQSVNE 483
Score = 30.5 bits (68), Expect = 3.1
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE+++ + + E+E E+ EEE + EEE +E EE ++ E++ +++ E+
Sbjct: 419 LEKQKYMDMLDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEH 478
Query: 404 EGHCDFVK 411
+ + V+
Sbjct: 479 QSVNEIVE 486
Score = 30.5 bits (68), Expect = 3.1
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N + +E + + E E +E E EE+ EE EE+ EE EE EE EE EE E
Sbjct: 922 NLINKELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVE 980
Score = 30.5 bits (68), Expect = 3.5
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E+E +E EE +E EE++ +E EE EE EEE EE EE +++ +
Sbjct: 504 EQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEISTAEEHIEEPASDVQQDSE 563
Query: 407 CD 408
Sbjct: 564 AA 565
Score = 30.1 bits (67), Expect = 4.1
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+EE + E+E +E EE +E EE++ +E EE EE EEE E+ +E
Sbjct: 494 VEEPTVADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEISTAEEHIE 552
Score = 30.1 bits (67), Expect = 5.0
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLR 413
E+E E+ EEE + EEE +E EE ++ E++ ++E + + +
Sbjct: 432 EDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVNEIVEEQSVN 491
Query: 414 EMLIRTNMEDMREK 427
E + + D+ E+
Sbjct: 492 EHVEEPTVADIVEQ 505
Score = 30.1 bits (67), Expect = 5.1
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EEE + EEE +E EE ++ E++ ++E E + E EE+ + +E
Sbjct: 438 DNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVNEIVEEQSVNEHVEEP 497
Query: 405 GHCDFVK 411
D V+
Sbjct: 498 TVADIVE 504
Score = 29.8 bits (66), Expect = 5.6
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E+E +E EE +E EE++ +E EE EE EEE EE EE + + ++
Sbjct: 503 VEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEISTAEEHIEEPASDVQQDS 562
Query: 404 E 404
E
Sbjct: 563 E 563
Score = 29.8 bits (66), Expect = 6.0
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ + E+E +E EE +E EE++ +E EE EE EEE EE EE
Sbjct: 499 VADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEISTAEEHIEE 553
Score = 29.4 bits (65), Expect = 9.0
Identities = 23/83 (27%), Positives = 36/83 (43%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E EE +E EE++ +E EE EE EEE EE EE + +++ E
Sbjct: 509 DEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEISTAEEHIEEPASDVQQDSEAAPTI 568
Query: 406 HCDFVKLREMLIRTNMEDMREKT 428
++L DM+E +
Sbjct: 569 EIPDTLFYDILGVGVNADMKEIS 591
Score = 29.0 bits (64), Expect = 9.8
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E EE + E+E +E EE +E EE++ +E EE EE EEE E
Sbjct: 490 VNEHVEEPTVADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEISTAE 548
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 46.4 bits (111), Expect = 3e-05
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+EE EE EE E E+ E ++ E+ EE EEE++++ +++ +E+++E E
Sbjct: 332 IEENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
Score = 45.6 bits (109), Expect = 5e-05
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
C EE EE EE E E+ E ++ E+ EE EEE++++ +++ +E+++E
Sbjct: 325 CWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGV 384
Query: 398 E 398
E
Sbjct: 385 E 385
Score = 44.1 bits (105), Expect = 2e-04
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE EE EE E E+ E ++ E+ EE EEE++++ +++ +E+++E E
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
Score = 43.3 bits (103), Expect = 3e-04
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE EE EE E E+ E ++ E+ EE EEE++++ +++ +E++++ +E
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
Score = 40.6 bits (96), Expect = 0.002
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE EE EE E E+ E ++ E+ EE EEE++++ +++ E ++EG
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGV 384
Score = 37.5 bits (88), Expect = 0.018
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
EE EE EE E E+ E ++ E+ EE EEE++++ + + + +
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEG 383
Score = 32.9 bits (76), Expect = 0.45
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 23/89 (25%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEE-----------------------EEEEEEEEEEEEEEE 380
L+EEE EE + E E EE EE EE E E
Sbjct: 288 LDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPE 347
Query: 381 EEEEEEEEEEEEEEEEEEKELENEGHCDF 409
+ E ++ E+ EE E+E +++ D+
Sbjct: 348 KVEFMWDDYHREQLEEVEEEDDDDWDDDW 376
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 46.4 bits (111), Expect = 4e-05
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E +EE EE E +E E E +EE+ ++ E + E + E+ K LE+
Sbjct: 395 EGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLA 454
Query: 406 HCDFVKLREM 415
+L ++
Sbjct: 455 EQAVDELIDI 464
Score = 46.0 bits (110), Expect = 5e-05
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+EE EE E +E E E +EE+ ++ E + E + E+ + ++L +
Sbjct: 398 DEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQA 457
Query: 406 HCDFVKLRE 414
+ + +
Sbjct: 458 VDELIDIEG 466
Score = 46.0 bits (110), Expect = 5e-05
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
G EE EE E E +EE EE E +E E E +EE+ ++ + L
Sbjct: 375 EGFSSLEELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGL 434
Query: 402 ENEGHCDFVKLREMLIRTNMEDMRE 426
+ E KL E I+T +ED+ E
Sbjct: 435 DRE---LAFKLAEKGIKT-LEDLAE 455
Score = 44.1 bits (105), Expect = 2e-04
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
F+ LEE EE E E +EE EE E +E E E +EE+ ++ E
Sbjct: 377 FSSLEELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDR 436
Score = 42.5 bits (101), Expect = 5e-04
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
LE E +EE+ ++ E + E + E+ + E+ E+ +E + E ++E
Sbjct: 411 EALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDEE 469
Score = 42.5 bits (101), Expect = 5e-04
Identities = 11/60 (18%), Positives = 26/60 (43%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ +EE+ ++ E + E + E+ + E+ E+ +E + E +EE+
Sbjct: 411 EALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDEEK 470
Score = 42.5 bits (101), Expect = 6e-04
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 342 NGLEEEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
G +EE EE E +E E E +EE+ ++ E + E + E+ + E+
Sbjct: 395 EGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLA 454
Query: 400 EL 401
E
Sbjct: 455 EQ 456
Score = 42.2 bits (100), Expect = 6e-04
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E +EE+ ++ E + E + E+ + E+ E+ +E + E +EEK
Sbjct: 416 EALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDEEK 470
Score = 42.2 bits (100), Expect = 8e-04
Identities = 22/62 (35%), Positives = 27/62 (43%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L EE EE EE E E +EE EE E +E E E +EE+ + L
Sbjct: 372 LVEEGFSSLEELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSL 431
Query: 404 EG 405
EG
Sbjct: 432 EG 433
Score = 41.8 bits (99), Expect = 9e-04
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E E E +EE+ ++ E + E + E+ + E+ E+ +E + E +
Sbjct: 409 AKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDE 468
Query: 404 E 404
E
Sbjct: 469 E 469
Score = 41.8 bits (99), Expect = 0.001
Identities = 11/57 (19%), Positives = 26/57 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E +EE+ ++ E + E + E+ + E+ E+ +E + E +E++
Sbjct: 414 ETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDEEK 470
Score = 35.6 bits (83), Expect = 0.089
Identities = 21/70 (30%), Positives = 28/70 (40%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+EE + EE EE EE E E +EE EE E +E E E E +
Sbjct: 365 DEEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKL 424
Query: 406 HCDFVKLREM 415
D + L +
Sbjct: 425 ADDLLSLEGL 434
Score = 34.8 bits (81), Expect = 0.13
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
F + +EE + EE EE EE E E +EE EE E +E E
Sbjct: 356 DLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDEETVEELRERAKEALET 415
Query: 399 KELENE 404
+ L E
Sbjct: 416 EALAQE 421
Score = 33.7 bits (78), Expect = 0.31
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEEEEEEEEEE 395
EEE E+ + E + + E + +EE + EE EE E E +E
Sbjct: 340 EEEASEKRQAEFDAILDLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDE 399
Query: 396 EEEKELEN 403
E +EL
Sbjct: 400 ETVEELRE 407
Score = 32.5 bits (75), Expect = 0.76
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 27/87 (31%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEE---------------------------EEEEEE 377
EE E+ + E + + E + +EE E +EE
Sbjct: 341 EEASEKRQAEFDAILDLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDEE 400
Query: 378 EEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E +E E E +E++L ++
Sbjct: 401 TVEELRERAKEALETEALAQEEKLADD 427
Score = 31.0 bits (71), Expect = 2.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
D GL+ E + E+ + E+ E+ +E + E +EE+
Sbjct: 427 DLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDEEK 470
Score = 30.6 bits (70), Expect = 2.6
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ L+ E + +EE + EE EE EE E E +EE EE E K
Sbjct: 351 FDAILDLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDEETVEELRERAK 410
Query: 400 E 400
E
Sbjct: 411 E 411
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 46.0 bits (109), Expect = 4e-05
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE EE+E+E+ + ++ E+E+E+EE E E EEEE EE E ++EE++ E
Sbjct: 284 EEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVT 343
Query: 405 GHCDFVKLR 413
D + R
Sbjct: 344 VSPDGGRRR 352
Score = 43.7 bits (103), Expect = 2e-04
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-- 387
+ SFF K E++E E +EE EEE + + E+E E +E+E+E+E
Sbjct: 216 NIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPK 275
Query: 388 ---------EEEEEEEEEEEKELEN 403
EE EE+E+E+ K L+
Sbjct: 276 PSGERSDSEEETEEKEKEKRKRLKK 300
Score = 41.0 bits (96), Expect = 0.002
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 342 NGLEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
GL+E+E+E+E E + EEE EE+E+E+ + ++ E+E+E+EE E E EEE
Sbjct: 263 TGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEE 322
Query: 397 EEKELENE 404
E +E E
Sbjct: 323 ESEEPEPP 330
Score = 37.5 bits (87), Expect = 0.019
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE+E E +E+E+E+E + E + EEE EE+E+E+ + ++ E+E+E+E+
Sbjct: 255 LEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEI 313
Score = 36.4 bits (84), Expect = 0.046
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L++ E+E+E+EE E E EEEE EE E ++EEE+EE +
Sbjct: 298 LKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRG 353
Score = 36.4 bits (84), Expect = 0.048
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E +E+E+E+E + E + EEE EE+E+E+ + ++ E+E+E+EE E
Sbjct: 259 SAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVP 315
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 46.2 bits (110), Expect = 4e-05
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ EEEEE E +E+ EE + EEE E +E E++ E E E+EE K+ E
Sbjct: 182 LKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEE 241
Query: 404 EGHCDFVKLREMLIRT---------NMEDMREKTHCRHYELYRKKRLEEESN 446
KLR+ L R N ++ R + K+++EEE N
Sbjct: 242 -------KLRQELERQAEAHEQKLKNELALQAIELQREFNKEIKEKVEEERN 286
Score = 38.9 bits (91), Expect = 0.007
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K L + EEE E +E E++ E E E+EE ++ EE+ +E E + E E+
Sbjct: 197 KREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQ 256
Query: 399 KELENE 404
K L+NE
Sbjct: 257 K-LKNE 261
Score = 38.5 bits (90), Expect = 0.010
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ L ++ E + EEEEE E +E+ EE + EEE E +E E++ E E+E
Sbjct: 173 DQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREK 232
Query: 402 E 402
E
Sbjct: 233 E 233
Score = 38.5 bits (90), Expect = 0.010
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ + LEEE E +E E++ E E E+EE ++ EE+ +E E + E E++ +
Sbjct: 200 ELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLK 259
Query: 399 KELE 402
EL
Sbjct: 260 NELA 263
Score = 31.9 bits (73), Expect = 0.99
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L E E E+EE ++ EE+ +E E + E E++ + E + E + E +E ++++
Sbjct: 222 KQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQREFNKEIKEKV 281
Query: 402 ENE 404
E E
Sbjct: 282 EEE 284
Score = 31.5 bits (72), Expect = 1.6
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ E++ E E E+EE ++ EE+ +E E + E E++ + E + E + E
Sbjct: 214 ESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQREF 273
Query: 398 EKELEN 403
KE++
Sbjct: 274 NKEIKE 279
Score = 29.2 bits (66), Expect = 7.4
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE E E+EE ++ EE+ +E E + E E++ + E + E + E +E +E+ E E
Sbjct: 226 LEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQREFNKEIKEKVEEER 285
Query: 404 EGH 406
G
Sbjct: 286 NGR 288
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 45.4 bits (108), Expect = 4e-05
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
KY + +E+E EEEEE+ E+ EE +E +E EE EE+ E E EEE +EE
Sbjct: 24 KYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEEL 83
Query: 399 KELENEGHCDFVKLR----------EMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVI 448
+ +E KL+ E + +E+ + + + YE R++ LEE +I
Sbjct: 84 LKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELI 143
Query: 449 G 449
Sbjct: 144 E 144
Score = 37.7 bits (88), Expect = 0.011
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEE-EEEEEEEEEEEEEEEE 388
K ++ + L+ E ++ + +E+E EEEEE+ E+ EE +E +E E
Sbjct: 3 KVIFKRSNVINKEKLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIE 62
Query: 389 EEEEEEEEEEKELENEGHCDFVKLRE----MLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E EE+ E + E E + +K + ++ + M+ RE+ +RL EE
Sbjct: 63 EAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEE----ELERLIEE 118
Query: 445 S 445
+
Sbjct: 119 A 119
Score = 34.6 bits (80), Expect = 0.12
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEE +EE ++ +E E+ + + E E+EE EEE E EE + E EE ++ EG
Sbjct: 76 EEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEG 135
Query: 406 HCDFVKLREMLIR 418
+ +L E L +
Sbjct: 136 LEEVRELIEQLNK 148
Score = 32.7 bits (75), Expect = 0.52
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+ + + E E+EE EEE E EE + E EE E+ EE EE E E+
Sbjct: 90 ASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQ 145
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 46.2 bits (110), Expect = 4e-05
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ EEE E++++ E+EEE+++ E+ EE LE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLE 303
Score = 45.0 bits (107), Expect = 1e-04
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
L + EEE E++++ E+EEE+++ E+ EE
Sbjct: 258 LPAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 39.6 bits (93), Expect = 0.004
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EEE E++++ E+EEE+++ E E
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 34.6 bits (80), Expect = 0.16
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ EEE E++++ E+EE++ + E
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAED 294
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 45.3 bits (107), Expect = 5e-05
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEE 395
LE EEE+E EEEEEE EEEEE + E++ E +++ +E E E +E+ E
Sbjct: 5 LELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALE 64
Query: 396 EEEKELENEGHCDFVKLREMLIRTNMEDMREKT 428
EE K E + +K+ E ++ +E + T
Sbjct: 65 EEAKRKAEERKRETLKIVEEEVKKELELKKRNT 97
Score = 42.2 bits (99), Expect = 5e-04
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 39/141 (27%)
Query: 343 GLEEEEEEEEEEEEEEEEEEE----------------EEEEEEEEEEEEEEEEEEEEEEE 386
G EEEEE EEEEE + E++ E +E E E +E+ EEE + + EE
Sbjct: 14 GEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRKAEE 73
Query: 387 ---------EEEEEEEEEEEEKELENEGHCDFV--------------KLREMLIRTNMED 423
EEE ++E E +++ E + D V KLRE+ +
Sbjct: 74 RKRETLKIVEEEVKKELELKKRNTLLEANIDDVDTDDENEEEEYEAWKLRELKRIKRDRE 133
Query: 424 MREKTHCRHYELYRKKRLEEE 444
RE+ E+ + + + EE
Sbjct: 134 EREEMEREKAEIEKMRNMTEE 154
Score = 38.4 bits (89), Expect = 0.007
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDM 424
E E E EEE+E EEEEEE EEEEE + E++ E L+ F + ++ + T E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPV----FTRKKDRI--TIQERE 54
Query: 425 REKTHCRHYELYRKKRLEE 443
RE + E K++ EE
Sbjct: 55 REAAKEKALEEEAKRKAEE 73
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 45.5 bits (107), Expect = 5e-05
Identities = 35/106 (33%), Positives = 42/106 (39%), Gaps = 42/106 (39%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------------------------- 375
+G EEE EEE EEE E+ + E+EE E E
Sbjct: 56 DGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLSTVTLGYGGDATPGTGNIGLAA 115
Query: 376 ----------------EEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+E +E+EEEEEEEEEEE E EE E G
Sbjct: 116 LQLPKKAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQGTNG 161
Score = 44.7 bits (105), Expect = 8e-05
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------- 386
K N ++ +E+E +E+EEEEEEEEEEE E EE E+ E
Sbjct: 119 PKKAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGG 178
Query: 387 ---EEEEEEEEEEEEKE 400
EE EEE E E E
Sbjct: 179 DNGEEGEEESVTEAEAE 195
Score = 36.6 bits (84), Expect = 0.029
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ EE + + EEE EEE EEE E+ + E+EE E EN
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAEN 90
Score = 36.2 bits (83), Expect = 0.036
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
K+ Y + K F+ + EE + + EEE EEE EEE E+ + E+EE E E
Sbjct: 31 KHAYFYPPLKRFSVQSGSDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 35.4 bits (81), Expect = 0.081
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ EE + + EEE EEE EEE E+ + E+EE E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 35.1 bits (80), Expect = 0.084
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ EE + + EEE EEE EEE E+ + E+EE E E L
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTL 93
Score = 35.1 bits (80), Expect = 0.086
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ EE + + EEE EEE EEE E+ + E+EE E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 35.1 bits (80), Expect = 0.086
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ EE + + EEE EEE EEE E+ + E+EE E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 35.1 bits (80), Expect = 0.086
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ EE + + EEE EEE EEE E+ + E+EE E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 35.1 bits (80), Expect = 0.086
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ EE + + EEE EEE EEE E+ + E+EE E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 35.1 bits (80), Expect = 0.086
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ EE + + EEE EEE EEE E+ + E+EE E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 35.1 bits (80), Expect = 0.086
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ EE + + EEE EEE EEE E+ + E+EE E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 35.1 bits (80), Expect = 0.086
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ EE + + EEE EEE EEE E+ + E+EE E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 35.1 bits (80), Expect = 0.086
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ EE + + EEE EEE EEE E+ + E+EE E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 34.3 bits (78), Expect = 0.16
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ EE + + EEE EEE EEE E+ + E++E E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAEN 90
Score = 29.7 bits (66), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
+ EE + + EEE EEE EEE +++G+ D
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNED 83
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 45.6 bits (108), Expect = 5e-05
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------EEEEEEEEEEEEE 392
+++EEE E E+E + EE E++ ++EEEE+ + E+ +EEE EE
Sbjct: 169 KDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINY 228
Query: 393 EEEEEEKELENE 404
E+ E E +
Sbjct: 229 NEDTSESESDES 240
Score = 44.1 bits (104), Expect = 2e-04
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEE 391
+ EE E E+E + EE E++ ++EEEE+ + E+ +EEE EE
Sbjct: 170 DDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYN 229
Query: 392 EEEEEEEKELENE 404
E+ E E + +
Sbjct: 230 EDTSESESDESDS 242
Score = 44.1 bits (104), Expect = 2e-04
Identities = 16/55 (29%), Positives = 38/55 (69%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ +++ ++ +++E +E ++++EEE E E+E + EE E++ ++EEEE+ + E
Sbjct: 149 GKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 43.7 bits (103), Expect = 2e-04
Identities = 17/55 (30%), Positives = 39/55 (70%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
G +++ ++ +++E +E ++++EEE E E+E + EE E++ ++EEEE+ + E+
Sbjct: 149 GKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 43.3 bits (102), Expect = 3e-04
Identities = 15/59 (25%), Positives = 40/59 (67%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ + +++ ++ +++E +E ++++EEE E E+E + EE E++ ++EEEE+ + ++
Sbjct: 146 AKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDY 204
Score = 42.9 bits (101), Expect = 4e-04
Identities = 16/63 (25%), Positives = 39/63 (61%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
K + ++ + +++ ++ +++E +E ++++EEE E E+E + EE E++ ++EEE
Sbjct: 137 DKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEE 196
Query: 398 EKE 400
E
Sbjct: 197 EDS 199
Score = 42.1 bits (99), Expect = 7e-04
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ EE E++ ++EEEE+ + E+ +EEE EE E+ E E +E
Sbjct: 181 SKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDES 240
Query: 391 EEEEEEEEKELENE 404
+ E E ++E
Sbjct: 241 DSEISESRSVSDSE 254
Score = 42.1 bits (99), Expect = 8e-04
Identities = 17/57 (29%), Positives = 38/57 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++ +++E +E ++++EEE E E+E + EE E++ ++EEEE+ + E+ + + L
Sbjct: 155 TKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGML 211
Score = 42.1 bits (99), Expect = 8e-04
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEEEEEEEEEEEEE 393
E E+E + EE E++ ++EEEE+ + E+ +EEE EE E+ E
Sbjct: 175 SESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSE 234
Query: 394 EEEEEKELEN 403
E +E + E
Sbjct: 235 SESDESDSEI 244
Score = 41.7 bits (98), Expect = 0.001
Identities = 17/62 (27%), Positives = 42/62 (67%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
++ + +++ ++ +++E +E ++++EEE E E+E + EE E++ ++EEEE+ + E+
Sbjct: 147 KKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQ 206
Query: 407 CD 408
D
Sbjct: 207 YD 208
Score = 41.0 bits (96), Expect = 0.002
Identities = 15/57 (26%), Positives = 39/57 (68%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ + +++ ++ +++E +E ++++EEE E E+E + EE E++ ++EEEE+ +
Sbjct: 147 KKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 39.8 bits (93), Expect = 0.004
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEEEEEEEEEEEEEEEEEE 393
E + EE E++ ++EEEE+ + E+ +EEE EE E+ E E +E
Sbjct: 180 ESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDE 239
Query: 394 EEEEEKE 400
+ E E
Sbjct: 240 SDSEISE 246
Score = 39.0 bits (91), Expect = 0.007
Identities = 15/59 (25%), Positives = 40/59 (67%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + ++ + +++ ++ +++E +E ++++EEE E E+E + EE E++ ++EE+E +
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDS 201
Score = 38.7 bits (90), Expect = 0.010
Identities = 15/62 (24%), Positives = 42/62 (67%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E + ++ + +++ ++ +++E +E ++++EEE E E+E + EE E++ ++E+E ++
Sbjct: 140 LGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDS 199
Query: 404 EG 405
+
Sbjct: 200 DS 201
Score = 37.9 bits (88), Expect = 0.015
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 342 NGLEEEEEEEEE-------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+ EEEE+ + E +EEE EE E+ E E +E + E E
Sbjct: 191 SDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSV 250
Query: 389 EEEEEEEEEEKELENE 404
+ EE K+ + +
Sbjct: 251 SDSEESSPPSKKPKEK 266
Score = 37.9 bits (88), Expect = 0.016
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 329 DKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
D YS +D + +EEE EE E+ E E +E + E E + EE
Sbjct: 200 DSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPP 259
Query: 389 EEEEEEEEEEK 399
++ +E++
Sbjct: 260 SKKPKEKKTSS 270
Score = 36.7 bits (85), Expect = 0.032
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ ++ ++EEEE+ + E+ + + + +EEE EE E+ E E +E + +
Sbjct: 185 ESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEI 244
Score = 35.2 bits (81), Expect = 0.10
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+EEE EE E+ E E +E + E E + EE ++ +E+K
Sbjct: 214 SSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKT 268
Score = 34.4 bits (79), Expect = 0.16
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
D ++G+ + +EEE EE E+ E E +E + E E + EE ++
Sbjct: 203 DYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKK 262
Query: 397 EEKELENE 404
+++ +
Sbjct: 263 PKEKKTSS 270
Score = 34.0 bits (78), Expect = 0.22
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EEE EE E+ E E +E + E E + EE ++ +E++ L
Sbjct: 217 EEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTFL 273
Score = 32.5 bits (74), Expect = 0.81
Identities = 11/53 (20%), Positives = 34/53 (64%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E + ++ + +++ ++ +++E +E ++++EEE E E+E + EE ++ ++
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEE 195
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 45.2 bits (107), Expect = 5e-05
Identities = 20/46 (43%), Positives = 38/46 (82%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ ++ ++ ++EE+++++ + EE+E +E+EEEEE EEEEEEE+E+E
Sbjct: 240 SDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 44.8 bits (106), Expect = 7e-05
Identities = 20/54 (37%), Positives = 41/54 (75%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+++ + + + ++ ++EE+++++ + EE+E +E+EEEEE EEEEEEE+E+E
Sbjct: 232 SQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 44.0 bits (104), Expect = 1e-04
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 7/68 (10%)
Query: 344 LEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
LEE E+E + +++ ++ ++EE+++++ + EE+E +E+EEEEE EEE
Sbjct: 218 LEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEE 277
Query: 397 EEKELENE 404
EE+E E+E
Sbjct: 278 EEEEDEDE 285
Score = 29.8 bits (67), Expect = 4.7
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEE 366
D Y E +E+EEEEE EEEEEEE+E+E
Sbjct: 256 DGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 29.4 bits (66), Expect = 5.3
Identities = 10/60 (16%), Positives = 35/60 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+++ + EE E+E + +++ + + + ++ ++EE+++++ + EE+E + + E
Sbjct: 212 QDKNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEE 271
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 45.4 bits (108), Expect = 6e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ + E E E EEEEEE EE EEE EE+ + + + EE +E+EE +
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRR 190
Score = 45.4 bits (108), Expect = 6e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + E E E EEEEEE EE EEE EE+ + + + EE +E++EL
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRR 190
Score = 45.4 bits (108), Expect = 6e-05
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ + E E E EEEEEE EE EEE EE+ + + + EE +E+EE +
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRS 191
Score = 45.0 bits (107), Expect = 9e-05
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
L + + E E E EEEEEE EE EEE EE+ + + + EE +E+EE
Sbjct: 138 LPKPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 43.9 bits (104), Expect = 2e-04
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ + E E E EEEEEE EE EEE EE+ + + + EE +E+EE
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 43.9 bits (104), Expect = 2e-04
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ + E E E EEEEEE EE EEE EE+ + + + EE +E+EE
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 43.9 bits (104), Expect = 2e-04
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ + E E E EEEEEE EE EEE EE+ + + + EE +E+EE
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 43.5 bits (103), Expect = 3e-04
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
N E E EEEEEE EE EEE EE+ + + + EE +E+EE
Sbjct: 143 NEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 46.1 bits (109), Expect = 6e-05
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N L+E+ ++++ + E++E+ E+ EE +E EE E+ + +EE E+ E E++ +
Sbjct: 4041 NTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQA-I 4099
Query: 402 ENEGHCD 408
+N D
Sbjct: 4100 DNHPKMD 4106
Score = 45.8 bits (108), Expect = 9e-05
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE +E+ ++++ + E++E+ E+ EE +E EE E+ + +EE E+ + E+
Sbjct: 4037 LEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPED 4096
Query: 404 EG 405
+
Sbjct: 4097 QA 4098
Score = 45.4 bits (107), Expect = 1e-04
Identities = 17/59 (28%), Positives = 36/59 (61%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E +EE + E++E ++E+ EE +E+ ++++ + E++E+ E+ EE ENE
Sbjct: 4017 DENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENE 4075
Score = 45.0 bits (106), Expect = 2e-04
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N L E+++ EE EE+ + + +E E E E + ++ E E + EEE ++L
Sbjct: 3829 NTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDL 3888
Query: 402 ENE 404
+ E
Sbjct: 3889 DEE 3891
Score = 43.1 bits (101), Expect = 5e-04
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E +EE + E++E ++E+ EE +E+ ++++ + E++E+ E+ EE +E E
Sbjct: 4016 ADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENE 4075
Query: 403 NE 404
Sbjct: 4076 ES 4077
Score = 43.1 bits (101), Expect = 5e-04
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE +E+ ++++ + E++E+ E+ EE +E EE E+ + +EE E+ E+ +
Sbjct: 4038 EENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Query: 406 HCD 408
D
Sbjct: 4098 AID 4100
Score = 43.1 bits (101), Expect = 6e-04
Identities = 16/62 (25%), Positives = 36/62 (58%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++E+ EE +E+ ++++ + E++E+ E+ EE +E EE E+ + ++ELE
Sbjct: 4031 MQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQ 4090
Query: 404 EG 405
Sbjct: 4091 GE 4092
Score = 43.1 bits (101), Expect = 6e-04
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E +EE + E++E ++E+ EE +E+ ++++ + E++E+ E+ EE + E
Sbjct: 4017 DENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEE 4076
Query: 405 GHCDFVKLREML 416
D VK E L
Sbjct: 4077 STEDGVKSDEEL 4088
Score = 41.9 bits (98), Expect = 0.001
Identities = 15/62 (24%), Positives = 35/62 (56%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ LE E++ E+ E + +E++ + E+++ +E+E+EEE ++ ++E +
Sbjct: 3915 DLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQ 3974
Query: 402 EN 403
EN
Sbjct: 3975 EN 3976
Score = 41.9 bits (98), Expect = 0.001
Identities = 23/101 (22%), Positives = 47/101 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ E+ + +E+E + ++ + E+ + E +E +EE + E++E ++E+ EE E+
Sbjct: 3987 LDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDED 4046
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
DF L E + N + E + +EE
Sbjct: 4047 IQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEE 4087
Score = 40.8 bits (95), Expect = 0.003
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE EE+ + + +E E E E + ++ E E + EEE ++ +EE
Sbjct: 3837 LEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIP 3896
Query: 404 E 404
E
Sbjct: 3897 E 3897
Score = 40.8 bits (95), Expect = 0.003
Identities = 18/85 (21%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE+++ +E+E+EEE ++ ++E + + +E + E E+ + E+ + +E+E ++
Sbjct: 3943 KALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDV 4002
Query: 402 ENEGHCDFVKLREMLIRTNMEDMRE 426
+ L +M + E+ E
Sbjct: 4003 SKD-----SDLEDMDMEAADENKEE 4022
Score = 40.8 bits (95), Expect = 0.003
Identities = 15/60 (25%), Positives = 36/60 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E EE+ E E++ E+ E + +E++ + E+++ +E+E+EEE ++ +++E
Sbjct: 3909 DEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDE 3968
Score = 40.4 bits (94), Expect = 0.004
Identities = 14/60 (23%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+ E E++ E+ E + +E++ + E+++ +E+E+EEE ++ + E++ +
Sbjct: 3913 EEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPD 3972
Score = 40.4 bits (94), Expect = 0.004
Identities = 18/70 (25%), Positives = 40/70 (57%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N L E+ +E EE+ E E++ E+ E + +E++ + E+++ +E+E+EE+
Sbjct: 3901 NSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMS 3960
Query: 402 ENEGHCDFVK 411
++ G D ++
Sbjct: 3961 DDVGIDDEIQ 3970
Score = 40.0 bits (93), Expect = 0.005
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
F+ L E++E+ E+ EE +E EE E+ + +EE E+ E E++ + + + +
Sbjct: 4052 FSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTF 4111
Query: 401 LENE 404
E
Sbjct: 4112 ASAE 4115
Score = 39.2 bits (91), Expect = 0.009
Identities = 18/81 (22%), Positives = 36/81 (44%)
Query: 324 SNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
N T+D+++ E+ E+ EE +E EE E+ + +EE E+ E E++
Sbjct: 4039 ENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQA 4098
Query: 384 EEEEEEEEEEEEEEEKELENE 404
+ + + + E + E
Sbjct: 4099 IDNHPKMDAKSTFASAEADEE 4119
Score = 38.8 bits (90), Expect = 0.010
Identities = 13/58 (22%), Positives = 32/58 (55%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E++ E+ E + +E++ + E+++ +E+E+EEE ++ ++E + E
Sbjct: 3918 ETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQE 3975
Score = 38.8 bits (90), Expect = 0.010
Identities = 12/58 (20%), Positives = 32/58 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E + +E++ + E+++ +E+E+EEE ++ ++E + + +E + E E+
Sbjct: 3929 ANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENED 3986
Score = 38.4 bits (89), Expect = 0.013
Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL-EN 403
E+ E + +E++ + E+++ +E+E+EEE ++ ++E + + +E + EN
Sbjct: 3925 EQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPEN 3984
Query: 404 E 404
E
Sbjct: 3985 E 3985
Score = 38.4 bits (89), Expect = 0.015
Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EE 392
+D L E E++ E+ E + +E++ + E+++ +E+E+EEE ++ ++
Sbjct: 3908 WDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDD 3967
Query: 393 EEEEEEKE 400
E + + +E
Sbjct: 3968 EIQPDIQE 3975
Score = 38.1 bits (88), Expect = 0.020
Identities = 18/83 (21%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N + +E++ + E+++ +E+E+EEE ++ ++E + + +E + E E+ +L
Sbjct: 3930 NNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDL 3989
Query: 402 ENEGHCDFVKLREMLIRTNMEDM 424
+ D K ++ +++EDM
Sbjct: 3990 PEDLKLD-EKEGDVSKDSDLEDM 4011
Score = 35.0 bits (80), Expect = 0.16
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEEEEEEEEE 390
NG+ ++ E E + EEE ++ +EE + E +E EE+ E E++
Sbjct: 3865 NGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSN 3924
Query: 391 EEEEEEEEKELENE 404
E+ E +L ++
Sbjct: 3925 EQSAANNESDLVSK 3938
Score = 33.8 bits (77), Expect = 0.39
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 23/83 (27%)
Query: 345 EEEEEEEEEEEE-----------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ EEE ++ +EE +E EE+ E E++ E+ E + +E
Sbjct: 3880 DSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKE 3939
Query: 388 ------EEEEEEEEEEEKELENE 404
E+++ +E+E+E+E+ ++
Sbjct: 3940 DDNKALEDKDRQEKEDEEEMSDD 3962
Score = 33.4 bits (76), Expect = 0.45
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 342 NGLEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+G EE +E EE E+ + +EE E+ E E++ + + + + E +EE +K
Sbjct: 4065 DGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDK 4123
Score = 33.4 bits (76), Expect = 0.45
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 20/102 (19%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEE 381
+ N E+ EEE+E+++E E+E+ ++ +++ E E EEE
Sbjct: 2914 TGMKYGTGNINVSEQIEEEDEKDDEYGEQEKVSDKNDYLKDFIDYDDDGSISTESEPEEE 2973
Query: 382 EEE----------EEEEEEEEEEEEEEKELENEGHCDFVKLR 413
+ E EEEE+++E+ E+E ELE +
Sbjct: 2974 KRECESGFDGWNDYEEEEDDDEKNEKECELEQNAEILIEDEK 3015
Score = 33.0 bits (75), Expect = 0.71
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 36/130 (27%)
Query: 325 NPTIDKNLYSFFDCKYFNGLEEEEEE------------------EEEEEEEEEEEEEEEE 366
+P+I + F +G + E E+ EEE+E+++E E+
Sbjct: 2883 DPSIPFMYFVFLFLCKQHGRDTELAGAFEDGTGMKYGTGNINVSEQIEEEDEKDDEYGEQ 2942
Query: 367 EEEEEE----------EEEEEEEEEEEEEEEEEEEE--------EEEEEEKELENEGHCD 408
E+ ++ +++ E E EEE+ E E EEEE+ + +NE C+
Sbjct: 2943 EKVSDKNDYLKDFIDYDDDGSISTESEPEEEKRECESGFDGWNDYEEEEDDDEKNEKECE 3002
Query: 409 FVKLREMLIR 418
+ E+LI
Sbjct: 3003 LEQNAEILIE 3012
Score = 32.3 bits (73), Expect = 1.1
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N E EE E+ + +EE E+ E E++ + + + + E +EE ++ E
Sbjct: 4070 NVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGEN 4129
Query: 402 ENEGHCDFVK 411
E G D V+
Sbjct: 4130 EELGEEDGVR 4139
Score = 31.9 bits (72), Expect = 1.5
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE + ++ E E + EEE ++ +EE + E+ E+ +E EE LE
Sbjct: 3860 LESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLET 3919
Query: 404 E 404
E
Sbjct: 3920 E 3920
Score = 30.0 bits (67), Expect = 5.3
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 14/73 (19%)
Query: 345 EEEEEEEEEEEEEEEEE--------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
EE+ + + +E E E E E + EEE ++ +EE + E+
Sbjct: 3843 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNS 3902
Query: 391 EEEEEEEEKELEN 403
E+ +E E+
Sbjct: 3903 LNEKLWDEPNEED 3915
Score = 30.0 bits (67), Expect = 5.9
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+ E E E+ E+++ EE EE+ + + +E E +ELE++
Sbjct: 3804 QEKSNSGELESGTGLGSGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESD 3863
Score = 29.6 bits (66), Expect = 7.1
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEE 391
K F +++ E E EEE+ E E + EEEE+++E+ E+E E E+ E E
Sbjct: 2953 KDFIDYDDDGSISTESEPEEEKRECESGFDGWNDYEEEEDDDEKNEKECELEQNAEILIE 3012
Query: 392 EEEEEEEKELENEG 405
+E+ E LE+ G
Sbjct: 3013 DEKIGSEGSLESGG 3026
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 45.5 bits (109), Expect = 6e-05
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE+ ++EE + + E E+ EEE E++E+E E++++E E++EEE EE EE+ +ELE
Sbjct: 87 LEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
Score = 38.6 bits (91), Expect = 0.011
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 344 LEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+E E E ++ E+ ++EE + + E E+ EEE E++E+E E++++E E++E+E
Sbjct: 73 FEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
Query: 401 LEN 403
LE
Sbjct: 133 LEE 135
Score = 38.2 bits (90), Expect = 0.012
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E E+E E E ++ E+ ++EE + + E E+ EEE E++E+E E++++ELE
Sbjct: 69 LRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128
Score = 36.7 bits (86), Expect = 0.039
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+E E E ++ E+ ++EE + + E E+ EEE E++E+E E++++E ++ E E
Sbjct: 74 EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
Score = 36.3 bits (85), Expect = 0.046
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEE 392
LEE ++E E ++E E +EE + E E+E E E EE + + E
Sbjct: 44 LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103
Query: 393 EEEEEEKELENEGHCDFVKLREMLIR-TNMEDMREKTHCRHYELYRKKRLEEESN 446
E+ E+ELE + K +E+ + +E++ E+ + + LE S
Sbjct: 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEE---------QLQELERISG 149
Score = 32.8 bits (76), Expect = 0.65
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 18/80 (22%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EE------EEEEEEEEE 386
+ E+E E++++E E++EEE EE EE+ +E E EE E+ EEE
Sbjct: 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARH 169
Query: 387 E------EEEEEEEEEEEKE 400
E E EEE +EE +K+
Sbjct: 170 EAAVLIKEIEEEAKEEADKK 189
Score = 32.8 bits (76), Expect = 0.66
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
+E EEE + EE ++E E ++E E +EE + E E+E E E ++LE
Sbjct: 34 KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR--- 90
Query: 408 DFVKLREMLIRTNMEDMREK 427
+ +E + +E + ++
Sbjct: 91 --LLQKEENLDRKLELLEKR 108
Score = 30.1 bits (69), Expect = 4.5
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 344 LEEEEEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++E EEE + EE ++E E ++E E +EE + E E+E E E ++ E++ L
Sbjct: 33 IKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLL 92
Query: 402 ENE 404
+ E
Sbjct: 93 QKE 95
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 45.5 bits (108), Expect = 7e-05
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LEE+ E ++E EE + EE++E+EE+E+ + + E + +EE+EEE++E L
Sbjct: 406 EPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTIL 465
Query: 402 ENE 404
E E
Sbjct: 466 EEE 468
Score = 45.5 bits (108), Expect = 8e-05
Identities = 20/64 (31%), Positives = 41/64 (64%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L++E EE+ E ++E EE + EE++E+EE+E+ + + E + +EE+EEE+++ +
Sbjct: 401 RSLQKEPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAI 460
Query: 402 ENEG 405
+
Sbjct: 461 PSTI 464
Score = 40.9 bits (96), Expect = 0.002
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E EE + EE++E+EE+E+ + + E + +EE+EEE++E EE+
Sbjct: 414 NKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEPTVGG 473
Query: 405 G 405
G
Sbjct: 474 G 474
Score = 35.5 bits (82), Expect = 0.10
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ + EE++E+EE+E+ + + E + +EE+EEE++E EEE
Sbjct: 420 EEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEP 469
Score = 31.7 bits (72), Expect = 1.4
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ EE E+EEE E + +E E +E EE+ E ++E EE + EE++E+
Sbjct: 372 IAEERSEDEEEAAENNDNGIVIDETSEFVRSLQKEPLEEKPENKDESVEEISDAEEDDED 431
Query: 398 EKELENEGHCD 408
E++ + +G +
Sbjct: 432 EEDEDGDGDVE 442
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 43.9 bits (104), Expect = 8e-05
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EEE+ E E E E E EEE E+K
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
Score = 42.7 bits (101), Expect = 2e-04
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+EEE+ E E E E E EEE E+
Sbjct: 114 MEEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 42.7 bits (101), Expect = 2e-04
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
L EEE+ E E E E E EEE E+
Sbjct: 113 LMEEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.9 bits (99), Expect = 3e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.2 bits (97), Expect = 8e-04
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EEE+ E E E E E EEE ++
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 39.2 bits (92), Expect = 0.003
Identities = 11/43 (25%), Positives = 14/43 (32%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEE+ E E E E E EE+ + G
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSG 157
Score = 38.9 bits (91), Expect = 0.004
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 31/85 (36%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEE-------------------------------EEE 373
E E E E E EEE E+ +E+
Sbjct: 129 VCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEK 188
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEE 398
+++ +E + +E+EEE++E
Sbjct: 189 GAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 38.5 bits (90), Expect = 0.005
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 31/87 (35%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEE-------------------------------E 373
E E E E E EEE E+ +
Sbjct: 127 CPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQ 186
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+ +++ +E + +E+EEE++E
Sbjct: 187 EKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 35.4 bits (82), Expect = 0.048
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 31/80 (38%)
Query: 344 LEEEEEEEEEEEEEEEEEEEE-------------------------------EEEEEEEE 372
+ E E E E E EEE E+ +E+ ++
Sbjct: 134 MTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEKGAPDD 193
Query: 373 EEEEEEEEEEEEEEEEEEEE 392
+ +E + +E+EEE++E
Sbjct: 194 DLDEYDYGDEDEEEDDEPPW 213
Score = 30.8 bits (70), Expect = 1.8
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E E + E + E E EEE L EG
Sbjct: 26 EPEPEVPQTEATDPSEVVVETVTEEEGGPLTPEG 59
Score = 30.4 bits (69), Expect = 2.1
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
YF + +++E+ +++ +E + +E+EEE++E
Sbjct: 177 YFKFYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 30.0 bits (68), Expect = 3.1
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 32/75 (42%)
Query: 343 GLEEEEEEEEEEEEEE--------------------------------EEEEEEEEEEEE 370
G E E E E EEE E+ E+ +++ +E
Sbjct: 139 GPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEKGAPDDDLDEY 198
Query: 371 EEEEEEEEEEEEEEE 385
+ +E+EEE++E
Sbjct: 199 DYGDEDEEEDDEPPW 213
Score = 28.8 bits (65), Expect = 7.4
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEE 372
+ G E E E + E + E E EEE
Sbjct: 21 FAYGGEPEPEVPQTEATDPSEVVVETVTEEEGG 53
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 45.6 bits (109), Expect = 8e-05
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+EEEE +EE + E EEE + E EE E EEE + E EE E +
Sbjct: 38 VEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEA 94
Score = 43.7 bits (104), Expect = 3e-04
Identities = 22/57 (38%), Positives = 26/57 (45%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEEE +EE + E EEE + E EE E EEE + E EE E E
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAA 95
Score = 43.3 bits (103), Expect = 4e-04
Identities = 21/56 (37%), Positives = 25/56 (44%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EEE +EE + E EEE + E EE E EEE + E EE E E
Sbjct: 40 EEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAA 95
Score = 43.3 bits (103), Expect = 4e-04
Identities = 22/57 (38%), Positives = 26/57 (45%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EEEE +EE + E EEE + E EE E EEE + E EE E E
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAA 95
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 44.6 bits (106), Expect = 1e-04
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EEEEE+ + EEE +EE +E++EE+++EE E + + EE+ + EE+E +K+
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320
Score = 44.2 bits (105), Expect = 1e-04
Identities = 22/54 (40%), Positives = 37/54 (68%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEEEE+ + EEE +EE +E++EE+++EE E + + EE+ + EEKE + +
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQ 319
Score = 43.0 bits (102), Expect = 3e-04
Identities = 20/55 (36%), Positives = 38/55 (69%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EEEE+ + EEE +EE +E++EE+++EE E + + EE+ + EE+E +++ +
Sbjct: 267 EEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
Score = 41.1 bits (97), Expect = 0.001
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EEE+ + EEE +EE +E++EE+++EE E + + EE+ + EE+E +++ K
Sbjct: 268 EEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 36.5 bits (85), Expect = 0.037
Identities = 16/49 (32%), Positives = 33/49 (67%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ + EEE +EE +E++EE+++EE E + + EE+ + EE+E +++
Sbjct: 272 ILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320
Score = 32.6 bits (75), Expect = 0.55
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEEEE+ + EEE +EE +E++EE+++EE+E +
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 374
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 375
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 40.7 bits (96), Expect = 2e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE++EEEEEEEE+EE EE+
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 37.6 bits (88), Expect = 0.002
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 376 EEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE++EEEEEEEE+EE +E G
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAAG 100
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 43.3 bits (102), Expect = 1e-04
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ G E EE + + +E++E EE E+E EE E+E++ E+ EE+E+++E EE +EE +E
Sbjct: 139 YLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEE 198
Query: 401 LENE 404
L E
Sbjct: 199 LLEE 202
Score = 41.8 bits (98), Expect = 4e-04
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 329 DKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+ L E + + +E++E EE E+E EE E+E++ E+ EE+E+++E E
Sbjct: 131 KEILPLLLYLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELE 190
Query: 389 EEEEEEEEEEKELE 402
E +EE EE +ELE
Sbjct: 191 ELKEELEELLEELE 204
Score = 40.6 bits (95), Expect = 0.001
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ + Y EE + + +E++E EE E+E EE E+E++ E+ EE+E++
Sbjct: 127 LKSDKEILPLLLYLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKK 186
Query: 388 EEEEEEEEEEEKELEN 403
+E EE +EE E+ LE
Sbjct: 187 KELEELKEELEELLEE 202
Score = 39.5 bits (92), Expect = 0.002
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
L + + L+ + +E++E EE E+E EE E+E++ E+ EE+E+++E EE
Sbjct: 132 EILPLLLYLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEE 191
Query: 388 EEEEEEEEEEEKE 400
+EE EE EE E
Sbjct: 192 LKEELEELLEELE 204
Score = 36.4 bits (84), Expect = 0.022
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 326 PTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
F + LEE E+E EE E+E++ E+ EE+E+++E EE +EE EE
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
Query: 386 EEEE 389
EE E
Sbjct: 201 EELE 204
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel, four-helix
bundle structure with a large hydrophobic patch in which
23 residues of one monomer form van der Waals contacts
with the other monomer. This CENP-B dimer configuration
may be suitable for capturing two distant CENP-B boxes
during centromeric heterochromatin formation.
Length = 101
Score = 41.3 bits (96), Expect = 1e-04
Identities = 20/72 (27%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNME 422
E EE+ + + +EEE++++E+EE+++E+++E+++E E F ++ L ++
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEVPVPSFGEAMAYFAMVKRYLTSFPID 66
Query: 423 DMREKTHCRHYE 434
D R ++H H E
Sbjct: 67 D-RVQSHILHLE 77
Score = 39.8 bits (92), Expect = 4e-04
Identities = 13/35 (37%), Positives = 31/35 (88%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
LE EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 6 LEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.001
Identities = 12/34 (35%), Positives = 30/34 (88%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E EE+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.2 bits (88), Expect = 0.002
Identities = 11/36 (30%), Positives = 30/36 (83%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 375
+ G E+ + + +EEE++++E+EE+++E+++E+++E
Sbjct: 5 FLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 43.9 bits (104), Expect = 1e-04
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEE 393
LE +E+ E +EE ++ E + EE+ + E EEEEEE EEE
Sbjct: 114 LENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEE 173
Query: 394 EEEEEKE 400
EE +E E
Sbjct: 174 EEVKEPE 180
Score = 41.2 bits (97), Expect = 8e-04
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEEEEE 393
L +E+ E +EE ++ E + EE+ + E EEEEEE EEEEE
Sbjct: 117 LNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEV 176
Query: 394 EEEEE 398
+E E+
Sbjct: 177 KEPED 181
Score = 38.9 bits (91), Expect = 0.004
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEKELEN 403
E +E+ E +EE ++ E + EE++ E + E EEEEEE E E
Sbjct: 115 ENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEE 174
Query: 404 E 404
E
Sbjct: 175 E 175
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 45.0 bits (107), Expect = 1e-04
Identities = 31/78 (39%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E+ EE + +E E E E EE EE EE EEE E E E EE E + ++L+ E
Sbjct: 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
Query: 405 GHCDFVKLREMLIRTNME 422
LRE L E
Sbjct: 798 ----LKALREALDELRAE 811
Score = 42.4 bits (100), Expect = 8e-04
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E + EE E + EE E + +E EE E EE+ EE +EE E E E EE E E +ELE+
Sbjct: 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
Score = 42.4 bits (100), Expect = 9e-04
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE+ E ++E EE ++ EE E +E + E EE EEE EE +EE E EE EE +E
Sbjct: 410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
Query: 402 ENEGHCDFVKLREMLIRTN-----MEDMREK 427
E L + +E ++E
Sbjct: 470 LEEAEQALDAAERELAQLQARLDSLERLQEN 500
Score = 42.4 bits (100), Expect = 0.001
Identities = 22/60 (36%), Positives = 27/60 (45%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ E E E+ EE + +E E E E EE EE EE EEE E E E E
Sbjct: 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
Score = 41.6 bits (98), Expect = 0.001
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E + +E EE E EE+ EE +EE E E E EE E E EE E EE E++LE
Sbjct: 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
Score = 41.6 bits (98), Expect = 0.002
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + EE E + +E EE E EE+ EE +EE E E E EE E E EE E +ELE +
Sbjct: 322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
Score = 40.8 bits (96), Expect = 0.003
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE E EE+ EE +EE E E E EE E E EE E EE EE+ E + +LE +
Sbjct: 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
Query: 406 HCDFVKLREMLIRTNM-EDMREKTHCRHYELYRKK 439
++ + R ED RE+ EL +K
Sbjct: 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
Score = 40.4 bits (95), Expect = 0.003
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LEE E + EE E + +E EE E EE+ EE +EE E E E EE E E EE E + E
Sbjct: 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
Score = 40.0 bits (94), Expect = 0.004
Identities = 30/58 (51%), Positives = 35/58 (60%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE EE EE +EE +E EEE EE E +E EE+ EE E E EEE EE +KEL
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
Score = 40.0 bits (94), Expect = 0.004
Identities = 26/59 (44%), Positives = 32/59 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E + EE E + EE E + +E EE E EE+ EE +EE E E E EE E ELE
Sbjct: 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
Score = 40.0 bits (94), Expect = 0.005
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE E + EE E + +E EE E EE+ EE +EE E E E EE E E EE + E
Sbjct: 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
Score = 39.7 bits (93), Expect = 0.005
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ ++ E E E+ EE + +E E E E EE EE EE EEE E E E
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
Score = 39.7 bits (93), Expect = 0.005
Identities = 23/60 (38%), Positives = 27/60 (45%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ E E EE EE EE E E E E EE E EE EE +ELE++
Sbjct: 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909
Score = 39.3 bits (92), Expect = 0.007
Identities = 27/61 (44%), Positives = 32/61 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E E EE EE EE EEE E E E EE E + E+ +EE + E +E E L N
Sbjct: 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
Query: 404 E 404
E
Sbjct: 817 E 817
Score = 39.3 bits (92), Expect = 0.007
Identities = 30/106 (28%), Positives = 41/106 (38%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ N E E E E E+ EE+ EE E+ E E EE EE EE E E E
Sbjct: 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
Query: 399 KELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E + + L + E++RE R + L E+
Sbjct: 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
Score = 39.3 bits (92), Expect = 0.008
Identities = 22/63 (34%), Positives = 29/63 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE + ++ E E E+ EE + +E E E E EE EE EE EE+ E
Sbjct: 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
Query: 404 EGH 406
E
Sbjct: 781 EAE 783
Score = 38.9 bits (91), Expect = 0.010
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E + EE E + EE E + +E EE E EE+ EE +EE E E E +ELE E
Sbjct: 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
Score = 38.9 bits (91), Expect = 0.011
Identities = 25/53 (47%), Positives = 30/53 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
LEE + +E E E E EE EE EE EEE E E E EE E + E+ +EE
Sbjct: 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
Score = 38.5 bits (90), Expect = 0.014
Identities = 25/56 (44%), Positives = 31/56 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E EE E EE+ EE +EE E E E EE E E EE E EE EE+ E ++
Sbjct: 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
Score = 38.1 bits (89), Expect = 0.019
Identities = 26/60 (43%), Positives = 32/60 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E + EE E + EE E + +E EE E EE+ EE +EE E E E EE E E E
Sbjct: 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
Score = 37.7 bits (88), Expect = 0.022
Identities = 27/57 (47%), Positives = 32/57 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E + +E EE E EE+ EE +EE E E E EE E E EE E EE EE+ E
Sbjct: 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
Score = 37.7 bits (88), Expect = 0.022
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE + ++ E E E+ EE + +E E E E EE EE EE E+EL
Sbjct: 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
Score = 37.3 bits (87), Expect = 0.030
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + +E EE E EE+ EE +EE E E E EE E E EE E EE EE+ + L ++
Sbjct: 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
Score = 37.3 bits (87), Expect = 0.032
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE EEE EE +EE E EE EE EE EE E+ + E E + + + E +
Sbjct: 442 LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
Query: 404 EGHCDFVK 411
EG + VK
Sbjct: 502 EGFSEGVK 509
Score = 37.3 bits (87), Expect = 0.032
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 342 NGLEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ LE++++ E E + EE E + EE E + +E EE E EE+ EE +EE E E
Sbjct: 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
Query: 399 KELENE 404
ELE
Sbjct: 358 AELEEL 363
Score = 37.0 bits (86), Expect = 0.034
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
LEE EE EE +EE +E EEE EE E +E EE+ EE E E EEE EE +++
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE 289
Score = 37.0 bits (86), Expect = 0.035
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + EE E + EE E + +E EE E EE+ EE +EE E E E EE + E
Sbjct: 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
Score = 36.6 bits (85), Expect = 0.047
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E++++ E E + EE E + EE E + +E EE E EE+ EE +EE E
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
Query: 407 CDFVKLREML 416
+ E L
Sbjct: 361 EELEAELEEL 370
Score = 36.6 bits (85), Expect = 0.048
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE + ++ E E E+ EE + +E E E E EE EE EE +E E
Sbjct: 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
Query: 405 GHCDFVKLRE 414
+ +L
Sbjct: 780 AEAEIEELEA 789
Score = 36.2 bits (84), Expect = 0.060
Identities = 29/59 (49%), Positives = 35/59 (59%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EE +EE +E EEE EE E +E EE+ EE E E EEE EE ++E L NE
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
Score = 36.2 bits (84), Expect = 0.060
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L +E EE + ++ E E E+ EE + +E E E E EE EE E+ E
Sbjct: 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
Score = 35.8 bits (83), Expect = 0.087
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEKELE 402
E+ EE +EE E E E EE E E EE E EE EE+ E + + E + E+E
Sbjct: 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
Query: 403 N 403
Sbjct: 404 R 404
Score = 35.8 bits (83), Expect = 0.088
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
L EE EE +EE +E EEE EE E +E EE+ EE E E EEE EE ++E
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE 289
Score = 35.4 bits (82), Expect = 0.11
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE+ +E EE + ++ E E E+ EE + +E E E E EE EE+
Sbjct: 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
Query: 402 ENEGH 406
E E
Sbjct: 772 EAEEE 776
Score = 34.6 bits (80), Expect = 0.17
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E E + EE E + EE E + +E EE E EE+ EE +EE E E + E
Sbjct: 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363
Query: 404 EGHCDFVKLREMLIRTNMEDMREK 427
E + ++ R + +E +R K
Sbjct: 364 EAELEELESRLEELEEQLETLRSK 387
Score = 34.6 bits (80), Expect = 0.18
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
L+EE E E E EE E E EE E EE EE+ E + + E + E
Sbjct: 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
Score = 34.3 bits (79), Expect = 0.24
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E+ E ++E EE ++ EE E +E + E EE EEE EE +EE E E+ LE
Sbjct: 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE 465
Score = 33.9 bits (78), Expect = 0.31
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E EE EEE E+ +E EE + ++ E E E+ EE + +E ELE E
Sbjct: 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
Score = 33.9 bits (78), Expect = 0.36
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEE E+ +E EE + ++ E E E+ EE + +E E E E +ELE
Sbjct: 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
Query: 406 HCDFVKLRE 414
+L E
Sbjct: 771 EEAEEELAE 779
Score = 33.9 bits (78), Expect = 0.36
Identities = 22/61 (36%), Positives = 28/61 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE +EE E E E EE E E EE E EE EE+ E + + E + +
Sbjct: 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
Query: 404 E 404
E
Sbjct: 406 E 406
Score = 33.5 bits (77), Expect = 0.43
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EE +E EEE EE E +E EE+ EE E E EEE EE ++E E LE +
Sbjct: 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303
Score = 33.5 bits (77), Expect = 0.47
Identities = 25/48 (52%), Positives = 29/48 (60%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EE EE +EE +E EEE EE E +E EE+ EE E ELE E
Sbjct: 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
Score = 33.1 bits (76), Expect = 0.54
Identities = 22/55 (40%), Positives = 27/55 (49%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
LEE EE EEE E E E EE E + E+ +EE + E +E E EE
Sbjct: 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
Score = 32.7 bits (75), Expect = 0.66
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E+ + E E E + +E EE EE E E + E++EEE K LEN
Sbjct: 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
Query: 404 E 404
+
Sbjct: 980 K 980
Score = 32.7 bits (75), Expect = 0.83
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+EE EE EE E E E E EE E EE EE E E + E E EE
Sbjct: 861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
Query: 399 KELENEGHCDFVKLREMLIRTNMEDMREK 427
+E + L E+ I E + E+
Sbjct: 921 REKLAQLELRLEGL-EVRIDNLQERLSEE 948
Score = 32.3 bits (74), Expect = 0.93
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L E E++++ E E + EE E + EE E + +E EE E EE+ E E
Sbjct: 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE-E 348
Query: 401 LENEGHCDFVKLREMLIRTNME 422
L+ E L L E
Sbjct: 349 LKEE----LESLEAELEELEAE 366
Score = 32.3 bits (74), Expect = 0.96
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE E+ +E EE + ++ E E E+ EE + +E E E E EE E
Sbjct: 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
Query: 402 ENE 404
E
Sbjct: 769 RLE 771
Score = 32.3 bits (74), Expect = 0.98
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LEE+ E E+ E +E EE EEE E+ +E EE + ++ E E E+ E
Sbjct: 689 LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
Score = 32.0 bits (73), Expect = 1.4
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+ EE EE+ E E+ E +E EE EEE E+ +E EE + ++ LE E
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
Score = 31.6 bits (72), Expect = 1.6
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE+ EE EE+ E E+ E +E EE EEE E+ +E EE + ++ +
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELY-RKKRLEEES 445
+ + T +E E+ R E E E
Sbjct: 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
Score = 31.6 bits (72), Expect = 1.7
Identities = 24/58 (41%), Positives = 30/58 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE +E EEE EE E +E EE+ EE E E EEE EE ++E E E +
Sbjct: 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303
Score = 31.6 bits (72), Expect = 1.8
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L +E EE EEE E+ +E EE + ++ E E E+ EE + +E E +
Sbjct: 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
Query: 400 ELENEGHCDFVKLREMLIRT 419
E + E L
Sbjct: 761 AEIEELEERLEEAEEELAEA 780
Score = 31.6 bits (72), Expect = 1.9
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EE+ EE EE+ E E+ E +E EE EEE E+ +E EE + K+L
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
Score = 31.2 bits (71), Expect = 2.4
Identities = 20/58 (34%), Positives = 25/58 (43%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E EE E E EE E EE EE+ E + + E + E E E + LE
Sbjct: 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
Score = 30.4 bits (69), Expect = 3.5
Identities = 17/60 (28%), Positives = 22/60 (36%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E E EE E E E E E+ EE+ EE E+ E E+E
Sbjct: 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE 865
Score = 30.4 bits (69), Expect = 3.6
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 341 FNGLEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
LE + E E E E+ E ++E EE ++ EE E +E + E EE EE
Sbjct: 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
Query: 397 EEKELENE 404
E +EL+ E
Sbjct: 448 ELEELQEE 455
Score = 29.3 bits (66), Expect = 9.2
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE EE+ EE EE+ E E+ E +E EE EEE E+ +E EE + L +
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 45.0 bits (107), Expect = 1e-04
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEKE 400
E ++EE + E EE E E EEE +EEE EE ++ E E+E E ++ +KE
Sbjct: 383 EARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKE 442
Query: 401 LENEGHCDFVKLREMLIRTNMEDMREKT 428
+NE E + E EK
Sbjct: 443 NKNEFKEKKESDEEEELEDEEEAKVEKV 470
Score = 45.0 bits (107), Expect = 1e-04
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 39/103 (37%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEE----------------------------------- 366
G EE+E+E+ + EEE+E+++E
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKF 378
Query: 367 ----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E ++EE + E EE E E EEE +EEE EE +N G
Sbjct: 379 MQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVG 421
Score = 41.6 bits (98), Expect = 0.001
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------EEEEEEEEEKEL 401
+ E ++EE + E EE E E EEE +EEE EE ++ E E+E E K+L
Sbjct: 380 QRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKL 439
Query: 402 ENEGHCDFVK 411
+ E +F +
Sbjct: 440 KKENKNEFKE 449
Score = 41.6 bits (98), Expect = 0.001
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
L++E + E +E++E +EEEE E+EEE + E+ + + E+ ++EEEEEE +EE
Sbjct: 436 SKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEE 493
Score = 40.8 bits (96), Expect = 0.002
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 344 LEEEEEEEEEEEEEE---------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
L + +E E++EE E ++EE + E EE E E EEE +EEE EE +
Sbjct: 358 LGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSK 417
Query: 395 EEEEK 399
+ +
Sbjct: 418 KNVGR 422
Score = 40.8 bits (96), Expect = 0.003
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E + E +E++E +EEEE E+EEE + E+ + + E+ ++EEEEEE +EE L
Sbjct: 440 KKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWL 497
Score = 40.4 bits (95), Expect = 0.003
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++ ++E + E +E++E +EEEE E+EEE + E+ + + E+ ++EEEEEE +
Sbjct: 432 KEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELD 491
Query: 401 LEN 403
EN
Sbjct: 492 EEN 494
Score = 39.7 bits (93), Expect = 0.004
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 341 FNGLEEEEEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
G EE +EEE EE ++ E E+E E ++ ++E + E +E++E +EEEE E
Sbjct: 401 LEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELE 460
Query: 395 EEEEKELENE 404
+EEE ++E
Sbjct: 461 DEEEAKVEKV 470
Score = 39.7 bits (93), Expect = 0.005
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +E++E +EEEE E+EEE + E+ + + E+ ++EEEEEE +EE +
Sbjct: 445 NEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVG 504
Score = 38.9 bits (91), Expect = 0.009
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ E +E++E +EEEE E+EEE + E+ + + E+ ++EEEEEE +EE K
Sbjct: 444 KNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLK 498
Score = 38.5 bits (90), Expect = 0.012
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 22/85 (25%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEEEEEE------ 386
+E + EE+E+E+ + EEE+E+++E++++ + +E E++EE
Sbjct: 318 IEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMK 377
Query: 387 -----EEEEEEEEEEEEKELENEGH 406
E ++EE + E +EL E
Sbjct: 378 FMQRAEARKKEENDAEIEELRRELE 402
Score = 38.5 bits (90), Expect = 0.013
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E +E++E +EEEE E+EEE + E+ + + E+ ++EEEEEE +EE + +
Sbjct: 443 NKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSS 502
Score = 36.6 bits (85), Expect = 0.048
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEE 397
F E+E E ++ ++E + E +E++E +EEEE E+EEE + E+ + E+ ++E
Sbjct: 425 FGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKE 484
Query: 398 EKELENE 404
E+E E +
Sbjct: 485 EEEEELD 491
Score = 36.6 bits (85), Expect = 0.051
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E++E +EEEE E+EEE + E+ + + E+ ++EEEEEE +EE + ++
Sbjct: 448 KEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSA 507
Query: 405 G 405
Sbjct: 508 K 508
Score = 35.8 bits (83), Expect = 0.075
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E++E +EEEE E+EEE + E+ + + E+ ++EEEEEE +EE
Sbjct: 443 NKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEEN 494
Score = 34.6 bits (80), Expect = 0.19
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREM 415
E + EE+E+E+ + EEE+E+++E++++ E ++ K E E + L M
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSM 376
Score = 33.5 bits (77), Expect = 0.36
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EEEE E+EEE + E+ + + E+ ++EEEEEE +EE + + K+ +++
Sbjct: 454 DEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSK 513
Score = 33.5 bits (77), Expect = 0.36
Identities = 17/61 (27%), Positives = 37/61 (60%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LEE+ + EE + E + EE+E+E+ + EEE+E+++E++++ E ++ +L+
Sbjct: 303 ALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLK 362
Query: 403 N 403
Sbjct: 363 E 363
Score = 31.6 bits (72), Expect = 1.5
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 320 KVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
+ + + K + F K + EEE E+EEE + E+ + + E+ ++EEEEEE
Sbjct: 431 EKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEEL 490
Query: 380 EEEE 383
+EE
Sbjct: 491 DEEN 494
Score = 31.6 bits (72), Expect = 1.5
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE + EE+ + EE + E + EE+E+E+ + EEE+E+++E++++ E
Sbjct: 298 EEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENP 351
Score = 30.8 bits (70), Expect = 2.4
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + EE+ + EE + E + EE+E+E+ + EEE+E+++E + + E
Sbjct: 298 EEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGE 349
Score = 30.8 bits (70), Expect = 2.6
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + EE+ + EE + E + EE+E+E+ + EEE+E+++E++ + EN
Sbjct: 298 EEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENP 351
Score = 30.8 bits (70), Expect = 2.8
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE + EE+ + EE + E + EE+E+E+ + EEE+E+++E++++ E L
Sbjct: 298 EEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWML 354
Score = 30.8 bits (70), Expect = 2.8
Identities = 18/58 (31%), Positives = 37/58 (63%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
G + +EE + EE+ + EE + E + EE+E+E+ + EEE+E+++E++++ E
Sbjct: 292 GRAKYDEEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGE 349
Score = 29.3 bits (66), Expect = 7.3
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
LE+EEE + E+ + + E+ ++EEEEEE +EE + + ++++ +K+
Sbjct: 456 EEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKK 515
Query: 401 LEN 403
+
Sbjct: 516 SSS 518
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 44.0 bits (105), Expect = 1e-04
Identities = 23/35 (65%), Positives = 24/35 (68%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
G + E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 224 GRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 42.1 bits (100), Expect = 4e-04
Identities = 24/37 (64%), Positives = 25/37 (67%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
LE + E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 222 LEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 41.3 bits (98), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 40.5 bits (96), Expect = 0.001
Identities = 22/34 (64%), Positives = 22/34 (64%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 375
E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 40.1 bits (95), Expect = 0.002
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 40.1 bits (95), Expect = 0.002
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ E EEEEEE EEEEEEEEEEE EE E +
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.0 bits (92), Expect = 0.004
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 36.7 bits (86), Expect = 0.028
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E EEEEEE EEEEEEEEEEE E+
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 36.7 bits (86), Expect = 0.028
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E EEEEEE EEEEEEEEEEE +E E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 44.4 bits (105), Expect = 1e-04
Identities = 14/57 (24%), Positives = 34/57 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++ E++ EE E++ E+ ++E E+ E+ ++ E+ ++ EE++++ EE K
Sbjct: 70 QKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKA 126
Score = 44.1 bits (104), Expect = 2e-04
Identities = 15/57 (26%), Positives = 36/57 (63%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+E +++ E++ EE E++ E+ ++E E+ E+ ++ E+ ++ EE++K+ E
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAE 122
Score = 43.3 bits (102), Expect = 3e-04
Identities = 14/58 (24%), Positives = 34/58 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E++ EE E++ E+ ++E E+ E+ ++ E+ ++ EE++++ EE + K+
Sbjct: 73 LEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAA 130
Score = 43.3 bits (102), Expect = 3e-04
Identities = 15/60 (25%), Positives = 36/60 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE++ EE E++ E+ ++E E+ E+ ++ E+ ++ EE++++ EE + ++ E
Sbjct: 73 LEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEA 132
Score = 41.7 bits (98), Expect = 0.001
Identities = 14/60 (23%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E++ EE E++ E+ ++E E+ E+ ++ E+ ++ EE++++ EE + + E
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
Score = 41.4 bits (97), Expect = 0.001
Identities = 14/59 (23%), Positives = 36/59 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+E +++ E++ EE E++ E+ ++E E+ E+ ++ E+ ++ EE++++ E
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEA 124
Score = 41.0 bits (96), Expect = 0.001
Identities = 13/59 (22%), Positives = 34/59 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++ E+ ++E E+ E+ ++ E+ ++ EE++++ EE + ++ E + + E E
Sbjct: 81 EKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAE 139
Score = 41.0 bits (96), Expect = 0.002
Identities = 15/57 (26%), Positives = 35/57 (61%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+E +++ E++ EE E++ E+ ++E E+ E+ ++ E+ ++ EEK+ + E
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAE 122
Score = 40.6 bits (95), Expect = 0.002
Identities = 13/57 (22%), Positives = 32/57 (56%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ ++E E+ E+ ++ E+ ++ EE++++ EE + ++ E + + E E E
Sbjct: 85 AAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAE 141
Score = 40.6 bits (95), Expect = 0.002
Identities = 14/58 (24%), Positives = 35/58 (60%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+E +++ E++ EE E++ E+ ++E E+ E+ ++ E+ ++ EE+++ E
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEE 123
Score = 39.8 bits (93), Expect = 0.003
Identities = 13/55 (23%), Positives = 32/55 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E++ E+ ++E E+ E+ ++ E+ ++ EE++++ EE + ++ E K
Sbjct: 79 EAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAK 133
Score = 39.4 bits (92), Expect = 0.004
Identities = 14/60 (23%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ ++E E+ E+ ++ E+ ++ EE++++ EE + ++ E + + E E EK+ + E
Sbjct: 88 QARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEE 147
Score = 39.4 bits (92), Expect = 0.004
Identities = 13/59 (22%), Positives = 35/59 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+++ ++E+E +++ E++ EE E++ E+ ++E E+ E+ ++ E+ K+ E
Sbjct: 57 QQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAE 115
Score = 39.4 bits (92), Expect = 0.004
Identities = 12/59 (20%), Positives = 34/59 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+++ ++E+E +++ E++ EE E++ E+ ++E E+ E+ ++ E+ + E
Sbjct: 58 QKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEE 116
Score = 39.4 bits (92), Expect = 0.004
Identities = 13/60 (21%), Positives = 34/60 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ E+ ++E E+ E+ ++ E+ ++ EE++++ EE + ++ E + + E E E
Sbjct: 82 KQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAE 141
Score = 39.4 bits (92), Expect = 0.004
Identities = 13/60 (21%), Positives = 34/60 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ ++E E+ E+ ++ E+ ++ EE++++ EE + ++ E + + E E ++ E
Sbjct: 87 EQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKE 146
Score = 39.0 bits (91), Expect = 0.005
Identities = 12/60 (20%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ ++E+E +++ E++ EE E++ E+ ++E E+ E+ ++ E+ ++ E +
Sbjct: 59 KKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQ 118
Score = 39.0 bits (91), Expect = 0.005
Identities = 15/60 (25%), Positives = 36/60 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+ ++ E+ ++ EE++++ EE + ++ E + + E E E++ +EE +K+ E E
Sbjct: 96 QRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEE 155
Score = 39.0 bits (91), Expect = 0.006
Identities = 14/58 (24%), Positives = 37/58 (63%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ ++ E+ ++ EE++++ EE + ++ E + + E E E++ +EE +++ EEE + +
Sbjct: 102 KAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAK 159
Score = 39.0 bits (91), Expect = 0.007
Identities = 15/56 (26%), Positives = 34/56 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
LE+ E+ ++ E+ ++ EE++++ EE + ++ E + + E E E++ +EE K
Sbjct: 94 LEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAK 149
Score = 38.7 bits (90), Expect = 0.007
Identities = 12/61 (19%), Positives = 34/61 (55%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ ++E+E +++ E++ EE E++ E+ ++E E+ E+ ++ E+ ++ E
Sbjct: 57 QQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEE 116
Query: 402 E 402
+
Sbjct: 117 K 117
Score = 37.9 bits (88), Expect = 0.013
Identities = 13/64 (20%), Positives = 38/64 (59%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N ++++++ ++E+E +++ E++ EE E++ E+ ++E E+ E+ ++ E+
Sbjct: 52 ANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAA 111
Query: 401 LENE 404
+ E
Sbjct: 112 KQAE 115
Score = 37.9 bits (88), Expect = 0.014
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 345 EEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE++++ EE + ++ E E E E++ +EE +++ EEE + + E +++ E +K+
Sbjct: 115 EEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKK 174
Query: 401 LENE 404
E E
Sbjct: 175 AEAE 178
Score = 37.5 bits (87), Expect = 0.016
Identities = 14/59 (23%), Positives = 36/59 (61%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ ++ E+ ++ EE++++ EE + ++ E + + E E E++ +EE +++ E E +
Sbjct: 99 AAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
Score = 37.5 bits (87), Expect = 0.018
Identities = 15/55 (27%), Positives = 35/55 (63%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E+ ++ EE++++ EE + ++ E + + E E E++ +EE +++ EEE + K
Sbjct: 106 QAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKA 160
Score = 37.5 bits (87), Expect = 0.019
Identities = 14/56 (25%), Positives = 34/56 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+ ++ EE++++ EE + ++ E + + E E E++ +EE +++ EEE + +
Sbjct: 107 AEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAA 162
Score = 37.1 bits (86), Expect = 0.025
Identities = 15/56 (26%), Positives = 36/56 (64%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++ EE++++ EE + ++ E + + E E E++ +EE +++ EEE + + E +K+
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKK 167
Score = 36.7 bits (85), Expect = 0.029
Identities = 16/59 (27%), Positives = 36/59 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ EE++++ EE + ++ E + + E E E++ +EE +++ EEE + + E ++K E
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAE 170
Score = 36.4 bits (84), Expect = 0.042
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E+ ++ EE++++ EE + ++ E E E E++ +EE +++ EEE + + E +
Sbjct: 106 QAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAK 165
Query: 401 LENE 404
+
Sbjct: 166 KKAA 169
Score = 35.6 bits (82), Expect = 0.079
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E E++ +EE +++ EEE + + E +++ E +++ E E + + E + K
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Score = 34.4 bits (79), Expect = 0.18
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E + + E E E++ +EE +++ EEE + + E +++ E +++ E E + + E +
Sbjct: 129 AAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAK 186
Score = 33.7 bits (77), Expect = 0.28
Identities = 12/58 (20%), Positives = 33/58 (56%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
G ++ +++++ ++E+E +++ E++ EE E++ E+ ++E E+ EK
Sbjct: 46 GAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKA 103
Score = 33.7 bits (77), Expect = 0.33
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E E++ +EE +++ EEE + + E +++ E +++ E E + + E + + + E
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAE 192
Score = 33.3 bits (76), Expect = 0.35
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E E++ +EE +++ EEE + + E +++ E +++ E E + + E + + K E
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEE 193
Score = 33.3 bits (76), Expect = 0.37
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ E + + E E E++ +EE +++ EEE + + E +++ E +++ E E + K
Sbjct: 128 QAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAE 184
Score = 32.9 bits (75), Expect = 0.48
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E++ +EE +++ EEE + + E +++ E +++ E E + + E + + + E
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAE 192
Score = 32.9 bits (75), Expect = 0.51
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EEE + + E +++ E +++ E E + + E + + + EE + + E + + E
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAE 208
Score = 32.5 bits (74), Expect = 0.76
Identities = 11/60 (18%), Positives = 34/60 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ +++++ ++E+E +++ E++ EE E++ E+ ++E E+ E+ + E
Sbjct: 49 AQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAE 108
Score = 32.1 bits (73), Expect = 0.81
Identities = 14/59 (23%), Positives = 34/59 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E + + E E E++ +EE +++ EEE + + E +++ E +++ E E + + E +
Sbjct: 128 QAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAK 186
Score = 31.3 bits (71), Expect = 1.6
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EEE + + E +++ E +++ E E + + E + + + EE + + E + + E
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAE 208
Score = 31.3 bits (71), Expect = 1.6
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+EE +++ EEE + + E +++ E +++ E E + + E + + + EE + K
Sbjct: 145 KEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAK 197
Score = 31.3 bits (71), Expect = 1.7
Identities = 13/59 (22%), Positives = 32/59 (54%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EE +++ EEE + + E +++ E +++ E E + + E + + + EE + + E
Sbjct: 145 KEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKA 203
Score = 31.0 bits (70), Expect = 2.2
Identities = 12/61 (19%), Positives = 32/61 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++ EEE + + E +++ E +++ E E + + E + + + EE + + E + +
Sbjct: 148 AKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAA 207
Query: 404 E 404
E
Sbjct: 208 E 208
Score = 30.2 bits (68), Expect = 3.3
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 344 LEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+EE +++ EEE + + E + E +++ E E + + E + + + EE + + E K
Sbjct: 144 AKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKA 203
Score = 29.0 bits (65), Expect = 7.2
Identities = 11/58 (18%), Positives = 28/58 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E +++ E +++ E E + + E + + + EE + + E + + E + E E
Sbjct: 159 KAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAE 216
Score = 28.6 bits (64), Expect = 9.8
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 346 EEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EEE + + E +++ E E E + + E + + + EE + + E + + E +
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAK 212
Query: 401 LENE 404
E E
Sbjct: 213 AEAE 216
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 43.5 bits (103), Expect = 1e-04
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Query: 336 FDCKYFNGLEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
D + L E + +E E+E E EE E+ E+E E+ +E E E+ E E
Sbjct: 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA 145
Query: 393 EEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVIG 449
EEE E+ EG K RE L EK Y + R ++ +
Sbjct: 146 RLEEEVAEIREEGQELSSK-REELK--------EKLDPELLSEYERIRKNKKGVGVV 193
Score = 32.0 bits (73), Expect = 0.86
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ +E E E+ E E EEE E EE +E + EE +E+ + E E E+ +N+
Sbjct: 128 DLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNK 187
Query: 405 GHCDFVKLR 413
V L
Sbjct: 188 KGVGVVPLE 196
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEE 369
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEE 370
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEE 371
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEE 372
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEE 373
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEE 374
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEE 375
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEE 376
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEE 377
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEE 378
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEE 379
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEE 380
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEE 381
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEE 382
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEE 383
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEE 384
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEE 385
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEE 386
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEE 387
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEE 388
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEE 389
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEE 390
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEE 391
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEE 392
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEE 393
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEE 394
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEE 395
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEE 396
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEEE 397
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEE 398
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.0 bits (94), Expect = 3e-04
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EEEEEEEEEEEEEEEE EE+ +
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEAMA 98
Score = 37.3 bits (87), Expect = 0.003
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 377 EEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEEEEEEEEEEEEEEE +E G
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEAMAG 99
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 44.1 bits (104), Expect = 1e-04
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
Y L + E + E E + E +E ++EEE +E EE E+E+++ + E E +EEK
Sbjct: 48 YKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEK 107
Query: 400 E-LENE 404
E LENE
Sbjct: 108 EQLENE 113
Score = 42.2 bits (99), Expect = 7e-04
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+E ++EEE +E EE E+E+++ + E E +EE+E+ E EE + E + L+
Sbjct: 72 LDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQL 131
Query: 404 EGHCDFVKLREMLIRTNMEDMRE 426
E + ++L+ ++ +R+
Sbjct: 132 EDNLQSLELQYEYSLNQLDKLRK 154
Score = 41.4 bits (97), Expect = 0.001
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEE 393
+Y + LE + E E + E +E ++EEE +E EE E+E+++ E +EE+E+
Sbjct: 50 QYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQ 109
Query: 394 EEEEEKELENE 404
E EE + E
Sbjct: 110 LENEELQYLRE 120
Score = 39.9 bits (93), Expect = 0.003
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E +E ++EEE +E EE E+E+++ + E E +EE+E+ E EE + E + N
Sbjct: 69 DSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNN 128
Score = 32.5 bits (74), Expect = 0.57
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E+E + ++ + E + E E + E +E ++EEE +E EE E+E+ +L+ E
Sbjct: 42 EKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGE-- 99
Query: 407 CDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESN 446
V+L+E + E E + R Y L+ + L+ E N
Sbjct: 100 --LVELQEEKEQLENE---ELQYLREYNLFDRNNLQLEDN 134
Score = 31.4 bits (71), Expect = 1.3
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L +E EE E+E+++ + E E +EE+E+ E EE + E + + E+ + L
Sbjct: 80 ERLLDELEELEKEDDDLDGELVELQEEKEQ-LENEELQYLREYNLFDRNNLQLEDNLQSL 138
Query: 402 ENE 404
E +
Sbjct: 139 ELQ 141
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 44.4 bits (105), Expect = 2e-04
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE E + E E+ E+ E EEE +E ++ EE +EE+EEEE E+E E EE ELE
Sbjct: 187 IEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEE 246
Query: 404 E 404
E
Sbjct: 247 E 247
Score = 43.6 bits (103), Expect = 3e-04
Identities = 32/62 (51%), Positives = 38/62 (61%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE EE EEE E+EE E EE EE E+E E EEE E E EE +EE EE+ ++LE
Sbjct: 480 ELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLE 539
Query: 403 NE 404
N
Sbjct: 540 NL 541
Score = 43.2 bits (102), Expect = 4e-04
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE E E EE EEE E EE EE E+ + EE E+ EE+ E+ E E EE E
Sbjct: 293 LEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEK 352
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
++ R + +E++ ++ L R K+LEE
Sbjct: 353 NELAKLLEERLKELEERLEELEKE---LEKALERLKQLEEA 390
Score = 43.2 bits (102), Expect = 4e-04
Identities = 29/58 (50%), Positives = 34/58 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EEE E+EE E EE EE E+E E EEE E E EE +EE EE+ E+ E LE
Sbjct: 487 EEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEE 544
Score = 43.2 bits (102), Expect = 5e-04
Identities = 31/71 (43%), Positives = 41/71 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEEE E+EE E EE EE E+E E EEE E E EE +EE EE+ E+ E E
Sbjct: 486 LEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEEL 545
Query: 404 EGHCDFVKLRE 414
E + ++L++
Sbjct: 546 EELKEKLQLQQ 556
Score = 43.2 bits (102), Expect = 5e-04
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E+ E EEE +E ++ EE +EE+EEEE E+E E EE E EEE+E EE + L
Sbjct: 200 DIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLL 259
Query: 403 NEGH 406
Sbjct: 260 EIES 263
Score = 42.8 bits (101), Expect = 6e-04
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ L E EEE E E EE +EE EE+ E+ E EE EE +E+ + ++ +EE +
Sbjct: 505 ELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQL 564
Query: 399 KELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVI 448
++ E + L+RT E++ E + K LEE + +
Sbjct: 565 EDRLQELK--ELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQL 612
Score = 42.8 bits (101), Expect = 6e-04
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E EE E+E E E E EE EEE E+EE E EE EE E+E E EEE E
Sbjct: 464 GQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLEL 523
Query: 403 NEGHCDFVKLREMLIRTNME---DMREKTHCRHYELYRKKRLEEESN 446
E + + +E ++ E+ +L ++ EE
Sbjct: 524 EE-------ALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQ 563
Score = 42.8 bits (101), Expect = 6e-04
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L E E+ E+ E EEE +E ++ EE +EE+EEEE E+E E EE E EEE++ LE
Sbjct: 194 LSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLE 252
Score = 42.4 bits (100), Expect = 8e-04
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
++K L + EE +EE EE+ E+ E EE EE +E+ + ++ +EE + E
Sbjct: 506 LEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLE 565
Query: 388 EEEEEEEEEEEKELENE 404
+ +E +E E+
Sbjct: 566 DRLQELKELLEELRLLR 582
Score = 41.7 bits (98), Expect = 0.001
Identities = 19/79 (24%), Positives = 37/79 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EE +E+ + ++ +EE + E+ +E +E EE +EE EE E+ E +
Sbjct: 540 NLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELK 599
Query: 405 GHCDFVKLREMLIRTNMED 423
++ R + ++
Sbjct: 600 KKLKELEERLSQLEELLQS 618
Score = 41.7 bits (98), Expect = 0.001
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE+ E EE E E EE EEE E EE EE E+ + EE E+ EE+ ++LE+E
Sbjct: 287 EEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELE 346
Query: 407 CDFVKLREMLIRTNMEDMREKTHCRHYELYRKKR 440
+ + + L + + + R K E K+
Sbjct: 347 -ELAEEKNELAK--LLEERLKELEERLEELEKEL 377
Score = 40.9 bits (96), Expect = 0.002
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++E + + EE E + E E+ E+ E EEE +E ++ EE +EE+EEEE E+E + LE
Sbjct: 180 IKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEE 239
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVI 448
+L E R R EL K EEE +
Sbjct: 240 R----LAELEEEKERLEELKARLL-EIESLELEALKIREEELREL 279
Score = 40.5 bits (95), Expect = 0.003
Identities = 27/75 (36%), Positives = 37/75 (49%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE ++ EE +E +EE E EE +EE EE E+E EE E E EE EEE ++ E
Sbjct: 379 KALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEE 438
Query: 402 ENEGHCDFVKLREML 416
+ + L
Sbjct: 439 QINQLESKELMIAEL 453
Score = 39.7 bits (93), Expect = 0.005
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-EEEEKEL 401
L++ +EE + E+ +E +E EE +EE EE E +E +++ +E EE +L
Sbjct: 553 QLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQL 612
Query: 402 ENE 404
E
Sbjct: 613 EEL 615
Score = 39.7 bits (93), Expect = 0.005
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L +EE EE E +E +++ +E EE + EE + E E E E EE E+ELE+
Sbjct: 578 LRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELES 637
Query: 404 E 404
E
Sbjct: 638 E 638
Score = 39.0 bits (91), Expect = 0.008
Identities = 26/60 (43%), Positives = 32/60 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E EE EE+ E EE E E EE EEE E EE EE E+ + EE ++LE +
Sbjct: 278 ELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEK 337
Score = 39.0 bits (91), Expect = 0.009
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ +E ++ EE +EE+EEEE E+E E EE E EEE+E EE + E E
Sbjct: 204 LLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIES 263
Query: 397 EEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E E + +L +L E+ E+ E+ + E
Sbjct: 264 LELEALKIREEELRELERLLEEL--EEKIERLEELEREIEELEEELEG 309
Score = 38.6 bits (90), Expect = 0.010
Identities = 28/84 (33%), Positives = 40/84 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E EE EEE E E E+ + E EE + EE EE+ EE E E E + E E + E
Sbjct: 625 ENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLE 684
Query: 405 GHCDFVKLREMLIRTNMEDMREKT 428
+ ++ E + E++ E
Sbjct: 685 EKLEELEQLEEELEQLREELEELL 708
Score = 38.6 bits (90), Expect = 0.013
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L + E EE + EE EE+ EE E E E + E EE+ EE+ EE E+ EEE E
Sbjct: 640 EKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELE 698
Score = 38.2 bits (89), Expect = 0.013
Identities = 28/58 (48%), Positives = 30/58 (51%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE E E EE EE+ E EE E E EE EEE E EE EE E+ K LE
Sbjct: 273 EEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEER 330
Score = 38.2 bits (89), Expect = 0.016
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ N LEE EEE E E E+ + E EE + EE EE+ EE E E E + E EE+
Sbjct: 623 EAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQ 682
Query: 399 KELENEGHCDFVKLREMLIRTNMEDMREK 427
E + E + E L R +E++ +K
Sbjct: 683 LEEKLEELEQLEEELEQL-REELEELLKK 710
Score = 37.8 bits (88), Expect = 0.019
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------EEEEEEEEE 393
LEE EE+ EE E E E + E EE+ EE+ EE E+ EEE EE ++ E
Sbjct: 654 AALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGE 713
Query: 394 EEEEEKELENE 404
E+ +ELE+
Sbjct: 714 IEQLIEELESR 724
Score = 37.8 bits (88), Expect = 0.021
Identities = 25/58 (43%), Positives = 31/58 (53%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EEE E E EE EE+ E EE E E EE EEE E EE EE ++L++
Sbjct: 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSL 327
Score = 37.4 bits (87), Expect = 0.026
Identities = 27/61 (44%), Positives = 31/61 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ EEE E E EE EE+ E EE E E EE EEE E EE EE E+ +
Sbjct: 269 LKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLE 328
Query: 404 E 404
E
Sbjct: 329 E 329
Score = 37.0 bits (86), Expect = 0.030
Identities = 27/100 (27%), Positives = 47/100 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E +E +++ +E EE + EE + E E E E EE EEE E E EK
Sbjct: 587 ELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQA 646
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ ++ + +E++ + + +++LEE+
Sbjct: 647 ELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEK 686
Score = 37.0 bits (86), Expect = 0.032
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EE 394
+ LEE+ E+ E E EE EE+ E + EE +E EE EE E+E E+ E +
Sbjct: 328 EERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQL 387
Query: 395 EEEEKELENEGHCDFVKLREMLIRTN 420
EE +EL+ E L E+
Sbjct: 388 EEAIQELKEELAELSAALEEIQEELE 413
Score = 36.7 bits (85), Expect = 0.041
Identities = 26/60 (43%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E + EEE E E EE EE+ E EE E E EE EEE E +ELE
Sbjct: 261 IESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEEL 320
Score = 36.7 bits (85), Expect = 0.048
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ L +EE EE E +E +++ +E EE + EE + E E E E EE EEE
Sbjct: 576 EELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEEL 635
Query: 399 KELENE 404
+ +
Sbjct: 636 ESELEK 641
Score = 36.3 bits (84), Expect = 0.055
Identities = 28/60 (46%), Positives = 31/60 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE E + EEE E E EE EE+ E EE E E EE EEE E EE E+ LE
Sbjct: 264 LELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEK 323
Score = 36.3 bits (84), Expect = 0.064
Identities = 32/101 (31%), Positives = 45/101 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E +E +++ +E EE + EE + E E E E EE EEE E E E+ + ELE
Sbjct: 591 LRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEE 650
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+L E + E RE + E +K E E
Sbjct: 651 LLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELE 691
Score = 35.9 bits (83), Expect = 0.086
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E EE+ EE+ EE E+ EEE E+ EE EE ++ E E+ EE E + E E
Sbjct: 670 IRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELE 729
Score = 35.5 bits (82), Expect = 0.092
Identities = 27/65 (41%), Positives = 36/65 (55%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
K EE E+E E+ E ++ EE +E +EE E EE +EE EE E+E EE
Sbjct: 363 LKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEEL 422
Query: 398 EKELE 402
E+ELE
Sbjct: 423 ERELE 427
Score = 35.5 bits (82), Expect = 0.10
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------EEE 396
E EE E+E EE E E EE EEE ++ EE+ + E +E E E+ EE
Sbjct: 411 ELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEE 470
Query: 397 EEKELENEGHCDFVKLRE 414
EKEL + +L E
Sbjct: 471 HEKELLELYELELEELEE 488
Score = 35.1 bits (81), Expect = 0.15
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
L + EE EE+ EE E E E + E EE+ EE+ EE E+ EEE E+ EE E
Sbjct: 646 AELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELE 705
Query: 399 KELENEG 405
+ L+ G
Sbjct: 706 ELLKKLG 712
Score = 35.1 bits (81), Expect = 0.15
Identities = 26/60 (43%), Positives = 30/60 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E + EEE E E EE EE+ E EE E E EE EEE E EE +EL +
Sbjct: 264 LELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEK 323
Score = 33.6 bits (77), Expect = 0.37
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
GLE+ E+ E +E +E + + EE E + E E+ E+ E EEE +E ++ EE + E
Sbjct: 165 GLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEE 224
Query: 403 NE 404
E
Sbjct: 225 QE 226
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 42.6 bits (100), Expect = 2e-04
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE--- 404
++E +E + ++E E EE+ +E++ EE++E E+E E +E+ E + KE+ +
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEKYLR 61
Query: 405 GHCDFVKLREMLIR 418
H DF +++ L R
Sbjct: 62 VHADFENVKKRLER 75
Score = 35.6 bits (82), Expect = 0.035
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+E + ++E E EE+ +E++ EE++E E+E E +E+ E + +E E+
Sbjct: 5 HNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEK 58
Score = 30.6 bits (69), Expect = 1.6
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
L ++E E EE+ +E++ EE++E E+E E +E+ E + +E E+
Sbjct: 12 LSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEK 58
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 43.0 bits (101), Expect = 2e-04
Identities = 19/103 (18%), Positives = 39/103 (37%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ E+ ++EE+ +E + +E++ E+ ++ +E E + EE E+ E
Sbjct: 109 LQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEET 168
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESN 446
++E ED +E + EE
Sbjct: 169 ASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDY 211
Score = 41.5 bits (97), Expect = 6e-04
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
EEE +E+ + E+ ++EE+ +E + +E++ E+ ++ +E E +E D
Sbjct: 102 EEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETED 161
Query: 409 FVKLREMLIRTNMEDMREKT 428
+ E +DM+EK
Sbjct: 162 SYHVEETASEQYKQDMKEKA 181
Score = 41.1 bits (96), Expect = 9e-04
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E+ E+E E+ +E E+ E + E ++ EE+ +EE+ E+ + +EE ++ +
Sbjct: 174 KQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPV 233
Query: 402 ENEGH 406
E +
Sbjct: 234 EEQQE 238
Score = 39.9 bits (93), Expect = 0.002
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E+ EE E+ +++ +E+ E+E E+ +E E+ E + E ++ EE+ + E+
Sbjct: 157 EETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDN 216
Query: 405 GHCDFVKLREMLIRTNMEDMRE 426
D ++E L + +E+ +E
Sbjct: 217 PVEDSKAIKEELAKEPVEEQQE 238
Score = 39.5 bits (92), Expect = 0.003
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
G +E + +E++ E+ ++ +E E EE E+ EE E+ +++ +E+ E+
Sbjct: 125 GPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQ 184
Query: 398 EKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445
E E E + + ED E+ + K+ L +E
Sbjct: 185 ENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEP 232
Score = 38.8 bits (90), Expect = 0.005
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+E E+ +E E+ E + E ++ EE+ +EE+ E+ + +EE +E EE++E+
Sbjct: 183 EQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQQEVP 240
Score = 38.0 bits (88), Expect = 0.008
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 344 LEEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ EE E EEE + + EEE +E+ + E+ ++EE+ +E + +E+K
Sbjct: 77 VPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDK 136
Query: 400 EL 401
L
Sbjct: 137 FL 138
Score = 37.2 bits (86), Expect = 0.017
Identities = 13/59 (22%), Positives = 32/59 (54%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE + + +++ EEE +E+ + E+ ++EE+ +E + +E++ E ++
Sbjct: 87 EEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDD 145
Score = 36.1 bits (83), Expect = 0.033
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE E EEE + + +++ EEE +E+ + E+ ++EE+ +E + E++
Sbjct: 79 PEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKF 137
Score = 36.1 bits (83), Expect = 0.041
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE E EEE + + +++ EEE +E+ + E+ ++EE+ ++ +E
Sbjct: 79 PEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDK 136
Score = 33.0 bits (75), Expect = 0.38
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
D K GL+E+ E EE E EEE + + +++ EEE +E+ + E+
Sbjct: 60 DAKVLLGLKEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVS 119
Query: 397 EEKE 400
+++E
Sbjct: 120 KQEE 123
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 42.4 bits (100), Expect = 2e-04
Identities = 12/57 (21%), Positives = 47/57 (82%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L EE E+ ++E EE+++ + ++++ ++++++++++++++++++ E+++E+E E++ E
Sbjct: 67 LAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 40.4 bits (95), Expect = 8e-04
Identities = 12/61 (19%), Positives = 50/61 (81%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++++E EE E+ ++E EE+++ + ++++ ++++++++++++++++++ E+++EKE E+
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Query: 404 E 404
+
Sbjct: 121 K 121
Score = 39.3 bits (92), Expect = 0.002
Identities = 12/56 (21%), Positives = 46/56 (82%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE E+ ++E EE+++ + ++++ ++++++++++++++++++ E+++E+E E +LE
Sbjct: 68 AEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 38.5 bits (90), Expect = 0.003
Identities = 8/63 (12%), Positives = 45/63 (71%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+++E EE+++ + ++++ ++++++++++++++++++ E+++E+E E++ E+ +
Sbjct: 72 EKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSE 131
Query: 402 ENE 404
Sbjct: 132 TLS 134
Score = 38.5 bits (90), Expect = 0.004
Identities = 12/59 (20%), Positives = 47/59 (79%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E EE E+ ++E EE+++ + ++++ ++++++++++++++++++ E+++E+E E + E
Sbjct: 65 KELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 38.1 bits (89), Expect = 0.005
Identities = 9/54 (16%), Positives = 46/54 (85%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+E+ ++E EE+++ + ++++ ++++++++++++++++++ E+++E+E E++ E+
Sbjct: 71 IEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 37.4 bits (87), Expect = 0.009
Identities = 10/55 (18%), Positives = 45/55 (81%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E+ ++E EE+++ + ++++ ++++++++++++++++++ E+++E+E E++ E
Sbjct: 70 EIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 33.9 bits (78), Expect = 0.14
Identities = 10/53 (18%), Positives = 41/53 (77%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E +++++E EE E+ ++E EE+++ + ++++ ++++++++++++++K+
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 33.1 bits (76), Expect = 0.25
Identities = 8/54 (14%), Positives = 34/54 (62%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
K +++++++++++++++++ E+++E+E E++ E+ + E E +
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELK 140
Score = 32.7 bits (75), Expect = 0.32
Identities = 10/53 (18%), Positives = 39/53 (73%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E +++++E EE E+ ++E EE+++ + ++++ ++++++++++K+ + +
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 32.0 bits (73), Expect = 0.60
Identities = 9/56 (16%), Positives = 41/56 (73%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E +++++E EE E+ ++E EE+++ + ++++ ++++++++++++ + +++
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKS 110
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 43.3 bits (102), Expect = 2e-04
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE E E EEE EE E+E E E E+EE+ +E+ E+ ++E+ + ++ EE+E +
Sbjct: 210 LESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKG 269
Query: 404 EGHCDFVKLREMLIRTNMED 423
E + L ++ + E
Sbjct: 270 ERPENATYLTKLFRKAEEEQ 289
Score = 41.0 bits (96), Expect = 0.001
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+ +++ +E + E + E E E EEE EE E+E E E E+EE+ +++ E+
Sbjct: 190 EQPADDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQ 249
Query: 406 HCDFVKLREMLIRTNMEDMREKTHCRHY--ELYRKKRLEE 443
D + E+ E+ Y +L+RK E+
Sbjct: 250 QEDALAGDAKKALEEEEEKGERPENATYLTKLFRKAEEEQ 289
Score = 38.7 bits (90), Expect = 0.007
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE +E + E E E+ E+ +++ +E + E + E E E EEE EE E E E
Sbjct: 172 EEERTDEPKVEHEAHEQHEQPADDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETE 231
Score = 38.3 bits (89), Expect = 0.010
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G+++E + E E+EEEEE E E +EE EEE +E + E E E+ E+ +
Sbjct: 135 GIQQENNLDAEPAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAHEQHEQPAD 194
Query: 403 NE 404
++
Sbjct: 195 DD 196
Score = 37.9 bits (88), Expect = 0.014
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E+EEEEE E E +EE EEE +E + E E E+ E+ +++ E +
Sbjct: 144 AEPAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAHEQHEQPADDDPDEWK 201
Score = 37.6 bits (87), Expect = 0.019
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + E E E+ E+ +++ +E + E + E E E EEE EE E+E E E+E+E
Sbjct: 178 EPKVEHEAHEQHEQPADDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDE 237
Score = 33.3 bits (76), Expect = 0.34
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
++E + E E+EEEEE E E +EE EEE +E ++E+E H
Sbjct: 137 QQENNLDAEPAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAH 186
Score = 32.2 bits (73), Expect = 0.84
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
++E + E E+EEEEE E E +EE EEE +E + + +E H
Sbjct: 137 QQENNLDAEPAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAHEQH 189
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 43.5 bits (103), Expect = 2e-04
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L +E + E+E+ E EEE+ E + +EE ++ + E + EE +E E + E
Sbjct: 8 LAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGE 67
Query: 401 LENEG 405
Sbjct: 68 GGGGE 72
Score = 43.1 bits (102), Expect = 4e-04
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E +E + E+E+ E EEE+ E + +EE ++ + E + EE +E E +
Sbjct: 6 EALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAAS 65
Query: 405 G 405
G
Sbjct: 66 G 66
Score = 43.1 bits (102), Expect = 4e-04
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K L E+E+ E EEE+ E + +EE ++ + E + EE +E E + E E
Sbjct: 13 KELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGE 72
Query: 399 KELENEGH 406
+E E
Sbjct: 73 EEEEEAKA 80
Score = 42.7 bits (101), Expect = 4e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+E E E +E + E+E+ E EEE+ E + +EE ++ + E + EE ELE
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60
Query: 404 EG 405
+
Sbjct: 61 KP 62
Score = 42.7 bits (101), Expect = 5e-04
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L E +E + E+E+ E EEE+ E + +EE ++ + E + EE +E E +
Sbjct: 6 EALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAAS 65
Query: 402 ENEG 405
G
Sbjct: 66 GEGG 69
Score = 42.0 bits (99), Expect = 7e-04
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ E EEE+ E + +EE ++ + E + EE +E E + E EEEE+E + E
Sbjct: 22 EKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEEAKAE 81
Query: 405 GHCDFVKLR 413
LR
Sbjct: 82 AAEFRAYLR 90
Score = 41.2 bits (97), Expect = 0.001
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+E+ E EEE+ E + +EE ++ + E + EE +E E + E E E E
Sbjct: 17 KLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEE 76
Query: 405 GHCDFVKLREMLIRTNMEDMRE 426
+R + + E
Sbjct: 77 EAKAEAAEFRAYLRGGDDALAE 98
Score = 40.8 bits (96), Expect = 0.002
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L E EEE+ E + +EE ++ + E + EE +E E + E EEEEEE K
Sbjct: 22 EKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEEAKAE 81
Query: 402 ENE 404
E
Sbjct: 82 AAE 84
Score = 39.3 bits (92), Expect = 0.005
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E +E + E+E+ E EEE+ E + +EE ++ + E + EE ++
Sbjct: 3 ELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKP 62
Query: 405 G 405
Sbjct: 63 A 63
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 43.6 bits (103), Expect = 2e-04
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L+ E E +E E E E E E EE E EE E+ EEE + +
Sbjct: 195 LDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVK 251
Score = 42.8 bits (101), Expect = 4e-04
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 340 YFNGLEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
Y GL E + E E +E E E E E E EE E EE E+
Sbjct: 183 YIRGLHEGWLGPLDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAP 242
Query: 396 EEEKELENE 404
EEE +
Sbjct: 243 EEENNKPVK 251
Score = 30.5 bits (69), Expect = 3.0
Identities = 13/45 (28%), Positives = 15/45 (33%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E E +E E E E E E EE E E E
Sbjct: 196 DPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETED 240
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 42.1 bits (99), Expect = 3e-04
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+EE E+ EE E E E E+ +E+ + E + EE E EE +E +E +EL +
Sbjct: 92 QEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAKELRELRQDL 151
Query: 406 HCDFVKLREMLIRT 419
+ +LRE L R
Sbjct: 152 REEVEELREELERL 165
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 42.6 bits (101), Expect = 3e-04
Identities = 15/48 (31%), Positives = 17/48 (35%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E E E E EE EEE EEE E ++ EG
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGF 73
Score = 41.8 bits (99), Expect = 6e-04
Identities = 15/52 (28%), Positives = 18/52 (34%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E E E E EE EEE EEE E ++ +E G
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGK 77
Score = 41.1 bits (97), Expect = 8e-04
Identities = 18/60 (30%), Positives = 22/60 (36%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E E E E EE EEE EEE E ++ EE + E EG+
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAEGY 85
Score = 40.3 bits (95), Expect = 0.002
Identities = 15/48 (31%), Positives = 18/48 (37%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ E E E E EE EEE EEE E ++ EE
Sbjct: 24 FDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEE 71
Score = 39.5 bits (93), Expect = 0.003
Identities = 18/62 (29%), Positives = 22/62 (35%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E E EE EEE EEE E ++ EE + E E
Sbjct: 28 PEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAEGYEA 87
Query: 405 GH 406
G+
Sbjct: 88 GY 89
Score = 34.9 bits (81), Expect = 0.100
Identities = 18/62 (29%), Positives = 22/62 (35%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E EE EEE EEE E ++ EE + E E + E
Sbjct: 32 PPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAEGYEAGYQE 91
Query: 405 GH 406
G
Sbjct: 92 GL 93
Score = 32.6 bits (75), Expect = 0.53
Identities = 17/57 (29%), Positives = 21/57 (36%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E EE EEE EEE E ++ EE + E E E +E
Sbjct: 35 PAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAEGYEAGYQE 91
Score = 31.1 bits (71), Expect = 1.6
Identities = 17/55 (30%), Positives = 21/55 (38%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E E EE EEE EEE E ++ EE + E E E +E
Sbjct: 37 APPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAEGYEAGYQE 91
Score = 31.1 bits (71), Expect = 1.7
Identities = 17/56 (30%), Positives = 21/56 (37%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E E EE EEE EEE E ++ EE + E E E +E
Sbjct: 36 AAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAEGYEAGYQE 91
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 43.5 bits (102), Expect = 3e-04
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 9/149 (6%)
Query: 334 SFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
SF+ K+ E+EEEE+ + +EE ++++ +E + EE +EE ++ E EE
Sbjct: 386 SFYQAKWA---EDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEE 442
Query: 394 EEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVIGSNFR 453
EE+E + D K + E ++ Y+ YR R N+ ++R
Sbjct: 443 LSPEEEERQLREFRDMEK-EDREFPDEAELQPSESAIERYKEYRGLR-----NLYTCSWR 496
Query: 454 WSDFSAKTRFGWDYLPYINTGKRLPKIIL 482
+ W L + + + +++
Sbjct: 497 SDEKDPSFPEEWKSLVFFDNYRNAKNLVV 525
Score = 36.2 bits (83), Expect = 0.059
Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
D F E+ ++ + + + E+EEEE+ + +EE ++++ +E +
Sbjct: 363 IDDHGFLPGREQTSKKAAVPKGTSFYQAKWAEDEEEEDGQCNDEESTMSAIDDDDPKEND 422
Query: 396 EEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
EE + E D + E++ + R +R E+
Sbjct: 423 NEEVAGDEESAIDDNEG--------FEELSPEEEERQLREFRDMEKED 462
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45; Provisional.
Length = 193
Score = 42.0 bits (98), Expect = 3e-04
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L++E EE E++ E+ EE E++ EE E+EEE EE++ +EE + +E + +EK L++
Sbjct: 27 LKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEKNLDD 86
Score = 40.9 bits (95), Expect = 7e-04
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E E+ ++E EE E++ E+ EE E++ EE E+EEE EE++ +EE + +E + +
Sbjct: 21 LAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFD 80
Query: 404 EGHCD 408
E + D
Sbjct: 81 EKNLD 85
Score = 38.9 bits (90), Expect = 0.003
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E E E+ ++E EE E++ E+ EE E++ EE E+EEE EE++ +EE + EN+
Sbjct: 19 DELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENK 77
Score = 38.2 bits (88), Expect = 0.006
Identities = 20/57 (35%), Positives = 38/57 (66%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ + +E E E+ ++E EE E++ E+ EE E++ EE E+EEE EE++ ++E++
Sbjct: 14 KRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEID 70
Score = 37.8 bits (87), Expect = 0.007
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E + + +E E E+ ++E EE E++ E+ EE E++ EE E+EEE EE+K E
Sbjct: 11 KEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEE 68
Score = 37.8 bits (87), Expect = 0.007
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N +E + + +E E E+ ++E EE E++ E+ EE E++ EE E+EEE EE++ +
Sbjct: 8 NKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKE 67
Query: 402 E 402
E
Sbjct: 68 E 68
Score = 37.8 bits (87), Expect = 0.008
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E + + +E E E+ ++E EE E++ E+ EE E++ EE E+EEE EE++ + E
Sbjct: 11 KEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEE 68
Score = 37.4 bits (86), Expect = 0.009
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
C+ E + + +E E E+ ++E EE E++ E+ EE E++ EE E+EEE EE++
Sbjct: 5 CRKNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQK 64
Query: 398 EKE 400
KE
Sbjct: 65 PKE 67
Score = 37.0 bits (85), Expect = 0.012
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
+E + + +E E E+ ++E EE E++ E+ EE E++ EE E+EEE +E + + D
Sbjct: 11 KEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEID 70
Query: 409 F 409
+
Sbjct: 71 Y 71
Score = 36.6 bits (84), Expect = 0.017
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE E++ E+ EE E++ EE E+EEE EE++ +EE + +E + +E+ +LE
Sbjct: 32 EEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEKNLDDLE 88
Score = 35.1 bits (80), Expect = 0.060
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E++ E+ EE E++ EE E+EEE EE++ +EE + +E + +E+ ++ E N
Sbjct: 33 EIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEKNLDDLERSN 91
Score = 35.1 bits (80), Expect = 0.063
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+EE E++ E+ EE E++ EE E+EEE EE++ +EE + +E + +E+
Sbjct: 29 KEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEK 82
Score = 34.3 bits (78), Expect = 0.11
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N + + +E + + +E E E+ ++E EE E++ E+ EE E++ EE E+EEE E
Sbjct: 3 NYCRKNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENE 61
Score = 28.5 bits (63), Expect = 8.5
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E++ EE E+EEE EE++ +EE + +E + +E+ ++ E + E + +N
Sbjct: 45 ELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEKNLDDLERSNSDIYSESHKYDN 103
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 42.1 bits (99), Expect = 3e-04
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L+E+ EE + ++ ++E EE E E+ +E E+ + EEE E+E+ EK
Sbjct: 21 EELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEK 78
Score = 41.8 bits (98), Expect = 4e-04
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE +E+ EE + ++ ++E EE E E+ +E E+ + EEE E+EK +
Sbjct: 17 AFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMS 76
Score = 41.8 bits (98), Expect = 4e-04
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LEE +E+ EE + ++ ++E EE E E+ +E E+ + EEE E+E+
Sbjct: 20 LEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSE 77
Score = 41.4 bits (97), Expect = 5e-04
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ EE + ++ ++E EE E E+ +E E+ + EEE E+E+ E+ + +
Sbjct: 25 EKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPAQ 84
Query: 405 GHCDFVK 411
+
Sbjct: 85 MSSTSEE 91
Score = 38.3 bits (89), Expect = 0.006
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE +E+ EE + ++ ++E EE E E+ +E E+ + EEE E E
Sbjct: 18 FALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKV 74
Score = 37.5 bits (87), Expect = 0.012
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
L + ++ ++E EE E E+ +E E+ + EEE E+E+ E+ +E
Sbjct: 30 LPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPA 83
Score = 37.1 bits (86), Expect = 0.014
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ EE +E+ EE + ++ ++E EE E E+ +E E+ + EE+ E
Sbjct: 11 KAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISE 70
Query: 403 NE 404
E
Sbjct: 71 KE 72
Score = 37.1 bits (86), Expect = 0.017
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEEEKEL 401
LEE+ E+ E+ EE +E+ EE + ++ ++E EE E E+ +E E+ +
Sbjct: 5 LEEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSI 64
Query: 402 ENEGH 406
E E
Sbjct: 65 EEEIS 69
Score = 35.6 bits (82), Expect = 0.052
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ EE +E+ EE + ++ ++E EE E E+ +E E+ + EEE +
Sbjct: 12 AEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEK 71
Query: 403 NE 404
+
Sbjct: 72 EK 73
Score = 28.7 bits (64), Expect = 8.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+Y E E+ + EEE E+E+ E+ +E + EEEE++ + EE
Sbjct: 48 RYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPAQMSSTSEEEEKKAKLEE 100
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 40.1 bits (94), Expect = 3e-04
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+EE EE +EE E+ +E EE E EE EEE E+ +E EE EE EEE +E+ E
Sbjct: 20 DEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEA 78
Score = 38.6 bits (90), Expect = 0.001
Identities = 27/55 (49%), Positives = 33/55 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+EE EE +EE E+ +E EE E EE EEE E+ +E EE EE EEE EE
Sbjct: 19 ADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEE 73
Score = 38.2 bits (89), Expect = 0.002
Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEKELE 402
EE +EE E+ +E EE E EE EEE E+ +E EE EE EEE EE E EKE
Sbjct: 24 EEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEAS 83
Score = 37.0 bits (86), Expect = 0.004
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E +EE EE +EE E+ +E EE E EE EEE E+ +E EE +E E E
Sbjct: 14 KAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEE 70
Score = 34.7 bits (80), Expect = 0.027
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E ++ E +EE EE +EE E+ +E EE E EE EEE E+ +E +E E
Sbjct: 10 REIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEA 67
Score = 34.7 bits (80), Expect = 0.029
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
++E EE E EE EEE E+ +E EE EE EEE EE E E+E
Sbjct: 34 IKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASA 84
Score = 28.5 bits (64), Expect = 4.4
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E ++ E +EE EE +EE E+ +E EE E EE EEE E +
Sbjct: 10 REIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEI 59
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 43.4 bits (102), Expect = 3e-04
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EE E ++ + E++ ++ E+ E E EE E EEE E+ E+E
Sbjct: 342 GNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 43.1 bits (101), Expect = 4e-04
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
L + C + N E+ EE E ++ + E++ ++ E+ E E EE E
Sbjct: 325 LSKYIGCLWRNLNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESE 384
Query: 392 EEEEEEEKELENEGHCD 408
EEE E+ E EN+
Sbjct: 385 HEEEVEDYEDENDHSKR 401
Score = 43.1 bits (101), Expect = 4e-04
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE E ++ + E++ ++ E+ E E EE E EEE E+ E++ ++
Sbjct: 343 NEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRI 402
Query: 407 CD 408
CD
Sbjct: 403 CD 404
Score = 43.1 bits (101), Expect = 5e-04
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE E ++ + E++ ++ E+ E E EE E EEE E+ E+E +
Sbjct: 343 NEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRI 402
Query: 406 HCD 408
D
Sbjct: 403 CDD 405
Score = 43.1 bits (101), Expect = 5e-04
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E++ ++ E+ E E EE E EEE E+ E+E + + ++ ELEN
Sbjct: 354 DSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELEN 410
Score = 42.7 bits (100), Expect = 6e-04
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++ ++ E+ E E EE E EEE E+ E+E + + +++E E +E
Sbjct: 358 VPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADE 417
Query: 405 GH 406
+
Sbjct: 418 KN 419
Score = 42.3 bits (99), Expect = 9e-04
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L+ E++ ++ E+ E E EE E EEE E+ E+E + + +++E E
Sbjct: 353 LDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELE 409
Score = 41.9 bits (98), Expect = 0.001
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E ++ + E++ ++ E+ E E EE E EEE E+ E+E + K + ++
Sbjct: 346 AERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDD 405
Score = 41.1 bits (96), Expect = 0.002
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ E++ ++ E+ E E EE E EEE E+ E+E + + +++E E
Sbjct: 356 SSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELEN 410
Score = 41.1 bits (96), Expect = 0.002
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
Y E++ ++ E+ E E EE E EEE E+ E+E + + +++E E
Sbjct: 351 YILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELE 409
Score = 40.7 bits (95), Expect = 0.002
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE++ ++ E+ E E EE E EEE E+ E+E + + +++E E + +N
Sbjct: 360 LEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKN 419
Score = 40.0 bits (93), Expect = 0.004
Identities = 19/73 (26%), Positives = 30/73 (41%)
Query: 329 DKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
D L S + E+ E E EE E EEE E+ E+E + + +++E E
Sbjct: 350 DYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELE 409
Query: 389 EEEEEEEEEEKEL 401
+E+ L
Sbjct: 410 NHFRAADEKNSHL 422
Score = 39.2 bits (91), Expect = 0.006
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
F KY L E+ EE E ++ + E++ ++ E+ E E EE
Sbjct: 324 FLSKYIGCLWRNLNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEES 383
Query: 396 EEEKELENE 404
E E+E+E+
Sbjct: 384 EHEEEVEDY 392
Score = 39.2 bits (91), Expect = 0.007
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E+ EE E ++ + E++ ++ E+ E E EE E EEE E + +
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDEND 397
Query: 408 DF 409
Sbjct: 398 HS 399
Score = 35.0 bits (80), Expect = 0.13
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
E+ EE E ++ + E++ ++ E+ E E EE E EE+ + E D
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDEND 397
Query: 409 FVK 411
K
Sbjct: 398 HSK 400
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 42.5 bits (100), Expect = 4e-04
Identities = 14/55 (25%), Positives = 36/55 (65%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E +++ E +EE EEE E+++ E ++ ++++E++++EE++ +EL+
Sbjct: 64 SASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKA 118
Score = 40.2 bits (94), Expect = 0.002
Identities = 15/61 (24%), Positives = 38/61 (62%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
G +E +++ E +EE EEE E+++ E ++ ++++E++++EE++ E + ++
Sbjct: 62 AGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKARDR 121
Query: 402 E 402
E
Sbjct: 122 E 122
Score = 39.0 bits (91), Expect = 0.004
Identities = 12/52 (23%), Positives = 32/52 (61%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+E +++ E +EE EEE E+++ E ++ ++++E++++EE++
Sbjct: 61 AAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
Score = 38.6 bits (90), Expect = 0.007
Identities = 12/51 (23%), Positives = 32/51 (62%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+E +++ E +EE EEE E+++ E ++ ++++E++++EE++
Sbjct: 62 AGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
Score = 37.1 bits (86), Expect = 0.019
Identities = 12/52 (23%), Positives = 32/52 (61%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E +++ E +EE EEE E+++ E ++ ++++E++++E++ E
Sbjct: 64 SASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRE 115
Score = 30.5 bits (69), Expect = 2.3
Identities = 11/66 (16%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEEE 398
G E++ + + + +E +++ E +EE EEE E++ ++ ++++
Sbjct: 44 GSGSSEQKAKLKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQ 103
Query: 399 KELENE 404
++ + E
Sbjct: 104 EQQQQE 109
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 43.3 bits (103), Expect = 4e-04
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LEE E E E++ EE E +E E+ +EE EE++E+ +EEE++ EE E+E ++ KE +
Sbjct: 524 SLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583
Query: 403 NEGHCDFVKLREM 415
E +LR++
Sbjct: 584 KEADEIIKELRQL 596
Score = 38.7 bits (91), Expect = 0.010
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N L EE E E E++ EE E +E E+ +EE EE++E+ +EEE++ EE E+E ++
Sbjct: 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQ 577
Query: 401 LENE 404
E
Sbjct: 578 AIKE 581
Score = 37.1 bits (87), Expect = 0.031
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E++E+ E EE E E E++ EE E +E E+ +EE EE++E+ +EEE+K LE
Sbjct: 511 IGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE 570
Score = 37.1 bits (87), Expect = 0.033
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E +E E+ +EE EE++E+ +EEE++ EE E+E ++ +E ++E +E +E ++L+
Sbjct: 539 AEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQK 598
Query: 404 EGHCDFVKLREML-IRTNMEDMREKTH 429
G+ VK E++ R + EK
Sbjct: 599 GGYAS-VKAHELIEARKRLNKANEKKE 624
Score = 36.0 bits (84), Expect = 0.078
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E++E+ E EE E E E++ EE E +E E+ +EE EE++E+ +EEE +L E
Sbjct: 513 EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAE 572
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 41.4 bits (97), Expect = 4e-04
Identities = 20/84 (23%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E+E +EEE++ E+ E E+E+ ++ + +++ +E EE +++ ++KE+E +
Sbjct: 3 EVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQ 62
Query: 405 GHCDFVKLREMLIRTNMEDMREKT 428
+ D + ++ E+ R++T
Sbjct: 63 EYLDIAQ----RLKAEFENYRKRT 82
Score = 39.5 bits (92), Expect = 0.002
Identities = 13/59 (22%), Positives = 36/59 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ +EEE++ E+ E E+E+ ++ + +++ +E EE +++ +++E E ++ L+
Sbjct: 8 INKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLD 66
Score = 36.1 bits (83), Expect = 0.032
Identities = 12/47 (25%), Positives = 29/47 (61%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
N L E+ E E+E+ ++ + +++ +E EE +++ +++E E +E
Sbjct: 17 NNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQE 63
Score = 34.1 bits (78), Expect = 0.14
Identities = 10/50 (20%), Positives = 28/50 (56%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ E+ E E+E+ ++ + +++ +E EE +++ +++E E +E
Sbjct: 14 KDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQE 63
Score = 28.3 bits (63), Expect = 8.4
Identities = 11/58 (18%), Positives = 33/58 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ ++ + +++ +E EE +++ +++E E +E + + + E E + E+E+ E+
Sbjct: 32 EQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEM 89
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 42.9 bits (101), Expect = 5e-04
Identities = 23/52 (44%), Positives = 27/52 (51%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE+ +E E +E+ E EEEEEEEEEEEEE E E EE
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 41.7 bits (98), Expect = 0.001
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE+ +E E +E+ E EEEEEEEEEEEEE E E EE E+
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEV 432
Score = 41.7 bits (98), Expect = 0.001
Identities = 23/52 (44%), Positives = 27/52 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EE+ +E E +E+ E EEEEEEEEEEEEE E E EE
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 41.3 bits (97), Expect = 0.001
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
L+E+ E EEEEEEEEEEEEE E E EE
Sbjct: 390 LKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 40.6 bits (95), Expect = 0.002
Identities = 22/50 (44%), Positives = 25/50 (50%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
D + L E +E+ E EEEEEEEEEEEEE E E EE
Sbjct: 379 DATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 40.2 bits (94), Expect = 0.003
Identities = 23/53 (43%), Positives = 27/53 (50%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE+ +E E +E+ E EEEEEEEEEEEEE E E E G
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPG 429
Score = 40.2 bits (94), Expect = 0.003
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE+ +E E +E+ E EEEEEEEEEEEEE E E E+ +
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 39.8 bits (93), Expect = 0.004
Identities = 21/46 (45%), Positives = 25/46 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
++E E +E+ E EEEEEEEEEEEEE E E EE
Sbjct: 383 IDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 35.6 bits (82), Expect = 0.075
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREML 416
EE+ +E E +E+ E EEEEEEEEEEEEE E E E ++ EM
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMP 436
Query: 417 I 417
+
Sbjct: 437 M 437
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 43.1 bits (102), Expect = 5e-04
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+E E+E +E +E+ + +E+ + E+E E ++EE EEE EE E ++LE+
Sbjct: 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
Score = 42.7 bits (101), Expect = 7e-04
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+E +E +E+ + +E+ + E+E E ++EE EEE EE E + E +L+
Sbjct: 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK 889
Query: 404 E 404
E
Sbjct: 890 E 890
Score = 42.4 bits (100), Expect = 8e-04
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++ E+E E+E +E +E+ + +E+ + E+E E ++EE EEE +ELE
Sbjct: 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA 876
Score = 42.0 bits (99), Expect = 0.001
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E E+E +E +E+ + +E+ + E+E E ++EE EEE EE E + E L +
Sbjct: 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
Score = 40.8 bits (96), Expect = 0.003
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+EEE+ +E EE EE+ E+E E + E +E E EE EE+ + EE +LE
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785
Score = 40.1 bits (94), Expect = 0.004
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEE 397
LE+E +E +E+ + +E+ + E+E E EE EEE EE E + E + ++E
Sbjct: 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
Query: 398 EKELENEG 405
ELE +
Sbjct: 891 RDELEAQL 898
Score = 39.7 bits (93), Expect = 0.005
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+ E+EEE+ +E EE EE+ E+E E + E +E E EE EE+ + E+ L +
Sbjct: 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND 783
Score = 38.5 bits (90), Expect = 0.011
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E+ E+EEE+ +E EE EE+ E+E E + E +E E EE EE+ + EE
Sbjct: 723 KEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN 782
Query: 402 ENEGHCDFVKLREMLIRTNMEDMRE 426
+ E ++ E I+ + + E
Sbjct: 783 DLEARLSHSRIPE--IQAELSKLEE 805
Score = 38.1 bits (89), Expect = 0.015
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E + E +E E EE EE+ + EE + E E + E + EEE +E
Sbjct: 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIE 811
Score = 38.1 bits (89), Expect = 0.018
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+ + E+E E ++EE EEE EE E + E + ++E +E E + +ELE +
Sbjct: 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK 904
Score = 37.4 bits (87), Expect = 0.029
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ + E E+E E+ E+EEE+ +E EE EE+ E+E E + E +E E +E E
Sbjct: 712 SDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE-EL 770
Query: 406 HCDFVKLREML 416
D KL E L
Sbjct: 771 EEDLHKLEEAL 781
Score = 37.0 bits (86), Expect = 0.034
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
L+E+ + +E+ + E+E E ++EE EEE EE E + E + ++E +E E
Sbjct: 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895
Query: 399 KELEN 403
+L
Sbjct: 896 AQLRE 900
Score = 37.0 bits (86), Expect = 0.038
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ EEE E E E++ E+E E+E +E +E+ + +E+ + EKE+EN
Sbjct: 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
Score = 37.0 bits (86), Expect = 0.038
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E + EEE E E E++ E+E E+E +E +E+ + +E+ K +E E
Sbjct: 797 QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
Query: 406 HCDFVKLREM 415
K E+
Sbjct: 857 ENLNGKKEEL 866
Score = 37.0 bits (86), Expect = 0.042
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ E E+E E+ E+EEE+ +E EE EE+ E+E E + E +E E EE EE
Sbjct: 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773
Score = 35.8 bits (83), Expect = 0.074
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
NG +EE EEE EE E + E + ++E +E E + E E + EE E + E++ K L
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
Query: 402 E 402
Sbjct: 920 S 920
Score = 35.4 bits (82), Expect = 0.097
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 344 LEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
L+E+ + E+E E EE EEE EE E + E + ++E +E E + E E +
Sbjct: 845 LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK 904
Query: 398 EKELENE 404
+ELE +
Sbjct: 905 IEELEAQ 911
Score = 35.4 bits (82), Expect = 0.10
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EEE EE E + E + ++E +E E + E E + EE E + E++++ +E
Sbjct: 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
Score = 35.4 bits (82), Expect = 0.12
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EEE EE E + E + ++E +E E + E E + EE E + E++ + EL+
Sbjct: 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
Score = 35.0 bits (81), Expect = 0.13
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E+E E ++EE EEE EE E + E + ++E +E E + E + E
Sbjct: 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
Query: 406 HCDFVKLREMLIRTN 420
K R+ L
Sbjct: 909 EAQIEKKRKRLSELK 923
Score = 35.0 bits (81), Expect = 0.13
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
LEEE E E E++ E+E E+E +E +E+ + +E+ + E+E E
Sbjct: 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
Score = 35.0 bits (81), Expect = 0.16
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E E + E +E E EE EE+ + EE + E E + E + E+E+
Sbjct: 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEV 807
Score = 34.7 bits (80), Expect = 0.19
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 13/114 (11%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEEEEEEEEEEEE 394
LEE + E E + E + EEE E E++ E+E E+E +
Sbjct: 777 LEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
Query: 395 EEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELY----RKKRLEEE 444
E +E+ ++ + ++ + E++ E+ L R L++E
Sbjct: 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
Score = 33.9 bits (78), Expect = 0.29
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L ++EE EEE EE E + E + ++E +E E + E E + EE E + EK+ +
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
Score = 33.9 bits (78), Expect = 0.35
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE ++E E + EEE E+ EE E E+ EE E+ EE ++ ++ EEE+ ++
Sbjct: 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE 294
Query: 404 E 404
+
Sbjct: 295 K 295
Score = 33.9 bits (78), Expect = 0.36
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 345 EEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+E E EE EEE EE E + E + ++E +E E + E E + EE E
Sbjct: 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
Query: 400 ELENEGH 406
++E +
Sbjct: 911 QIEKKRK 917
Score = 33.9 bits (78), Expect = 0.37
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEKEL 401
+ E+E E E+ EE + E E ++ E EE E E EEE + + EE E +EE ++L
Sbjct: 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
Query: 402 ENE 404
E
Sbjct: 370 RAE 372
Score = 33.5 bits (77), Expect = 0.48
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------- 394
LEEE EE E + E + ++E +E E + E E + EE E + E++
Sbjct: 866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
Query: 395 ----EEEEKELE 402
EEE E+E
Sbjct: 926 LEALEEELSEIE 937
Score = 33.1 bits (76), Expect = 0.57
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E+E E E+ EE + E E ++ E EE E E EEE + ++ EE EL+ E
Sbjct: 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
Score = 33.1 bits (76), Expect = 0.63
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+E E ++E E + EEE E+ EE E E+ EE E+ EE ++ + E E
Sbjct: 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE 288
Score = 32.7 bits (75), Expect = 0.65
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEE 392
+EE EE+ + EE + E E + E + EEE E++
Sbjct: 767 IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
Query: 393 EEEEEEKELENE 404
E+E EKE++
Sbjct: 827 EKEYLEKEIQEL 838
Score = 32.7 bits (75), Expect = 0.80
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFV 410
E+E E ++E E + EEE E+ EE E E+ EE E+ EE K++++ G + +
Sbjct: 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQL 290
Query: 411 KLREML 416
+++E +
Sbjct: 291 RVKEKI 296
Score = 32.3 bits (74), Expect = 0.89
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+E E EE EE+ + EE + E E + E + EEE E +E+E
Sbjct: 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819
Query: 404 E 404
+
Sbjct: 820 K 820
Score = 32.3 bits (74), Expect = 0.93
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEKE 400
LE E EEE + ++ EE E +EE E+ E EE ++E E +E ++ E+ E+ K
Sbjct: 340 ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
Query: 401 LENEGHCDFVKLREMLIRTNME--DMREK 427
NE + +L+E L R + E D+
Sbjct: 400 EINELKRELDRLQEELQRLSEELADLNAA 428
Score = 32.3 bits (74), Expect = 0.98
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEK 399
N L+E +E + + E E+E E+ E+EEE+ +E EE EE+ E+E E + E K
Sbjct: 702 NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
Query: 400 ELENE 404
ELE
Sbjct: 762 ELEAR 766
Score = 31.6 bits (72), Expect = 1.5
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------------- 383
LEEE E+ EE E E+ EE E+ EE ++ ++ EEE
Sbjct: 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE 307
Query: 384 --EEEEEEEEEEEEEEEKELENE 404
E+E E E+ EE +LE E
Sbjct: 308 RSIAEKERELEDAEERLAKLEAE 330
Score = 31.6 bits (72), Expect = 1.5
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E ++E E + EEE E+ EE E E+ EE E+ EE ++ ++ E+E
Sbjct: 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE 288
Score = 31.6 bits (72), Expect = 1.5
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 342 NGLEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ L+ E E +E E + + E E+E E+ E+EEE+ +E EE EE+ E
Sbjct: 691 SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
Query: 399 KELENE 404
+E+EN
Sbjct: 751 QEIENV 756
Score = 31.2 bits (71), Expect = 2.1
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE + E E + EE E + E++ + E + + E EEE E E+ + E+EE E+EL
Sbjct: 894 LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL 951
Score = 31.2 bits (71), Expect = 2.1
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E E E E+E E E+ EE + E E ++ E EE E E EEE K +
Sbjct: 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD 353
Score = 30.8 bits (70), Expect = 2.8
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+E E ++E E + EEE E+ EE E E+ EE E+ EE ++ ++ E E
Sbjct: 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE 288
Score = 30.4 bits (69), Expect = 3.6
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L+E+E E ++E E + EEE E+ EE E E+ EE E+ EE ++ ++
Sbjct: 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL 284
Score = 30.4 bits (69), Expect = 4.2
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+Y L+E+ E E E +E+E E ++E E + EEE E+ EE E E+ EE E
Sbjct: 212 RYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIE 271
Query: 399 KELE 402
+ LE
Sbjct: 272 QLLE 275
Score = 29.7 bits (67), Expect = 6.2
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E ++ E EE E E EEE + ++ EE E +EE E+ E EE ++E E
Sbjct: 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
Query: 402 ENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E D+ + E L R E RE +RL EE
Sbjct: 386 E---LKDYREKLEKLKREINELKRE----LDRLQEELQRLSEE 421
Score = 29.7 bits (67), Expect = 6.9
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E +E +E + + E E+E E+ E+EEE+ +E EE EE+ E++
Sbjct: 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
Query: 404 E 404
+
Sbjct: 757 K 757
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 41.0 bits (97), Expect = 6e-04
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+ + E E+E ++ EEE+EE E+ E E + E E+ EEEE + EEK +E
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
Score = 39.9 bits (94), Expect = 0.001
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L+ E+ + E E+E ++ EEE+EE E+ E E + E E+ EEEE + EE+ ++
Sbjct: 116 LQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
Score = 38.7 bits (91), Expect = 0.003
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E+ + E E+E ++ EEE+EE E+ E E + E E+ EEEE + EE+ E+
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIA 173
Score = 38.7 bits (91), Expect = 0.004
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
G+ + + E+ + E E+E ++ EEE+EE E+ E E + E E+ EEEE + EE++
Sbjct: 111 GMRKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKR 167
Score = 38.0 bits (89), Expect = 0.006
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
+ E+ + E E+E ++ EEE+EE E+ E E + E E+ EEEE+++E + H D
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHAD 170
Score = 38.0 bits (89), Expect = 0.007
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+ + E E+E ++ EEE+EE E+ E E + E E+ EEEE + EE+ E
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIA 173
Score = 37.2 bits (87), Expect = 0.012
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
G E E+E ++ EEE+EE E+ E E + E E+ EEEE + EE+ +E
Sbjct: 120 QGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 41.0 bits (96), Expect = 6e-04
Identities = 23/50 (46%), Positives = 26/50 (52%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE + EE EEE E E EE EE EE E+ E E E +E E K L
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENKYL 51
Score = 40.2 bits (94), Expect = 0.001
Identities = 22/48 (45%), Positives = 25/48 (52%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + EE EEE E E EE EE EE E+ E E E E EN+
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENK 49
Score = 39.4 bits (92), Expect = 0.002
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE + EE EEE E E EE EE EE E+ E E E +E E + E++N
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENKYLRAHAEMQN 59
Score = 38.7 bits (90), Expect = 0.004
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ EE + EE EEE E E EE EE EE E+ E E E +E E
Sbjct: 1 MSEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
Score = 38.3 bits (89), Expect = 0.005
Identities = 22/45 (48%), Positives = 25/45 (55%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
EE + EE EEE E E EE EE EE E+ E EL NE +F
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEF 46
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 39.2 bits (92), Expect = 7e-04
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++ + +EE+EEE E + + E+E+ + E EEEEEE++ L EG
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEEG 109
Score = 38.0 bits (89), Expect = 0.002
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
L++ + +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 63 LDDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
++ + +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
++ + +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
++ + +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
++ + +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
++ + +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
++ + +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
++ + +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
++ + +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
++ + +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 36.1 bits (84), Expect = 0.008
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+ +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 66 VGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 35.3 bits (82), Expect = 0.019
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 66 VGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEE 371
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEE 372
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEE 373
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEE 374
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEE 375
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEE 376
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEE 377
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEE 378
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEE 379
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEE 380
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEE 381
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEE 382
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEE 383
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEE 384
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEE 385
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEE 386
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEE 387
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEE 388
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEE 389
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEE 390
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEE 391
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEE 392
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEE 395
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE+ EE+EEE+++EEE+EEEEE+ L
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEALA 100
Score = 35.9 bits (83), Expect = 0.010
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE+ EE+EEE+++EEE+EEE+E G
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEALAG 101
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 41.5 bits (98), Expect = 7e-04
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ E E + E E E+E E+++EEE+ E +E +E ++ E+ E E ++L E
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAE 262
Score = 38.8 bits (91), Expect = 0.006
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
+E+ E E + E E E+E E+++EEE+ E +E +E ++ +++E E
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAE---- 255
Query: 409 FVKLREMLIR 418
RE L+
Sbjct: 256 ----REKLLA 261
Score = 38.8 bits (91), Expect = 0.006
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E+++EEE+ E +E +E ++ E+ E E E+ E+E E + +E++EL
Sbjct: 220 QELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEELLK 279
Query: 404 EGH 406
EG
Sbjct: 280 EGF 282
Score = 34.2 bits (79), Expect = 0.16
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 344 LEEEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
L E+++EEE+ E +E +E E E E+ E+E E + +E+EE +E
Sbjct: 223 LREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEELLKEGF 282
Query: 395 EEEEKELENE 404
+ E + L+ E
Sbjct: 283 KTEAESLQKE 292
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22. The
mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded pre-proteins
into mitochondria, is very complex with at least 19
components. These proteins include several chaperone
proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner membrane
translocase (Tim) and three "motor" proteins. This
family represents the Tom22 proteins. The N terminal
region of Tom22 has been shown to have chaperone-like
activity, and the C terminal region faces the
intermembrane face.
Length = 136
Score = 39.5 bits (93), Expect = 8e-04
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
L E E+E +E+ + +EE ++++E++ + + + ++ + E E
Sbjct: 4 LTEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 38.4 bits (90), Expect = 0.002
Identities = 10/46 (21%), Positives = 27/46 (58%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E+E +E+ + +EE ++++E++ + + + ++ + ENE
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 37.6 bits (88), Expect = 0.004
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E E+E +E+ + +EE ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 37.6 bits (88), Expect = 0.004
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E E+E +E+ + +EE ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 37.6 bits (88), Expect = 0.004
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E E+E +E+ + +EE ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 37.6 bits (88), Expect = 0.004
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E E+E +E+ + +EE ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 37.6 bits (88), Expect = 0.004
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E E+E +E+ + +EE ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 37.6 bits (88), Expect = 0.004
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E E+E +E+ + +EE ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 37.6 bits (88), Expect = 0.004
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E E+E +E+ + +EE ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 37.6 bits (88), Expect = 0.004
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E E+E +E+ + +EE ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 35.7 bits (83), Expect = 0.017
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E+E +E+ + +EE ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 34.9 bits (81), Expect = 0.041
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E+E +E+ + +EE ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 41.9 bits (98), Expect = 8e-04
Identities = 15/57 (26%), Positives = 37/57 (64%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+ EE + ++ E+E ++ E+E + +E++++ EE E++ + E++++EE+ K
Sbjct: 85 EEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKA 141
Score = 41.5 bits (97), Expect = 0.001
Identities = 16/58 (27%), Positives = 40/58 (68%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E++ +++EE+ EE + ++ E+E ++ E+E + +E++++ EE E++ + E+K+ E
Sbjct: 78 EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQE 135
Score = 40.7 bits (95), Expect = 0.002
Identities = 16/61 (26%), Positives = 40/61 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE+ EE + ++ E+E ++ E+E + +E++++ EE E++ + E++++EE+ ++
Sbjct: 84 KEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAA 143
Query: 404 E 404
E
Sbjct: 144 E 144
Score = 40.3 bits (94), Expect = 0.003
Identities = 15/61 (24%), Positives = 40/61 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ ++ E+E ++ E+E + +E++++ EE E++ + E++++EE+ + E++K+ E
Sbjct: 92 LKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEA 151
Query: 404 E 404
Sbjct: 152 A 152
Score = 39.9 bits (93), Expect = 0.003
Identities = 15/57 (26%), Positives = 39/57 (68%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++EE+ EE + ++ E+E ++ E+E + +E++++ EE E++ + E++++EE+
Sbjct: 82 KKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQA 138
Score = 39.9 bits (93), Expect = 0.004
Identities = 14/55 (25%), Positives = 37/55 (67%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+E ++ E+E + +E++++ EE E++ + E++++EE+ + E++++ E K
Sbjct: 99 EQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAK 153
Score = 39.2 bits (91), Expect = 0.005
Identities = 15/60 (25%), Positives = 39/60 (65%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ ++ E++ +++EE+ EE + ++ E+E ++ E+E + +E++++ EE EK+ + E
Sbjct: 71 QSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLE 130
Score = 39.2 bits (91), Expect = 0.006
Identities = 14/58 (24%), Positives = 37/58 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE+E + +E++++ EE E++ + E++++EE+ + E++++ E + + E +L
Sbjct: 106 LEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKL 163
Score = 38.8 bits (90), Expect = 0.008
Identities = 14/60 (23%), Positives = 40/60 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ +++EE+ EE + ++ E+E ++ E+E + +E++++ EE E++ + E++++ E
Sbjct: 79 QQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQA 138
Score = 38.0 bits (88), Expect = 0.012
Identities = 14/58 (24%), Positives = 39/58 (67%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++ +++EE+ EE + ++ E+E ++ E+E + +E++++ EE E++ + ++ + E
Sbjct: 78 EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQE 135
Score = 38.0 bits (88), Expect = 0.013
Identities = 15/59 (25%), Positives = 40/59 (67%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++ +++EE+ EE + ++ E+E ++ E+E + +E++++ EE E++ + E++ + E
Sbjct: 78 EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEE 136
Score = 38.0 bits (88), Expect = 0.015
Identities = 14/60 (23%), Positives = 39/60 (65%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + ++ E+E ++ E+E + +E++++ EE E++ + E++++EE+ + E++ + E
Sbjct: 91 ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAE 150
Score = 37.2 bits (86), Expect = 0.023
Identities = 12/60 (20%), Positives = 37/60 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ ++ E++ +++EE+ EE + ++ E+E ++ E+E + +E++++ EE ++
Sbjct: 70 QQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQL 129
Score = 36.9 bits (85), Expect = 0.029
Identities = 13/56 (23%), Positives = 36/56 (64%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++ ++ E++ +++EE+ EE + ++ E+E ++ E+E + +E++++ EE E
Sbjct: 69 SQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAE 124
Score = 36.5 bits (84), Expect = 0.042
Identities = 12/57 (21%), Positives = 37/57 (64%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ ++ ++ E++ +++EE+ EE + ++ E+E ++ E+E + +E++++ +E E
Sbjct: 68 QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAE 124
Score = 36.1 bits (83), Expect = 0.053
Identities = 13/59 (22%), Positives = 37/59 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L++ E+E + +E++++ EE E++ + E++++EE+ + E++++ E + + E
Sbjct: 103 LKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAA 161
Score = 34.5 bits (79), Expect = 0.15
Identities = 18/97 (18%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
+ ++ ++ E++ +++EE+ EE + ++ E+E ++ E+E + +E++++ E E
Sbjct: 68 QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAE--- 124
Query: 408 DFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
K ++ + E R+ +KK+ E
Sbjct: 125 ---KQAQLEQKQQEEQARKAA------AEQKKKAEAA 152
Score = 34.5 bits (79), Expect = 0.16
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ + ++ ++ E++ +++EE+ EE + ++ E+E ++ E+E K E
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQE 115
Score = 34.5 bits (79), Expect = 0.18
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE + EE + + E +++ E E + E+ + E E + + E++ E EEK
Sbjct: 174 EEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK 228
Score = 33.8 bits (77), Expect = 0.26
Identities = 11/58 (18%), Positives = 33/58 (56%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
G ++ + ++ ++ E++ +++EE+ EE + ++ E+E ++ E+E + +E
Sbjct: 58 GAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQE 115
Score = 33.8 bits (77), Expect = 0.29
Identities = 11/57 (19%), Positives = 34/57 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L+ +E++++ EE E++ + E++++EE+ + E++++ E + + E + +
Sbjct: 111 LKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAA 167
Score = 33.8 bits (77), Expect = 0.29
Identities = 11/57 (19%), Positives = 28/57 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E++++ E + + E + + E +++ EE + EE + + E +++ E E
Sbjct: 143 AEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAE 199
Score = 33.0 bits (75), Expect = 0.44
Identities = 12/60 (20%), Positives = 34/60 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+++ EE E++ + E++++EE+ + E++++ E + + E + + E +K+ E
Sbjct: 117 QKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEA 176
Score = 33.0 bits (75), Expect = 0.49
Identities = 11/55 (20%), Positives = 32/55 (58%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E++++ EE E++ + E++++EE+ + E++++ E + + E + + E
Sbjct: 114 QEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAE 168
Score = 32.6 bits (74), Expect = 0.59
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +++ EE + EE + + E +++ E E + E+ + E E + + EK+ E
Sbjct: 166 AAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAA 224
Score = 32.6 bits (74), Expect = 0.60
Identities = 9/55 (16%), Positives = 33/55 (60%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++ + ++ ++ E++ +++EE+ EE + ++ E+E ++ E+E + +++
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQ 116
Score = 32.6 bits (74), Expect = 0.69
Identities = 11/59 (18%), Positives = 32/59 (54%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++ + E++++EE+ + E++++ E + + E + + E +++ EE + E
Sbjct: 124 EKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEE 182
Score = 32.6 bits (74), Expect = 0.70
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
LE++++EE+ + E++++ E + + E + + E +++ EE + EE K
Sbjct: 129 LEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAK 184
Score = 32.6 bits (74), Expect = 0.70
Identities = 12/60 (20%), Positives = 34/60 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++++ EE E++ + E++++EE+ + E++++ E + + E + + E K+ E
Sbjct: 116 QQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEE 175
Score = 32.2 bits (73), Expect = 0.74
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++++ E + + E + + E +++ EE + EE + + E +K+ E E
Sbjct: 144 EQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAE 199
Score = 32.2 bits (73), Expect = 0.92
Identities = 11/56 (19%), Positives = 33/56 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E++++ EE E++ + E++++EE+ + E++++ E + + E + + E
Sbjct: 113 AQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAE 168
Score = 32.2 bits (73), Expect = 0.93
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +++ EE + EE + + E +++ E E + E+ + E E + + E++ E E
Sbjct: 167 AEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAE 226
Score = 31.8 bits (72), Expect = 1.0
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + + E +++ EE + EE + + E +++ E E + E+ + E E
Sbjct: 158 AEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAE 212
Score = 31.8 bits (72), Expect = 1.2
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E +++ EE + EE + + E +++ E E + E+ + E E + + E+K
Sbjct: 166 AAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKK 220
Score = 31.8 bits (72), Expect = 1.2
Identities = 11/57 (19%), Positives = 26/57 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + + E +++ EE + EE + + E +++ E E + E+ + E +
Sbjct: 157 AAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEA 213
Score = 31.5 bits (71), Expect = 1.3
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE + + E +++ E E + E+ + E E + + E++ E EE+ EK+
Sbjct: 180 AEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKK 234
Score = 31.5 bits (71), Expect = 1.3
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE + EE + + E +++ E E + E+ + E E + + E++ E E++
Sbjct: 172 KAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK 228
Score = 31.5 bits (71), Expect = 1.4
Identities = 11/57 (19%), Positives = 25/57 (43%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E + + E + + E +++ EE + EE + + E +++ E E + E
Sbjct: 149 AEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAE 205
Score = 31.5 bits (71), Expect = 1.4
Identities = 11/48 (22%), Positives = 29/48 (60%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ + ++ ++ E++ +++EE+ EE + ++ E+E K+LE E
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKE 109
Score = 31.5 bits (71), Expect = 1.4
Identities = 10/54 (18%), Positives = 31/54 (57%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ + ++ ++ E++ +++EE+ EE + ++ E+E ++ E+E+ E
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQE 115
Score = 31.5 bits (71), Expect = 1.4
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E++++ E + + E + + E +++ EE + EE + + E +++ E E
Sbjct: 144 EQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAE 199
Score = 31.5 bits (71), Expect = 1.7
Identities = 11/58 (18%), Positives = 31/58 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++++EE+ + E++++ E + + E + + E +++ EE + EE + + E
Sbjct: 131 QKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAE 188
Score = 31.1 bits (70), Expect = 1.7
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE + + E +++ E E + E+ + E E + + E++ E EE+ E +
Sbjct: 180 AEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKK 234
Score = 31.1 bits (70), Expect = 2.2
Identities = 10/58 (17%), Positives = 25/58 (43%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E + + E + + E +++ EE + EE + + E +++ E E + +
Sbjct: 149 AEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206
Score = 31.1 bits (70), Expect = 2.2
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE + + E +++ E E + E+ + E E + + E++ E EE+ E+K+
Sbjct: 180 AEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAA 237
Score = 30.7 bits (69), Expect = 2.3
Identities = 11/60 (18%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+++EE+ + E++++ E + + E + + E +++ EE + EE + K
Sbjct: 132 KQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAA 191
Score = 30.7 bits (69), Expect = 2.4
Identities = 10/60 (16%), Positives = 28/60 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ + E++++ E + + E + + E +++ EE + EE + + E + +
Sbjct: 136 EQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKK 195
Score = 30.7 bits (69), Expect = 2.4
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + EE + + E +++ E E + E+ + E E + + E++ E EE+ E +
Sbjct: 175 EAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKK 234
Score = 30.7 bits (69), Expect = 2.5
Identities = 11/58 (18%), Positives = 28/58 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E +++ E E + E+ + E E + + E++ E EE+ E+++ + + +
Sbjct: 188 EAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKA 245
Score = 30.7 bits (69), Expect = 2.7
Identities = 11/55 (20%), Positives = 31/55 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E++ + E++++EE+ + E++++ E + + E + + E +++ EE K
Sbjct: 124 EKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAK 178
Score = 30.7 bits (69), Expect = 2.7
Identities = 11/60 (18%), Positives = 28/60 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+++ E + + E + + E +++ EE + EE + + E +++ E E + E
Sbjct: 146 KKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAE 205
Score = 30.3 bits (68), Expect = 2.9
Identities = 11/58 (18%), Positives = 25/58 (43%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + + E + + E +++ EE + EE + + E +++ E E K +
Sbjct: 149 AEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206
Score = 30.3 bits (68), Expect = 3.3
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E + + E +++ EE + EE + + E +++ E E + E+ + E E
Sbjct: 158 AEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAE 212
Score = 30.3 bits (68), Expect = 3.8
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +++ EE + EE + + E +++ E E + E+ + E E + + E++ + E
Sbjct: 168 EAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEE 227
Score = 29.9 bits (67), Expect = 4.2
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ EE + + E +++ E E + E+ + E E + + E++ E EE+
Sbjct: 175 EAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAA 230
Score = 29.5 bits (66), Expect = 6.6
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
L+ E +++ EE + EE + + E +++ E E + E+ + E E +
Sbjct: 163 LKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKA 215
Score = 29.1 bits (65), Expect = 6.8
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 345 EEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++EE+ + E++++ E E + + E +++ EE + EE + + E
Sbjct: 133 QQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAA 192
Query: 400 ELENE 404
+ + E
Sbjct: 193 KKKAE 197
Score = 29.1 bits (65), Expect = 8.4
Identities = 10/60 (16%), Positives = 27/60 (45%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + E + + E +++ EE + EE + + E +++ E E + ++ + E
Sbjct: 151 AAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAE 210
Score = 29.1 bits (65), Expect = 8.7
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + + E +++ EE + EE + + E +++ E E + E+ + E E
Sbjct: 158 AEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAE 212
Score = 28.8 bits (64), Expect = 9.4
Identities = 11/58 (18%), Positives = 28/58 (48%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +++ E E + E+ + E E + + E++ E EE+ E+++ + + +
Sbjct: 188 EAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKA 245
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 42.2 bits (99), Expect = 8e-04
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 324 SNPTIDKNLYSFFDC-KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------- 373
+ P DK+LY C N EE + + ++ E+E+E E E +EE ++
Sbjct: 522 TKPIPDKHLYRL--CWSLRNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNW 579
Query: 374 ----EEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++ + + EEEE + + + EK L
Sbjct: 580 FCGFDQGKAPKLTEEEEAALKMKMTDTSEKPL 611
Score = 30.2 bits (68), Expect = 4.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 376 EEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
EE + + ++ E+E+E E E ++E + G C
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKKPGCC 573
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 40.4 bits (95), Expect = 9e-04
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ ++ E EEE EE EE EE E+ +EE + E EE EE + E+E E+E +
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQ 61
Score = 40.4 bits (95), Expect = 0.001
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
LE+ ++ E EEE EE EE EE E+ +EE + E EE EE + E+E E
Sbjct: 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAE 57
Score = 38.1 bits (89), Expect = 0.006
Identities = 25/59 (42%), Positives = 31/59 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L E EEE EE EE EE E+ +EE + E EE EE + E+E E E + LE
Sbjct: 12 LREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLE 70
Score = 38.1 bits (89), Expect = 0.006
Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EEE EE EE EE E+ +EE + E EE EE + E+E E E + E
Sbjct: 12 LREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLE 70
Score = 37.4 bits (87), Expect = 0.010
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ ++ E EEE EE EE EE E+ +EE + E EE EE ++ E E
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKE 55
Score = 36.2 bits (84), Expect = 0.028
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ ++ E EEE EE EE EE E+ +EE + E EE EE + E E E
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAE 57
Score = 32.7 bits (75), Expect = 0.33
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
EE EE EE EE E+ +EE + E EE EE + E+E E
Sbjct: 14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAE 57
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 42.0 bits (99), Expect = 9e-04
Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE EE+E ++ EEE ++ EE E E+ EE +E EE E++ EEE EE EE EL
Sbjct: 614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673
Query: 404 E 404
E
Sbjct: 674 E 674
Score = 40.8 bits (96), Expect = 0.002
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K+ E EE +E+E+E EE E E E E EE E+ E+E +E EE +EE EE
Sbjct: 183 KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE 242
Query: 399 KELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRK-KRLEE 443
E E E + E IR +E+ E+ EL K K L+E
Sbjct: 243 LEKELESLEGSKRKLEEKIR-ELEERIEELKKEIEELEEKVKELKE 287
Score = 40.0 bits (94), Expect = 0.004
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ L++ E+E E EE+E ++ EEE ++ EE E E+ EE +E EE E++ EEE
Sbjct: 602 NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY 661
Query: 399 KELENEGHCDFVKLREMLIR 418
+EL E +++L L
Sbjct: 662 EELREE----YLELSRELAG 677
Score = 38.5 bits (90), Expect = 0.012
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
LE+E E E + + EE+ E EE EE ++E EE EE+ +E +E +E+ EE +
Sbjct: 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK 297
Score = 37.7 bits (88), Expect = 0.022
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
LEE E++ EE E+ +E+ + + E +E E+ EE +++ E E++ +E EEE E
Sbjct: 516 NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEL 575
Query: 398 EKELENEGHCDFVKLREML 416
KELE G +L E L
Sbjct: 576 LKELEELGFESVEELEERL 594
Score = 37.4 bits (87), Expect = 0.028
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 22/88 (25%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEE----------------------EEEEEE 376
+ L++E EE EE+ +E +E +E+ EE + EEE
Sbjct: 266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEING 325
Query: 377 EEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE +E EE+EE EE +++ KELE
Sbjct: 326 IEERIKELEEKEERLEELKKKLKELEKR 353
Score = 36.6 bits (85), Expect = 0.046
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----------EEEEEE 391
NG+EE +E EE+EE EE +++ +E E+ EE EE E EE ++
Sbjct: 324 NGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG 383
Query: 392 EEEEEEEKELEN 403
E+ EKELE
Sbjct: 384 LTPEKLEKELEE 395
Score = 35.8 bits (83), Expect = 0.090
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
E EE +E EE E + E+E +E EE+E + +E E E+ ++E + ++ + +
Sbjct: 444 ELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAE 503
Query: 409 FVK-LREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVIG 449
+K L E L + N+E++ +K YE ++K ++ + +
Sbjct: 504 QLKELEEKLKKYNLEELEKKA--EEYEKLKEKLIKLKGEIKS 543
Score = 35.4 bits (82), Expect = 0.11
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K LE+ EE EE E EE + ++EE E ++ E+ E+E EE E+ +EE E
Sbjct: 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIE 404
Query: 399 KELEN 403
+E+
Sbjct: 405 EEISK 409
Score = 35.0 bits (81), Expect = 0.15
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 20/81 (24%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------------------EEEEEE 383
LEE+EE EE +++ +E E+ EE EE E EE E+ E+E
Sbjct: 333 LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE 392
Query: 384 EEEEEEEEEEEEEEEKELENE 404
EE E+ +EE EEE ++
Sbjct: 393 LEELEKAKEEIEEEISKITAR 413
Score = 34.7 bits (80), Expect = 0.20
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 14/93 (15%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
K LE++ EEE EE EE E E E EE E+ EE ++ E+ +EE EE
Sbjct: 647 KELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706
Query: 395 EEEEKELENEGHCDFVKLREMLIRTNMEDMREK 427
E+ +KELE KL + L R +E++REK
Sbjct: 707 EKAKKELE--------KLEKALER--VEELREK 729
Score = 34.3 bits (79), Expect = 0.23
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE + ++EE E ++ E+ E+E EE E+ +EE EEE + EL+ E
Sbjct: 361 HELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE 420
Query: 405 G 405
Sbjct: 421 I 421
Score = 34.3 bits (79), Expect = 0.25
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------- 389
+ + L+++ E E++ +E EEE E +E EE E EE EE +E E
Sbjct: 547 ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLE 606
Query: 390 ------EEEEEEEEEKELENEGHCDFVKLREML-----IRTNMEDMR----EKTHCRHYE 434
E E EE+E K+LE E F +L E +R +E++ E+ + E
Sbjct: 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE 666
Query: 435 LYRKKRLE 442
Y + E
Sbjct: 667 EYLELSRE 674
Score = 33.5 bits (77), Expect = 0.46
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L+ E + ++E E+ EE +++ E E++ +E EEE E +E EE E EE E+
Sbjct: 534 LIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER 593
Query: 401 LE 402
L+
Sbjct: 594 LK 595
Score = 32.7 bits (75), Expect = 0.63
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ + + ++EE E ++ E+ E+E EE E+ +EE EEE + E ++E
Sbjct: 362 ELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI 421
Query: 399 KELE 402
KEL+
Sbjct: 422 KELK 425
Score = 32.7 bits (75), Expect = 0.69
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----- 393
K GL E+ E+E EE E+ +EE EEE + E ++E +E ++ EE ++
Sbjct: 379 KRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
Query: 394 -------EEEEEKELENEGHCDFVKLREMLIRT 419
EE KEL E + ++ + L
Sbjct: 439 PVCGRELTEEHRKELLEEYTAELKRIEKELKEI 471
Score = 32.7 bits (75), Expect = 0.73
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE E ++ E+ E+E EE E+ +EE EEE + E ++E +E +K +E
Sbjct: 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE 429
Score = 32.7 bits (75), Expect = 0.81
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE E ++ E+ E+E EE E+ +EE EEE + E ++E +E K+
Sbjct: 370 KKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE 429
Query: 404 E 404
E
Sbjct: 430 E 430
Score = 32.0 bits (73), Expect = 1.2
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE ++ E+ E+E EE E+ +EE EEE + E ++E +E ++ +EL+
Sbjct: 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432
Score = 31.2 bits (71), Expect = 2.0
Identities = 16/55 (29%), Positives = 35/55 (63%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ +E EE+ ++ EE E++ EE E+ +E+ + + E + ++E E+ +EL+ +
Sbjct: 503 EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKK 557
Score = 30.8 bits (70), Expect = 2.5
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE+E + +E E E+ ++E E + +E E+ +E EE+ ++ EE E++ +E E
Sbjct: 472 EEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK 529
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 40.8 bits (96), Expect = 0.001
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E+ EEEE E+ E +EEE E +E +E EE E EE + +E
Sbjct: 26 AGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEEGFE 85
Query: 404 EGHCDFVKLREM 415
EG + L +
Sbjct: 86 EGQEEGRVLERL 97
Score = 37.4 bits (87), Expect = 0.012
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+ E+ EEEE E+ E +EEE E +E +E EE E EE + EG
Sbjct: 25 NAGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEEGF 84
Score = 37.0 bits (86), Expect = 0.019
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEEE E+ E +EEE E +E +E EE E EE + EE EE +E+ E
Sbjct: 37 LEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGRVLER 96
Query: 406 HCDFVK 411
+
Sbjct: 97 LAKLIA 102
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 41.9 bits (99), Expect = 0.001
Identities = 26/59 (44%), Positives = 30/59 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E E EE+ E EE E E E E EE+ E E EEE EE EE EL ++
Sbjct: 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580
Score = 41.2 bits (97), Expect = 0.002
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E E EE+ E EE E E E E EE+ E E EEE EE EE E K E
Sbjct: 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584
Query: 404 EGHCDFV-KLREML-----IRTNMEDMREK 427
+ + + ++R +L +E +REK
Sbjct: 585 KERIESLERIRTLLAAIADAEDEIERLREK 614
Score = 41.2 bits (97), Expect = 0.002
Identities = 26/65 (40%), Positives = 31/65 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE E+ EE E E EE+ E EE E E E E EE+ E E EEE E+ E
Sbjct: 514 LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREE 573
Query: 404 EGHCD 408
+
Sbjct: 574 VAELN 578
Score = 40.8 bits (96), Expect = 0.003
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
NGLE E E +EE E EE+ E+ E +E +E EE EE EE E E E E+ E
Sbjct: 209 NGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIA 268
Query: 402 ENE 404
E E
Sbjct: 269 ETE 271
Score = 38.9 bits (91), Expect = 0.009
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N E E+ ++ EE EE EE E E E EE E E+ EE EE EEE EE +
Sbjct: 340 HNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399
Query: 401 LENEGHCDFVKLREML--IRTNMEDMREK 427
+ D + L +R +++RE+
Sbjct: 400 FGDAP-VDLGNAEDFLEELREERDELRER 427
Score = 36.9 bits (86), Expect = 0.032
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEE 397
LE E EE E E+ EE EE EEE EE E + E+ EE EE +E E
Sbjct: 368 LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427
Query: 398 EKELE 402
E ELE
Sbjct: 428 EAELE 432
Score = 35.8 bits (83), Expect = 0.074
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEE 395
GL++ + E E EE E+ +EE + EE EE E E+ ++ EE EE
Sbjct: 303 GLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR 362
Query: 396 EEEKELENEGHCDFVKLREMLIRTNMEDMRE 426
EE ELE+E + + R +E++ E
Sbjct: 363 EEAAELESELEEAREAVEDR--REEIEELEE 391
Score = 35.4 bits (82), Expect = 0.10
Identities = 24/57 (42%), Positives = 27/57 (47%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E+ EE E E EE+ E EE E E E E EE+ E E E E E
Sbjct: 512 ERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE 568
Score = 35.0 bits (81), Expect = 0.13
Identities = 24/60 (40%), Positives = 28/60 (46%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+ E EE E+ EE E E EE+ E EE E E E E EE+ E E E E
Sbjct: 508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA 567
Score = 35.0 bits (81), Expect = 0.15
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEKEL 401
LEEE EE E + + E+ EE EE +E E E E E E EE + L
Sbjct: 389 LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAL 448
Query: 402 ENEGHC 407
G C
Sbjct: 449 LEAGKC 454
Score = 34.6 bits (80), Expect = 0.17
Identities = 27/62 (43%), Positives = 31/62 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE E E+ EEE EE EE E E+ E E+ E EE E+ EE E E EEK
Sbjct: 480 LEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERA 539
Query: 404 EG 405
E
Sbjct: 540 EE 541
Score = 34.6 bits (80), Expect = 0.19
Identities = 23/57 (40%), Positives = 27/57 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+ E E+ E EE E+ EE E E EE+ E EE E E E E EEK
Sbjct: 501 AEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557
Score = 34.6 bits (80), Expect = 0.20
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 344 LEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
LEE EE EE E E E+ E E E E EE EE + E EE EEE ++ E
Sbjct: 243 LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA 302
Query: 400 ELE 402
L+
Sbjct: 303 GLD 305
Score = 34.6 bits (80), Expect = 0.20
Identities = 22/51 (43%), Positives = 26/51 (50%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E EE+ E EE E E E+ EEE EE EE E E+ E E +E
Sbjct: 462 EGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIE 512
Score = 34.6 bits (80), Expect = 0.21
Identities = 23/55 (41%), Positives = 29/55 (52%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE E E+ ++ EE EE EE E E E EE E E+ EE +ELE E
Sbjct: 338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEE 392
Score = 34.2 bits (79), Expect = 0.27
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ EE EE EEE EE E + + E+ EE EE +E E E E E L
Sbjct: 380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTA 438
Score = 33.9 bits (78), Expect = 0.34
Identities = 23/56 (41%), Positives = 28/56 (50%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E EE+ E EE E E E+ EEE EE EE E E+ E E+ E+ E
Sbjct: 462 EGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEER 517
Score = 33.9 bits (78), Expect = 0.34
Identities = 24/66 (36%), Positives = 29/66 (43%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E EE EE EE E E E E+ E E E E EE EE + E EE EE+ +
Sbjct: 239 ADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDL 298
Query: 404 EGHCDF 409
Sbjct: 299 LAEAGL 304
Score = 33.5 bits (77), Expect = 0.40
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E E EE+ E EE E E E+ EEE EE EE E E+ E E+ E E+ E+
Sbjct: 461 VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERRED 520
Score = 33.5 bits (77), Expect = 0.46
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 341 FNGLEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ L+ + EE+EE++ E E E +EE E EE+ E+ E +E +E EE EE
Sbjct: 189 LDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEE 248
Query: 394 EEEEEKELENE 404
EE + LE E
Sbjct: 249 RREELETLEAE 259
Score = 33.5 bits (77), Expect = 0.46
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEKE 400
L E E E E EE+ E E EEE EE EE E + E +E E E
Sbjct: 541 ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAA 600
Query: 401 LENEGHCDFVKLREML-IRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ + + +LRE + D R + E RK+ LE E
Sbjct: 601 IADAED-EIERLREKREALAELNDERRERLAEKRE--RKRELEAE 642
Score = 33.1 bits (76), Expect = 0.60
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE+ E EE E E E+ EEE EE EE E E+ E E+ E EE E+ E+ +
Sbjct: 471 EEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIA 526
Score = 33.1 bits (76), Expect = 0.62
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E E E+ E + E E E +E EE E++E EE E+ EE+ +E EE +L+ E
Sbjct: 623 DERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAE 682
Score = 32.7 bits (75), Expect = 0.72
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 344 LEEEEEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
L E EE E E + E E EE+ E EE E E E+ EEE EE
Sbjct: 435 LRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEV 494
Query: 398 EKELE 402
E+ LE
Sbjct: 495 EERLE 499
Score = 32.7 bits (75), Expect = 0.78
Identities = 24/58 (41%), Positives = 28/58 (48%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
G E E EE+ E EE E E E+ EEE EE EE E E+ E E+ E E
Sbjct: 458 GQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLE 515
Score = 32.7 bits (75), Expect = 0.80
Identities = 24/63 (38%), Positives = 29/63 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE E E+ E E+ E EE E+ EE E E EE+ E EE E E E E
Sbjct: 494 VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA 553
Query: 404 EGH 406
E
Sbjct: 554 EEK 556
Score = 32.7 bits (75), Expect = 0.80
Identities = 23/59 (38%), Positives = 28/59 (47%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E E+ E EE E+ EE E E EE+ E EE E E E E EE++E E
Sbjct: 506 EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
Score = 32.3 bits (74), Expect = 1.0
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E EE E E E+ EEE EE EE E E+ E E+ E EE E+ EE E+
Sbjct: 474 RERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERR 529
Score = 30.8 bits (70), Expect = 2.9
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E+ E + E E E +E EE E++E EE E+ EE+ +E EE ++ + E +EN
Sbjct: 629 LAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEN 688
Query: 404 E 404
E
Sbjct: 689 E 689
Score = 30.4 bits (69), Expect = 4.1
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LEEE ++ E ++ + E E EE E+ +EE + EE + EE E E
Sbjct: 290 ELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349
Query: 403 N 403
+
Sbjct: 350 D 350
Score = 30.0 bits (68), Expect = 5.5
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E +E E E+ E + E E E +E EE E++E EE E+ EE+ EL
Sbjct: 615 REALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELRE 674
Query: 404 E 404
E
Sbjct: 675 E 675
Score = 29.6 bits (67), Expect = 5.8
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
F+ EE E++E EE E+ EE+ +E EE ++ + E E E EE EE E +
Sbjct: 643 FDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREA 702
Query: 401 LEN 403
LEN
Sbjct: 703 LEN 705
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 41.6 bits (98), Expect = 0.001
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E + +EE+E E EE E E E EE+ EK E
Sbjct: 137 YEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEKSYE 181
Score = 41.3 bits (97), Expect = 0.001
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 26/100 (26%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEE------------------------ 365
++L F+ + + +EE +E E
Sbjct: 79 QDLADSFEKSDKESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYE 138
Query: 366 --EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ +EE+E E EE E E E EE+ +E
Sbjct: 139 YPKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEK 178
Score = 38.2 bits (89), Expect = 0.011
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E + +EE+E E EE E E E EE+ E+ EL
Sbjct: 137 YEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEKSYEL 182
Score = 37.8 bits (88), Expect = 0.014
Identities = 15/53 (28%), Positives = 21/53 (39%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E + +EE+E E EE E E E EE+ E+ E K +
Sbjct: 137 YEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEKSYELAAKYMPR 189
Score = 36.6 bits (85), Expect = 0.033
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
I++ L SF++ + +E E EE E E E EE+ E
Sbjct: 129 INRELGSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 41.9 bits (99), Expect = 0.001
Identities = 14/56 (25%), Positives = 19/56 (33%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E E E E ++E + EE E E E E + E E E
Sbjct: 939 AQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV 994
Score = 41.6 bits (98), Expect = 0.002
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E E E ++E + EE E E E E + E E E
Sbjct: 941 EVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVT 995
Score = 40.8 bits (96), Expect = 0.002
Identities = 14/60 (23%), Positives = 18/60 (30%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E ++E + EE E E E E + E E E E E E
Sbjct: 950 VEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEA 1009
Score = 40.8 bits (96), Expect = 0.002
Identities = 14/57 (24%), Positives = 18/57 (31%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E ++E + EE E E E E + E E E E E
Sbjct: 946 AEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002
Score = 40.0 bits (94), Expect = 0.004
Identities = 14/58 (24%), Positives = 19/58 (32%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E ++E + EE E E E E + E E E E E + E
Sbjct: 951 EPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPE 1008
Score = 40.0 bits (94), Expect = 0.004
Identities = 14/60 (23%), Positives = 19/60 (31%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++E + EE E E E E + E E E E E+
Sbjct: 945 HAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPA 1004
Score = 38.9 bits (91), Expect = 0.009
Identities = 12/57 (21%), Positives = 29/57 (50%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ E E+ ++E+++ E + +E+ + ++E + EE+ +E E+EE
Sbjct: 656 SQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEER 712
Score = 38.9 bits (91), Expect = 0.009
Identities = 12/55 (21%), Positives = 18/55 (32%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E E E E ++E + EE E E E E + E +
Sbjct: 939 AQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVET 993
Score = 38.9 bits (91), Expect = 0.010
Identities = 14/60 (23%), Positives = 21/60 (35%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ +E E E E ++E + EE E E E E + E E+E
Sbjct: 935 DVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV 994
Score = 38.9 bits (91), Expect = 0.010
Identities = 14/62 (22%), Positives = 20/62 (32%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E + EE E E E E + E E E E E + E E
Sbjct: 953 QDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVE 1012
Query: 405 GH 406
+
Sbjct: 1013 HN 1014
Score = 38.9 bits (91), Expect = 0.011
Identities = 12/55 (21%), Positives = 30/55 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ E E+ ++E+++ E + +E+ + ++E + EE+ +E E+EE+
Sbjct: 658 QAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEER 712
Score = 38.1 bits (89), Expect = 0.017
Identities = 13/62 (20%), Positives = 18/62 (29%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E + EE E E E E + E E E E E + +
Sbjct: 954 DETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEH 1013
Query: 405 GH 406
H
Sbjct: 1014 NH 1015
Score = 36.6 bits (85), Expect = 0.054
Identities = 11/59 (18%), Positives = 30/59 (50%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++ E E+ ++E+++ E + +E+ + ++E + EE+ +E E+E+
Sbjct: 654 RESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEER 712
Score = 36.2 bits (84), Expect = 0.058
Identities = 11/53 (20%), Positives = 29/53 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E+ ++E+++ E + +E+ + ++E + EE+ +E E+EE ++
Sbjct: 663 EKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQ 715
Score = 36.2 bits (84), Expect = 0.058
Identities = 11/53 (20%), Positives = 29/53 (54%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E+ ++E+++ E + +E+ + ++E + EE+ +E E+EE ++
Sbjct: 663 EKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQ 715
Score = 34.6 bits (80), Expect = 0.20
Identities = 13/61 (21%), Positives = 20/61 (32%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++ + EE+ E EE + + E E E E EE E + E
Sbjct: 851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVV 910
Query: 406 H 406
Sbjct: 911 V 911
Score = 34.2 bits (79), Expect = 0.25
Identities = 15/59 (25%), Positives = 21/59 (35%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+EE+ E EE + + E E E E EE E + EE +E
Sbjct: 855 VEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVE 913
Score = 33.9 bits (78), Expect = 0.33
Identities = 14/60 (23%), Positives = 21/60 (35%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE+ E EE + + E E E E EE E + E+ + E
Sbjct: 854 QVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVE 913
Score = 33.9 bits (78), Expect = 0.35
Identities = 13/60 (21%), Positives = 19/60 (31%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + EE+ E EE + + E E E E EE E + E
Sbjct: 852 DVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVV 911
Score = 33.1 bits (76), Expect = 0.62
Identities = 15/66 (22%), Positives = 22/66 (33%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+ E EE + + E E E E EE E + EE +
Sbjct: 855 VEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVET 914
Query: 405 GHCDFV 410
H + +
Sbjct: 915 THPEVI 920
Score = 33.1 bits (76), Expect = 0.64
Identities = 12/53 (22%), Positives = 18/53 (33%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
++ + EE+ E EE + + E E E E EE E
Sbjct: 851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAE 903
Score = 31.5 bits (72), Expect = 1.7
Identities = 11/56 (19%), Positives = 29/56 (51%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ +++ E E ++ E E+ ++E+++ E + +E+ + ++E K L E
Sbjct: 645 QAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVE 700
Score = 31.2 bits (71), Expect = 2.5
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 26/88 (29%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEE-------------EEEEEEEEEEEEEEEEEEE 385
F+G EE + +E+ + E + E +++ E + + E E E
Sbjct: 578 ALFSGGEETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENRE 637
Query: 386 E-------------EEEEEEEEEEEEKE 400
E E E ++ E EK
Sbjct: 638 ENRRNRRQAQQQTAETRESQQAEVTEKA 665
Score = 29.2 bits (66), Expect = 9.5
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E EE + +++ E E ++ E E+ ++E+++ E + +EK
Sbjct: 634 ENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEK 687
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 41.5 bits (98), Expect = 0.001
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ + E+ + +E E +E+ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQR 50
Score = 40.7 bits (96), Expect = 0.002
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
L+ + E+ + +E E +E+ EEE + + EEE + +
Sbjct: 3 LKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 40.3 bits (95), Expect = 0.002
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ + E+ + +E E +E+ EEE + + EEE + ++ L
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVL 52
Score = 40.3 bits (95), Expect = 0.002
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ + E+ + +E E +E+ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 40.3 bits (95), Expect = 0.002
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ + E+ + +E E +E+ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 40.3 bits (95), Expect = 0.002
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ + E+ + +E E +E+ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 40.3 bits (95), Expect = 0.002
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ + E+ + +E E +E+ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 40.3 bits (95), Expect = 0.002
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ + E+ + +E E +E+ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 40.3 bits (95), Expect = 0.002
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ + E+ + +E E +E+ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 39.6 bits (93), Expect = 0.004
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+ L E+ + +E E +E+ EEE + + EEE + +
Sbjct: 6 HDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 39.6 bits (93), Expect = 0.004
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + E+ + +E E +E+ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 39.2 bits (92), Expect = 0.005
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ + E+ + +E E +E+ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 32.2 bits (74), Expect = 0.68
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
+ E E +E+ EEE + + EEE + +
Sbjct: 12 ADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 40.9 bits (96), Expect = 0.001
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E+E +EE+E E+ E+ E E + E+ E + E+ E+E + EEE+E
Sbjct: 30 ETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERE 83
Score = 40.6 bits (95), Expect = 0.001
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK---EL 401
E E+E +EE+E E+ E+ E E + E+ E + E+ E+E + EEE E+ E
Sbjct: 30 ETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEA 89
Query: 402 ENEGHCD 408
+ EG+
Sbjct: 90 KQEGYEA 96
Score = 39.4 bits (92), Expect = 0.004
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ + E E+E +EE+E E+ E+ E E + E+ E + E+ E+E + EEE
Sbjct: 23 RQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEER 82
Query: 399 KELENE 404
+ L E
Sbjct: 83 ERLIQE 88
Score = 35.9 bits (83), Expect = 0.040
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 345 EEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+E +EE+E E+ E+ E E E+ E + E+ E+E + EEE E +E ++
Sbjct: 32 EQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQ 91
Query: 400 ELENEG 405
E G
Sbjct: 92 EGYEAG 97
Score = 35.9 bits (83), Expect = 0.042
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L +EE+E E+ E+ E E + E+ E + E+ E+E + EEE E +E K+
Sbjct: 35 LADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQ 91
Score = 30.2 bits (68), Expect = 3.3
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLI 417
E E+E +EE+E E+ E+ E E + E+ E + +E + + + RE LI
Sbjct: 30 ETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLI 86
Score = 29.8 bits (67), Expect = 3.9
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE+ E E + E+ E + E+ E+E + EEE E +E ++E E + E E
Sbjct: 46 LEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESE 104
Score = 29.4 bits (66), Expect = 6.2
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
F + E+ E E + E+ E + E+ E+E + EEE E +E ++E E
Sbjct: 42 FEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEA 96
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 37.6 bits (88), Expect = 0.001
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 318 MQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEE 372
+ NP D Y + E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 22 SSVILPRNPL--SQDLPGLDYDYDSDAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 374
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 375
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 35.7 bits (83), Expect = 0.006
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E EEEEE E+ E E+EE+EEE+++ +++
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMDG 75
Score = 35.3 bits (82), Expect = 0.008
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E EEEEE E+ E E+EE+EEE++++
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDM 73
Score = 33.0 bits (76), Expect = 0.058
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E EEEEE E+ E E+EE+EEE+ + + +G
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMDG 75
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 41.2 bits (96), Expect = 0.001
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEEEEEEEEE 393
++E+E EEEEE + E E ++ E+E+ + ++ E E EEEE E
Sbjct: 195 KRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSES 254
Query: 394 EEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E +E+++ +N+G K+R+ + + H + + +++
Sbjct: 255 ESDEDEDEDNKG-----KIRKRKTDDAKKSRKPHIHIEYEQERENEKIPAV 300
Score = 33.9 bits (77), Expect = 0.20
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEEEEKE 400
E E+ ++E+E EEEEE + E E ++ E+E+ + + E E EEE+
Sbjct: 192 EREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEES 251
Query: 401 LENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E+E D + + IR D +K+ H + ++ E E
Sbjct: 252 SESESDEDEDEDNKGKIRKRKTDDAKKSRKPHIHIEYEQERENE 295
Score = 32.7 bits (74), Expect = 0.56
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E EEEE E E +E+E+E+ + + + + ++ ++ + E E+E E +++
Sbjct: 241 METSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKPHIHIEYEQERENEKIPAV 300
Query: 405 GH 406
H
Sbjct: 301 QH 302
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 37.0 bits (86), Expect = 0.004
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E +E EEEE+EEE EEE +
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDD 101
Score = 35.1 bits (81), Expect = 0.018
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E +E EEEE+EEE EE+ ++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDDML 104
Score = 30.1 bits (68), Expect = 1.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 343 GLEEEEEEEEEEEEEEEEEE 362
E EEEE+EEE EEE +++
Sbjct: 83 ADEAEEEEKEEEAEEESDDD 102
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 39.7 bits (93), Expect = 0.001
Identities = 10/50 (20%), Positives = 15/50 (30%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
FN E + E ++++ E E E EEE
Sbjct: 106 FNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 39.3 bits (92), Expect = 0.001
Identities = 10/54 (18%), Positives = 15/54 (27%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
LE E + E ++++ E E E EEE
Sbjct: 102 KLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 38.9 bits (91), Expect = 0.002
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E + E ++++ E E E EEE
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 38.9 bits (91), Expect = 0.002
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E + E ++++ E E E EEE
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 38.1 bits (89), Expect = 0.003
Identities = 7/49 (14%), Positives = 13/49 (26%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + E ++++ E E E EE+
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 35.1 bits (81), Expect = 0.038
Identities = 8/59 (13%), Positives = 15/59 (25%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + + E E + E ++++ E E E E
Sbjct: 97 EPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 41.6 bits (97), Expect = 0.001
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + EE+ E+ E EE+++++EE + +KELE E
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE 509
Score = 41.2 bits (96), Expect = 0.002
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE + EE+ E+ E EE+++++EE + ++E ELE +G
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQG 512
Score = 38.5 bits (89), Expect = 0.011
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 22/80 (27%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------------- 388
EE + EE+ E+ E EE+++++EE + ++E E E
Sbjct: 466 EETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDV 525
Query: 389 ------EEEEEEEEEEKELE 402
+ + +EEEEEK+L+
Sbjct: 526 NKSKNKKRKVDEEEEEKKLK 545
Score = 38.1 bits (88), Expect = 0.015
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ EE + EE+ E+ E EE+++++EE + ++E E E
Sbjct: 455 SYDPRASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE 509
Score = 37.7 bits (87), Expect = 0.019
Identities = 13/62 (20%), Positives = 28/62 (45%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
EE + EE+ E+ E EE+++++EE + ++E E E + + +
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSET 518
Query: 410 VK 411
+
Sbjct: 519 SE 520
Score = 37.7 bits (87), Expect = 0.020
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EE + EE+ E+ E EE+++++EE + ++E E E
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE 509
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 39.2 bits (92), Expect = 0.001
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 8/70 (11%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+EE+ EE+E E+EE+E +EE+E+E EE E+ EE E+ + + ++E+ +
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYD 73
Query: 396 EEEKELENEG 405
EE KE E
Sbjct: 74 EELKEQERWD 83
Score = 39.2 bits (92), Expect = 0.001
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLRE 414
EE+ EE+E E+EE+E +EE+E+E + ++EE E+ EE E+ K + D E
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDE 74
Query: 415 ML 416
L
Sbjct: 75 EL 76
Score = 35.4 bits (82), Expect = 0.029
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMED 423
EE+ EE+E E+EE+E +EE+E+E + ++EE EK LE L + ++
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDE 74
Query: 424 M-REKTH 429
+E+
Sbjct: 75 ELKEQER 81
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 40.4 bits (94), Expect = 0.001
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ + + ++E+ + +E +E + EE++ +EE+EEEE EEE ++EE + +
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 40.0 bits (93), Expect = 0.002
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
G + + + ++E+ + +E +E + EE++ +EE+EEEE EEE ++EE + ++
Sbjct: 187 GGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 39.3 bits (91), Expect = 0.004
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L + + + ++E+ + +E +E + EE++ +EE+EEEE EEE ++EE + +
Sbjct: 186 LGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTD 242
Score = 39.3 bits (91), Expect = 0.004
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + + ++E+ + +E +E + EE++ +EE+EEEE EEE ++EE + ++
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 38.9 bits (90), Expect = 0.004
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ + + ++E+ + +E +E + EE++ +EE+EEEE EEE K+ E +G
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQG 240
Score = 33.9 bits (77), Expect = 0.21
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N +EE + + + + ++E+ + +E +E + EE++ +EE+EEEE E+E
Sbjct: 174 NNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEA 233
Query: 402 ENE 404
+ E
Sbjct: 234 KQE 236
Score = 31.6 bits (71), Expect = 1.2
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 342 NGLEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
N + E EE + + + ++E+ + +E +E + EE++ +
Sbjct: 162 NQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQ 221
Query: 394 EEEEEKELENEG 405
EE+EE+E+E E
Sbjct: 222 EEQEEEEVEEEA 233
>gnl|CDD|224581 COG1667, COG1667, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 254
Score = 40.6 bits (95), Expect = 0.001
Identities = 22/78 (28%), Positives = 30/78 (38%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N E EEE E E EE + E EE E+ E EE E +E +
Sbjct: 108 NKDECVLSVPITEEEVENEMEELKSSEREELLEKYGIRVPEIEEIERILDEAVGSDYFSE 167
Query: 402 ENEGHCDFVKLREMLIRT 419
E E L+++ I+
Sbjct: 168 EIEEPSREELLKKLGIKE 185
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 38.7 bits (90), Expect = 0.002
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+N ++ E+E E E EE EE+ E +E + E E++EE+E +
Sbjct: 2 YNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 36.8 bits (85), Expect = 0.007
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ + E+E E E EE EE+ E +E + E E++EE+E + K
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPRK 55
Score = 36.8 bits (85), Expect = 0.007
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ + E+E E E EE EE+ E +E + E E++EE+E ++
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 36.0 bits (83), Expect = 0.015
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ + E+E E E EE EE+ E +E + E E++EE+E +
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 36.0 bits (83), Expect = 0.015
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ + E+E E E EE EE+ E +E + E E++EE+E +
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 36.0 bits (83), Expect = 0.015
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ + E+E E E EE EE+ E +E + E E++EE+E +
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 35.6 bits (82), Expect = 0.021
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + E+E E E EE EE+ E +E + E E++EE++ ++
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 32.5 bits (74), Expect = 0.21
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 333 YSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
Y+ D Y + E E EE EE+ E +E + E E++EE+E +
Sbjct: 2 YNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 32.1 bits (73), Expect = 0.32
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ + E+E E E EE EE+ E +E + E ++ E +
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQE 48
Score = 31.8 bits (72), Expect = 0.44
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ + E+E E E EE EE+ E +E + E E + E E
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEP 49
Score = 30.6 bits (69), Expect = 1.0
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+ + E+E E E EE EE+ E +E + + + E
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQ 47
Score = 30.2 bits (68), Expect = 1.4
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLRE 414
+ + E+E E E EE EE+ E E +G + +E
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKE 45
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 40.5 bits (95), Expect = 0.002
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 30/91 (32%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEE----------- 382
+ + +EE+EE E+E EEE E + + E E E EE
Sbjct: 108 YEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADV 167
Query: 383 ------------EEEEEEEEEEEEEEEEKEL 401
E++EEEEEEEE+E K L
Sbjct: 168 DVNSMLEALFRREKKEEEEEEEEDEALIKSL 198
Score = 37.4 bits (87), Expect = 0.020
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E++EEEEEEEE+E + E EE+ ++E+ E++EE+ + K
Sbjct: 178 RREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPK 230
Score = 37.0 bits (86), Expect = 0.021
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E++EEEEEEEE+E + E EE+ ++E+ E++EE+ +
Sbjct: 178 RREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKS 231
Score = 37.0 bits (86), Expect = 0.022
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
LE E++EEEEEEEE+E + E EE+ ++E+ E++EE+ +
Sbjct: 173 LEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSP 229
Score = 37.0 bits (86), Expect = 0.025
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E ++ +EE+EE E+E EEE + ++ E + + E E E EE KEL
Sbjct: 107 NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKEL-QSRRA 165
Query: 408 DFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
D ++ M E R + ++ EEE
Sbjct: 166 DV----------DVNSMLEALFRREKK--EEEEEEEE 190
Score = 36.6 bits (85), Expect = 0.028
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N + E E++EEEEEEEE+E + E EE+ ++E+ E++EE+ +
Sbjct: 169 VNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPS 228
Score = 34.7 bits (80), Expect = 0.14
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+EEEEEEEE+E + E EE+ ++E+ E++EE+ +
Sbjct: 179 REKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSP 229
Score = 33.6 bits (77), Expect = 0.29
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
F ++EEEEEEEE+E + E EE+ ++E+ E++EE+ +
Sbjct: 175 ALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSP 229
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 40.8 bits (96), Expect = 0.002
Identities = 21/67 (31%), Positives = 26/67 (38%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
K N L E E E + E E EE E ++E E E E E+ EE
Sbjct: 207 SKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAV 266
Query: 398 EKELENE 404
+ LE E
Sbjct: 267 REILEIE 273
Score = 39.3 bits (92), Expect = 0.007
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ EE E+ E E + EE + E+ E EE + EE E +EE E+ E+ +ELE
Sbjct: 81 FILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELE 140
Query: 403 NEGHCDFV 410
+ DF
Sbjct: 141 PLAYLDFD 148
Score = 36.6 bits (85), Expect = 0.050
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ EE + E+ E EE + EE E +EE E+ E+ EE E + + L
Sbjct: 94 LKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLLR 153
Query: 404 EGHCDFV 410
V
Sbjct: 154 GLKFLLV 160
Score = 34.6 bits (80), Expect = 0.16
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
LEE + E+ E EE + EE E +EE E+ E+ EE E
Sbjct: 93 ELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELE 140
Score = 33.5 bits (77), Expect = 0.45
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E EE E+ E E + EE + E+ E EE + EE E ++ELE
Sbjct: 74 KGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELE 130
Score = 32.7 bits (75), Expect = 0.78
Identities = 16/56 (28%), Positives = 21/56 (37%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E + E E EE E ++E E E E E+ EE E E E+
Sbjct: 221 PEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKAL 276
Score = 31.9 bits (73), Expect = 1.3
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
F+G E E EE E ++E E E E E+ EE E E E+ + +
Sbjct: 223 FDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKALGDVLSK 282
Query: 401 LENEGHC 407
L +
Sbjct: 283 LARTEYT 289
Score = 31.6 bits (72), Expect = 1.7
Identities = 16/56 (28%), Positives = 21/56 (37%)
Query: 333 YSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
FD + E EE E ++E E E E E+ EE E E E+
Sbjct: 220 VPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKA 275
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 40.7 bits (96), Expect = 0.002
Identities = 13/43 (30%), Positives = 30/43 (69%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
N L++ ++EEEE +E++++E++ + ++++EEE + E E
Sbjct: 220 NELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 39.6 bits (93), Expect = 0.005
Identities = 13/47 (27%), Positives = 31/47 (65%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++ ++EEEE +E++++E++ + ++++EEE + E E KE+
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEV 269
Score = 39.2 bits (92), Expect = 0.007
Identities = 10/43 (23%), Positives = 28/43 (65%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++ ++EEEE +E++++E++ + ++++EEE + E +
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTST 265
Score = 39.2 bits (92), Expect = 0.007
Identities = 11/45 (24%), Positives = 29/45 (64%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
++ ++EEEE +E++++E++ + ++++EEE + E E +
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIK 267
Score = 38.8 bits (91), Expect = 0.008
Identities = 11/45 (24%), Positives = 30/45 (66%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ ++EEEE +E++++E++ + ++++EEE + E E ++
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIK 267
Score = 38.1 bits (89), Expect = 0.013
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
++ ++EEEE +E++++E++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.1 bits (89), Expect = 0.013
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
++ ++EEEE +E++++E++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.1 bits (89), Expect = 0.013
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
++ ++EEEE +E++++E++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.1 bits (89), Expect = 0.013
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
++ ++EEEE +E++++E++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.1 bits (89), Expect = 0.013
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
++ ++EEEE +E++++E++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.1 bits (89), Expect = 0.013
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
++ ++EEEE +E++++E++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.1 bits (89), Expect = 0.013
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
++ ++EEEE +E++++E++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.1 bits (89), Expect = 0.013
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
++ ++EEEE +E++++E++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.1 bits (89), Expect = 0.013
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
++ ++EEEE +E++++E++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 31.1 bits (71), Expect = 2.2
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNME 422
++ ++EEEE +E++++E++ + + ++E D R I+ E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSE 271
>gnl|CDD|217956 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal
putative domain.
Length = 165
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/52 (38%), Positives = 24/52 (46%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
EEEE E EE EE E + EE E+E +E+EE E E D
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSDD 59
Score = 37.4 bits (87), Expect = 0.008
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLRE 414
EEEE E EE EE E + EE E+E +E+EE +E E F K ++
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSDDKTFQKFKK 67
Score = 36.2 bits (84), Expect = 0.017
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EEEE E EE EE E + EE E+E +E+EE +E E+ + ++K
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSDDKT 61
Score = 35.5 bits (82), Expect = 0.034
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ EEEE E EE EE E + EE E+E +E+EE +E E+ + +
Sbjct: 2 DSQFVFPEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSD 58
Score = 35.1 bits (81), Expect = 0.040
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EEEE E EE EE E + EE E+E +E+EE +E E+ K
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSD 58
Score = 33.2 bits (76), Expect = 0.22
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE E EE EE E + EE E+E +E+EE +E E+ + +++ +K +
Sbjct: 10 EEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSDDKTFQKFKKRV 69
Query: 405 GHC 407
Sbjct: 70 ARN 72
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 39.3 bits (92), Expect = 0.002
Identities = 20/63 (31%), Positives = 41/63 (65%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E E E+E + E+E E EEEE++E+++++E ++E++E+++++EK +E +G
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Query: 406 HCD 408
Sbjct: 183 SKK 185
Score = 37.4 bits (87), Expect = 0.010
Identities = 18/56 (32%), Positives = 37/56 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E E E E+E + E+E E EEEE++E+++++E ++E++E++++KE
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 37.4 bits (87), Expect = 0.010
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 315 ILAMQKVPGSNPTIDKNLYS-FFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
I VP K L FF Y E E E E+E + E+E E EE
Sbjct: 92 IYDKVVVPRPPVPQPKGLKMRFFPTGYGAPDGPPSELGSESETSEKETTAKVEKEAEVEE 151
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE++E+++++E ++E++E+++++E+
Sbjct: 152 EEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Score = 37.4 bits (87), Expect = 0.011
Identities = 17/59 (28%), Positives = 39/59 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E E E+E + E+E E EEEE++E+++++E ++E++E+++++E+ + +
Sbjct: 125 PSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 35.8 bits (83), Expect = 0.038
Identities = 19/57 (33%), Positives = 41/57 (71%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
G E E E+E + E+E E EEEE++E+++++E ++E++E+++++E+ E + +K
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Score = 35.1 bits (81), Expect = 0.062
Identities = 17/60 (28%), Positives = 39/60 (65%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E E+E + E+E E EEEE++E+++++E ++E++E+++++E+ E + +
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 40.8 bits (95), Expect = 0.002
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EEEEE E EE+EE E+E + +E+ EEEEEEE K +++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 40.0 bits (93), Expect = 0.004
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EEEEE E EE+EE E+E + +E+ EEEEEEE + ++ +LE
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLE 185
Score = 39.2 bits (91), Expect = 0.007
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEEEE E EE+EE E+E + +E+ EEEEEEE + ++ + E + ++ +++ G
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLESQTKKPSVKDNG 197
Score = 38.5 bits (89), Expect = 0.012
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
EEEEE E EE+EE E+E + +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 38.5 bits (89), Expect = 0.012
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
EEEEE E EE+EE E+E + +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 38.5 bits (89), Expect = 0.012
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
EEEEE E EE+EE E+E + +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 38.5 bits (89), Expect = 0.012
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
LEEEEE E EE+EE E+E + +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 34.2 bits (78), Expect = 0.26
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEK 399
++EE E + E + + EEEEE E EE+EE E+E +E+ EEE+
Sbjct: 112 DDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEE 171
Query: 400 ELENEGHCDFVKL 412
E E + DF+ L
Sbjct: 172 EEELKTMKDFIDL 184
Score = 32.3 bits (73), Expect = 0.88
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
D + + L +++EE E + E + + EEEEE E EE+EE E+
Sbjct: 98 DVRSRSTLWSLFHDDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEK 157
Query: 397 EEKELENEG 405
E ++ +E
Sbjct: 158 EPGKVVDEK 166
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 40.5 bits (95), Expect = 0.003
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ LEE ++ +E EE E+ E+ E+ E +EE ++E ++ ++ E +
Sbjct: 445 EEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVD 504
Query: 397 EEKELENEG--HCDFVKLREMLIRTN 420
LE G + KL +L + N
Sbjct: 505 TYLLLEELGINEETYEKLEALLAKKN 530
Score = 38.5 bits (90), Expect = 0.012
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE + EE ++ +E EE E+ E+ E+ E +EE ++E ++ +K E
Sbjct: 443 LEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPE 502
Score = 38.5 bits (90), Expect = 0.013
Identities = 19/78 (24%), Positives = 31/78 (39%)
Query: 323 GSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
I K+L F EE E+ E+ E+ E +EE ++E ++ ++ E
Sbjct: 443 LEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPE 502
Query: 383 EEEEEEEEEEEEEEEEKE 400
+ EE EE E
Sbjct: 503 VDTYLLLEELGINEETYE 520
Score = 37.8 bits (88), Expect = 0.023
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 16/119 (13%)
Query: 314 NILAMQKVPG------SNPTIDKNLYSFFDCKYFNGLEEE----------EEEEEEEEEE 357
N L M K G + I +FF + G EE EEE + E
Sbjct: 394 NALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKFLEEEAILKSLE 453
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREML 416
E ++ +E EE E+ E+ E+ E +EE ++E K+++ D L E L
Sbjct: 454 EFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEEL 512
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 40.3 bits (95), Expect = 0.003
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE + EE + + E +++EE E++E+E +E+ +E+EEE EE E+ +ELE
Sbjct: 81 LERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELE 139
Score = 35.3 bits (82), Expect = 0.11
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEEKEL 401
LE +EE + E E E +E E + E + EE + + E +++EE E++EKEL
Sbjct: 54 LEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKEL 113
Query: 402 EN 403
N
Sbjct: 114 SN 115
Score = 34.5 bits (80), Expect = 0.17
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEEE 397
+E +++EE E++E+E +E+ +E+EEE EE E+ EE E +EE +E
Sbjct: 94 RKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEIL 153
Query: 398 EKELENEGHCDFVKLREMLIRTNMEDMREK 427
+E+E E + LI+ E+ +E+
Sbjct: 154 LEEVEEEARHE----AAKLIKEIEEEAKEE 179
Score = 34.1 bits (79), Expect = 0.21
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E E E +E E + E + EE + + E +++EE E++E+E +EK L+
Sbjct: 63 LRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDE 122
Query: 404 E 404
+
Sbjct: 123 K 123
Score = 34.1 bits (79), Expect = 0.26
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------------EEEEEE 383
K LE++E+E +E+ +E+EEE EE E+ EE E EE EEE
Sbjct: 101 KKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEE 160
Query: 384 EEEE------EEEEEEEEEEEKE 400
E E EEE +EE +K+
Sbjct: 161 ARHEAAKLIKEIEEEAKEEADKK 183
Score = 33.0 bits (76), Expect = 0.47
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 20/80 (25%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------------EEEE 386
+ EE E++E+E +E+ +E+EEE EE E+ EE E EE E
Sbjct: 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVE 158
Query: 387 EEEEEE------EEEEEEKE 400
EE E E EEE KE
Sbjct: 159 EEARHEAAKLIKEIEEEAKE 178
Score = 31.8 bits (73), Expect = 1.3
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
EE + EE ++E E ++E E +EE + E E E +E E + LE
Sbjct: 28 GSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERR--- 84
Query: 408 DFVKLREMLIRTNMEDM--REKTHCRHYE--LYRKKRLEEESN 446
+ RE + ME + +E+ + + ++K L+E+
Sbjct: 85 --LLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125
Score = 31.0 bits (71), Expect = 2.0
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEKE 400
+EE ++E E ++E E +EE + E E E +E E + E + EE + + E
Sbjct: 38 IEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKME 97
Query: 401 LENEGHCDFVKLREMLIRTNME-DMREKTHCRHYELYRKKRLEEESN 446
++ + K + L D +E+ R + LE S
Sbjct: 98 SLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQR-EELERISG 143
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 40.3 bits (95), Expect = 0.003
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
GL ++E E ++ EE E+++ +E E + E EE E+ +EE ++ E +K+
Sbjct: 500 GLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKV 559
Query: 403 NEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVIGS 450
E L+E L + E++ KT + L++ IG
Sbjct: 560 EEAIEW---LKEELEGEDKEEIEAKT----------EELQKVVQPIGE 594
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 40.6 bits (96), Expect = 0.003
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 328 IDKNLYSFFDCKYFN-GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+ K +Y G + + E ++ +EE E+ E ++EEE+E+ +E E ++ E
Sbjct: 139 LKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLE 198
Query: 387 EEEEEEEEEEEEKE 400
E++++ + + KE
Sbjct: 199 AEKKKQSKNFDPKE 212
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 37.7 bits (88), Expect = 0.003
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
L+E +E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 86 LDEIDERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 37.7 bits (88), Expect = 0.003
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E E + +EE++ +EEE + + EE +E E E+K+
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 36.5 bits (85), Expect = 0.010
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E E + +EE++ +EEE + + EE +E E E++K
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.018
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E E + +EE++ +EEE + + EE +E E+E +
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 34.6 bits (80), Expect = 0.040
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+E E + +EE++ +EEE + + EE KE E E
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKK 125
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 40.2 bits (94), Expect = 0.003
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
L E E + E E EEE +E ++ + ++ EE ++ EE
Sbjct: 266 LPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 39.4 bits (92), Expect = 0.006
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E + E E EEE +E ++ + ++ EE ++ EE + E +L +
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDN 322
Score = 39.0 bits (91), Expect = 0.007
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E + E E EEE +E ++ + ++ EE ++ EE +
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVE 316
Score = 38.6 bits (90), Expect = 0.009
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E + E E EEE +E ++ + ++ EE ++ EE + E + + L
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDNILA 325
Score = 34.0 bits (78), Expect = 0.24
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFV 410
E E + E E EEE +E ++ + ++ E ++ + +
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELM 311
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 39.3 bits (92), Expect = 0.003
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E E++E EE E+ EE+ ++E EE EE E EE+ ++EEEE + E+K E E
Sbjct: 1 EEAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELE 60
Query: 405 GHCDFVKLREMLIRTNMEDMREK 427
++ E + +
Sbjct: 61 EENRRLEEEAAASEEERERLEAE 83
Score = 39.0 bits (91), Expect = 0.005
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LEE EE E EE+ ++EEEE + E++ +E EEE EEE EEE E E + E
Sbjct: 28 LEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDE 86
Score = 38.2 bits (89), Expect = 0.009
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E++ +E EEE EEE EEE E E E +E E + EEE E++E E ++L+ E
Sbjct: 53 EKKADELEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQEL 112
Query: 406 HCDFVKLREMLIRTNME 422
+E R E
Sbjct: 113 RE----AQEAHERARQE 125
Score = 37.0 bits (86), Expect = 0.018
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E EE EE E EE+ ++EEEE + E++ +E EEE EEE EEE E E E
Sbjct: 25 QKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAE 83
Score = 37.0 bits (86), Expect = 0.021
Identities = 24/58 (41%), Positives = 32/58 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE EE+ ++EEEE + E++ +E EEE EEE EEE E E E +E E
Sbjct: 36 LELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEATAEVAK 93
Score = 36.6 bits (85), Expect = 0.026
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE+ ++E EE EE E EE+ ++EEEE + E++ +E EEE EEE E
Sbjct: 17 MEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEE 76
Score = 36.3 bits (84), Expect = 0.032
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
LEE E+ EE+ ++E EE EE E EE+ ++EEEE + E++ +E EEE +
Sbjct: 10 LEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRR 65
Score = 35.1 bits (81), Expect = 0.070
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE E E E +E E + EEE E++E E + ++E E +E E +E E
Sbjct: 73 SEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQELLEAAAA 132
Query: 405 GH 406
Sbjct: 133 PT 134
Score = 32.8 bits (75), Expect = 0.43
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEE 393
LEEE E++E E + ++E E +E E +E E E+ E ++
Sbjct: 94 LEEEREKKEAETRQLQQELREAQEAHERARQELLEAAAAPTAPPHVAAPVNGEQLEPDDN 153
Query: 394 EEEEEKELENEGHCD 408
EE +LE +
Sbjct: 154 GEEASADLETDPDMK 168
Score = 30.5 bits (69), Expect = 2.5
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEE----EEE 396
LEEE EEE EEE E E E +E E EEE E++E E + ++E +E
Sbjct: 59 LEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEA 118
Query: 397 EEKELE 402
E+ +
Sbjct: 119 HERARQ 124
>gnl|CDD|218576 pfam05395, DARPP-32, Protein phosphatase inhibitor 1/DARPP-32.
This family consists of several mammalian protein
phosphatase inhibitor 1 (IPP-1) and dopamine- and
cAMP-regulated neuronal phosphoprotein (DARPP-32)
proteins. Protein phosphatase inhibitor-1 is involved in
signal transduction and is an endogenous inhibitor of
protein phosphatase-1. It has been demonstrated that
DARPP-32, if phosphorylated, can inhibit
protein-phosphatase-1. DARPP-32 has a key role in many
neurotransmitter pathways throughout the brain and has
been shown to be involved in controlling receptors, ion
channels and other physiological factors including the
brain's response to drugs of abuse, such as cocaine,
opiates and nicotine. DARPP-32 is reciprocally regulated
by the two neurotransmitters that are most often
implicated in schizophrenia - dopamine and glutamate.
Dopamine activates DARPP-32 through the D1 receptor
pathway and disables DARPP-32 through the D2 receptor.
Glutamate, acting through the N-methyl-d-aspartate
receptor, renders DARPP-32 inactive. A mutant form of
DARPP-32 has been linked with gastric cancers.
Length = 170
Score = 38.3 bits (89), Expect = 0.004
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE + EEE+E + +E E E E ++ EE ++ + E LE H
Sbjct: 95 GSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWH 152
Score = 36.0 bits (83), Expect = 0.026
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
L+ + EE + EEE+E + +E E E E ++ EE ++ + E
Sbjct: 91 LQSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSE 144
Score = 35.3 bits (81), Expect = 0.048
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ EE + EEE+E + +E E E E ++ EE ++ + E
Sbjct: 90 HLQSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSE 144
Score = 33.3 bits (76), Expect = 0.18
Identities = 15/68 (22%), Positives = 26/68 (38%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ E + EEE+E + +E E E E ++ EE ++ + E E
Sbjct: 92 QSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVGLEGPW 151
Query: 398 EKELENEG 405
+ E G
Sbjct: 152 HRTAELSG 159
Score = 31.0 bits (70), Expect = 1.1
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 343 GLEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EEE+E + +E E E E ++ EE ++ + E E E
Sbjct: 100 NQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWHRTAELSG 159
Query: 399 KELENEG 405
E E +
Sbjct: 160 PEQEGDS 166
Score = 29.1 bits (65), Expect = 4.8
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E E ++ EE ++ + E E E E+E + EE
Sbjct: 119 TGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWHRTAELSGPEQEGDSEEPS 170
Score = 29.1 bits (65), Expect = 5.2
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
G E E E ++ EE ++ + E E E E+E + EE
Sbjct: 116 GYPTGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWHRTAELSGPEQEGDSEE 168
Score = 29.1 bits (65), Expect = 5.2
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E E E ++ EE ++ + E E E E+E + EE
Sbjct: 119 TGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWHRTAELSGPEQEGDSEE 168
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 37.7 bits (88), Expect = 0.004
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+E +EEEE E++ ++ +EE EEEE+ E+ E + E + +E+ ++E + +
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESDYE 60
Query: 400 ELE 402
EL
Sbjct: 61 ELS 63
Score = 37.3 bits (87), Expect = 0.007
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLR 413
E+E +EEEE E++ ++ +EE EEEE+ E+ + E + E + +G D
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESDYE 60
Query: 414 EMLIRT 419
E+
Sbjct: 61 ELSAAA 66
Score = 36.9 bits (86), Expect = 0.008
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+E +EEEE E++ ++ +EE EEEE+ E+ + E + E + +E L++E
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDES 57
Score = 32.7 bits (75), Expect = 0.27
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 25/83 (30%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------------------------EEEEEE 380
E+E +EEEE E++ ++ +EE EEEE+ E+ +E + E
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESDYE 60
Query: 381 EEEEEEEEEEEEEEEEEEKELEN 403
E E ++ L
Sbjct: 61 ELSAAARRAAEARLNRRDRLLRR 83
Score = 28.1 bits (63), Expect = 8.0
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L+EE EEEE+ E+ + E + E + +E+ ++E + EE E L
Sbjct: 17 LDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESDYEELSAAARRAAEARLN 75
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 39.2 bits (92), Expect = 0.004
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
LY D Y+ +EE+ E E E E+E E+ EE +E ++E+ + EE+E EE+
Sbjct: 156 AELYKRIDADYYGYRDEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDI 215
Query: 390 EEEEEEEEE 398
+++ E
Sbjct: 216 YIPLDDDAE 224
Score = 36.9 bits (86), Expect = 0.020
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
ID + Y + D EE+ E E E E+E E+ EE +E ++E+ + EE+E
Sbjct: 162 IDADYYGYRD----------EEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDER 211
Query: 388 EEEEEEEEEEEKE 400
EE+ +++ E
Sbjct: 212 EEDIYIPLDDDAE 224
Score = 36.1 bits (84), Expect = 0.032
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+EE+ E E E E+E E+ EE +E ++E+ + EE+E EE+ L+++
Sbjct: 170 RDEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDA 223
Score = 34.2 bits (79), Expect = 0.17
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E+E E+ EE +E ++E+ + EE+E EE+ +++ E +EE E+ L
Sbjct: 184 REKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHVPVPTQEEVEEWL 241
Score = 33.8 bits (78), Expect = 0.21
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
+EE+ E E E E+E E+ EE +E ++E+ + EE+E EE+ ++ +
Sbjct: 170 RDEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHV 229
Query: 413 R 413
Sbjct: 230 P 230
Score = 33.1 bits (76), Expect = 0.36
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+EE+ E E E E+E E+ EE +E ++E+ + EE+E EE+ ++
Sbjct: 170 RDEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAE 224
Score = 32.7 bits (75), Expect = 0.49
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 351 EEEEEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+E E+ +E+ + E + +EE+ E E E E+E E+ EE KE++
Sbjct: 141 EKEPEDRKEKPRKSRAELYKRIDADYYGYRDEEDGVLLEYEAEREKELIEKLVEEWKEIQ 200
Query: 403 NEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+E RE I ++D E H + ++ +EE
Sbjct: 201 DEDLQAEEDEREEDIYIPLDDDAEFV--AHVPVPTQEEVEEW 240
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 38.9 bits (91), Expect = 0.004
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ EE EE+EE E E+ E EE EE E EN
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNEWEN 249
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.3 bits (87), Expect = 0.015
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
D ++ EE EE+EE E E+ E EE EE E
Sbjct: 200 DLFFWRDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 36.2 bits (84), Expect = 0.033
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE EE+EE E E+ E EE EE NE
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 34.6 bits (80), Expect = 0.12
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
+ EE EE+EE E E+ E EE +E + ++
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNEW 247
Score = 32.3 bits (74), Expect = 0.54
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ EE EE+EE E E+ E EE E+ +
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAAN 244
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 37.3 bits (85), Expect = 0.004
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 323 GSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
GS+P +D + S KY E+E + E ++E E+E++ E+ E E+E++ E+
Sbjct: 27 GSSPYMDVRIVS---NKYDKIFISNEDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKP 83
Query: 383 EEEEEEEEEEEEEEEEKELENEGHCD 408
E E+E++ E+ E E+EKE E+ D
Sbjct: 84 ENEDEKKPEKPENEDEKEFEDSDASD 109
Score = 31.5 bits (70), Expect = 0.43
Identities = 18/54 (33%), Positives = 36/54 (66%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
E+E + E ++E E+E++ E+ E E+E++ E+ E E+E++ ++ ENE +F
Sbjct: 49 EDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEF 102
Score = 31.1 bits (69), Expect = 0.59
Identities = 17/53 (32%), Positives = 39/53 (73%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+++E E+E++ E+ E E+E++ E+ E E+E++ E+ E E+E+E E+ + +++
Sbjct: 59 IKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDKK 111
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 40.2 bits (94), Expect = 0.004
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E++EE++EE+ EE + EE +EE EEEE+ E E+ +E
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 39.8 bits (93), Expect = 0.005
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++EE++EE+ EE + EE +EE EEEE+ E E+ E K+ E
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIKE 329
Score = 39.4 bits (92), Expect = 0.006
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
G+E + +E +E++EE++EE+ EE + EE +EE EEEE+ E E+ E +K
Sbjct: 269 GIEGWDWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 39.4 bits (92), Expect = 0.007
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVK 411
E++EE++EE+ EE + EE +EE EEEE+ E +++ E + F+K
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIK 328
Score = 38.7 bits (90), Expect = 0.012
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E++EE++EE+ EE + EE +EE EEEE+ E E+ E ++ KE+
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIKEV 330
Score = 37.5 bits (87), Expect = 0.030
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
K +EE++EE+ EE + EE +EE EEEE+ E E+ E
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 38.9 bits (91), Expect = 0.005
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 23/79 (29%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEE-----------------------EEEEEEEEE 379
G ++EEE+E+E E+E++ +E E +E EE+E E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAEL 73
Query: 380 EEEEEEEEEEEEEEEEEEE 398
EE EE +++E +EEE
Sbjct: 74 REELREEFLKKQEAVKEEE 92
Score = 36.6 bits (85), Expect = 0.025
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------------EEEEEEEE 382
F +EEE+E+E E+E++ +E E +E EE+E E
Sbjct: 13 FGDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAE 72
Query: 383 EEEEEEEEEEEEEEEEKELE 402
EE EE +++E KE E
Sbjct: 73 LREELREEFLKKQEAVKEEE 92
Score = 30.0 bits (68), Expect = 3.5
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 31/77 (40%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEE---------------------------EEEEEEEEE 397
+++EEE+E+E E+E++ +E E EE+E E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAEL 73
Query: 398 EKELENEGHCDFVKLRE 414
+EL E F+K +E
Sbjct: 74 REELREE----FLKKQE 86
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 36.7 bits (86), Expect = 0.006
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E EEEE++E E EEE EE E E EEE EE K L
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKLL 37
Score = 34.7 bits (81), Expect = 0.026
Identities = 19/36 (52%), Positives = 21/36 (58%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E EEEE++E E EEE EE E E EEE EE
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.7 bits (81), Expect = 0.034
Identities = 20/38 (52%), Positives = 23/38 (60%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E EEEE++E E EEE EE E E EEE EE + L
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKLLL 38
Score = 34.4 bits (80), Expect = 0.035
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
LEEEE++E E EEE EE E E EEE EE +
Sbjct: 3 LEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.035
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
L EEEE++E E EEE EE E E EEE EE +
Sbjct: 2 LLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.042
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EEEE++E E EEE EE E E E+ELE
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEEL 33
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 39.6 bits (92), Expect = 0.006
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E+ + E +E ++EE +E + E++ + E EE+E EEE+EEEE + +
Sbjct: 732 DDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSA 791
Query: 405 GHCDFVKLREML 416
+ + ML
Sbjct: 792 KRAKKKQRKNML 803
Score = 36.2 bits (83), Expect = 0.063
Identities = 15/97 (15%), Positives = 44/97 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E++ ++ E + E++ + ++E + + ++E+ + E +E ++EE +E
Sbjct: 701 VEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGE 760
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKR 440
+ + D ++ E+ E+ + KK+
Sbjct: 761 QDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKK 797
Score = 32.3 bits (73), Expect = 0.91
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++E + + ++E+ + E +E ++EE +E + E++ + E EE+E E E
Sbjct: 721 TSDDEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEE 780
Query: 403 NE 404
E
Sbjct: 781 KE 782
Score = 32.3 bits (73), Expect = 1.0
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
GL+E + E++ + E EE+E EEE+EEEE +E + ++++ +
Sbjct: 749 GLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKN 801
Score = 31.6 bits (71), Expect = 1.8
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ E++ + E EE+E EEE+EEEE +E + ++++ + K L
Sbjct: 757 FDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKNMLKSL 806
Score = 29.2 bits (65), Expect = 9.1
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
F + E++ + E EE+E EEE+EEEE +E + ++++ +
Sbjct: 754 FYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKN 801
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded
proton translocating A0 complex. It is unclear precisely
where AhaH fits into these complexes.
Length = 85
Score = 36.0 bits (83), Expect = 0.006
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EEE ++ E EE E EE EEE + EE +E EEE E+E E+ EE EKE+E
Sbjct: 19 EEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIE 75
Score = 34.1 bits (78), Expect = 0.029
Identities = 28/57 (49%), Positives = 33/57 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE+ EE EE EEE ++ E EE E EE EEE + EE +E EEE EKE E
Sbjct: 8 EEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAE 64
Score = 33.7 bits (77), Expect = 0.046
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE EE EEE ++ E EE E EE EEE + EE +E EEE E+E +++ E
Sbjct: 10 DAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREE 69
Query: 405 G 405
G
Sbjct: 70 G 70
Score = 33.3 bits (76), Expect = 0.059
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E EE E EE EEE + EE +E EEE E+E E+ EE E+E E + K E
Sbjct: 28 EAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAKEK 84
Score = 32.5 bits (74), Expect = 0.091
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E ++ E EE E EE EEE + EE +E EEE E+E E+ EE E+E + ++++
Sbjct: 21 ERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSK 80
Query: 405 G 405
Sbjct: 81 A 81
Score = 32.5 bits (74), Expect = 0.097
Identities = 27/59 (45%), Positives = 33/59 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE+ EE EE EEE ++ E EE E EE EEE + EE +E EEE E E E
Sbjct: 6 KAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAE 64
Score = 32.5 bits (74), Expect = 0.12
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE E EE EEE + EE +E EEE E+E E+ EE E+E E + + +EK
Sbjct: 31 EEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAKEK 84
Score = 31.7 bits (72), Expect = 0.17
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E EE E EE EEE + EE +E EEE E+E E+ EE E+E E + + KE
Sbjct: 27 AEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAKE 83
Score = 31.7 bits (72), Expect = 0.22
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ E EE E EE EEE + EE +E EEE E+E E+ EE E+E E
Sbjct: 26 IAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEA 76
Score = 31.0 bits (70), Expect = 0.33
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-EEEEKELE 402
LEE ++ EE+ EE EE EEE ++ E EE E EE EEE + EE +E E+E+E
Sbjct: 1 LEEIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIE 60
Query: 403 NE 404
E
Sbjct: 61 KE 62
Score = 31.0 bits (70), Expect = 0.38
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEKE 400
+ EE+ EE EE EEE ++ E EE E EE EEE + EE E EEE E+E E
Sbjct: 6 KAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAE 64
Score = 30.6 bits (69), Expect = 0.44
Identities = 29/67 (43%), Positives = 37/67 (55%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
EE ++ EE+ EE EE EEE ++ E EE E EE EEE + EE KE E E
Sbjct: 2 EEIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEK 61
Query: 408 DFVKLRE 414
+ K+RE
Sbjct: 62 EAEKIRE 68
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 39.4 bits (92), Expect = 0.007
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
K Y F + +E+ E+E E++ E E+ +E+E+ ++E E+E EE +E E +
Sbjct: 503 KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562
Query: 390 EEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV 447
+ E E+E ++ L+ K E +IR E K K E + +
Sbjct: 563 KLELEKEAQEALKA-----LKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKI 615
Score = 30.2 bits (68), Expect = 4.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ + E +EE E+ E+E E++ E E+ +E+E+ +KELE E
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQE 551
Score = 29.8 bits (67), Expect = 5.8
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ + E +EE E+ E+E E++ E E+ +E+E+ ++E E+E +EL+
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 39.1 bits (92), Expect = 0.007
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EE EE+EE E E ++EE EEE+ EEE + E+ + E +E+ EE
Sbjct: 476 AAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELAKEDPEE 529
Score = 39.1 bits (92), Expect = 0.007
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EE EE+EE E E ++EE EEE+ EEE + E+ + E +E+ EE
Sbjct: 476 AAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELAKEDPEE 529
Score = 36.8 bits (86), Expect = 0.039
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E EE+EE E E ++EE EEE+ EEE + E+ + E +E+ EE
Sbjct: 478 AEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELAKEDPEE 529
Score = 35.2 bits (82), Expect = 0.099
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ EE+EE E E ++EE EEE+ EEE + E+ + E +E+ EE
Sbjct: 475 EAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELAKEDPEE 529
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 38.1 bits (89), Expect = 0.008
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 339 KYF------NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
K F + ++ E++ E + + ++ E E+E E EE+ EE +++ E + +E
Sbjct: 23 KRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKE 82
Query: 393 EEEEEEKELENEGHCDFVKLREMLIRTNMEDMRE 426
E + E + L +E + ++RE +
Sbjct: 83 EAQAERQRLLDEAREEADEIREKWQEALRREQAA 116
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 38.9 bits (91), Expect = 0.008
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE EE +E + + EE +EEE++EE++ ++ EE ++ EE K
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPK 97
Score = 38.5 bits (90), Expect = 0.010
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE EE +E + + EE +EEE++EE++ ++ EE ++ EE + E+
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDEV 102
Score = 38.5 bits (90), Expect = 0.011
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
L EE EE +E + + EE +EEE++EE++ ++ EE ++ EE
Sbjct: 49 LTEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 37.7 bits (88), Expect = 0.015
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE EE +E + + EE +EEE++EE++ ++ EE ++ +E
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFP 96
Score = 37.7 bits (88), Expect = 0.015
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
EE EE +E + + EE +EEE++EE++ ++ EE ++ EE
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 37.7 bits (88), Expect = 0.015
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
EE EE +E + + EE +EEE++EE++ ++ EE ++ EE
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 37.7 bits (88), Expect = 0.015
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
EE EE +E + + EE +EEE++EE++ ++ EE ++ EE
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 34.6 bits (80), Expect = 0.14
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLR-EML 416
EE EE +E + + EE +EEE++EE++ ++ EE K+ E F K R E+L
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE----FPKARDEVL 103
Score = 32.3 bits (74), Expect = 0.87
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
++ EE +EEE++EE++ ++ EE ++ EE
Sbjct: 63 AKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 30.8 bits (70), Expect = 2.7
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMED 423
EE EE +E + + EE +EEE++EE++ + EN+ + + +
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDEVLEQLNQ 108
Score = 29.3 bits (66), Expect = 8.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEE 368
F+ +EEE++EE++ ++ EE ++ EE
Sbjct: 67 FSEESDEEEDDEEDDNDDSEENKDTVEE 94
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 38.9 bits (90), Expect = 0.008
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 321 VPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
P + + + Y+ K + + + EE E E E E + + ++E+++ EE
Sbjct: 61 RPRVSSSWNNESYNRLPIKTKDNVVADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEE 120
Query: 381 EEEEEEEEEEEEEEEEEEK 399
++ E +++ + E+E+
Sbjct: 121 QKIAPEIPVKQQIDSEKER 139
Score = 36.9 bits (85), Expect = 0.039
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE E E E E + + ++E+++ EE++ E +++ + EKE
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 36.5 bits (84), Expect = 0.048
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N EE E E E E + + ++E+++ EE++ E +++ + E+E K +
Sbjct: 89 NNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERIASICTKII 148
Query: 402 EN 403
E
Sbjct: 149 EE 150
Score = 33.5 bits (76), Expect = 0.40
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E E E E + + ++E+++ EE++ E +++ + E E
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 30.0 bits (67), Expect = 4.7
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTN-MEDM 424
EE E E E E + + ++E+++ EE++ E+ + D K R I T +E+
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERIASICTKIIEEP 151
Query: 425 REKTH 429
E
Sbjct: 152 EENLG 156
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 39.0 bits (90), Expect = 0.008
Identities = 24/87 (27%), Positives = 37/87 (42%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
F LE+EE + E EE E EE +E + E E EE ++EE E EE+
Sbjct: 604 FEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEERG 663
Query: 401 LENEGHCDFVKLREMLIRTNMEDMREK 427
+ D+ + I ++ R +
Sbjct: 664 DPEKKDVDWYTEEKRKIEEQLKINRSE 690
Score = 37.0 bits (85), Expect = 0.032
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E EEE +++E+ E+ E+EE + E EE E EE +E + E E+E EN
Sbjct: 590 EGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETERE-ENAR 648
Query: 406 HCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ ++ + + EK Y K+++EE+
Sbjct: 649 KKEELRGN-FELEERGDP--EKKDVDWYTE-EKRKIEEQ 683
Score = 35.5 bits (81), Expect = 0.11
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE +E + E E EE ++EE E EE + E+++ + EE+ + EE+ +
Sbjct: 626 VTAENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLK 685
Query: 401 LENEGHCDFV 410
+ V
Sbjct: 686 INRSEFETMV 695
Score = 33.2 bits (75), Expect = 0.51
Identities = 16/74 (21%), Positives = 36/74 (48%)
Query: 331 NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ + + + + ++ E E EE ++EE E EE + E+++ + EE+ + EE+
Sbjct: 624 SSVTAENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQ 683
Query: 391 EEEEEEEEKELENE 404
+ E + + E
Sbjct: 684 LKINRSEFETMVPE 697
Score = 33.2 bits (75), Expect = 0.56
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
E EE +E + E E EE ++EE E EE + E+++ + EE++++E + +
Sbjct: 629 ENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINR 688
Query: 410 VKLREM 415
+ M
Sbjct: 689 SEFETM 694
Score = 32.8 bits (74), Expect = 0.78
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 344 LEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E E EE ++E E EE + E+++ + EE+ + EE+ + E E E
Sbjct: 639 YETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPES 698
Query: 398 EKELENEGHCDFVKLR 413
+E +V++
Sbjct: 699 RVVIEGYRAGRYVRIV 714
Score = 32.4 bits (73), Expect = 0.89
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ + E + E EE E EE +E + E E EE ++EE E EE
Sbjct: 602 GNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEE 661
Query: 396 EEEKELENEGHCDFVKLR---EMLI-RTNMEDM 424
+ E ++ K + ++ I R+ E M
Sbjct: 662 RGDPEKKDVDWYTEEKRKIEEQLKINRSEFETM 694
Score = 29.7 bits (66), Expect = 6.3
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCR 431
E EEE +++E+ E+ E+EE + + E+ G + E + E RE+ +
Sbjct: 590 EGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARK 649
Query: 432 HYELYRKKRLEEESNVIGSNFRW 454
EL LEE + + W
Sbjct: 650 KEELRGNFELEERGDPEKKDVDW 672
Score = 29.3 bits (65), Expect = 7.4
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E E+ E ++ +E +++EE+E E + +EEE ++E+E E+ + +N
Sbjct: 1009 PECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEM 1068
Query: 408 DFVKLREM 415
+L++
Sbjct: 1069 AKKRLKKK 1076
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 38.9 bits (91), Expect = 0.008
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE + + EE EE E EE++ ++E + E E +E EEE + E +NE
Sbjct: 815 EEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNE 873
Score = 38.5 bits (90), Expect = 0.011
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E EEE + + EE EE E EE++ ++E + E E +E EEE + EN
Sbjct: 811 IIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINEN 870
Query: 404 E 404
+
Sbjct: 871 K 871
Score = 38.5 bits (90), Expect = 0.012
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E EEE + + EE EE E EE++ ++E + E E +E EEE + NE
Sbjct: 813 ESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKN 872
Query: 408 DFVKLRE 414
+FV+ +
Sbjct: 873 EFVEFKN 879
Score = 38.5 bits (90), Expect = 0.013
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 324 SNPTIDKNLYSF----------FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
+NP +K L L ++ E EEE + + EE EE
Sbjct: 777 NNPNAEKILIITEILSDGINNSDINDRPQELIDQIIESEEERLKALRIQREEMLMRPEEL 836
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE++ ++E + E E +E E+E++N
Sbjct: 837 ELINEEQKNLKQEIKLELSEIQEAEEEIQNI 867
Score = 37.7 bits (88), Expect = 0.019
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E EE++ ++E + E E +E EEE + E + E E + + ++ +L
Sbjct: 832 RPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKLNKLIIA 890
Score = 37.7 bits (88), Expect = 0.019
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ EE EE E EE++ ++E + E E +E EEE + E + E E +N+
Sbjct: 821 ALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKND 880
Score = 37.7 bits (88), Expect = 0.021
Identities = 23/118 (19%), Positives = 52/118 (44%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
ID+ + S + ++ EE EE E EE++ ++E + E E +E EEE +
Sbjct: 808 IDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNI 867
Query: 388 EEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445
E + E E + + + K + + + +++++ + ++ +EE+
Sbjct: 868 NENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEEA 925
Score = 35.0 bits (81), Expect = 0.13
Identities = 22/89 (24%), Positives = 35/89 (39%)
Query: 312 SLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEE 371
L I + +N I+ D + E + + EE EE E EE+
Sbjct: 784 ILIITEILSDGINNSDINDRPQELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQ 843
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ ++E + E E +E EEE + E K
Sbjct: 844 KNLKQEIKLELSEIQEAEEEIQNINENKN 872
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 35.0 bits (81), Expect = 0.008
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
L+ +++E + EEE+ EEEEE + EE +E E+ + EE E E
Sbjct: 22 LKAKKKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 34.6 bits (80), Expect = 0.013
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
L + + + +++E + EEE+ EEEEE + EE +E E+ + EE E E
Sbjct: 13 MLNADLLAKLKAKKKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 34.6 bits (80), Expect = 0.014
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++E + EEE+ EEEEE + EE +E E+ + EE E EL
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESEL 66
Score = 33.9 bits (78), Expect = 0.022
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
++E + EEE+ EEEEE + EE +E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 33.9 bits (78), Expect = 0.022
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
++E + EEE+ EEEEE + EE +E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 33.9 bits (78), Expect = 0.022
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
++E + EEE+ EEEEE + EE +E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 33.9 bits (78), Expect = 0.027
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVK 411
++E + EEE+ EEEEE + EE +E E+ + +EL NE D+ K
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESELDWRK 70
Score = 33.1 bits (76), Expect = 0.039
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++E + EEE+ EEEEE + EE +E E+ + EE E +
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 32.7 bits (75), Expect = 0.068
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E + EEE+ EEEEE + EE +E E+ + E+ L
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNES 64
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 39.1 bits (91), Expect = 0.009
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E+ +EE + + + E EE E E+E E E+ + + + E
Sbjct: 44 LSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQNQSDVLKSSSIVKEESIST 103
Query: 408 DFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVIGSN 451
D + + + ++ RE R E L EE+ G+
Sbjct: 104 DMDGIDDDSLDRKLKLERENLRKREIE-----ELAEENFSRGNK 142
Score = 34.5 bits (79), Expect = 0.22
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE+ E E+ +EE E E + EE+ EEE+ E + + + E E+ +E
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
Score = 34.1 bits (78), Expect = 0.27
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE+ E E+ +EE E E + EE+ EEE+ E + + + E E+ ++L+N
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQN 305
Score = 33.7 bits (77), Expect = 0.33
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE+ E E+ +EE E E + EE+ EEE+ E + + + E E+ EK
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREK 302
Score = 33.7 bits (77), Expect = 0.35
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
LEE+ E E+ +EE E E + EE+ EEE+ E + + + E E+ E
Sbjct: 251 LEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRRE 301
Score = 33.3 bits (76), Expect = 0.44
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 327 TIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+D++ + F L EE+ E E+ +EE E E + EE+ EEE+ E + +
Sbjct: 240 GMDEHSFEDF-------LLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQA 292
Query: 387 EEEEEEEEE 395
+ E E+ E
Sbjct: 293 KAEVEKRRE 301
Score = 33.3 bits (76), Expect = 0.51
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 330 KNLYSFFDCKYF-----NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+N+Y D K F G++E E+ EE+ E E+ +EE E E + EE+ EEE
Sbjct: 222 QNVYDNNDHKDFCVEIEGGMDEHSFEDFLLEEKRRELEKLAKEEAERERQAEEQRRREEE 281
Query: 385 EEEEEEEEEEEEEEKELENEGHCDFVKLREML 416
+ E + + + E E E KL+ +L
Sbjct: 282 KAAMEADRAQAKAEVEKRRE------KLQNLL 307
Score = 30.6 bits (69), Expect = 3.2
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ ++ ++E+ E+ +EE + + + E EE E E E+E E
Sbjct: 24 QKRIQQNNGDKEDSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVE 83
Query: 405 GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ L+ I + L RK +LE E
Sbjct: 84 QN-QSDVLKSSSIVKEESISTDMDGIDDDSLDRKLKLERE 122
Score = 29.8 bits (67), Expect = 5.1
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEE 397
+EE + + + E EE E E+E E E+ + +EE + + +++
Sbjct: 54 NAKEEIQVDFQHNSESAVEEVEAEDEIEVEQNQSDVLKSSSIVKEESISTDMDGIDDDSL 113
Query: 398 EKELENEGHCDFVKLREMLIRTNMEDMREKTHCR 431
+++L+ E RE L + +E++ E+ R
Sbjct: 114 DRKLKLE--------RENLRKREIEELAEENFSR 139
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 37.4 bits (87), Expect = 0.009
Identities = 13/57 (22%), Positives = 32/57 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E+ EEE++ E ++++ EE E + + EE + +E + + E++ ++ +L
Sbjct: 73 KEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDDSDL 129
Score = 36.7 bits (85), Expect = 0.017
Identities = 12/55 (21%), Positives = 31/55 (56%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++E+ EEE++ E ++++ EE E + + EE + +E + + E ++++
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDD 126
Score = 35.5 bits (82), Expect = 0.043
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLR 413
++E+ EEE++ E ++++ EE E + + EE + +E +++NE D L+
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDDSDLK 130
Score = 35.5 bits (82), Expect = 0.048
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
++E+ EEE++ E ++++ EE E + + EE + +E + + E++
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDD 123
Score = 34.7 bits (80), Expect = 0.090
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
K L EEE++ E ++++ EE E + + EE + +E + + E++ ++ +
Sbjct: 69 KKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDDSD 128
Score = 34.0 bits (78), Expect = 0.14
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EEE++ E ++++ EE E + + EE + +E + + E++ ++ + K
Sbjct: 76 LTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDDSDLK 130
Score = 34.0 bits (78), Expect = 0.16
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLI 417
++E+ EEE++ E ++++ EE E + + EE + +E L + + D + ++ +
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDDSDLKL 131
Query: 418 RT 419
T
Sbjct: 132 AT 133
Score = 33.6 bits (77), Expect = 0.19
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E+ EEE++ E ++++ EE E + + EE + +E + + E++
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDD 123
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 37.3 bits (87), Expect = 0.009
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E+ +E E E +EE EE E E + EE E+ E E E E E+ E+EL
Sbjct: 8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQEL 63
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 38.7 bits (90), Expect = 0.010
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E + + + +E EE E + E E +E E+ +E EE+ EEEK+ +
Sbjct: 670 LELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDAD 727
Score = 37.6 bits (87), Expect = 0.024
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E +E E+ +E EE+ EEE++ ++ + E ++ EE E E
Sbjct: 691 KVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLA 750
Query: 401 LENE 404
+N
Sbjct: 751 EQNS 754
Score = 36.8 bits (85), Expect = 0.046
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEEE 395
E EE E + E E +E E+ +E EE+ EEE++ ++ EE E
Sbjct: 683 ESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELE 742
Query: 396 EEEKELENE 404
E L E
Sbjct: 743 ALEANLLAE 751
Score = 36.0 bits (83), Expect = 0.070
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ + + +E EE E + E E +E E+ +E EE+ EEE++ + +N
Sbjct: 672 LQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKN 731
Query: 404 E 404
E
Sbjct: 732 E 732
Score = 34.9 bits (80), Expect = 0.15
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N + E E +E E+ +E EE+ EEE++ ++ + E ++ EE E E L
Sbjct: 690 NKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLL 749
Score = 34.9 bits (80), Expect = 0.18
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E+ +E EE+ EEE++ ++ + E ++ EE E E E+ K
Sbjct: 702 EIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSLK 756
Score = 34.5 bits (79), Expect = 0.20
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ +E EE E + E E +E E+ +E EE+ EEE++ ++ + E ++
Sbjct: 678 SQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQD 735
Score = 34.5 bits (79), Expect = 0.21
Identities = 16/75 (21%), Positives = 36/75 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E EE+ EEE++ ++ + E ++ EE E E E+ + +++++K +
Sbjct: 708 FDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSLKAQKQQQKRIAA 767
Query: 404 EGHCDFVKLREMLIR 418
E + + L+R
Sbjct: 768 EVTGQMILESQELLR 782
Score = 34.5 bits (79), Expect = 0.24
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
G +E E+ +E EE+ EEE++ ++ + E ++ EE E E E+ L
Sbjct: 696 EGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSL 755
Query: 402 E 402
+
Sbjct: 756 K 756
Score = 34.1 bits (78), Expect = 0.30
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ +E EE+ EEE++ ++ + E ++ EE E E E+ + ++ + +
Sbjct: 704 EDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSLKAQKQQQK 763
Score = 33.3 bits (76), Expect = 0.48
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L +E EE+ EEE++ ++ + E ++ EE E E E+ + +++++
Sbjct: 706 LLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSLKAQKQQQ 762
Score = 32.9 bits (75), Expect = 0.56
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L +E EE+ EEE++ ++ + E ++ EE E E E+ + ++++++
Sbjct: 707 LFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSLKAQKQQQK 763
Score = 32.6 bits (74), Expect = 0.76
Identities = 16/96 (16%), Positives = 38/96 (39%)
Query: 301 STSPSSPPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEE 360
ST P + + +I+ + F+ EE+ EEE++ +
Sbjct: 668 STLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDAD 727
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ + E ++ EE E E E+ + ++++++
Sbjct: 728 DFKNEWQDISLEELEALEANLLAEQNSLKAQKQQQK 763
Score = 32.2 bits (73), Expect = 1.2
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E + E + + + +E EE E + E E +E E+ +E EE +
Sbjct: 661 IEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVG 718
Score = 31.8 bits (72), Expect = 1.4
Identities = 16/79 (20%), Positives = 30/79 (37%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + E + + + +E EE E + E E +E E+ +E EE+ E
Sbjct: 662 EVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIE 721
Query: 405 GHCDFVKLREMLIRTNMED 423
D + ++E+
Sbjct: 722 EEKDADDFKNEWQDISLEE 740
Score = 31.4 bits (71), Expect = 1.9
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E + E + + + +E EE E + E E +E E+ +E EE+
Sbjct: 658 GSFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEED 714
Score = 31.0 bits (70), Expect = 2.8
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK---ELENEGHCDF 409
E E E+EE E + E + E + + + +E EE E K
Sbjct: 645 EPMESEKEESESDGSFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIE 704
Query: 410 VKLREMLIRTNMEDMRE 426
L + N+ M E
Sbjct: 705 DLLFDESEEDNIVGMIE 721
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 37.9 bits (88), Expect = 0.010
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
E EE E E E+E EEEEEE+ + E EL G +
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTE 95
Score = 37.1 bits (86), Expect = 0.018
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
GLE EE E E E+E EEEEEE+ + E E E+ E +EE
Sbjct: 58 GLEVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEAR 106
Score = 35.2 bits (81), Expect = 0.065
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E EE E E E+E EEEEEE+ + E E E+ E +EE L +
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEARLLTQRR 112
Score = 34.8 bits (80), Expect = 0.093
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
E EE E E E+E EEEEEE+ + E E E+ E +EE + EG F
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEARLLTQRRREGKPQF 119
Score = 34.4 bits (79), Expect = 0.13
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E E E+E EEEEEE+ + E E E+ E +EE ++ E +
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEARLLTQRRREGK 116
Score = 33.7 bits (77), Expect = 0.19
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E EE E E E+E EEEEEE+ + E E E+ E +EE
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEAR 106
Score = 33.7 bits (77), Expect = 0.19
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E EE E E E+E EEEEEE+ + E E E+ E +EE
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEAR 106
Score = 33.3 bits (76), Expect = 0.26
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ EE E E E+E EEEEEE+ + E E E+ E +EE + E K
Sbjct: 61 VSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEARLLTQRRREGK 116
>gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated.
Length = 228
Score = 37.9 bits (88), Expect = 0.010
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 324 SNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
I KN SF + Y + E E EEE +++ EE +++ +E + +E+++
Sbjct: 4 FKNRIPKNSVSFSEETYELQFPKPIEVEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQK 63
Query: 384 EEEEEEEEEEEEEEEKELENE 404
E E ++ + E+ +E +
Sbjct: 64 LERERQQLLADREQFQEHVQQ 84
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 35.3 bits (82), Expect = 0.010
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EEE +E+ EE E+ EE E E +E EE +E+ + EE K++E
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 33.0 bits (76), Expect = 0.062
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+EEE +E+ EE E+ EE E E +E EE +E+ + EE ++ EE +
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 32.6 bits (75), Expect = 0.084
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+EEE +E+ EE E+ EE E E +E EE +E+ + EE ++ +E
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 32.2 bits (74), Expect = 0.13
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+EEE +E+ EE E+ EE E E +E EE +E+ + EE ++ EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 32.2 bits (74), Expect = 0.13
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+EEE +E+ EE E+ EE E E +E EE +E+ + EE ++ EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 32.2 bits (74), Expect = 0.13
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+EEE +E+ EE E+ EE E E +E EE +E+ + EE ++ EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 32.2 bits (74), Expect = 0.13
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+EEE +E+ EE E+ EE E E +E EE +E+ + EE ++ EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 32.2 bits (74), Expect = 0.13
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+EEE +E+ EE E+ EE E E +E EE +E+ + EE ++ EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 32.2 bits (74), Expect = 0.13
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+EEE +E+ EE E+ EE E E +E EE +E+ + EE ++ EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 32.2 bits (74), Expect = 0.13
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+EEE +E+ EE E+ EE E E +E EE +E+ + EE ++ EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 38.1 bits (89), Expect = 0.010
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE+EEE +E++ E EE EEE E EE +++E +E + + + + K++
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDV 182
Score = 37.8 bits (88), Expect = 0.014
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE+EEE +E++ E EE EEE E EE +++E +E + K +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGD 172
Score = 37.8 bits (88), Expect = 0.016
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE+EEE +E++ E EE EEE E EE +++E +E + + + + + LE
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDVLE 184
Score = 37.4 bits (87), Expect = 0.019
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTN 420
EE+EEE +E++ E EE EEE E EE +++E ++ G + ++ +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDVLESL 186
Score = 36.6 bits (85), Expect = 0.033
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEEEEEE 389
KY N +EEE +E++ E EE EEE E EE +++E +E + + ++ E
Sbjct: 125 KYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDVLE 184
Query: 390 EEEEEEEEEKELE 402
+ E + E+E
Sbjct: 185 SLIDAAEWKLEVE 197
Score = 36.6 bits (85), Expect = 0.034
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE+EEE +E++ E EE EEE E EE +++E +E K +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDT 173
Score = 36.6 bits (85), Expect = 0.035
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
EE+EEE +E++ E EE EEE E EE +++E +E + + + L +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKD 181
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 37.5 bits (87), Expect = 0.011
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLR 413
+++++E+EE E EE + EE EE +++ + E + + E+ +E D L+
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDLK 124
Score = 35.6 bits (82), Expect = 0.040
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIR 418
+++++E+EE E EE + EE EE +++ + E + + H D + L ++ +
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDLKLA 126
Query: 419 T 419
T
Sbjct: 127 T 127
Score = 35.2 bits (81), Expect = 0.057
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+++++E+EE E EE + EE EE +++ + E + + E E+ + +L
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDL 123
Score = 34.0 bits (78), Expect = 0.12
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++++E+EE E EE + EE EE +++ + E + + E E ++
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDL 120
Score = 30.5 bits (69), Expect = 1.7
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
EE E EE + EE EE +++ + E + + E E+
Sbjct: 74 KEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
Score = 28.6 bits (64), Expect = 8.0
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
K E EE + EE EE +++ + E + + E E+
Sbjct: 70 KKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
>gnl|CDD|218637 pfam05558, DREPP, DREPP plasma membrane polypeptide. This family
contains several plant plasma membrane proteins termed
DREPPs as they are developmentally regulated plasma
membrane polypeptides.
Length = 201
Score = 37.3 bits (86), Expect = 0.011
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE++ EEE E E++ +E+E EEE++EEE + E + EE +
Sbjct: 132 EEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAK 189
Score = 36.6 bits (84), Expect = 0.019
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ F F E++ EEE E E++ +E+E EEE++EEE +
Sbjct: 120 FFVFEKVSTFIVEEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAP 179
Query: 392 EEEEEEEKELE 402
E + EE
Sbjct: 180 ETKVEETPAKA 190
Score = 35.8 bits (82), Expect = 0.036
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE++ EEE E E++ +E+E EEE++EEE + E + E+
Sbjct: 132 EEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKA 190
Score = 33.9 bits (77), Expect = 0.18
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E++ +E+E EEE++EEE + E + EE + E +
Sbjct: 144 ETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPAAPAAEPQ 199
Score = 30.4 bits (68), Expect = 1.9
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ +E+E EEE++EEE + E + EE + E ++
Sbjct: 148 KPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPAAPAAEPQK 200
Score = 30.4 bits (68), Expect = 1.9
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ +E+E EEE++EEE + E + EE + E ++
Sbjct: 148 KPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPAAPAAEPQK 200
>gnl|CDD|216403 pfam01271, Granin, Granin (chromogranin or secretogranin).
Length = 585
Score = 38.4 bits (89), Expect = 0.011
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+ EE EE++ +EE + +E + +E + + E+E EEE+EEK E+ G
Sbjct: 223 EDWNPIEEGEEDQTQEEVKRSKERTHKGRSLPDESKRSGQLGLEDEAEEEKEEKGQESRG 282
Query: 406 H 406
Sbjct: 283 L 283
Score = 36.1 bits (83), Expect = 0.061
Identities = 19/69 (27%), Positives = 27/69 (39%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
D +G E+E EEE+EE+ +E + + E E EE
Sbjct: 255 DESKRSGQLGLEDEAEEEKEEKGQESRGLSAVQTYLLRWVNARGRGRSQNRAERERSEES 314
Query: 397 EEKELENEG 405
EEKEL+
Sbjct: 315 EEKELDRAS 323
Score = 35.4 bits (81), Expect = 0.11
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G +++ E +E E+ +++E++ + E+ E+ EE EE++ +EE K +
Sbjct: 185 GQSKQKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKRSK 244
Query: 403 NEGH 406
H
Sbjct: 245 ERTH 248
Score = 35.0 bits (80), Expect = 0.13
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEK 399
G + EE EE++ +EE + +E + +E + E+E EEE+EE+ +E +
Sbjct: 222 GEDWNPIEEGEEDQTQEEVKRSKERTHKGRSLPDESKRSGQLGLEDEAEEEKEEKGQESR 281
Query: 400 ELENE 404
L
Sbjct: 282 GLSAV 286
Score = 33.0 bits (75), Expect = 0.52
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
N +EE EE++ +EE + +E + +E + + E+E EEE+EE+ +E
Sbjct: 226 NPIEEGEEDQTQEEVKRSKERTHKGRSLPDESKRSGQLGLEDEAEEEKEEKGQESR 281
Score = 32.7 bits (74), Expect = 0.76
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E E+ +++E++ + E+ E+ EE EE++ +EE + +E K
Sbjct: 195 DEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKRSKERTHK 249
Score = 32.3 bits (73), Expect = 0.84
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++ E +E E+ +++E++ + E+ E+ EE EE++ +EE ++ E
Sbjct: 189 QKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKRSKERTH 248
Query: 406 H 406
Sbjct: 249 K 249
Score = 31.9 bits (72), Expect = 1.1
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 23/85 (27%)
Query: 343 GLEEEEEEEEEEEEEEEE-----------------------EEEEEEEEEEEEEEEEEEE 379
GLE+E EEE+EE+ +E E E EE EE+E +
Sbjct: 264 GLEDEAEEEKEEKGQESRGLSAVQTYLLRWVNARGRGRSQNRAERERSEESEEKELDRAS 323
Query: 380 EEEEEEEEEEEEEEEEEEEKELENE 404
+E E + + + L
Sbjct: 324 PYQEIEITANLQIPPSDLIRMLRKG 348
Score = 31.5 bits (71), Expect = 1.7
Identities = 13/62 (20%), Positives = 30/62 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ +++E++ + E+ E+ EE EE++ +EE + +E + + L +E
Sbjct: 197 REKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKRSKERTHKGRSLPDE 256
Query: 405 GH 406
Sbjct: 257 SK 258
Score = 31.5 bits (71), Expect = 1.8
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEE 397
G + E E EE EE+E + +E E + + + + + EE
Sbjct: 300 GRSQNRAERERSEESEEKELDRASPYQEIEITANLQIPPSDLIRMLRKGDGRKPRGRVEE 359
Query: 398 EKELE 402
E LE
Sbjct: 360 EGALE 364
Score = 31.1 bits (70), Expect = 1.9
Identities = 12/60 (20%), Positives = 33/60 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ + +++ E +E E+ +++E++ + E+ E+ EE EE++ ++E++
Sbjct: 183 LDGQSKQKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKR 242
Score = 29.6 bits (66), Expect = 5.8
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 14/73 (19%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEE--------------EEEEEEEEEEEEEEEEEEE 390
E+ EE EE++ +EE + +E + E+E EEE+EE+ +E
Sbjct: 223 EDWNPIEEGEEDQTQEEVKRSKERTHKGRSLPDESKRSGQLGLEDEAEEEKEEKGQESRG 282
Query: 391 EEEEEEEEKELEN 403
+ N
Sbjct: 283 LSAVQTYLLRWVN 295
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 33.9 bits (78), Expect = 0.011
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEEK 399
EEE+ E+EEE E+EEE EE+ E ++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEE 368
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEE 369
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEE 370
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEE 371
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEE 372
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEE 373
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEE 374
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEE 375
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEE 376
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEE 377
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEE 378
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEE 379
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEE 380
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEE 381
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEE 382
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEE 383
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEE 384
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEE 385
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEE 386
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEE 387
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEE 388
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEE 389
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEE 390
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEE 391
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEE 392
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEE 393
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEE 394
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEE 395
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEE 396
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.032
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEE 397
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 31.9 bits (73), Expect = 0.063
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 377 EEEEEEEEEEEEEEEEEEEEEEKE 400
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 31.2 bits (71), Expect = 0.11
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 379 EEEEEEEEEEEEEEEEEEEEKELE 402
EEE+ E+EEE E+EEE EE+ E++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 27.7 bits (62), Expect = 2.1
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 383 EEEEEEEEEEEEEEEEKELENE 404
EEE+ E+EEE E+EEE E ++E
Sbjct: 22 EEEKREDEEENEDEEEGEEQSE 43
Score = 26.9 bits (60), Expect = 3.4
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 381 EEEEEEEEEEEEEEEEEEKELENE 404
EEE+ E+EEE E+EEE E++ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 26.9 bits (60), Expect = 3.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 382 EEEEEEEEEEEEEEEEEKELENEG 405
EEE+ E+EEE E+EEE +E
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 38.0 bits (88), Expect = 0.012
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 340 YFNGLEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
YFN E EE ++E E E E + E +E+ E E + ++ E E E+E E+
Sbjct: 209 YFNDGENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESED 268
Query: 392 EEEEEEEKELENEGHC 407
E EEE +E ENE
Sbjct: 269 EYEEEAGEEQENEDKG 284
Score = 36.8 bits (85), Expect = 0.023
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ + + L++ E + E +E+ E E + ++ E E E+E E+E EEE EE+E E
Sbjct: 222 LEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENE 281
Query: 396 EEEKE 400
++ +E
Sbjct: 282 DKGEE 286
Score = 34.5 bits (79), Expect = 0.15
Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 3/155 (1%)
Query: 278 MTIFSSIPCDRSLIHTIFPPCLRSTSPSSPPHFHSLN-ILAMQKVPGSNPTIDKNLYSF- 335
M + IP +S +P P + + + + L+
Sbjct: 130 MIKVNFIPLREYYQREQNNAHKQSDAPPPVPDMPKKQELPVEETLSTIHEDDASTLHEDD 189
Query: 336 -FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
D + + L E ++E + E EE ++E E E ++ E + E +E+ E E
Sbjct: 190 ELDEEVTSYLNELDDEVTSYFNDGENEENDDELEAEVISYLKDGENDNEVKEKIRREYRE 249
Query: 395 EEEEKELENEGHCDFVKLREMLIRTNMEDMREKTH 429
+ +K NE + E E E
Sbjct: 250 WKGDKANTNETEIEDESEDEYEEEAGEEQENEDKG 284
Score = 29.9 bits (67), Expect = 3.7
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 329 DKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
D + +Y ++ E E E+E E+E EEE EE+E E++ EE
Sbjct: 236 DNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 345 EEEEEEEEEEEEEEEEEEEEE 365
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 346 EEEEEEEEEEEEEEEEEEEEE 366
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 347 EEEEEEEEEEEEEEEEEEEEE 367
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 348 EEEEEEEEEEEEEEEEEEEEE 368
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 349 EEEEEEEEEEEEEEEEEEEEE 369
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 350 EEEEEEEEEEEEEEEEEEEEE 370
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 351 EEEEEEEEEEEEEEEEEEEEE 371
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 352 EEEEEEEEEEEEEEEEEEEEE 372
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 353 EEEEEEEEEEEEEEEEEEEEE 373
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 354 EEEEEEEEEEEEEEEEEEEEE 374
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 355 EEEEEEEEEEEEEEEEEEEEE 375
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 356 EEEEEEEEEEEEEEEEEEEEE 376
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 357 EEEEEEEEEEEEEEEEEEEEE 377
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 358 EEEEEEEEEEEEEEEEEEEEE 378
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 359 EEEEEEEEEEEEEEEEEEEEE 379
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 360 EEEEEEEEEEEEEEEEEEEEE 380
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 361 EEEEEEEEEEEEEEEEEEEEE 381
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 362 EEEEEEEEEEEEEEEEEEEEE 382
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 363 EEEEEEEEEEEEEEEEEEEEE 383
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 364 EEEEEEEEEEEEEEEEEEEEE 384
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 365 EEEEEEEEEEEEEEEEEEEEE 385
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 366 EEEEEEEEEEEEEEEEEEEEE 386
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 367 EEEEEEEEEEEEEEEEEEEEE 387
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 368 EEEEEEEEEEEEEEEEEEEEE 388
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 369 EEEEEEEEEEEEEEEEEEEEE 389
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 370 EEEEEEEEEEEEEEEEEEEEE 390
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 371 EEEEEEEEEEEEEEEEEEEEE 391
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 372 EEEEEEEEEEEEEEEEEEEEE 392
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 373 EEEEEEEEEEEEEEEEEEEEE 393
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 374 EEEEEEEEEEEEEEEEEEEEE 394
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 375 EEEEEEEEEEEEEEEEEEEEE 395
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 376 EEEEEEEEEEEEEEEEEEEEE 396
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 377 EEEEEEEEEEEEEEEEEEEEE 397
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.012
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 378 EEEEEEEEEEEEEEEEEEEEE 398
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 32.6 bits (75), Expect = 0.11
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 380 EEEEEEEEEEEEEEEEEEEKE 400
EEE++EEEEEEEE +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 29.9 bits (68), Expect = 0.89
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 382 EEEEEEEEEEEEEEEEEKELENEG 405
EEE++EEEEEE+E ++ G
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDDDMG 84
>gnl|CDD|223497 COG0420, SbcD, DNA repair exonuclease [DNA replication,
recombination, and repair].
Length = 390
Score = 38.3 bits (89), Expect = 0.012
Identities = 21/64 (32%), Positives = 28/64 (43%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ +E E EE + EE E E EE E + EE EE +E + E EEE +
Sbjct: 319 YERIERLELLLEERATDLAEEPESSELEELLSELDVEEAFEELLADEVLLDRESEEELEA 378
Query: 401 LENE 404
E
Sbjct: 379 ALEE 382
Score = 37.9 bits (88), Expect = 0.015
Identities = 21/59 (35%), Positives = 26/59 (44%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + EE E E EE E + EE EE +E + E EEE E +EL
Sbjct: 328 LLEERATDLAEEPESSELEELLSELDVEEAFEELLADEVLLDRESEEELEAALEELLEL 386
Score = 37.9 bits (88), Expect = 0.016
Identities = 26/62 (41%), Positives = 31/62 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE + EE E E EE E + EE EE +E + E EEE E EE EL +
Sbjct: 329 LEERATDLAEEPESSELEELLSELDVEEAFEELLADEVLLDRESEEELEAALEELLELLD 388
Query: 404 EG 405
EG
Sbjct: 389 EG 390
Score = 36.3 bits (84), Expect = 0.049
Identities = 22/57 (38%), Positives = 26/57 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L EE + EE E E EE E + EE EE +E + E EEE E EE
Sbjct: 328 LLEERATDLAEEPESSELEELLSELDVEEAFEELLADEVLLDRESEEELEAALEELL 384
Score = 34.4 bits (79), Expect = 0.16
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ + + EE E E EE E + EE EE +E + E EEE E EE E +E
Sbjct: 330 EERATDLAEEPESSELEELLSELDVEEAFEELLADEVLLDRESEEELEAALEELLELLDE 389
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 37.9 bits (89), Expect = 0.013
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
L EEEEEEEE EEEE + E + ++E+++ + +E E+E +
Sbjct: 224 LGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
Score = 37.9 bits (89), Expect = 0.015
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EEEEEEEE EEEE + E + ++E+++ + +E E+E +
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
Score = 37.5 bits (88), Expect = 0.018
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EEEEEEEE EEEE + E + ++E+++ + +E E+E + +
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVN 278
Score = 37.5 bits (88), Expect = 0.019
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EEEEEEEE EEEE + E + ++E+++ + +E E+E +
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
Score = 37.5 bits (88), Expect = 0.019
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EEEEEEEE EEEE + E + ++E+++ + +E E+E +
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
Score = 36.4 bits (85), Expect = 0.039
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEEEEEEE EEEE + E + ++E+++ + +E E E +
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQ 275
Score = 36.4 bits (85), Expect = 0.041
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EEEEEE EEEE + E + ++E+++ + +E E+E +
Sbjct: 224 LGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
Score = 34.1 bits (79), Expect = 0.19
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EEEEEEEE EEEE + E + ++E+++ + +
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEP 270
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 38.1 bits (89), Expect = 0.014
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ + + + E +E E + E+ E ++ EE EE EE + ++K+ +
Sbjct: 375 LKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKK 434
Query: 404 E 404
+
Sbjct: 435 K 435
Score = 35.1 bits (81), Expect = 0.12
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+ + + + E +E E + E+ E ++ EE EE EE K + +
Sbjct: 376 KGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRK 433
Score = 33.9 bits (78), Expect = 0.28
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------ 397
L+E+ E ++ ++ E E++ E+E ++ E + E++E+E EE E+ EE ++ E
Sbjct: 271 LDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANL 330
Query: 398 ---EKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
E+ L++ DF E+ I + + R+++ Y+K + +
Sbjct: 331 QLIEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKV 380
Score = 33.9 bits (78), Expect = 0.29
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E +E E + E+ E ++ EE EE EE + ++++ +++E E
Sbjct: 384 RQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFE 439
Score = 33.1 bits (76), Expect = 0.44
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L+ + E +E E + E+ E ++ EE EE EE + ++++ +++E
Sbjct: 382 LDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEW 437
Score = 33.1 bits (76), Expect = 0.51
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E +E E + E+ E ++ EE EE EE + ++++ +++E EK
Sbjct: 385 QLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 33.1 bits (76), Expect = 0.53
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ + E +E E + E+ E ++ EE EE EE + ++++ ++++ E
Sbjct: 383 DRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 33.1 bits (76), Expect = 0.54
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E +E+ E ++ ++ E E++ E+E ++ E + E++E+E EE E+ EE
Sbjct: 261 ADLEKLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELR 320
Query: 398 EK 399
+K
Sbjct: 321 QK 322
Score = 32.7 bits (75), Expect = 0.61
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K FN +E+ E ++ ++ E E++ E+E ++ E + E++E+E EE E+ EE ++ E
Sbjct: 265 KLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGE 324
Query: 399 KELEN 403
N
Sbjct: 325 LLYAN 329
Score = 32.0 bits (73), Expect = 0.98
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L E +E E + E+ E ++ EE EE EE + ++++ +++E E+
Sbjct: 386 LSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFR 442
Score = 31.6 bits (72), Expect = 1.3
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 325 NPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
D+ K + LE+ E +E+ E ++ ++ E E++ E+E ++ E + E
Sbjct: 244 YYYKDEKYLDVVPLKAYADLEKLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLE 303
Query: 385 EEEEEEEEEEEEEEKE 400
++E+E EE E+ E+
Sbjct: 304 KQEDELEELEKAAEEL 319
Score = 29.3 bits (66), Expect = 6.9
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----------- 383
F+ L E E++ E+E ++ E + E++E+E EE E+ EE ++
Sbjct: 274 KFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLI 333
Query: 384 EEEEEEEEEEEEEEEKE 400
EE + + +E
Sbjct: 334 EEGLKSVRLADFYGNEE 350
Score = 29.3 bits (66), Expect = 7.8
Identities = 19/72 (26%), Positives = 41/72 (56%)
Query: 333 YSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
Y + D KY + + + + E+ E +E+ E ++ ++ E E++ E+E ++ E + E
Sbjct: 244 YYYKDEKYLDVVPLKAYADLEKLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLE 303
Query: 393 EEEEEEKELENE 404
++E+E +ELE
Sbjct: 304 KQEDELEELEKA 315
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 36.0 bits (83), Expect = 0.014
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEEEEEEEEE 364
F K FN L ++EEE+EEE E +EEE
Sbjct: 84 FMFVKVFNKLTSKKEEEKEEEIPEPTKEEE 113
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 38.1 bits (89), Expect = 0.014
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEE 367
EEEEEEEEEEEEEEE E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 38.1 bits (89), Expect = 0.014
Identities = 19/36 (52%), Positives = 20/36 (55%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EEEEEEEEEEEEEEE E E +L G
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQLPASG 438
Score = 37.4 bits (87), Expect = 0.023
Identities = 20/35 (57%), Positives = 22/35 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
L+E+E E EEEEEEEEEEEEEEE E
Sbjct: 391 LKEKEHPVVERWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEE 379
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEE 380
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEE 381
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEE 382
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEE 383
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEE 384
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEE 385
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEE 386
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEE 387
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEE 388
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEE 389
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEE 390
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.031
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEE 391
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 31.2 bits (71), Expect = 2.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 386 EEEEEEEEEEEEEKELENEGHCDFVKLREMLI 417
EEEEEEEEEEE+E E + EM +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQL 434
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 38.1 bits (88), Expect = 0.015
Identities = 15/58 (25%), Positives = 36/58 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E+++ E ++ E E+ + E ++ +EE + ++ + + ++E + E+E E+KELE
Sbjct: 268 SPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELE 325
Score = 37.7 bits (87), Expect = 0.018
Identities = 14/55 (25%), Positives = 34/55 (61%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E ++ E E+ + E ++ +EE + ++ + + ++E + E+E E++E E +K+ E
Sbjct: 277 ENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKRE 331
Score = 36.9 bits (85), Expect = 0.036
Identities = 13/57 (22%), Positives = 36/57 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E ++ E E+ + E ++ +EE + ++ + + ++E + E+E E++E E ++++E
Sbjct: 275 VAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKRE 331
Score = 36.1 bits (83), Expect = 0.049
Identities = 12/57 (21%), Positives = 35/57 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E ++ E E+ + E ++ +EE + ++ + + ++E + E+E E++E E +++ + +
Sbjct: 277 ENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPV 333
Score = 35.7 bits (82), Expect = 0.080
Identities = 13/56 (23%), Positives = 33/56 (58%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E ++ E E+ + E ++ +EE + ++ + + ++E + E+E E++E E ++K
Sbjct: 277 ENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREP 332
Score = 35.4 bits (81), Expect = 0.10
Identities = 16/84 (19%), Positives = 42/84 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E+++ E ++ E E+ + E ++ +EE + ++ + + ++E + E+E ++ E E
Sbjct: 267 SSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEA 326
Query: 406 HCDFVKLREMLIRTNMEDMREKTH 429
+ E L +T + + T
Sbjct: 327 QKKREPVAEDLQKTKPQVEAQPTS 350
Score = 34.6 bits (79), Expect = 0.15
Identities = 13/60 (21%), Positives = 36/60 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+++ E ++ E E+ + E ++ +EE + ++ + + ++E + E+E E++E E + + E
Sbjct: 272 DKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKRE 331
Score = 34.6 bits (79), Expect = 0.16
Identities = 13/62 (20%), Positives = 37/62 (59%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E+++ E ++ E E+ + E ++ +EE + ++ + + ++E + E+E E++E E +
Sbjct: 268 SPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQ 327
Query: 403 NE 404
+
Sbjct: 328 KK 329
Score = 34.6 bits (79), Expect = 0.18
Identities = 12/61 (19%), Positives = 36/61 (59%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ + E ++ +EE + ++ + + ++E + E+E E++E E +++ E E+ ++ + +
Sbjct: 284 EKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQ 343
Query: 405 G 405
Sbjct: 344 V 344
Score = 33.4 bits (76), Expect = 0.40
Identities = 14/61 (22%), Positives = 36/61 (59%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N E E+ + E ++ +EE + ++ + + ++E + E+E E++E E +++ E ++L
Sbjct: 278 NQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDL 337
Query: 402 E 402
+
Sbjct: 338 Q 338
Score = 32.3 bits (73), Expect = 0.94
Identities = 13/59 (22%), Positives = 33/59 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + ++ + + ++E + E+E E++E E +++ E E+ ++ + + E + NE
Sbjct: 295 EEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNE 353
Score = 30.4 bits (68), Expect = 3.3
Identities = 12/60 (20%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + ++ + + ++E + E+E E++E E +++ E E+ ++ + + E + L +
Sbjct: 295 EEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNED 354
Score = 29.6 bits (66), Expect = 6.5
Identities = 11/62 (17%), Positives = 32/62 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + + ++E + E+E E++E E +++ E E+ ++ + + E + E+ + N
Sbjct: 302 DHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNEDAIDSSNP 361
Query: 405 GH 406
+
Sbjct: 362 VY 363
Score = 29.6 bits (66), Expect = 6.9
Identities = 11/58 (18%), Positives = 32/58 (55%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE + ++ + + ++E + E+E E++E E +++ E E+ ++ + + E + +
Sbjct: 295 EEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLN 352
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 37.7 bits (87), Expect = 0.017
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E ++ E EE E E + ++ +E EE E+ +EE EE E+ + +
Sbjct: 148 LLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDF 207
Query: 404 EGHCDFVKLR 413
DF + R
Sbjct: 208 AELYDFNQCR 217
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 37.6 bits (88), Expect = 0.018
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE+ EEEEEEE E EEEEEEE+EEE++E+ ++ + E +E++ E+ EE ELE
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELELE 73
Score = 36.9 bits (86), Expect = 0.024
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEE 396
K+ +EE+ EEEEEEE E EEEEEEE+EEE++E+ ++ + E +E++ E+ EE
Sbjct: 11 KFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEEL 70
Query: 397 EEKELEN 403
E + LE+
Sbjct: 71 ELELLES 77
Score = 34.9 bits (81), Expect = 0.10
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLRE 414
EE+ EEEEEEE E EEEEEEE+EE++ E G D K+ E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITE 57
Score = 31.9 bits (73), Expect = 1.1
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 376 EEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLI 417
EE+ EEEEEEE E EEEEEEE++E + E F K + I
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEI 58
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 36.9 bits (86), Expect = 0.018
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
LE+ E EEEE+ +EEE E + E+ +++ +E ++EE+EE
Sbjct: 117 RFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 36.5 bits (85), Expect = 0.024
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+ E EEEE+ +EEE E + E+ +++ +E ++EE+EE N
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAAN 172
Score = 36.2 bits (84), Expect = 0.033
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
++ LE EEEE+ +EEE E + E+ +++ +E ++EE+EE
Sbjct: 117 RFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 35.0 bits (81), Expect = 0.064
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E+ E EEEE+ +EEE E + E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 35.0 bits (81), Expect = 0.064
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E+ E EEEE+ +EEE E + E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 35.0 bits (81), Expect = 0.064
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E+ E EEEE+ +EEE E + E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 35.0 bits (81), Expect = 0.064
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E+ E EEEE+ +EEE E + E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 35.0 bits (81), Expect = 0.064
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E+ E EEEE+ +EEE E + E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 31.5 bits (72), Expect = 1.0
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ E EEEE+ +EEE E + E+ +++ +E +KE + E
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 30.8 bits (70), Expect = 1.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+ E EEEE+ +EEE E + E+ +++ KE++ E
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEE 162
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 36.9 bits (86), Expect = 0.018
Identities = 12/58 (20%), Positives = 33/58 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L E+ + E+ + ++++ +E +++E+ ++ E EE + EE + +++ E E +
Sbjct: 7 LLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNI 64
Score = 36.5 bits (85), Expect = 0.022
Identities = 12/62 (19%), Positives = 32/62 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E+ + E+ + ++++ +E +++E+ ++ E EE + EE + +++
Sbjct: 1 PSSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENA 60
Query: 404 EG 405
EG
Sbjct: 61 EG 62
Score = 33.4 bits (77), Expect = 0.21
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E E+ + E+ + ++++ +E +++E+ ++ E EE K EN+
Sbjct: 2 SSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKK 52
Score = 28.8 bits (65), Expect = 6.9
Identities = 10/52 (19%), Positives = 29/52 (55%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVK 411
E E+ + E+ + ++++ +E +++E+ ++ E +E++NE + K
Sbjct: 2 SSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKK 53
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 37.5 bits (87), Expect = 0.019
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE E+E +E +E +++ + E E++ E + EE + E E++ EE E E ++
Sbjct: 114 KELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKF 173
Query: 402 ENEGHCDFVKLREMLIRTNMEDMR 425
E + H + L E
Sbjct: 174 EEQLHEANLDLEFKENEEQRESKW 197
Score = 35.9 bits (83), Expect = 0.056
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ L+++ + E E++ E + EE + E E++ EE E E E+ EE+ E +
Sbjct: 125 ELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDL 184
Query: 399 KELENE 404
+ ENE
Sbjct: 185 EFKENE 190
Score = 35.9 bits (83), Expect = 0.059
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE E+++E E E+E +E +E +++ + E E++ E + EE + E EK+L
Sbjct: 103 EALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKL 162
Query: 402 EN 403
E
Sbjct: 163 EE 164
Score = 35.6 bits (82), Expect = 0.079
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N +++E E E+E +E +E +++ + E E++ E + EE + E E++ EE E
Sbjct: 108 LNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLE 167
Query: 401 LENE 404
LE E
Sbjct: 168 LERE 171
Score = 34.0 bits (78), Expect = 0.27
Identities = 16/68 (23%), Positives = 33/68 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E+++E E E+E +E +E +++ + E E++ E + EE + E E + E
Sbjct: 104 ALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLE 163
Query: 405 GHCDFVKL 412
+ +
Sbjct: 164 ESLELERE 171
Score = 33.3 bits (76), Expect = 0.40
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+E++ E + EE + E E++ EE E E E+ EE+ E + E +E EE+ E
Sbjct: 136 NTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRES 195
Query: 399 KELENE 404
K +
Sbjct: 196 KWAILK 201
Score = 32.5 bits (74), Expect = 0.67
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E+++E E E+E +E +E +++ + E E++ E + EE + ENE
Sbjct: 103 EALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENE 159
Score = 32.5 bits (74), Expect = 0.69
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++ E + EE + E E++ EE E E E+ EE+ E + E +E EE+ +
Sbjct: 140 IIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAI 199
Query: 405 G 405
Sbjct: 200 L 200
Score = 31.7 bits (72), Expect = 1.4
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E + EE + E E++ EE E E E+ EE+ E + E +E EE+ E + L+
Sbjct: 143 KKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKK 202
Score = 31.3 bits (71), Expect = 1.8
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L + EE+ +++E++ E+ ++ E ++E + E E E+++E E EKEL+
Sbjct: 66 LSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELD 124
Score = 31.3 bits (71), Expect = 1.8
Identities = 16/74 (21%), Positives = 32/74 (43%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E E E+ EE+ E + E +E EE+ E + ++ + E ++ + E
Sbjct: 162 LEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAELGSQQVQGEALEL 221
Query: 405 GHCDFVKLREMLIR 418
+ F++ +
Sbjct: 222 PNESFIRSKFPSDI 235
Score = 30.6 bits (69), Expect = 2.9
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE+ +++E++ E+ ++ E ++E + E E E+++E E E+E EL
Sbjct: 69 LEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSK 128
Query: 404 E 404
E
Sbjct: 129 E 129
Score = 30.6 bits (69), Expect = 3.0
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE E E+ EE+ E + E +E EE+ E + ++ + E ++ + E E
Sbjct: 164 ESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAELGSQQVQGEALELPN 223
Query: 402 ENEGHCDF 409
E+ F
Sbjct: 224 ESFIRSKF 231
Score = 30.2 bits (68), Expect = 3.5
Identities = 15/69 (21%), Positives = 36/69 (52%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+Y + ++E + EE+ +++E++ E+ ++ E ++E + E E E++
Sbjct: 54 KRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKD 113
Query: 396 EEEKELENE 404
+E + LE E
Sbjct: 114 KELELLEKE 122
Score = 30.2 bits (68), Expect = 4.1
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + E E++ EE E E E+ EE+ E + E +E EE+ E + ++ K
Sbjct: 150 NEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAEL 209
Query: 405 G 405
G
Sbjct: 210 G 210
Score = 29.8 bits (67), Expect = 5.5
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ EE + E E++ EE E E E+ EE+ E + E +E EE+ E + K+L+
Sbjct: 149 KNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLK 204
Score = 29.4 bits (66), Expect = 6.4
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L +++E++ E+ ++ E ++E + E E E+++E E E+E +E KEL
Sbjct: 71 EQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKEL 130
Query: 402 EN 403
+
Sbjct: 131 QK 132
Score = 29.4 bits (66), Expect = 6.8
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++ EE E E E+ EE+ E + E +E EE+ E + ++ + E ++++ E
Sbjct: 158 NEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAELGSQQVQGE 217
>gnl|CDD|217148 pfam02620, DUF177, Uncharacterized ACR, COG1399.
Length = 118
Score = 35.4 bits (82), Expect = 0.019
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 18/75 (24%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEE-------EEE-----------EEEEEEEEEEEEEE 385
+ EEEE E+EE E+++EE E +E EEE E+ + E
Sbjct: 33 VPEEEEAEDEELEDDDEEILVEGDEIDLGELVEEELLLALPMKPLCSEDCKGELLCPVCG 92
Query: 386 EEEEEEEEEEEEEKE 400
EE + EEEK
Sbjct: 93 ANLNEEPCDCEEEKI 107
Score = 33.1 bits (76), Expect = 0.11
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 18/84 (21%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEE-------EEE-----------EEEEE 373
L F+ + EE E+EE E+++EE E +E EEE E+ +
Sbjct: 24 LDVDFEELFVPEEEEAEDEELEDDDEEILVEGDEIDLGELVEEELLLALPMKPLCSEDCK 83
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEE 397
E EE + EEE+
Sbjct: 84 GELLCPVCGANLNEEPCDCEEEKI 107
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for centrosome
separation and maintenance of spindle bi-polarity. TPX2
is a microtubule-associated protein that mediates the
binding of the C-terminal domain of Xklp2 to
microtubules. It is phosphorylated during mitosis in a
microtubule-dependent way.
Length = 57
Score = 33.9 bits (78), Expect = 0.019
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E E+ E +++ EE+E+ E E+EE E ++EEEEE K+L E
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKE 49
Score = 32.0 bits (73), Expect = 0.072
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E E+ E +++ EE+E+ E E+EE E ++EEEEE ++ KEL
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKEL 50
Score = 29.7 bits (67), Expect = 0.48
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+E E+ E +++ EE+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.7 bits (67), Expect = 0.48
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+E E+ E +++ EE+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.7 bits (67), Expect = 0.48
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+E E+ E +++ EE+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.7 bits (67), Expect = 0.48
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+E E+ E +++ EE+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.7 bits (67), Expect = 0.48
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+E E+ E +++ EE+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.7 bits (67), Expect = 0.48
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+E E+ E +++ EE+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.7 bits (67), Expect = 0.48
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+E E+ E +++ EE+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.7 bits (67), Expect = 0.48
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E E+ E +++ EE+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.7 bits (67), Expect = 0.48
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+E E+ E +++ EE+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.7 bits (67), Expect = 0.48
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+E E+ E +++ EE+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.3 bits (66), Expect = 0.82
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEE 369
++ LEE+E+ E E+EE E ++EEEEE
Sbjct: 12 EFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 36.0 bits (84), Expect = 0.019
Identities = 24/43 (55%), Positives = 28/43 (65%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE+EEEEE E+EEE EEE EE EEE EE ++ E EN
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFEN 43
Score = 34.1 bits (79), Expect = 0.088
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE+EEEEE E+EEE EEE EE EEE EE ++ E E + E+E E
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREE 54
Score = 34.1 bits (79), Expect = 0.10
Identities = 28/65 (43%), Positives = 35/65 (53%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE+EEEEE E+EEE EEE EE EEE EE ++ E E + E E +E +
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAI 60
Query: 407 CDFVK 411
F K
Sbjct: 61 EKFAK 65
Score = 32.6 bits (75), Expect = 0.30
Identities = 27/54 (50%), Positives = 32/54 (59%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EE+EEEEE E+EEE EEE EE EEE EE ++ E E + E E EE
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREE 54
Score = 30.6 bits (70), Expect = 1.5
Identities = 26/55 (47%), Positives = 32/55 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+EEEEE E+EEE EEE EE EEE EE ++ E E + E E EE +K
Sbjct: 3 KEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKK 57
Score = 30.3 bits (69), Expect = 2.1
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EEEEE E+EEE EEE EE EEE EE ++ E E + E E EE ++ +E
Sbjct: 4 EEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAIEK 62
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 35.6 bits (82), Expect = 0.020
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
N L++ + +E+E +E + EEE+EE +E E EEE + + + EEE E
Sbjct: 11 NQLKDVKGMLGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREV 63
Score = 34.1 bits (78), Expect = 0.065
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E+E +E + EEE+EE +E E EEE + + + EEE E
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREV 63
Score = 34.1 bits (78), Expect = 0.074
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E+E +E + EEE+EE +E E EEE + + + EEE+E
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEERE 62
Score = 33.7 bits (77), Expect = 0.10
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+E+E +E + EEE+EE +E E EEE + + + EEE E
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREV 63
Score = 33.7 bits (77), Expect = 0.10
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+E+E +E + EEE+EE +E E EEE + + + EEE E
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREV 63
Score = 33.7 bits (77), Expect = 0.10
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+E+E +E + EEE+EE +E E EEE + + + EEE E
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREV 63
Score = 33.7 bits (77), Expect = 0.10
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+E+E +E + EEE+EE +E E EEE + + + EEE E
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREV 63
Score = 32.6 bits (74), Expect = 0.29
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E+E +E + EEE+EE +E E EEE + + + EEE + +
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVM 64
Score = 31.4 bits (71), Expect = 0.62
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+E +E + EEE+EE +E E EEE + + +++E E
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEE 60
Score = 31.4 bits (71), Expect = 0.68
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 35/109 (32%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEE---------------EEE 382
G +E+E +E + EEE+EE +E E EEE + EEE E EE+
Sbjct: 21 GGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEED 80
Query: 383 EEEEEEEEEEEE---------------EEEEKELENEGHCDFVKLREML 416
EEE + EEEE E E++ E E F + L
Sbjct: 81 EEEPQAAAEEEEGRLGRKKKTPEELAAEAGEEDEEEEEKSGFPTQLKDL 129
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 37.2 bits (86), Expect = 0.021
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+ EE +E+ EE ++E+EE +E EE E E EE +E + E E EE K+L E
Sbjct: 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGE 192
Score = 34.9 bits (80), Expect = 0.11
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ E + +E+ EE +E+ EE ++E+EE +E EE E E EE +E + E E
Sbjct: 124 LQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183
Query: 404 E 404
E
Sbjct: 184 E 184
Score = 33.7 bits (77), Expect = 0.25
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 344 LEEEEEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LEE ++E+EE +E EE E E EE +E + E E EE ++ E + ++ EL
Sbjct: 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203
Query: 402 ENE 404
E
Sbjct: 204 EPG 206
Score = 30.3 bits (68), Expect = 3.4
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+E EE E E EE +E + E E EE ++ E + ++ +E E + E E
Sbjct: 156 KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELI 215
Query: 407 CDFVK 411
D VK
Sbjct: 216 SDLVK 220
Score = 29.5 bits (66), Expect = 5.1
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L+E EE E E EE +E + E E EE ++ E + ++ +E E E E E
Sbjct: 155 LKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEE 213
Score = 29.1 bits (65), Expect = 7.6
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE E EE +E + E E EE ++ E + ++ +E E E EEE +L
Sbjct: 161 LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVK 220
Query: 404 E 404
E
Sbjct: 221 E 221
>gnl|CDD|224273 COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family)
[Replication, recombination, and repair].
Length = 248
Score = 36.9 bits (86), Expect = 0.022
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 30/129 (23%)
Query: 345 EEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEE 389
EEE E+EE EE +E EE E +E E E EEE E + ++E
Sbjct: 79 EEEAEDEELEEPRDELVARLEEYERYKEAAELLAELEEERRDVFSKIKPEIKIKKERRPV 138
Query: 390 EE--------------EEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYEL 435
EE ++EE + + + E L + + + R +L
Sbjct: 139 EEISLIDLFRAYQKILRRVKQEELVEIERIVLEELSVEEQLEEL-LARLEARGVLRFSDL 197
Query: 436 YRKKRLEEE 444
+ + ++E
Sbjct: 198 FSPEERKDE 206
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 37.7 bits (87), Expect = 0.022
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
YF L + ++ EE E+ + E E++ EE E E+E+E+E E E E E E
Sbjct: 568 YFTPLASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 37.4 bits (86), Expect = 0.026
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E+ + E E++ EE E E+E+E+E E E E E E + E E +L
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSEPQLSGP 641
Query: 405 GH 406
H
Sbjct: 642 AH 643
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 34.9 bits (81), Expect = 0.022
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
L E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.2 bits (74), Expect = 0.16
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E EE+E E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 31.8 bits (73), Expect = 0.22
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E E EE+E E EEE++++E+EEEE EL
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYEL 45
Score = 31.4 bits (72), Expect = 0.29
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E EE+E E EEE++++E+EEEE E E+++
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 31.0 bits (71), Expect = 0.41
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E EE+E E EEE++++E+EEEE + L +
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLAS 48
Score = 27.2 bits (61), Expect = 8.9
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 380 EEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYR 437
E E EE+E E EEE+++ E E E + E+L ED + Y +Y
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEY-------ELLASFYHED-------QEYGIYT 60
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 37.5 bits (88), Expect = 0.023
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE EE+ E EE E EEEEE++EE++ L N
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPN 96
Score = 35.2 bits (82), Expect = 0.12
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+ N L EE+ E EE E EEEEE++EE++ E+ +
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
Score = 32.5 bits (75), Expect = 0.75
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 318 MQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
M K+ G NP + K + +E EE EE+ E EE E EEEEE
Sbjct: 30 MGKIMGENPELRSKA------KEIIPIVKEVVEEVNSLSLEEQRERLEELAPELLEEEEE 83
Query: 378 EEEEEEEEEEEEEEEEEE 395
++EE++ E+ +
Sbjct: 84 KKEEKKGLPPLPNAEKGK 101
Score = 32.5 bits (75), Expect = 0.81
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE EE+ E EE E EEEEE++EE++ E+ K
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
Score = 31.4 bits (72), Expect = 1.5
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE EE+ E EE E EEEEE++EE++ EK
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKG 100
Score = 31.0 bits (71), Expect = 2.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EE EE+ E EE E EEEEE++EE++ E+ +
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
Score = 31.0 bits (71), Expect = 2.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EE EE+ E EE E EEEEE++EE++ E+ +
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
Score = 31.0 bits (71), Expect = 2.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EE EE+ E EE E EEEEE++EE++ E+ +
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 37.5 bits (87), Expect = 0.024
Identities = 20/63 (31%), Positives = 40/63 (63%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+Y E E+EEEEE+E+++++ ++E+E+E+ EE E + +E++EE+E+
Sbjct: 130 RYREDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEEDED 189
Query: 399 KEL 401
+L
Sbjct: 190 ADL 192
Score = 36.3 bits (84), Expect = 0.051
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ E E+EEEEE+E+++++ ++E+E+E+ EE E + +E++EE E +
Sbjct: 133 EDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEEDEDADL 192
Query: 405 GHCDFVKLREML 416
D ++ +M
Sbjct: 193 SKKDVLEEPKMF 204
Score = 34.4 bits (79), Expect = 0.18
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDF 409
E+ E E+EEEEE+E+++++ ++E+E+E+ EE E + +++ E + D
Sbjct: 133 EDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEEDEDADL 192
Query: 410 VKLREMLIRTNMEDMREKTH 429
K + + E T
Sbjct: 193 SKKDVLEEPKMFKKPEEITW 212
Score = 31.7 bits (72), Expect = 1.5
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEEEE+E+++++ ++E+E+E+ EE E + +E++EE+E+ + K+ E
Sbjct: 140 EEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEEDEDADLSKKDVLE 199
Query: 405 GHCDFVKLRE 414
F K E
Sbjct: 200 EPKMFKKPEE 209
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 37.5 bits (87), Expect = 0.024
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEE 394
K + EE +E E E E +E+ +EE+ +++E EEE++ +E E
Sbjct: 2567 KLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVSG 2626
Query: 395 EEEEKELENEGH 406
++ + N GH
Sbjct: 2627 TDDTNKNHNTGH 2638
Score = 35.2 bits (81), Expect = 0.15
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N ++E E E+ + E+ + EE +E E E E +E+ +EE+ +++E ++EEE+K
Sbjct: 2556 NEIKELENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAY 2615
Query: 402 ENEG 405
E
Sbjct: 2616 SQER 2619
Score = 34.4 bits (79), Expect = 0.22
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E+ + EE +E E E E +E+ +EE+ +++E ++EEE++ +E +E+
Sbjct: 2570 EKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVSGTDD 2629
Query: 407 CD 408
+
Sbjct: 2630 TN 2631
Score = 32.9 bits (75), Expect = 0.67
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEE 397
L E+ + EE +E E E E +E+ +EE+ +++E EEE++ +E E
Sbjct: 2566 LKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVS 2625
Query: 398 EKELENEGH 406
+ N+ H
Sbjct: 2626 GTDDTNKNH 2634
Score = 32.5 bits (74), Expect = 0.82
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE E+ + E+ + EE +E E E E +E+ +EE+ +++E ++EEE++ +
Sbjct: 2561 LENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERL 2620
Query: 404 E 404
Sbjct: 2621 N 2621
Score = 32.5 bits (74), Expect = 0.83
Identities = 13/77 (16%), Positives = 32/77 (41%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E E +E+ +EE+ +++E ++EEE++ +E E ++ + +
Sbjct: 2580 ERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVSGTDDTNKNHNTGHD 2639
Query: 403 NEGHCDFVKLREMLIRT 419
+ + R +
Sbjct: 2640 ESNYGRYSNKRNDYGQV 2656
Score = 32.5 bits (74), Expect = 0.99
Identities = 12/65 (18%), Positives = 29/65 (44%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E E +E+ +EE+ +++E ++EEE++ +E E ++ + E
Sbjct: 2582 ERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVSGTDDTNKNHNTGHDES 2641
Query: 402 ENEGH 406
+
Sbjct: 2642 NYGRY 2646
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 35.8 bits (83), Expect = 0.024
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ L+ ++EE E+E+E+EE + E E+E E E+++ E + +EE++
Sbjct: 75 DKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 35.4 bits (82), Expect = 0.032
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
L ++ + ++EE E+E+E+EE + E E+E E E+++ E + +EE++
Sbjct: 72 LRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 35.0 bits (81), Expect = 0.038
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVK 411
++ + ++EE E+E+E+EE + E E+E E E+++ E + +EEK++ D
Sbjct: 75 DKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKIMF---ADTSS 131
Query: 412 LREMLIRTNMEDMREK 427
L R E M+++
Sbjct: 132 LSPEQ-RQYYEIMQKQ 146
Score = 34.7 bits (80), Expect = 0.056
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ ++EE E+E+E+EE + E E+E E E+++ E + +EE++
Sbjct: 74 RDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 33.9 bits (78), Expect = 0.086
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
++ + ++EE E+E+E+EE + E E+E E E+++ E + +EE++
Sbjct: 75 DKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 33.9 bits (78), Expect = 0.086
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
++ + ++EE E+E+E+EE + E E+E E E+++ E + +EE++
Sbjct: 75 DKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 33.9 bits (78), Expect = 0.086
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
++ + ++EE E+E+E+EE + E E+E E E+++ E + +EE++
Sbjct: 75 DKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 30.0 bits (68), Expect = 2.0
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEEEEEEEEEEEEE 391
N EE E+E++E E E+ ++ + ++EE E+E+E+EE +
Sbjct: 37 NSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMK 96
Query: 392 EEEEEEEKELENE 404
E E++ E E
Sbjct: 97 ALAEAEKERAELE 109
>gnl|CDD|224680 COG1766, fliF, Flagellar basal body M-ring protein [Cell motility
and secretion].
Length = 545
Score = 37.4 bits (87), Expect = 0.025
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E EEE + EEE+ EE + +E+ +EE+ +E + L
Sbjct: 473 GAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGKEVLLERLRE 525
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 35.9 bits (83), Expect = 0.025
Identities = 14/60 (23%), Positives = 36/60 (60%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE E+E++E +E EE+E + ++E++E++E++ E+ +++ + + K+ +
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Score = 34.7 bits (80), Expect = 0.065
Identities = 15/56 (26%), Positives = 36/56 (64%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L EE E+E++E +E EE+E + ++E++E++E++ E+ +++ + + +K
Sbjct: 90 LFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKK 145
>gnl|CDD|226246 COG3723, RecT, Recombinational DNA repair protein (RecE pathway)
[DNA replication, recombination, and repair].
Length = 276
Score = 36.7 bits (85), Expect = 0.026
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ E+E E E + EE+ E+ + E E E +E +EE E+ + EE+E E
Sbjct: 219 TAVTEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEPITES 276
Score = 34.0 bits (78), Expect = 0.17
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+E E E + EE+ E+ + E E E +E +EE E+ + EE+E E
Sbjct: 222 TEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEPITE 275
Score = 32.1 bits (73), Expect = 0.88
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+E E E + EE+ E+ + E E E +E +EE E+ + EE++ +
Sbjct: 222 TEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEPIT 274
Score = 31.0 bits (70), Expect = 1.7
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
KY E + E+E E E + EE+ E+ + E E E +E +EE E+ + E
Sbjct: 209 KYLPLSIEMQTAVTEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSE 268
Query: 399 KELE 402
++
Sbjct: 269 EKEP 272
Score = 29.0 bits (65), Expect = 6.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+E E E + EE+ E+ + E E E +E +EE E+ E +
Sbjct: 222 TEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKE 271
>gnl|CDD|236233 PRK08311, PRK08311, putative RNA polymerase sigma factor SigI;
Reviewed.
Length = 237
Score = 36.4 bits (85), Expect = 0.026
Identities = 36/97 (37%), Positives = 46/97 (47%), Gaps = 27/97 (27%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG------------HCDF 409
+EE+EEE + E E EE +EEEE EE EE EE +KEL+ G H D
Sbjct: 102 SDEEDEEENDIEIELSLEEYQEEEENEERREEIEEFKKELKEFGITFEDLVKESPKHRD- 160
Query: 410 VKLREMLIRT-----NMEDMREKTHCRHYELYRKKRL 441
RE I+ E++ EK L RKK+L
Sbjct: 161 --TRENAIKIAKTIAENEELLEK-------LKRKKKL 188
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 37.5 bits (87), Expect = 0.026
Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 342 NGLEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
LE + + E ++ E + +E+ E+E EEE + ++EEE +E E
Sbjct: 366 RSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEARE 425
Query: 398 EKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVI 448
EK N D ++ + R + +++ + +++ E +
Sbjct: 426 EKIAANSQVIDKEEVCNLYDRRDTAWQKQRFLREKQTAFERQKTEHTKIIA 476
Score = 34.0 bits (78), Expect = 0.29
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
Y L+E+ E+E EEE + ++EEE +E EE+ + ++EE
Sbjct: 387 AYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCN 442
Score = 33.7 bits (77), Expect = 0.39
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEE 396
NG E E + E + + E ++ + +E+ E+E EEE + ++E
Sbjct: 355 NGFEAERVHDLRSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDE 414
Query: 397 EEKELENE 404
EE +E
Sbjct: 415 EEVRAGDE 422
Score = 31.0 bits (70), Expect = 2.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
L + E E E + E E E ++ E +EEE EE + +EE EE
Sbjct: 738 LTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEE 792
Score = 31.0 bits (70), Expect = 2.9
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 330 KNLYSFFDCK--------YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
K + FDC EE++ + E E E + E E E ++ E
Sbjct: 711 KEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRE 770
Query: 382 EEEEEEEEEEEEEEEEEKELEN 403
+EEE EE + ++E+E
Sbjct: 771 LKEEELALLEEAIDALDEEVEE 792
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 35.4 bits (82), Expect = 0.026
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 25/86 (29%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------------------------EEEEE 378
LE +E+ ++E E+EE +++ EE++ ++EE ++EE
Sbjct: 52 LELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEE 111
Query: 379 EEEEEEEEEEEEEEEEEEEEKELENE 404
+E + EE +EEEE EE+K+ E
Sbjct: 112 KEGSKSSEESSDEEEEGEEDKQEEPV 137
Score = 30.4 bits (69), Expect = 1.4
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 20/81 (24%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------------------EEEEEE 384
E E E +E+ ++E E+EE +++ EE++ ++EE + ++
Sbjct: 48 EYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGN 107
Query: 385 EEEEEEEEEEEEEEKELENEG 405
++EE+E + EE + E EG
Sbjct: 108 KKEEKEGSKSSEESSDEEEEG 128
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 35.8 bits (83), Expect = 0.031
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E EE+ EE E EEE E E+ E EE E++ EE E++E++ E E++ +NE
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKNEA 62
Query: 406 HCDFVKLREMLIRTNMEDMREK 427
+ RE L+ + E+ +E+
Sbjct: 63 RLKVLNAREELLDSVFEEAKER 84
Score = 28.8 bits (65), Expect = 7.4
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
EE+ EE E EEE E E+ E EE E++ EE E++E++ E
Sbjct: 7 EEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAE 48
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 36.7 bits (85), Expect = 0.032
Identities = 13/65 (20%), Positives = 22/65 (33%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ E E + + E+ E + E +E EE + E+E+ E
Sbjct: 107 STGENSAESDNTSYGLSKLAEDSENIDVRPVYESDERSGISEEGSRPSKLREQEQRPTEA 166
Query: 402 ENEGH 406
EG
Sbjct: 167 YQEGD 171
Score = 33.6 bits (77), Expect = 0.35
Identities = 16/83 (19%), Positives = 29/83 (34%)
Query: 320 KVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
K P + + D K LE++ E E + E
Sbjct: 327 KAPARDEVDTNDSSPLTDSKSEEKLEDDLAHSLLGSEASERRKNREPSSSSPPSRPRSRR 386
Query: 380 EEEEEEEEEEEEEEEEEEEKELE 402
+ E+E+ E ++ + ++EEE E
Sbjct: 387 DSEDEDTERDDSDSDDEEETPAE 409
Score = 30.2 bits (68), Expect = 3.7
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E + E + E+E+ E ++ + ++EEE E +
Sbjct: 358 SLLGSEASERRKNREPSSSSPPSRPRSRRDSEDEDTERDDSDSDDEEETPAERR 411
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 35.3 bits (82), Expect = 0.032
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E EE +EEEEEE+++ ++ E+E+ E ++ + + L+
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLK 150
Score = 35.3 bits (82), Expect = 0.036
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVK 411
E EE +EEEEEE+++ ++ E+E+ E ++ + + VK
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLKVVK 153
Score = 34.9 bits (81), Expect = 0.052
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
GL+ E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 107 GLQFEPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional.
Length = 313
Score = 36.7 bits (85), Expect = 0.033
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E+ E + EE +EE EE E + E + EEE E E +E EE + E EL+
Sbjct: 121 QPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPEEETEIEVDEPEEPKPEPELD 176
Score = 35.9 bits (83), Expect = 0.051
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ + + E+ E + EE +EE EE E + E + EEE E E +E EE + E E
Sbjct: 117 QSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPEEETEIEVDEPEEPKPEPE 174
Score = 35.9 bits (83), Expect = 0.056
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E+ E + EE +EE EE E + E + EEE E E +E EE + E E +
Sbjct: 121 QPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPEEETEIEVDEPEEPKPEPELD 176
Score = 33.6 bits (77), Expect = 0.26
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+EE +EE EE E + E + EEE E E +E EE + E E +
Sbjct: 129 VEEPRDEEVLEEPEPVAAKVPMAEVQPEEETEIEVDEPEEPKPEPELD 176
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 37.2 bits (86), Expect = 0.038
Identities = 16/69 (23%), Positives = 29/69 (42%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ E + E + E++E ++ ++E EE E + EE E K L
Sbjct: 164 LDAERDRLIEATRRLSVDYVPEDDEFVDDIGDDERLTAEEVRAEVADIYEEYNERKALRR 223
Query: 404 EGHCDFVKL 412
E F+++
Sbjct: 224 EAFDAFMQI 232
>gnl|CDD|191365 pfam05756, S-antigen, S-antigen protein. S-antigens are heat
stable proteins that are found in the blood of
individuals infected with malaria.
Length = 94
Score = 34.1 bits (78), Expect = 0.038
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 316 LAMQKVPGSNPTIDKNLYSFFDCKYF--NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
L + K G DK L + + KY+ +G + + ++ E+ +EE E E ++EE+
Sbjct: 16 LYIYKTYGKVKNTDKELSNIYGTKYYLRSGFFNSKNGKGQKYEDLQEEGEGENDDEEDSN 75
Query: 374 EEEEEEEEEEEEEEEEEE 391
EE +EE E + E
Sbjct: 76 SEESNNDEENGLIEGQGE 93
Score = 28.0 bits (62), Expect = 5.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+ +EE E E ++EE+ EE +EE +E +G
Sbjct: 58 EDLQEEGEGENDDEEDSNSEESNNDEENGLIEGQG 92
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 36.3 bits (84), Expect = 0.041
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+EE EE E E+EEEE+ ++EEEE++ + + ++ L +E
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDE 186
Score = 34.8 bits (80), Expect = 0.13
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+EE EE E E+EEEE+ ++EEEE++ + + ++ ELE
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDELETST 191
Score = 33.6 bits (77), Expect = 0.26
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E+EE EE E E+EEEE+ ++EEEE++ + + ++ +E E H
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDELETSTLPAAELIAQHK 202
Query: 408 DFVKLREM 415
EM
Sbjct: 203 KNSVKLEM 210
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 36.4 bits (85), Expect = 0.043
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L + EE+++ + EE ++ EEE E+ E+E +E EEE E E E KELE
Sbjct: 62 LRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQ 121
Query: 404 E 404
E
Sbjct: 122 E 122
Score = 34.5 bits (80), Expect = 0.21
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
Y L EE+++ + EE ++ EEE E+ E+E +E EEE E E E +E E+E
Sbjct: 64 SYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI 123
Query: 399 KELE 402
+ LE
Sbjct: 124 ERLE 127
Score = 34.1 bits (79), Expect = 0.25
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
N L EE+++ + EE ++ EEE E+ E+E +E EEE E E E +E E+E E
Sbjct: 67 PKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126
Query: 399 KELEN 403
+ N
Sbjct: 127 EPWGN 131
Score = 33.0 bits (76), Expect = 0.53
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 341 FNGLEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
G E E EEE E +EE EE E+E E EE +E ++ EE E E
Sbjct: 199 KLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEI 258
Query: 395 EEEEKELENE 404
E E E ++
Sbjct: 259 ELERAEALSK 268
Score = 31.8 bits (73), Expect = 1.2
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E +EE EE E+E E EE +E ++ EE E E E E E K L+
Sbjct: 218 REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLK 271
Score = 31.8 bits (73), Expect = 1.4
Identities = 27/71 (38%), Positives = 36/71 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E +E EEE ++ E E EEE E E +EE EE E+E E EE KEL +
Sbjct: 186 LKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKY 245
Query: 406 HCDFVKLREML 416
+ + L E L
Sbjct: 246 LEELLALYEYL 256
Score = 31.1 bits (71), Expect = 2.4
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 329 DKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
K + EEE ++ E E EEE E E +EE EE E+E E E
Sbjct: 177 GYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLE 236
Query: 389 EEEEEEEEEEKEL 401
E +E ++ +EL
Sbjct: 237 ELKELAKKYLEEL 249
Score = 31.1 bits (71), Expect = 2.5
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E +EE EE E+E E EE +E ++ EE E E E E E + + +
Sbjct: 218 REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDK 274
Score = 29.9 bits (68), Expect = 5.5
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ + +EEE ++ E E EEE E E +EE EE E+E E EE +E ++ E
Sbjct: 188 ELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247
Query: 399 KELENEGHCDFVKLR-EMLIRTNMEDM 424
+ L + + R E L + D
Sbjct: 248 ELLALYEYLEIELERAEALSKFLKTDK 274
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 33.9 bits (78), Expect = 0.043
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
K + ++++++++ E + +EEE E+ EEE E+EEE E+
Sbjct: 50 KRYAYRDDDDDDDDMEAGGADIQEEERRSARLARLEDREEERLEKEEEREKRA 102
Score = 32.7 bits (75), Expect = 0.13
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++++++++ E + +EEE E+ EEE E+EEE E++ +
Sbjct: 56 DDDDDDDDMEAGGADIQEEERRSARLARLEDREEERLEKEEEREKRARKR 105
Score = 30.0 bits (68), Expect = 1.2
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 345 EEEEEEEEEEEEE---------------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E+++EE++ + +E ++++++++ E + +EEE E+
Sbjct: 28 EDDDEEDDYDRDEIWAMFNKGRKRYAYRDDDDDDDDMEAGGADIQEEERRSARLARLEDR 87
Query: 390 EEEEEEEEEKELENE 404
EEE E+EE+ +
Sbjct: 88 EEERLEKEEEREKRA 102
Score = 28.1 bits (63), Expect = 5.4
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 24/84 (28%)
Query: 345 EEEEEEEEEEEEEEEEEEEEE-------------------EEEEEEEEEEEEEEEEEEEE 385
+EEE+E+ ++ E+++EE++ ++++++++ E + +EEE
Sbjct: 16 DEEEDEDMDDFIEDDDEEDDYDRDEIWAMFNKGRKRYAYRDDDDDDDDMEAGGADIQEEE 75
Query: 386 EE-----EEEEEEEEEEEKELENE 404
E+ EEE EKE E E
Sbjct: 76 RRSARLARLEDREEERLEKEEERE 99
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 36.4 bits (84), Expect = 0.044
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 344 LEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+++EE E E E EE + +E+E EE E + ++E+E E+ E+
Sbjct: 210 QDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDG 269
Query: 400 ELENEGH 406
E + E +
Sbjct: 270 ETKPESY 276
Score = 34.5 bits (79), Expect = 0.14
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
L E E EE + +E+E EE E + ++E+E E+ E+ E + E
Sbjct: 221 ERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 33.3 bits (76), Expect = 0.37
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N EE + +E+E EE E + ++E+E E+ E+ E + E E E E ++
Sbjct: 231 INWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPESYITSEYIERISEIRK 290
Query: 401 LENEG 405
+++E
Sbjct: 291 MKDER 295
Score = 29.8 bits (67), Expect = 4.8
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E +++++EE E E E EE + +E+E EE E + + + G
Sbjct: 205 PETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHG 263
Score = 29.8 bits (67), Expect = 5.0
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +++++EE E E E EE + +E+E EE E + ++++ E
Sbjct: 205 PETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGE 264
Query: 405 GHCD 408
D
Sbjct: 265 DSED 268
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 36.4 bits (83), Expect = 0.045
Identities = 17/80 (21%), Positives = 49/80 (61%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E E+EE++ E+E+++ E+E E + + E+E+++ E+E+++ E+E+++ + N+
Sbjct: 150 ELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAI 209
Query: 408 DFVKLREMLIRTNMEDMREK 427
+ + ++ + ++E+
Sbjct: 210 ELEQEKQKTENEKQDLIKEQ 229
Score = 35.3 bits (80), Expect = 0.10
Identities = 16/53 (30%), Positives = 40/53 (75%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+G+E E+EE++ E+E+++ E+E E + + E+E+++ E+E+++ E+E+++
Sbjct: 147 SGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQK 199
Score = 32.9 bits (74), Expect = 0.57
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L + ++E E + + E E+EE++ E+E+++ E+E E + + E+E++K +
Sbjct: 130 LAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQE 189
Query: 404 EGHCDFVKLREMLIRTN----MEDMREKT 428
+ + K + I +E ++KT
Sbjct: 190 KQKTEQEKQKTSNIANKNAIELEQEKQKT 218
Score = 30.6 bits (68), Expect = 3.0
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E + ++E E + + E E+EE++ E+E+++ E+E E + + E+EK+
Sbjct: 128 IELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQ 184
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 34.4 bits (79), Expect = 0.046
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
G +EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 91 TGHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 33.6 bits (77), Expect = 0.090
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
G +EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 90 GTGHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.5 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 31.7 bits (72), Expect = 0.49
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EEEEEEEE E++++ +E + ++ ++ E EN
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAEN 128
Score = 30.5 bits (69), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+EEEEEEEE E++++ +E + ++ ++ E E E
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGE 130
Score = 30.2 bits (68), Expect = 1.4
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+EEEEEEEE E++++ +E + ++ ++ E E +E
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 29.8 bits (67), Expect = 2.1
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EEEEEEEE E++++ +E + ++ ++E
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHE 123
Score = 29.0 bits (65), Expect = 3.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 376 EEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+EEEEEEEE E++++ +E + +++ H
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQH 122
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 36.6 bits (84), Expect = 0.047
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E EE EEE+ + E + E EEE+EEEE E + E L+ EG
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPEVNPLDAEG 123
Score = 33.1 bits (75), Expect = 0.48
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVK--- 411
E EE EEE+ + E + E EEE+EEEE E + E + E L E CD +K
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPEVNPLDAEGLSGLAREA-CDALKKAL 139
Query: 412 LREMLIRTNMEDMREKTH 429
LR + R + H
Sbjct: 140 LRHRFLWQRRRQARCEQH 157
Score = 33.1 bits (75), Expect = 0.52
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
E EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 79 FAEAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 32.3 bits (73), Expect = 0.74
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
E EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 32.3 bits (73), Expect = 0.74
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
E EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 32.3 bits (73), Expect = 0.74
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 32.3 bits (73), Expect = 0.74
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 32.3 bits (73), Expect = 0.74
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 32.3 bits (73), Expect = 0.74
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 32.3 bits (73), Expect = 0.74
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 32.3 bits (73), Expect = 0.74
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 32.0 bits (72), Expect = 1.1
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 375
G E EEE+ + E + E EEE+EEEE E + E
Sbjct: 83 GEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 36.3 bits (84), Expect = 0.047
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+ +E E E E +E+ +E E EE E + + ++ EE +E +ELE E
Sbjct: 261 EEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEE 320
Score = 36.3 bits (84), Expect = 0.058
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E + EE+ +E E E E +E+ +E E EE E + + ++ EE ENE
Sbjct: 257 EMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEE 316
Query: 406 HCDFVKLRE 414
+ K+++
Sbjct: 317 LEEEYKIKK 325
Score = 32.8 bits (75), Expect = 0.56
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEE 395
++ EE+ +E E E E +E+ +E E EE E + EE +E EE
Sbjct: 258 MDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEEL 317
Query: 396 EEEKEL 401
EEE ++
Sbjct: 318 EEEYKI 323
>gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional.
Length = 903
Score = 36.4 bits (84), Expect = 0.048
Identities = 26/139 (18%), Positives = 57/139 (41%), Gaps = 11/139 (7%)
Query: 305 SSPPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEE 364
+ PP + N M++ S K +Y++ D + ++ ++ +E EE+
Sbjct: 720 ACPPLYRITN-NRMKQFNVSTKNSKKYIYTWSDEELNVLIKLLNKDYSSKETTRSVEEKG 778
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDM 424
+ + E E+E+ + + E +E E + E + + D + + + + +
Sbjct: 779 NAPDLDNEYEDEKLDNKNMRENNVDEVELKTELGTNVADTEQTDELDINKAFFKFS---- 834
Query: 425 REKTHCRHYELYRKKRLEE 443
+HYE+ R K L E
Sbjct: 835 ------KHYEIQRFKGLGE 847
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 34.1 bits (78), Expect = 0.050
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++EE EE+E+ E+ E ++E E E + EE++ + + E + +
Sbjct: 50 MQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDG 105
Score = 34.1 bits (78), Expect = 0.051
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE EE+E+ E+ E ++E E E + EE++ + + E + +
Sbjct: 52 EESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDGA 106
Score = 33.3 bits (76), Expect = 0.091
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E EE+E+ E+ E ++E E E + EE++ + + E + + K
Sbjct: 52 EESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDGAKA 108
Score = 32.5 bits (74), Expect = 0.15
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+EE EE+E+ E+ E ++E E E + EE++ + + E + +
Sbjct: 51 QEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGD 104
Score = 32.5 bits (74), Expect = 0.17
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+EE EE+E+ E+ E ++E E E + EE++ + + E +G
Sbjct: 51 QEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDG 105
Score = 31.8 bits (72), Expect = 0.32
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE EE+E+ E+ E ++E E E + EE++ + + E + +
Sbjct: 51 QEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDGAKA 108
Score = 30.2 bits (68), Expect = 0.93
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
GL E ++ ++ ++ +EE EE+E+ E+ E ++E E E + EE++ + +
Sbjct: 35 GLAEFKKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKG 90
Score = 29.8 bits (67), Expect = 1.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+EE EE+E+ E+ E ++E E E + EE++ + K
Sbjct: 51 QEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPA 96
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 35.0 bits (81), Expect = 0.051
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++ E E +EE + E E+E EE E+ E E+ ++E E+ EE + E E+ELE
Sbjct: 44 DDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELER 102
Score = 34.6 bits (80), Expect = 0.071
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEE 393
+ L E E +EE + E E+E EE E+ ++E E+ EE + E EEE E
Sbjct: 44 DDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERI 103
Query: 394 EEEEEKELENE 404
+E E E+E E
Sbjct: 104 KEAAEAEIEAE 114
Score = 32.3 bits (74), Expect = 0.43
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ E E +EE + E E+E EE E+ E E+ ++E E+ EE + E E E
Sbjct: 43 ADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEE 99
Score = 31.5 bits (72), Expect = 0.69
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEE 398
L E E+E EE E+ E E+ ++E E+ EE + E EEE E E E E E+E
Sbjct: 60 LAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERAL 119
Query: 399 KELENE 404
+EL E
Sbjct: 120 EELRAE 125
Score = 31.5 bits (72), Expect = 0.72
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ E E +EE + E E+E EE E+ E E+ ++E E+ EE + E E E
Sbjct: 43 ADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEE 99
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 36.1 bits (83), Expect = 0.051
Identities = 10/56 (17%), Positives = 27/56 (48%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+NL S + E +++E + +EEE+ ++++ E+ ++ +E+
Sbjct: 254 QNLSSNKYGDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 34.9 bits (80), Expect = 0.11
Identities = 7/42 (16%), Positives = 24/42 (57%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E +++E + +EEE+ ++++ E+ ++ +++ +N
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDN 312
Score = 34.9 bits (80), Expect = 0.12
Identities = 9/46 (19%), Positives = 25/46 (54%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
F G+ E +++E + +EEE+ ++++ E+ ++ +E+
Sbjct: 264 FKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 34.5 bits (79), Expect = 0.15
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
E +++E + +EEE+ ++++ E+ ++ + CD
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCD 311
Score = 34.5 bits (79), Expect = 0.16
Identities = 7/42 (16%), Positives = 23/42 (54%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E +++E + +EEE+ ++++ E+ ++ +E+ +
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDN 312
Score = 34.2 bits (78), Expect = 0.20
Identities = 7/43 (16%), Positives = 23/43 (53%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E +++E + +EEE+ ++++ E+ ++ +E+ +
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNG 313
Score = 34.2 bits (78), Expect = 0.20
Identities = 7/50 (14%), Positives = 24/50 (48%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ + E +++E + +EEE+ ++++ E+ ++ +E+
Sbjct: 260 KYGDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.8 bits (77), Expect = 0.23
Identities = 7/39 (17%), Positives = 22/39 (56%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E +++E + +EEE+ ++++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.8 bits (77), Expect = 0.23
Identities = 7/39 (17%), Positives = 22/39 (56%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E +++E + +EEE+ ++++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.8 bits (77), Expect = 0.23
Identities = 7/39 (17%), Positives = 22/39 (56%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E +++E + +EEE+ ++++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.8 bits (77), Expect = 0.23
Identities = 7/39 (17%), Positives = 22/39 (56%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E +++E + +EEE+ ++++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.8 bits (77), Expect = 0.23
Identities = 7/39 (17%), Positives = 22/39 (56%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E +++E + +EEE+ ++++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 32.6 bits (74), Expect = 0.56
Identities = 6/42 (14%), Positives = 22/42 (52%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E +++E + +EEE+ ++++ E+ ++ + + +
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDN 312
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 35.5 bits (82), Expect = 0.051
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 323 GSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
TI+ + Y D + + E EE E + E + EE +E E+++
Sbjct: 77 APGGTINGDGYQEPDDPTSGYASISQADRVEGEEPESIRKWRERRDLRIEERDEASEKKK 136
Query: 383 EEEEEEEEEEEEE 395
EE E+ ++E ++
Sbjct: 137 EELIEKAQKEIDD 149
Score = 33.6 bits (77), Expect = 0.25
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
NG +E ++ + + E EE E + E + EE +E E+++EE E
Sbjct: 83 NGDGYQEPDDPTSGYASISQADRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIE 141
Score = 30.9 bits (70), Expect = 1.6
Identities = 12/61 (19%), Positives = 26/61 (42%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ +E ++ + + E EE E + E + EE +E E++++EL +
Sbjct: 84 GDGYQEPDDPTSGYASISQADRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKA 143
Query: 406 H 406
Sbjct: 144 Q 144
Score = 29.7 bits (67), Expect = 4.0
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
G + +E ++ + + E EE E + E + EE +E E++KE
Sbjct: 79 GGTINGDGYQEPDDPTSGYASISQADRVEGEEPESIRKWRERRDLRIEERDEASEKKKE 137
Score = 28.9 bits (65), Expect = 7.3
Identities = 10/65 (15%), Positives = 22/65 (33%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ +E ++ + + E EE E + E + EE +E +
Sbjct: 74 EAVAPGGTINGDGYQEPDDPTSGYASISQADRVEGEEPESIRKWRERRDLRIEERDEASE 133
Query: 400 ELENE 404
+ + E
Sbjct: 134 KKKEE 138
Score = 28.6 bits (64), Expect = 9.8
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E + EE +E E+++EE E+ ++E ++ E E++E+ + + +E E+ L
Sbjct: 119 ERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQFLAE 175
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 36.1 bits (84), Expect = 0.051
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 11/55 (20%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRT 419
E+ EEE EE E E+E+ EEE+EEEE+E F +L++ L +T
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEG-----------WFERLKQGLSKT 44
Score = 35.7 bits (83), Expect = 0.056
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+ EEE EE E E+E+ EEE+EEEE+E E+
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 35.7 bits (83), Expect = 0.058
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+ EEE EE E E+E+ EEE+EEEE+E E K
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLK 38
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.9 bits (81), Expect = 0.10
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.5 bits (80), Expect = 0.15
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
G E+ EEE EE E E+E+ EEE+EEEE+E E
Sbjct: 2 GFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 32.6 bits (75), Expect = 0.56
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
+F LEEE EE E E+E+ EEE+EEEE+E E
Sbjct: 2 GFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 29.5 bits (67), Expect = 5.2
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEE 369
F K LEE E E+E+ EEE+EEEE+E E
Sbjct: 3 FFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 36.3 bits (84), Expect = 0.052
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E++ + E+ E + E E E + E E E+ E E+ +EE+ + E E
Sbjct: 251 EVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQE 310
Query: 403 NEGHCDFVKLREMLIR--TNMEDMREKTHCRHYELYRKKRLEEE 444
+ H ++ REM + ++ + R Y + +R +E
Sbjct: 311 VQ-HAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQE 353
Score = 35.6 bits (82), Expect = 0.098
Identities = 15/61 (24%), Positives = 23/61 (37%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
YF + + +EE + E + E E E EE E E+ E E+E
Sbjct: 341 SYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQE 400
Query: 399 K 399
+
Sbjct: 401 Q 401
Score = 34.4 bits (79), Expect = 0.22
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
+ E E E+ E E+ +EE+ + E+E + + E E E ++E ELE +
Sbjct: 282 KAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERS 341
Query: 408 DFVKLREMLIRTNME 422
F+ + + +
Sbjct: 342 YFINAAQRQAQEEAK 356
Score = 33.3 bits (76), Expect = 0.48
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E E +E + + +EE + E + E E E EE E ++
Sbjct: 332 ETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAA 389
Score = 32.5 bits (74), Expect = 0.76
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E ++E E E +E + + +EE + E + E E E EE E
Sbjct: 327 IERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERA 385
Score = 32.5 bits (74), Expect = 0.84
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 3/104 (2%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + E E E + E E E+ E E+ +EE+ + E+E + + E +E
Sbjct: 262 EQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEARE 321
Query: 401 LENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEE 444
+ + +E + R + K
Sbjct: 322 MRVG---LIERQKETELEPQERSYFINAAQRQAQEEAKAAANIA 362
Score = 31.7 bits (72), Expect = 1.2
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
LE +E + + +EE + E + E E E EE E E+
Sbjct: 335 LEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQ 387
Score = 31.7 bits (72), Expect = 1.3
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E E E +E + + +EE + E + E E E EE E E
Sbjct: 330 QKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAE 386
Score = 30.6 bits (69), Expect = 2.7
Identities = 12/59 (20%), Positives = 20/59 (33%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE E E ++E E E +E + + +EE + E + E
Sbjct: 317 LEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVET 375
Score = 30.2 bits (68), Expect = 4.4
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EE 392
K E + E E E + E E E+ E E+ +EE+ + E+E E
Sbjct: 259 KTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALE 318
Query: 393 EEEEEEKELEN 403
E +E
Sbjct: 319 AREMRVGLIER 329
Score = 29.8 bits (67), Expect = 5.5
Identities = 12/61 (19%), Positives = 21/61 (34%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E E ++E E E +E + + +EE + E + E +E
Sbjct: 315 KALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVE 374
Query: 403 N 403
Sbjct: 375 T 375
Score = 29.0 bits (65), Expect = 9.2
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E ++E E E +E + + +EE + E + E E E E
Sbjct: 324 VGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEA 382
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 33.2 bits (76), Expect = 0.053
Identities = 15/63 (23%), Positives = 43/63 (68%), Gaps = 7/63 (11%)
Query: 339 KYFNGLEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
K F + E E EEE+ E E EE E+++++E+++++++++++++++++++E
Sbjct: 18 KEFASIMEARTEALIEEEKVEIARSVMIEGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDE 77
Query: 392 EEE 394
++E
Sbjct: 78 DDE 80
Score = 30.5 bits (69), Expect = 0.47
Identities = 6/32 (18%), Positives = 29/32 (90%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E EE E+++++E++++++++++++++++++ E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDE 77
Score = 30.1 bits (68), Expect = 0.62
Identities = 6/35 (17%), Positives = 32/35 (91%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E EE E+++++E+++++++++++++++++++++ E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 29.0 bits (65), Expect = 1.8
Identities = 6/34 (17%), Positives = 30/34 (88%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E+++++E++++++++++++++++ + E++
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDD 79
Score = 29.0 bits (65), Expect = 1.9
Identities = 6/35 (17%), Positives = 31/35 (88%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E+++++E+++++++++++++++++ + ++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
>gnl|CDD|220504 pfam09987, DUF2226, Uncharacterized protein conserved in archaea
(DUF2226). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 252
Score = 35.7 bits (82), Expect = 0.054
Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEE 392
K N E E E E E E +E E EE EEE EE E EE +E
Sbjct: 104 KEVNDNAVVEHLLETEVEVEGGECLLKEPFTPTEYEETEEEVEEPESREELLKKLGIKEP 163
Query: 393 EEEEEEKELEN--EGHCDFVKLREMLIRT 419
+EE E LE+ E +L+ LI T
Sbjct: 164 DEESVEAILEDYFEEEDPLEELKNSLIST 192
Score = 28.4 bits (63), Expect = 10.0
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 345 EEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E EE EEE EE E EE +E +EE E E+ EEE+ EE + E
Sbjct: 135 PTEYEETEEEVEEPESREELLKKLGIKEPDEESVEAILEDYFEEEDPLEELKNSLISTAE 194
Query: 398 EKELENEGHCD 408
+ L EG D
Sbjct: 195 LRVLRMEGTVD 205
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 35.9 bits (83), Expect = 0.057
Identities = 6/40 (15%), Positives = 26/40 (65%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++E + +++++E+ E + ++ +++ +E+ E+ + +N
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTDN 289
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.069
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
++E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.1 bits (81), Expect = 0.086
Identities = 5/41 (12%), Positives = 25/41 (60%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+ +E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 248 DSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 34.7 bits (80), Expect = 0.12
Identities = 5/41 (12%), Positives = 24/41 (58%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+ E + +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 248 DSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 34.7 bits (80), Expect = 0.13
Identities = 5/40 (12%), Positives = 26/40 (65%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
++E + +++++E+ E + ++ +++ +E+ ++L + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTDN 289
Score = 32.8 bits (75), Expect = 0.51
Identities = 5/39 (12%), Positives = 22/39 (56%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
G +++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
>gnl|CDD|187822 cd09691, Cas8b_I-B, CRISPR/Cas system-associated protein Cas8b.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Zn-finger domain containing protein, distant homologs of
Cas8 proteins; signature gene for I-B subtype; also
known as Csh1 family.
Length = 381
Score = 35.9 bits (83), Expect = 0.059
Identities = 33/227 (14%), Positives = 82/227 (36%), Gaps = 14/227 (6%)
Query: 157 VKLKEDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFIC-PTGHGLKSLD 215
K+ K I ++ + QF L+E ++ ++ + + + F+ + +
Sbjct: 70 FDTKKSKIKKIFEFKNTQFNINLREIKGLEEQISEDFTDGEGLRVDFLFYEKEKAAEKIV 129
Query: 216 LVCMKKLDSKV-NIIPIIAKADTISK--SELQKFKTNIMTELTSNGVHIYEFPTDDETMS 272
L S++ I+ + K + +K E++ + + F D E
Sbjct: 130 LYIKDVEPSRIEKILELEKKVENYNKEIGEIENLNLGLDNIYFLIPLSKDNFFEDRE--- 186
Query: 273 DVNAAMTIFSSIPCDRSLIHTIFPPCLRSTSPSSPPHFHSLNILAMQKVPGSNPTIDKNL 332
+N IF D+ + T F +++ F + +I ++ + + + K
Sbjct: 187 FLNLLDAIFRGGKIDKDTLLTWFVKKIKNEF------FENDSISSLNLIKINKRYLLKAG 240
Query: 333 YSFF-DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
DC + LE + E ++ + E+ E ++ + ++
Sbjct: 241 LQANLDCLLLDKLELISRGDSLLEVKDVKREDLNEYVKKFFDSPQKR 287
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 36.2 bits (83), Expect = 0.059
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ EEE+ E++ + + ++ +E+ E++ E E + EE E E E EEE +LE +
Sbjct: 126 SDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDD 185
Query: 406 HCD 408
D
Sbjct: 186 GED 188
>gnl|CDD|220438 pfam09845, DUF2072, Zn-ribbon containing protein (DUF2072). This
archaeal protein has no known function.
Length = 121
Score = 34.0 bits (78), Expect = 0.060
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
K F + E + + + EE+ EE E E +EE E +++ E+ EE E E
Sbjct: 27 GKKFLYVRERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
Score = 30.1 bits (68), Expect = 1.3
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + + + EE+ EE E E +EE E +++ E+ EE E E
Sbjct: 35 ERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
Score = 30.1 bits (68), Expect = 1.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E + + + EE+ EE E E +EE E +++ E+ EE E E
Sbjct: 35 ERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
Score = 30.1 bits (68), Expect = 1.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E + + + EE+ EE E E +EE E +++ E+ EE E E
Sbjct: 35 ERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
Score = 30.1 bits (68), Expect = 1.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E + + + EE+ EE E E +EE E +++ E+ EE E E
Sbjct: 35 ERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
Score = 29.7 bits (67), Expect = 2.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E + + + EE+ EE E E +EE E +++ E+ EE + +E
Sbjct: 35 ERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 36.1 bits (83), Expect = 0.066
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L+E+ E+E E+E + +E + E EE+ E E+EE ++ +EEE++ ++EKE+
Sbjct: 674 KSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKIKQEKEI 733
Score = 32.6 bits (74), Expect = 0.76
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + +E+ E+E E+E + +E + E EE+ E E+EE ++ +EEE++++ E
Sbjct: 671 AEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKIKQE 730
Score = 32.6 bits (74), Expect = 0.82
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ LE+E E+E + +E + E EE+ E E+EE ++ +EEE++ ++E+E
Sbjct: 680 ISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKIKQEKE 732
Score = 32.2 bits (73), Expect = 0.95
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
++ E E + +E+ E+E E+E + +E + E EE+ E E+EE +K E E
Sbjct: 667 KDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQK 726
Score = 32.2 bits (73), Expect = 1.0
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E+ E+E E+E + +E + E EE+ E E+EE ++ +EEE++ ++E E
Sbjct: 677 QEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKIKQEKE 732
Score = 30.7 bits (69), Expect = 2.8
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E E + +E+ E+E E+E + +E + E EE+ E E+EE ++ ++E
Sbjct: 668 DLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEE 723
Score = 30.7 bits (69), Expect = 3.3
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E ++ E E + +E+ E+E E+E + +E + E EE+ + E E
Sbjct: 655 MVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQE 714
Query: 405 GHCDFVKLREMLIRTNME 422
+ + E I+ E
Sbjct: 715 ENMQKLDEEEQKIKQEKE 732
Score = 29.9 bits (67), Expect = 5.4
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ E E + +E+ E+E E+E + +E + E EE+ E E+EE ++ E E
Sbjct: 665 RAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEE 724
Score = 29.9 bits (67), Expect = 5.4
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E E E ++ E E + +E+ E+E E+E + +E + E EE+ E+ +
Sbjct: 654 CMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQ 713
Query: 403 NEGHC 407
E
Sbjct: 714 EENMQ 718
Score = 29.9 bits (67), Expect = 5.5
Identities = 21/80 (26%), Positives = 34/80 (42%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L+ E E E ++ E E + +E+ E+E E+E + +E + E EEK
Sbjct: 651 QLKCMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIER 710
Query: 403 NEGHCDFVKLREMLIRTNME 422
E + KL E + E
Sbjct: 711 AEQEENMQKLDEEEQKIKQE 730
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyzes
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 34.7 bits (80), Expect = 0.067
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E ++++ EE EEEEE+EE+ E E + ++ + E E E+
Sbjct: 7 IIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATS 60
Score = 34.7 bits (80), Expect = 0.069
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEK 399
+E+ ++ + E ++++ EE EEEEE+EE+ E E + ++ + E E E+
Sbjct: 1 MEDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATS 60
Query: 400 ELEN 403
+
Sbjct: 61 NPKQ 64
Score = 34.3 bits (79), Expect = 0.098
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E ++++ EE EEEEE+EE+ E E + ++ + E E E+ K++
Sbjct: 11 ESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATSNPKQV 65
Score = 32.8 bits (75), Expect = 0.29
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL---REMLIRTNMED 423
E+ ++ + E ++++ EE EEEEE+EE+ E +K + N+ED
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIED 57
Score = 30.8 bits (70), Expect = 1.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+++ EE EEEEE+EE+ E E + ++ + E E E+ ++ EK
Sbjct: 14 DDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATSNPKQVSEK 68
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 35.1 bits (81), Expect = 0.070
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE + E E EE+ + E E E + +E+ + E++ ++ + + K
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKP 107
Score = 33.2 bits (76), Expect = 0.33
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
LE EE + E E EE+ + E E E + +E+ + E++ ++ + + + K
Sbjct: 49 LEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKP 105
Score = 30.9 bits (70), Expect = 1.7
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE + E E EE+ + E E E + +E+ + E++ ++ + + + + + K
Sbjct: 54 EEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPK 108
Score = 30.5 bits (69), Expect = 2.0
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE + E E EE+ + E E E + +E+ + E++ ++ + + + + + +
Sbjct: 53 TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPK 108
Score = 30.1 bits (68), Expect = 3.1
Identities = 10/56 (17%), Positives = 28/56 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + E E EE+ + E E E + +E+ + E++ ++ + + + + + + +
Sbjct: 55 EPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPK 110
Score = 29.4 bits (66), Expect = 5.0
Identities = 10/55 (18%), Positives = 27/55 (49%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E EE+ + E E E + +E+ + E++ ++ + + + + + + + K
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKP 113
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 34.7 bits (80), Expect = 0.071
Identities = 22/72 (30%), Positives = 46/72 (63%), Gaps = 11/72 (15%)
Query: 344 LEEEEEEEEEEEEEEEE-----------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+EE EE+ ++ E+E ++ E+EE E+ EEE+E +EE+ ++EE+E++
Sbjct: 63 VEETEEKVDQYEKENKDSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKM 122
Query: 393 EEEEEEKELENE 404
+E++++E+ +E
Sbjct: 123 AKEKDKQEIIDE 134
Score = 32.8 bits (75), Expect = 0.31
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN---------EGHC 407
E+EE E+ EEE+E +EE+ ++EE+E++ +E++++E ELE H
Sbjct: 91 EQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQEIIDELETSNLPANVIIAQHK 150
Query: 408 DFVKLREMLIR 418
K E +
Sbjct: 151 KQSKQLESQVE 161
Score = 31.7 bits (72), Expect = 0.76
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
N E+EE E+ EEE+E +EE+ ++EE+E++ +E++++E
Sbjct: 84 NKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQE 130
Score = 29.7 bits (67), Expect = 3.1
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEK 399
NG++ EE EE+ ++ E+E ++ + E+EE E+ EEE+E +EE ++EE+
Sbjct: 59 NGIDVEETEEKVDQYEKENKDSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQ 118
Query: 400 ELENEGHCDFVKLREMLIRTNM 421
E + D ++ + L +N+
Sbjct: 119 EQKMAKEKDKQEIIDELETSNL 140
Score = 29.0 bits (65), Expect = 6.4
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 327 TIDKNLY-SFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
+I +N + + EEE+E +EE+ ++EE+E++ +E++++E
Sbjct: 80 SIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQE 130
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 36.1 bits (84), Expect = 0.071
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E++ EE+E+ EE ++EEEEEEEE ++ + ELE
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 33.8 bits (78), Expect = 0.31
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E++ EE+E+ EE ++EEEEEEEE ++ + E EL
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELEL 366
Score = 33.4 bits (77), Expect = 0.50
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E++ EE+E+ EE ++EEEEEEEE ++ +E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.6 bits (75), Expect = 0.83
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E++ EE+E+ EE ++EEEEEEEE ++ + E E L
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELELGYGL 370
Score = 32.6 bits (75), Expect = 0.86
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
L + +E++ EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 323 LSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.2 bits (74), Expect = 0.95
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+E++ EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.2 bits (74), Expect = 0.95
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+E++ EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.2 bits (74), Expect = 0.95
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+E++ EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.2 bits (74), Expect = 0.95
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E++ EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.2 bits (74), Expect = 0.95
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+E++ EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.2 bits (74), Expect = 0.95
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+E++ EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.2 bits (74), Expect = 0.95
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+E++ EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.2 bits (74), Expect = 0.95
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+E++ EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.2 bits (74), Expect = 0.95
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+E++ EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 30.3 bits (69), Expect = 4.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
++ EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 324 SKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 35.9 bits (83), Expect = 0.072
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+E + EE+ + +++E+++EE + +EE++E+ E E+ +E EE KE
Sbjct: 335 SSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKE-----K 389
Query: 407 CD---FVKLREMLIRTNMEDMR---EKTHCRHYELYRKKRLEEE 444
D FV L + + + ++ + + HYEL ++K E E
Sbjct: 390 GDLSIFVALSLSEVEEDGDKVKISFDSSKAMHYELMKEKLPELE 433
>gnl|CDD|227199 COG4862, MecA, Negative regulator of genetic competence,
sporulation and motility [Posttranslational
modification, protein turnover, chaperones / Signal
transduction mechanisms / Cell motility and secretion].
Length = 224
Score = 35.1 bits (81), Expect = 0.074
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ + E E ++ +E + +E+ EE E+ EE+ ++ E+EE+ +E E+E L
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYLY 131
Score = 34.3 bits (79), Expect = 0.13
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ + E E ++ +E + +E+ EE E+ EE+ ++ E+EE+ +E E+E +
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDY 129
Score = 33.9 bits (78), Expect = 0.15
Identities = 19/79 (24%), Positives = 37/79 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E E ++ +E + +E+ EE E+ EE+ ++ E+EE+ +E E+E + L
Sbjct: 78 SKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYLYYILRFA 137
Query: 405 GHCDFVKLREMLIRTNMED 423
D + L + L
Sbjct: 138 DFEDVISLSKNLKFEGETS 156
Score = 33.9 bits (78), Expect = 0.17
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ + E E ++ +E + +E+ EE E+ EE+ ++ E+EE+ +E E+E +
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 33.9 bits (78), Expect = 0.17
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ + E E ++ +E + +E+ EE E+ EE+ ++ E+EE+ +E E+E +
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 33.5 bits (77), Expect = 0.23
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+ + + L+E + +E+ EE E+ EE+ ++ E+EE+ +E E+E +
Sbjct: 81 EGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 33.5 bits (77), Expect = 0.25
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
G ++ +E + +E+ EE E+ EE+ ++ E+EE+ +E E+E +
Sbjct: 83 EGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 33.5 bits (77), Expect = 0.25
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFV 410
+ + E E ++ +E + +E+ EE E+ EE+ ++ E+EE+ E E D++
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYL 130
Score = 33.1 bits (76), Expect = 0.32
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+E E ++ +E + +E+ EE E+ EE+ ++ E+EE+ +E E+E +
Sbjct: 80 IEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 32.4 bits (74), Expect = 0.48
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
G ++ +E + +E+ EE E+ EE+ ++ E+EE+ +E E+E +
Sbjct: 81 EGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 32.0 bits (73), Expect = 0.67
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E ++ +E + +E+ EE E+ EE+ ++ E+EE+ +E E+E +
Sbjct: 80 IEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 32.0 bits (73), Expect = 0.69
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + E E ++ +E + +E+ EE E+ EE+ ++ E+EE+ E E E
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKE 126
Score = 31.6 bits (72), Expect = 1.0
Identities = 13/52 (25%), Positives = 31/52 (59%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ + E E ++ +E + +E+ EE E+ EE+ ++ E+EE+ +E ++ +
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 30.1 bits (68), Expect = 3.0
Identities = 12/57 (21%), Positives = 32/57 (56%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFV 410
+ + E E ++ +E + +E+ EE E+ EE+ ++ E+EE+ ++ + + ++
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYLYYI 133
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 35.5 bits (83), Expect = 0.077
Identities = 9/50 (18%), Positives = 9/50 (18%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EEE E E E E E K
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Score = 35.2 bits (82), Expect = 0.095
Identities = 8/49 (16%), Positives = 9/49 (18%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+EEE E E E E E
Sbjct: 76 IEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
Score = 35.2 bits (82), Expect = 0.12
Identities = 8/50 (16%), Positives = 8/50 (16%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Score = 34.4 bits (80), Expect = 0.18
Identities = 8/48 (16%), Positives = 8/48 (16%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
Score = 34.4 bits (80), Expect = 0.18
Identities = 8/48 (16%), Positives = 8/48 (16%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
Score = 34.4 bits (80), Expect = 0.18
Identities = 8/48 (16%), Positives = 8/48 (16%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
Score = 34.4 bits (80), Expect = 0.18
Identities = 8/48 (16%), Positives = 8/48 (16%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 35.6 bits (82), Expect = 0.077
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+EEE E+E E+ +EEE + EE +E E++EE +E +EE+E E+ + E
Sbjct: 384 IEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKMEAS 442
Score = 35.2 bits (81), Expect = 0.094
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE E+ +E + EEE E+E E+ +EEE + EE +E E++EE KEL E
Sbjct: 371 EEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKE 429
Score = 34.8 bits (80), Expect = 0.14
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E + EEE E+E E+ +EEE + EE +E E++EE +E +EEKEL +
Sbjct: 378 VKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEK 436
Score = 34.4 bits (79), Expect = 0.19
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 343 GLEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EEE E+E E+ +EEE EE +E E++EE +E +EE+E E+ + E
Sbjct: 382 RQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKMEA 441
Query: 395 EEEEKELENE 404
E EK
Sbjct: 442 SEVEKLFGRA 451
Score = 34.0 bits (78), Expect = 0.22
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
C L E E++ EE E+ +E + EEE E+E E+ +EEE + EE +E
Sbjct: 356 CGPEPPLLERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKEL 415
Query: 398 EKELEN 403
E++ EN
Sbjct: 416 EQDEEN 421
Score = 34.0 bits (78), Expect = 0.24
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++E + EEE E+E E+ +EEE + EE +E E++EE +E +EE+E ++L
Sbjct: 378 VKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKL 437
Query: 402 ENE 404
+ E
Sbjct: 438 KME 440
Score = 29.4 bits (66), Expect = 6.8
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 344 LEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
LE+E E+ +EEE EE +E E++EE +E +EE+E E+ + E E E+
Sbjct: 388 LEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKMEASEVEKL 447
Query: 397 EEKEL 401
+ L
Sbjct: 448 FGRAL 452
>gnl|CDD|226475 COG3966, DltD, Protein involved in D-alanine esterification of
lipoteichoic acid and wall teichoic acid (D-alanine
transfer protein) [Cell envelope biogenesis, outer
membrane].
Length = 415
Score = 35.5 bits (82), Expect = 0.088
Identities = 41/162 (25%), Positives = 62/162 (38%), Gaps = 19/162 (11%)
Query: 124 DSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKEDSFKSIVD---YIDNQFEAYLQ 180
D LF+ + +S P H ++K + +E E KS + I N++
Sbjct: 213 DLLFSATSKSGPLKHIKKALKDLPDQFSYKELEKLAVEIGKKSTTNNPFGIKNKY----- 267
Query: 181 EELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVN--IIPIIAK-ADT 237
KIK D++ + Y P L+ L L KK + V IIP+ K D
Sbjct: 268 YIKKIKPKYKKLKDSQKNFT-YLESPEYQDLQLL-LDTFKKAGADVIFVIIPVNGKWYDY 325
Query: 238 I--SKSELQKFKTNIMTELTSNGVH-IYEFPTDDET---MSD 273
+K Q + I ++L S G I +F D M D
Sbjct: 326 TGLNKDGRQAYYKKIKSQLRSQGFTQIADFSDDGYEPYFMKD 367
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 32.7 bits (75), Expect = 0.091
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
LE ++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 46 LEVTDKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 32.7 bits (75), Expect = 0.099
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++ +E++EE EE++EE E ++EEE E+ + G
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAGCGG 89
Score = 32.3 bits (74), Expect = 0.12
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
++ +E++EE EE++EE E ++EEE E+ +L + G
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAGCG 88
Score = 32.3 bits (74), Expect = 0.15
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
Y ++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 44 DYLEVTDKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 31.9 bits (73), Expect = 0.21
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
L + E ++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 37 TDLYYRTDYLEVTDKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 31.5 bits (72), Expect = 0.26
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 31.5 bits (72), Expect = 0.26
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 31.5 bits (72), Expect = 0.26
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 31.5 bits (72), Expect = 0.26
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 31.5 bits (72), Expect = 0.26
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 31.5 bits (72), Expect = 0.26
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 31.5 bits (72), Expect = 0.26
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 30.4 bits (69), Expect = 0.60
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++ +E++EE EE++EE E ++EEE E+ + G
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAGCGGGG 91
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 35.8 bits (83), Expect = 0.095
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
N LE EE EEE EE EE + E+ + E++ ++E+ +
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 35.0 bits (81), Expect = 0.16
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E E EE EEE EE EE + E+ + E++ ++E+ + L
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQLGL 868
Score = 34.6 bits (80), Expect = 0.20
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E EE EEE EE EE + E+ + E++ ++E+ +L
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQLG 867
Score = 34.6 bits (80), Expect = 0.20
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+ E E EE EEE EE EE + E+ + E++ ++E+ +
Sbjct: 822 VKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 34.6 bits (80), Expect = 0.21
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 325 NPTIDKNLYSFFDCKYF----NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
P ++ +L F K N L + + E E EE EEE EE EE + E+ +
Sbjct: 794 RPNLEIDLEEFIAVKGIKAKGNRLTTYKVKTINELEPLPYEEPEEETAEEPEEVDPEDVK 853
Query: 381 EEEEEEEEEEEE 392
E++ ++E+ +
Sbjct: 854 SEDDIDDEDTGQ 865
Score = 33.4 bits (77), Expect = 0.40
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E E EE EEE EE EE + E+ + E++ ++E+ +
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 33.4 bits (77), Expect = 0.40
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E E EE EEE EE EE + E+ + E++ ++E+ +
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 33.4 bits (77), Expect = 0.40
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E E EE EEE EE EE + E+ + E++ ++E+ +
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 33.4 bits (77), Expect = 0.40
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E E EE EEE EE EE + E+ + E++ ++E+ +
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 33.1 bits (76), Expect = 0.59
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E EE EEE EE EE + E+ + E++ + E+ G
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTG 864
Score = 32.3 bits (74), Expect = 0.94
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E E EE EEE EE EE + E+ + E++ + E +
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQL 866
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 32.9 bits (76), Expect = 0.098
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ +EE E+E EE + E E +E E E E E++ E+E EE+ EL+
Sbjct: 33 QAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDELKRSF 86
Score = 31.8 bits (73), Expect = 0.24
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
L++ +EE E+E EE + E E +E E E E E++ E+E EE+ +E
Sbjct: 31 LKQAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDE 81
Score = 31.4 bits (72), Expect = 0.40
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ +EE E+E EE + E E +E E E E E++ E+E EE+ +E K
Sbjct: 33 QAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDELKR 84
Score = 30.6 bits (70), Expect = 0.66
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE E+E EE + E E +E E E E E++ E+E EE+ +E + + KE
Sbjct: 36 EEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDELKRSFNKNKE 91
Score = 30.6 bits (70), Expect = 0.74
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ +EE E+E EE + E E +E E E E E++ E+E EE+ +E
Sbjct: 33 QAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDE 81
Score = 30.6 bits (70), Expect = 0.74
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ +EE E+E EE + E E +E E E E E++ E+E EE+ +E
Sbjct: 33 QAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDE 81
Score = 30.2 bits (69), Expect = 0.85
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+EE E+E EE + E E +E E E E E++ E+E EE+ +E + K
Sbjct: 35 KEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDELKRSFNK 88
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 35.3 bits (81), Expect = 0.10
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
L + E EE +EE+ E E+ EE ++ E E +E+
Sbjct: 353 AEGELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEVAPKED 409
Score = 34.6 bits (79), Expect = 0.16
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E EE +EE+ E E+ EE ++ E E +E+ K +
Sbjct: 358 LQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEVAPKEDAKVTK 414
Score = 33.4 bits (76), Expect = 0.40
Identities = 15/56 (26%), Positives = 21/56 (37%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E E + E EE +EE+ E E+ EE ++ E E KE
Sbjct: 354 EGELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEVAPKED 409
Score = 33.4 bits (76), Expect = 0.41
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 320 KVPGSNPTI---DKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
K+PG N + ++Y + + L E E E E + E EE +EE+
Sbjct: 318 KIPGLNWAPIPLEGDVYGYQPPGWHEPLFEVGPETAEGELLQFEAEEIYNDEEQYTRPVY 377
Query: 377 EEEEEEEEEEEEEEEEEEEEEEKELE 402
E E+ EE ++ E +E
Sbjct: 378 ENEDFEERVDDVSNGGLAEFAPAAVE 403
Score = 33.4 bits (76), Expect = 0.41
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + E EE +EE+ E E+ EE ++ E E +E+ +
Sbjct: 356 ELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEVAPKEDAK 411
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 34.2 bits (79), Expect = 0.10
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 332 LYSFFDCKYFNGLEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+F K + L EE + + E +E+E EEE EE EE++EEEE + EE
Sbjct: 105 EANFLKKKKLDKLLEEYIKFGFGKLKIDVEVDEDESSEEEIEEFEEQKEEEEAKLAEEAL 164
Query: 385 EEEEEEEEEEEEEEKE 400
E +++E E++++EKE
Sbjct: 165 EALKKKEAEKKKKEKE 180
Score = 30.8 bits (70), Expect = 1.4
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E +E+E EEE EE EE++EEEE + EE E K+ E E
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEK 174
Score = 29.2 bits (66), Expect = 4.2
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E +E+E EEE EE EE++EEEE + EE E ++KE E
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAE 173
>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3),
N-terminal domain. Autophagocytosis is a
starvation-induced process responsible for transport of
cytoplasmic proteins to the lysosome/vacuole. Atg3 is a
ubiquitin like modifier that is topologically similar to
the canonical E2 enzyme. It catalyzes the conjugation of
Atg8 and phosphatidylethanolamine.
Length = 146
Score = 33.8 bits (78), Expect = 0.10
Identities = 10/62 (16%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 345 EEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E + EE E+E+E++ ++++++ +EE+ E +++++ + + +E+++
Sbjct: 83 EYGDGAEEIVEDEDEDDGWVTTHGNRDKQKDDIADEEDIPEIGDDDDDVVDSSDADEDDD 142
Query: 397 EE 398
++
Sbjct: 143 DD 144
Score = 33.5 bits (77), Expect = 0.14
Identities = 11/65 (16%), Positives = 38/65 (58%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+Y +G EE E+E+E++ ++++++ +EE+ E +++++ + + +E+
Sbjct: 81 QMEYGDGAEEIVEDEDEDDGWVTTHGNRDKQKDDIADEEDIPEIGDDDDDVVDSSDADED 140
Query: 397 EEKEL 401
++ ++
Sbjct: 141 DDDDI 145
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 35.3 bits (82), Expect = 0.10
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +E+E EE + E E+E+ E+ E EE + EE K + E
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKAIHPE 307
Score = 33.0 bits (76), Expect = 0.49
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E +E+E EE + E E+E+ E+ E EE + EE + E
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKAIHPE 307
Score = 32.6 bits (75), Expect = 0.64
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+Y+ +E+E EE + E E+E+ E+ E EE + EE + E E
Sbjct: 257 EYYGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKAIHPEPGTFFPYEP 316
Query: 399 KELENEGHCDFVKLREM 415
E V L++
Sbjct: 317 TPPHIEKT---VDLQKD 330
Score = 32.2 bits (74), Expect = 0.99
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEE 392
+ +Y +E EE + E E+E+ E+ E EE + EE + E E
Sbjct: 259 YGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKAIHPEPGTFFPYEPTP 318
Query: 393 EEEEEEKELENE 404
E+ +L+ +
Sbjct: 319 PHIEKTVDLQKD 330
>gnl|CDD|219905 pfam08564, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37 pfam03234.
Length = 89
Score = 32.7 bits (75), Expect = 0.11
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 56 VPNAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.28
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
N E E+E +E EEE EEE E+EE EEE+E
Sbjct: 57 PNAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 30.8 bits (70), Expect = 0.49
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E E+E +E EEE EEE E+EE EEE E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 30.4 bits (69), Expect = 0.56
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ E E+E +E EEE EEE E+EE EEE++
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 35.0 bits (81), Expect = 0.11
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L E EEEE E +++ + E+ E E + EE E EE+E +++++E K+ E
Sbjct: 144 ALLEVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQRE 203
Query: 403 NEGH 406
E
Sbjct: 204 KETA 207
Score = 30.4 bits (69), Expect = 2.6
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 344 LEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
LE EEEE E E+ E E + EE E EE+E +++++E ++ E+E
Sbjct: 146 LEVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKE 205
Query: 396 EEEK 399
EK
Sbjct: 206 TAEK 209
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 34.2 bits (79), Expect = 0.11
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K L++E E+ E E ++ EEE + +E E+ E+ +++ +++EEE
Sbjct: 9 KLAELLKKEREDTIENVERKQALTEEERQASADESSEDASEDGSDDDSDDDEEEPIYNPL 68
Query: 399 K 399
Sbjct: 69 N 69
Score = 33.4 bits (77), Expect = 0.18
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EEE + +E E+ E+ +++ +++EEE L
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEEPIYNPLNL 70
Score = 33.4 bits (77), Expect = 0.22
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE + +E E+ E+ +++ +++EE+ + N
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEEPIYNP 67
Score = 31.8 bits (73), Expect = 0.60
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EEE + +E E+ E+ +++ +++EEE L
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEEPIYNPLN 69
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 34.0 bits (78), Expect = 0.11
Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 19/154 (12%)
Query: 115 TGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQENNVKLKEDSFKSIVDY--ID 172
G+GKS+L+++L + + EL + VKL +VD +D
Sbjct: 6 GGVGKSSLLNALLGGEVGEVSDVPG-TTRDPDVYVKELDKGKVKLV------LVDTPGLD 58
Query: 173 NQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKS--LDLVCMKKLDSKVNIIP 230
L E + L + L + T + L+ + + II
Sbjct: 59 E--FGGLGREELARLLL-----RGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPIIL 111
Query: 231 IIAKADTISKSELQKFKTNIMTELTSNGVHIYEF 264
+ K D + + E+++ GV ++E
Sbjct: 112 VGNKIDLLEEREVEELLRLEELAK-ILGVPVFEV 144
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 35.2 bits (81), Expect = 0.12
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 23/94 (24%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------------- 381
E ++E + E E EE EEE + + +E
Sbjct: 240 VQEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQKRTTRRVKMR 299
Query: 382 ----EEEEEEEEEEEEEEEEEKELENEGHCDFVK 411
+ +E E + EE +L+ + +F+
Sbjct: 300 PVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLG 333
Score = 35.2 bits (81), Expect = 0.12
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
GL E +EEE ++E + E E EE EEE + + +E
Sbjct: 235 GLSELVQEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 34.4 bits (79), Expect = 0.16
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E E + EE + +E+ E +E++E+E++EE +EE E+++K
Sbjct: 304 KPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKV 360
Score = 32.5 bits (74), Expect = 0.71
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E E + EE + +E+ E +E++E+E++EE +EE E++++ K
Sbjct: 307 DEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVK 361
Score = 32.1 bits (73), Expect = 0.87
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E E + EE + +E+ E +E++E+E++EE +EE E++++ +
Sbjct: 306 SDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVK 361
Score = 31.7 bits (72), Expect = 1.3
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ +E E + EE + +E+ +E++E+E++EE +EE E++++ ++K
Sbjct: 304 KPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKK 363
Score = 30.9 bits (70), Expect = 2.3
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
L E + EE + +E+ E +E++E+E++EE +EE E++++ +
Sbjct: 310 SLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVK 361
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 35.4 bits (82), Expect = 0.12
Identities = 15/63 (23%), Positives = 23/63 (36%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LEE +E EEE EE E+ +E E + E + + +E
Sbjct: 511 EKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPVPAEEA 570
Query: 402 ENE 404
+ E
Sbjct: 571 KVE 573
Score = 33.1 bits (76), Expect = 0.55
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E EEE EE E+ +E E + E + + EE + E +E
Sbjct: 518 KELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPVPAEEAKVEAVDE 577
Score = 32.3 bits (74), Expect = 0.88
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 333 YSFFDCKYFNGLEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ E EE+E EE EE +E EEE EE E+ +E E
Sbjct: 485 LGLPEPIIEEAKTEFGEEKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGG 544
Query: 388 EEEEEEEEEEEKELENEG 405
+ E + + L + G
Sbjct: 545 KTSLLELKAQIVVLAHMG 562
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E E+E + + E EEEE++E++EE+++EE K
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLKARA 326
Score = 34.2 bits (79), Expect = 0.21
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E E+E + + E EEEE++E++EE+++EE + +E K+
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLKARAWDEFKD 332
Score = 33.8 bits (78), Expect = 0.24
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
LE+E + + E EEEE++E++EE+++EE +
Sbjct: 284 LEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 32.7 bits (75), Expect = 0.54
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
++E E+E + + E EEEE++E++EE+++EE +
Sbjct: 280 VDEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 32.7 bits (75), Expect = 0.58
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+E E+E + + E EEEE++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 32.7 bits (75), Expect = 0.58
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+E E+E + + E EEEE++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 32.7 bits (75), Expect = 0.58
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E E+E + + E EEEE++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 30.3 bits (69), Expect = 2.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
+ E EEEE++E++EE+++EE +
Sbjct: 292 GVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta,
and epsilon subunits with a stoichiometry of 3:3:1:1:1.
Alpha and beta subunit form the globular catalytic
moiety, a hexameric ring of alternating subunits. Gamma,
delta and epsilon subunits form a stalk, connecting F1
to F0, the integral membrane proton translocating
domain. In bacteria, which is lacking a eukaryotic
epsilon subunit homolog, this subunit is called the
epsilon subunit.
Length = 123
Score = 33.3 bits (77), Expect = 0.12
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E E E+ + E EE E EE + ++E E+ E LE
Sbjct: 78 DEAERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALE 119
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 34.7 bits (80), Expect = 0.12
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
L ++++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 116 RFLAQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 33.5 bits (77), Expect = 0.24
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
++ ++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 116 RFLAQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 33.1 bits (76), Expect = 0.36
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++++EEEE E E E+ E+ +++ +EE++ E EE N
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRHRAAN 167
Score = 32.8 bits (75), Expect = 0.51
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
++++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 32.8 bits (75), Expect = 0.51
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
++++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 32.8 bits (75), Expect = 0.51
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
++++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 32.8 bits (75), Expect = 0.51
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
++++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 32.8 bits (75), Expect = 0.51
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
++++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 32.8 bits (75), Expect = 0.51
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
++++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 32.8 bits (75), Expect = 0.51
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
++++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 32.8 bits (75), Expect = 0.51
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
++++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 32.8 bits (75), Expect = 0.51
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
++++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 29.7 bits (67), Expect = 4.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
++++EEEE E E E+ E+ +++ +EE++ E E H
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRH 163
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 35.2 bits (82), Expect = 0.12
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
F ++ EEE +E+ E +E EE+E++ E+ E
Sbjct: 507 FPRIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 34.8 bits (81), Expect = 0.14
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
+ EEE +E+ E +E EE+E++ E+ E ++ DF K+
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEITID-----DFDKV 551
Score = 33.6 bits (78), Expect = 0.35
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+++ L S+ + GL + + E + EEE +E+ E +E EE+E++
Sbjct: 478 LEEELTSWESLLEWGGLPAGTKVAKGEPLFPRIDVEEEIAYIKEQMEGSAPKEPEEKEKK 537
Query: 382 EEEEE 386
E+ E
Sbjct: 538 PEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 33.8 bits (78), Expect = 0.12
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 325 NPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
N + Y F D Y E+E EE E+ ++ ++ EE+EE + + + + + +
Sbjct: 46 NLDKFRKNYKFLD-DY---REKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNK 101
Query: 385 EEEEEEEEEEEEEEKELENEGH 406
+ E E +E +++EKEL EG
Sbjct: 102 DREREILKEHKKQEKELIKEGK 123
>gnl|CDD|217943 pfam04180, LTV, Low temperature viability protein. The
low-temperature viability protein LTV1 is involved in
ribosome biogenesis 40S subunit production.
Length = 426
Score = 35.0 bits (80), Expect = 0.13
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 322 PGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
P +P + + L + D Y EE EE++ EE EE ++EE ++ +E E+
Sbjct: 153 PDMDPRLREVLEALEDEAYVRNDEESEEDDGEEWEEMDDEEGSDDRSSAGFLDEFEDLSA 212
Query: 382 EEEEEEEEEEEEEEEEEKELENEGH 406
+E ++ EEE E N +
Sbjct: 213 PGSPQEAMKKHLFVEEETESRNTEY 237
Score = 30.0 bits (67), Expect = 4.0
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E E+E +EE EE++ EE EE ++EE ++ +E E+ E
Sbjct: 164 EALEDEAYVRNDEESEEDDGEEWEEMDDEEGSDDRSSAGFLDEFEDLSAPGSPQEAMKKH 223
Query: 408 DFVK 411
FV+
Sbjct: 224 LFVE 227
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins in
this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 33.6 bits (77), Expect = 0.13
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E+ E + E E+E ++ E++ E E+E E+E++E +++ E+ EE ++LE +
Sbjct: 52 LELLREDNERLSTQYEREKELRKQAEQKLLEFEDELEQEKKELQKKIEDLEENVRQLELK 111
Query: 405 GHCDFVKLREMLIR-TNMEDMREKTHCRHYELYRK 438
L + + R E +K + +E Y K
Sbjct: 112 AK----NLSDQVSRLEERETELKKEYNSLHERYTK 142
>gnl|CDD|152814 pfam12379, DUF3655, Protein of unknown function (DUF3655). This
domain family is found in viruses, and is approximately
70 amino acids in length. The family is found in
association with pfam08716, pfam01661, pfam05409,
pfam06471, pfam08717, pfam06478, pfam09401, pfam06460,
pfam08715, pfam08710.
Length = 70
Score = 31.9 bits (72), Expect = 0.13
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
C ++ EEE+ EE E EEEE EE E E E++ + E E + EEEEEE+
Sbjct: 3 CSFYPPDEEEDCEEYECEEEEIEETCEHEYGTEDDYKGLPLEFGASTEIVQVEEEEEED 61
Score = 31.6 bits (71), Expect = 0.18
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EEE+ EE E EEEE EE E E E++ + E E + EEEEEE L++
Sbjct: 9 DEEEDCEEYECEEEEIEETCEHEYGTEDDYKGLPLEFGASTEIVQVEEEEEEDWLDD 65
Score = 30.4 bits (68), Expect = 0.37
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+EEE+ EE E EEEE EE E E E++ + E E + EEEEEE+
Sbjct: 9 DEEEDCEEYECEEEEIEETCEHEYGTEDDYKGLPLEFGASTEIVQVEEEEEED 61
Score = 30.4 bits (68), Expect = 0.37
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+EEE+ EE E EEEE EE E E E++ + E E + EEEEEE+
Sbjct: 9 DEEEDCEEYECEEEEIEETCEHEYGTEDDYKGLPLEFGASTEIVQVEEEEEED 61
Score = 27.3 bits (60), Expect = 5.9
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLRE 414
+EEE+ EE E EEEE EE E E E++ + LE + V++ E
Sbjct: 9 DEEEDCEEYECEEEEIEETCEHEYGTEDDYKGLPLEFGASTEIVQVEE 56
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 33.5 bits (77), Expect = 0.13
Identities = 14/58 (24%), Positives = 36/58 (62%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E +++ ++E EE + E EE ++ ++ ++E++E ++ +E E+EE+K++ +
Sbjct: 89 AELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKKIWSVD 146
Score = 32.4 bits (74), Expect = 0.33
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
L E +++ ++E EE + E EE ++ ++ ++E++E ++ +E E+EE
Sbjct: 88 LAELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
Score = 30.8 bits (70), Expect = 1.0
Identities = 13/50 (26%), Positives = 31/50 (62%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E +++ ++E EE + E EE ++ ++ ++E++E ++ +E E+EE
Sbjct: 89 AELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
Score = 30.8 bits (70), Expect = 1.0
Identities = 13/50 (26%), Positives = 31/50 (62%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E +++ ++E EE + E EE ++ ++ ++E++E ++ +E E+EE
Sbjct: 89 AELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 35.0 bits (81), Expect = 0.14
Identities = 13/41 (31%), Positives = 31/41 (75%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+++EE + E+EE+E +E++ + +++EE++++E E+ EK
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 34.2 bits (79), Expect = 0.23
Identities = 13/42 (30%), Positives = 32/42 (76%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
L+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 547 LDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.37
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++EE + E+EE+E +E++ + +++EE++++E ++LE
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.1 bits (76), Expect = 0.46
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLI 417
+++EE + E+EE+E +E++ + +++EE+K+ E E KL + I
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELE------KLEKAKI 591
Score = 33.1 bits (76), Expect = 0.52
Identities = 11/42 (26%), Positives = 31/42 (73%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+++EE + E+EE+E +E++ + +++EE++++E E+ ++
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKA 589
>gnl|CDD|221198 pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term.
The broad host-range plasmid RK2 is able to replicate in
and be inherited in a stable manner in diverse
Gram-negative bacterial species. It encodes a number of
co-ordinately regulated operons including a central
control korF1 operon that represses the kfrA operon. The
KfrA polypeptide is a site-specific DNA-binding protein
whose operator overlaps the kfrA promoter. The
N-terminus, containing an helix-turn-helix motif, is
essential for function. Downstream from this family is
an extended coiled-coil domain containing a heptad
repeat segment which is probably responsible for
formation of multimers, and may provide an example of a
bridge to host structures required for plasmid
partitioning.
Length = 120
Score = 33.0 bits (76), Expect = 0.14
Identities = 13/35 (37%), Positives = 13/35 (37%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
L E E E E E E E E EEE E
Sbjct: 86 LAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.7 bits (75), Expect = 0.15
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+EE EE E E E E E E E E EEE E
Sbjct: 78 AQEEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 32.3 bits (74), Expect = 0.22
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 30.7 bits (70), Expect = 0.70
Identities = 16/40 (40%), Positives = 16/40 (40%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELE 119
Score = 30.7 bits (70), Expect = 0.74
Identities = 16/40 (40%), Positives = 17/40 (42%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE EE E E E E E E E E E+ELE
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELE 119
Score = 28.8 bits (65), Expect = 3.7
Identities = 14/41 (34%), Positives = 15/41 (36%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE EE E E E E E E E E EE+
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 28.4 bits (64), Expect = 4.3
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE EE E E E E E E E + LE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEE 117
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 35.0 bits (80), Expect = 0.14
Identities = 17/57 (29%), Positives = 40/57 (70%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ E+E +E+EE+ ++ +E+ EE + EE +E +E ++++ ++ +E +E E++N+
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNK 264
Score = 32.7 bits (74), Expect = 0.62
Identities = 17/60 (28%), Positives = 38/60 (63%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E+E +E+EE+ ++ +E+ EE + EE +E +E ++++ ++ +E +E E + + K L
Sbjct: 209 KTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPL 268
Score = 32.0 bits (72), Expect = 1.3
Identities = 16/54 (29%), Positives = 37/54 (68%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+E+ E+E +E+EE+ ++ +E+ EE + EE +E +E ++++ ++ +E +E E
Sbjct: 207 VEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYE 260
Score = 31.6 bits (71), Expect = 1.6
Identities = 16/53 (30%), Positives = 36/53 (67%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E+ E+E +E+EE+ ++ +E+ EE + EE +E +E ++++ ++ +E +E E
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYE 260
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 34.0 bits (78), Expect = 0.15
Identities = 17/61 (27%), Positives = 39/61 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ +EE E++ +EE +E ++E +E +EE++E++ E+ E+E + + + K+LE+
Sbjct: 1 MSKEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLED 60
Query: 404 E 404
+
Sbjct: 61 K 61
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 34.7 bits (80), Expect = 0.15
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 340 YFNGLEEEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
F + EEE E E E E E E++ E + + + E E
Sbjct: 8 PFPSDADALEEELLISEGGVSSALEVNLELELIEGEKKLELVVCDTKLGNADSAFEIPSE 67
Query: 398 EKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKK 439
E E + L ++ +D +EL R K
Sbjct: 68 VGEDLREN---AEEALGELSSSDEDDYYRMLLGLGHELSRIK 106
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 34.4 bits (79), Expect = 0.16
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+EE +E EEE E E EEE E E E + E E +EE+E E+
Sbjct: 138 QEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEARGRAKEERENED-- 195
Query: 406 HCDFVKLREMLIRTNMEDMREK 427
+ + ++ N E RE
Sbjct: 196 ----INREMLKLKANEE--RET 211
Score = 31.7 bits (72), Expect = 1.2
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE++ + EE + +EE +E EEE E E EEE E E E + E E
Sbjct: 124 LEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEA 183
Query: 404 EGHCDFVKLREMLIRTNMEDMREK 427
G + E + R E ++ K
Sbjct: 184 RGRAKEERENEDINR---EMLKLK 204
Score = 30.9 bits (70), Expect = 2.0
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E + ++E E++ + EE + +EE +E EEE E E EEE ELE E
Sbjct: 114 ELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERE 173
Score = 30.5 bits (69), Expect = 2.4
Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEK 399
LE + +E E ++ + + E E EE + +E+ ++E + ++E + ++E E++
Sbjct: 68 LEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQ 127
Query: 400 ELENE-----GHCDFVKLREMLIRTNMEDMREKTHCRHYEL-----YRKKRLEEESN 446
+NE ++ M T E + + E + ++E E+
Sbjct: 128 RRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEAR 184
Score = 30.5 bits (69), Expect = 2.5
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+Y + L + ++E E++ + EE + +EE +E EEE E E EEE E
Sbjct: 110 QYQDELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAE 169
Query: 399 KELENE 404
E EN
Sbjct: 170 LERENI 175
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 34.9 bits (81), Expect = 0.16
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++EEE E + +EE EEEEE + ++ ELE
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLELE 350
Score = 32.2 bits (74), Expect = 1.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++EEE E + +EE EEEEE + ++ E EL
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLELEL 351
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 374
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 375
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 30.7 bits (70), Expect = 3.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
++EEE E + +EE EEEE+ + + D ++L
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLEL 349
Score = 30.3 bits (69), Expect = 3.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEE 370
+EEE E + +EE EEEEE +
Sbjct: 313 SKQEEEAAAEAAKAQEEAAEEEEESIND 340
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 32.5 bits (74), Expect = 0.16
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
Y++ +E++ + E E ++EE E+E E EEEEE+ +
Sbjct: 60 SYYDRYDEDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEEKRK 110
Score = 32.5 bits (74), Expect = 0.17
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E++ + E E ++EE E+E E EEEEE+ +K+ +N
Sbjct: 66 DEDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEEKRKKKKKN 115
Score = 31.4 bits (71), Expect = 0.48
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E++ + E E ++EE E+E E EEEEE+ ++++K
Sbjct: 66 DEDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEEKRKKKKK 114
Score = 30.2 bits (68), Expect = 1.0
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E++ + E E ++EE E+E E EEEEE+ +++++ K
Sbjct: 66 DEDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEEKRKKKKKNK 116
Score = 30.2 bits (68), Expect = 1.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E++ + E E ++EE E+E E EEEEE+ +
Sbjct: 66 DEDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEEKRK 110
Score = 30.2 bits (68), Expect = 1.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+E++ + E E ++EE E+E E EEEEE+ +
Sbjct: 66 DEDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEEKRK 110
Score = 30.2 bits (68), Expect = 1.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+E++ + E E ++EE E+E E EEEEE+ +
Sbjct: 66 DEDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEEKRK 110
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 33.0 bits (76), Expect = 0.17
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEE 397
L+ + EE E EE ++ EEE E++EEE +E + E E + E++ EEE++
Sbjct: 16 LDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKL 75
Query: 398 EKELENE 404
KE E E
Sbjct: 76 RKEKEEE 82
Score = 31.8 bits (73), Expect = 0.40
Identities = 20/62 (32%), Positives = 39/62 (62%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
F EE ++ EEE E++EEE +E + ++ +E E + E++ EEE++ +E+E+E
Sbjct: 23 FERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRKEKEEE 82
Query: 401 LE 402
++
Sbjct: 83 IK 84
Score = 29.1 bits (66), Expect = 3.4
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 345 EEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ EEE E++EEE +E + +E E + E++ EEE++ +E+EEE +E + E +
Sbjct: 32 QREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRKEKEEEIKELKAELE 91
Query: 400 ELENE 404
EL+ E
Sbjct: 92 ELKAE 96
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 33.9 bits (78), Expect = 0.17
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E+E+E E E+ +++EE E ++++E +EL+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKA 109
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 32.8 bits (75), Expect = 0.17
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEE 388
KY L E E + E E EE + ++E E+E +E ++E+ EE + EEE
Sbjct: 49 KYIGSLLEAAERRKREREIAEERKLQKEREKEGDEFADKEKFVTSAYKKQLEENRKLEEE 108
Query: 389 EEEEEEEEEEKE 400
E+E EE EEE +
Sbjct: 109 EKEREELEEEND 120
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L;
Provisional.
Length = 337
Score = 34.4 bits (79), Expect = 0.18
Identities = 10/62 (16%), Positives = 29/62 (46%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+F G +E+ + +E++++ + + + + + + EE++ E+E + E
Sbjct: 274 WFLGEAIDEDSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDDRGEKESNGAKSNEL 333
Query: 400 EL 401
L
Sbjct: 334 HL 335
>gnl|CDD|135898 PRK06397, PRK06397, V-type ATP synthase subunit H; Validated.
Length = 111
Score = 32.6 bits (74), Expect = 0.18
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEE 398
++E+EE ++E + E+E E +E + + EE+ ++ EEE E +E E++
Sbjct: 15 IKEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKA 74
Query: 399 KELENE 404
E+ N+
Sbjct: 75 VEIINK 80
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 34.7 bits (79), Expect = 0.18
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE E++ +E+ EEEE+ E + EE E+ + E E ++L+ E
Sbjct: 241 EESGEDDFQEDPEEEEQLPESKPEETEKRVSAFQVEGSTLISAENLRQQLKQEK 294
Score = 32.0 bits (72), Expect = 1.0
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L EEEE E+E +++ + E+ +E E E + + + EEE EEE+K
Sbjct: 378 LSGEEEEPEDELKDDVDGEQADESEHETLALRKNARQRKAGLASPEEEALGEEEQKAPPK 437
Query: 404 EGHCDFVKLREMLIRTNMEDMREKT 428
+ + ++ TN ++ R+ T
Sbjct: 438 KKQLNQKNKQQTGSGTNSDEERDDT 462
Score = 32.0 bits (72), Expect = 1.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE E++ +E+ EEEE+ E + EE E+ + E E ++ ++EK
Sbjct: 241 EESGEDDFQEDPEEEEQLPESKPEETEKRVSAFQVEGSTLISAENLRQQLKQEK 294
Score = 30.8 bits (69), Expect = 2.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EE E++ +E+ EEEE+ E + EE E+ + E E ++ ++E
Sbjct: 241 EESGEDDFQEDPEEEEQLPESKPEETEKRVSAFQVEGSTLISAENLRQQLKQE 293
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 34.9 bits (81), Expect = 0.18
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++E+E E+ +EE E E E E E ++ E+ + + L
Sbjct: 550 LDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599
Score = 34.2 bits (79), Expect = 0.28
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
L ++E+ E + + EE EE EE+ E EE +E++EE E E EEE +E
Sbjct: 342 TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394
Score = 33.8 bits (78), Expect = 0.32
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E+ E + + EE EE EE+ E EE +E++EE E E EEE EL
Sbjct: 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDEL 395
Score = 33.8 bits (78), Expect = 0.35
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
F + ++E+E E+ +EE E E E E E ++ E+ + +
Sbjct: 542 FCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA 600
Score = 33.4 bits (77), Expect = 0.48
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
CK ++E+E E+ +EE E E E E E ++ E+ + +
Sbjct: 543 CKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR 597
Score = 32.2 bits (74), Expect = 0.97
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E+ E + + EE EE EE+ E EE +E++EE E E EEE +E + +L
Sbjct: 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL 399
Score = 32.2 bits (74), Expect = 1.1
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+E + + EE EE EE+ E EE +E++EE E E EEE +E
Sbjct: 346 QQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394
Score = 32.2 bits (74), Expect = 1.1
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+Y LEE EE EE+ E EE +E++EE E E EEE +E
Sbjct: 352 RYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394
Score = 32.2 bits (74), Expect = 1.1
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L + ++E+E E+ +EE E E E E E ++ E+ + + +
Sbjct: 546 LGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARA 602
Score = 31.9 bits (73), Expect = 1.4
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E+ E + + EE EE EE+ E EE +E++EE E E EEE +E
Sbjct: 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394
Score = 31.5 bits (72), Expect = 1.8
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
L E + + ++E+E E+ +EE E E E E E ++ E+
Sbjct: 539 LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
Score = 31.1 bits (71), Expect = 2.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++E+E E+ +EE E E E E E ++LE
Sbjct: 550 LDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
Score = 30.3 bits (69), Expect = 4.5
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ E + + EE EE EE+ E EE +E++EE E E E E
Sbjct: 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEE 391
Score = 30.3 bits (69), Expect = 4.6
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 345 EEEEEEEEEEEEEEEEE----------------EEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E E E E + E++ + E+ E + + EE EE EE+ E EE
Sbjct: 315 ELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEA 374
Query: 389 EEEEEEEEEEKELENE 404
+E++EE E E E
Sbjct: 375 DEQQEENEARAEAAEE 390
Score = 29.5 bits (67), Expect = 6.5
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ E + + EE EE EE+ E EE +E++EE E E EE+ E
Sbjct: 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394
>gnl|CDD|115071 pfam06390, NESP55, Neuroendocrine-specific golgi protein P55
(NESP55). This family consists of several mammalian
neuroendocrine-specific golgi protein P55 (NESP55)
sequences. NESP55 is a novel member of the chromogranin
family and is a soluble, acidic, heat-stable secretory
protein that is expressed exclusively in endocrine and
nervous tissues, although less widely than
chromogranins.
Length = 261
Score = 34.1 bits (77), Expect = 0.18
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E + E+E+ E E E E +E++ + E + E E E + E E E E E E E +
Sbjct: 82 EPSEPESDHEDEDFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETEPD 141
Score = 32.5 bits (73), Expect = 0.59
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
LE +E++ + E + E E E + E E E E E E E + E E E E+E
Sbjct: 105 LEYDEDDFDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDE 155
Score = 32.1 bits (72), Expect = 0.83
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E E E +E++ + E + E E E + E E E E E E E + E E E E+
Sbjct: 95 FEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPED 154
Query: 404 E 404
E
Sbjct: 155 E 155
Score = 32.1 bits (72), Expect = 0.85
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E +E++ + E + E E E + E E E E E E E + E E E E+E
Sbjct: 106 EYDEDDFDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDEP 156
Score = 31.8 bits (71), Expect = 0.93
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
E E E + E+E+ E E E E +E++ + E + E E E + E E E E E E D
Sbjct: 82 EPSEPESDHEDEDFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETEPD 141
Score = 30.6 bits (68), Expect = 2.2
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+E+ E E E E +E++ + E + E E E + E E E E E E E + E E
Sbjct: 91 EDEDFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETEPDTAPTTEPE 149
Score = 30.6 bits (68), Expect = 2.6
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E+ E E E E +E++ + E + E E E + E E E E E E E + E E E
Sbjct: 92 DEDFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETE 151
Score = 30.2 bits (67), Expect = 3.0
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E E E E +E++ + E + E E E + E E E E E E E + E E E E
Sbjct: 94 DFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPE 153
Score = 29.1 bits (64), Expect = 7.4
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+C ++ + + E + E E E + E E E E E E E + E E E E+E
Sbjct: 103 ECLEYDEDDFDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDE 155
>gnl|CDD|218358 pfam04979, IPP-2, Protein phosphatase inhibitor 2 (IPP-2). Protein
phosphotase inhibitor 2 (IPP-2) is a phosphoprotein
conserved among all eukaryotes, and it appears in both
the nucleus and cytoplasm of tissue culture cells.
Length = 123
Score = 32.8 bits (75), Expect = 0.18
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
Y +E+ + E E E E E+ E + EE E E+EE EE+EK
Sbjct: 34 YHRMDDEDSDSESEGNESLTPESLAEKLAAAESSDPSFSIEESESSSSEDEEFSPEEKEK 93
Query: 400 ELE---------NEGHCDFVKLREMLI 417
+ NE +KL LI
Sbjct: 94 RRQFEMKRKLHYNEFL--NIKLARQLI 118
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 34.4 bits (79), Expect = 0.18
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEE 369
N EE E E EE+EE+++E+++
Sbjct: 576 ANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 33.2 bits (76), Expect = 0.54
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEE 370
+D + N EE E E EE+EE+++E+++
Sbjct: 572 YDPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.9 bits (70), Expect = 2.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
E EE E E EE+EE+++E+++
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 374
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 375
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.4 bits (66), Expect = 7.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E EE E E EE+EE+++E++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 32.9 bits (75), Expect = 0.19
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
YF L + +E+E E+E E EE E++ + EE+ ++EE+EE+
Sbjct: 33 YFIKLGAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFAT 92
Score = 28.6 bits (64), Expect = 5.8
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEE-------------EEEEEEEEEEEEEEEE 387
G EE+ ++EE+EE+ + + E EE+ E++ +
Sbjct: 68 LRGGATAGHGEEDTDDEEDEEDFATPSAVPQWGKKARKRQRKVIRKLLEAEEQLREDQYD 127
Query: 388 EEEEEEEE 395
+E+E+ EE
Sbjct: 128 DEDEDIEE 135
Score = 27.9 bits (62), Expect = 9.0
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------------EEEEEEEEEEEEEE 388
N L EE+ ++EE+EE+ + + E EE+ E++
Sbjct: 66 NALRGGATAGHGEEDTDDEEDEEDFATPSAVPQWGKKARKRQRKVIRKLLEAEEQLREDQ 125
Query: 389 EEEEEEEEEE 398
++E+E+ EE
Sbjct: 126 YDDEDEDIEE 135
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 34.2 bits (79), Expect = 0.19
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK---EL 401
++ E + ++ E++ EE + ++ E E + +E ++ EE E +EK
Sbjct: 73 KDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRE 132
Query: 402 ENEGHCDFVKLREMLIRTNMEDMREKTHCR 431
E +FV L + I++ R
Sbjct: 133 LEEIPPEFVALYKQEIQSPTRLNLINELLR 162
Score = 32.7 bits (75), Expect = 0.60
Identities = 15/94 (15%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 314 NILAMQKVPGSNPTIDKNLYS--FFDCKYFNGLEEEEEE-EEEEEEEEEEEEEEEEEEEE 370
IL+ +++ L+S + ++ E + + E + ++ E + ++
Sbjct: 27 VILSNRRIKKG--GFLGLLFSKTAVEVTKLAAVDSELRKFQTREAAKVKDAEAQLLKDPA 84
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E++ EE + ++ E E + +E K+ E
Sbjct: 85 EKKREERKAAKKIERSTPSLIERKTQEVKDSGEE 118
>gnl|CDD|215009 smart01069, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37.
Length = 93
Score = 32.0 bits (73), Expect = 0.19
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
G+ E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 59 GVPNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 32.0 bits (73), Expect = 0.20
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
N +E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 62 NAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.70
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+E E +E +E+ E EEE E+E+EEEE+
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 29.7 bits (67), Expect = 1.3
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 374
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 28.9 bits (65), Expect = 2.4
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+E E +E +E+ E EEE E+E+EE+E
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEE 91
Score = 28.9 bits (65), Expect = 2.4
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+E E +E +E+ E EEE E+E+EEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEED 92
Score = 27.8 bits (62), Expect = 5.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E+E E +E +E+ E EEE EKE E E
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEED 92
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 34.5 bits (80), Expect = 0.19
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E ++E +++ E + E+ + + E +++E E E EE+++ELE
Sbjct: 141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEA-- 198
Query: 406 HCDFVKLRE 414
+L+E
Sbjct: 199 --QLEQLQE 205
Score = 33.0 bits (76), Expect = 0.61
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEKE 400
LE + E+ + + E +++E E E EE+++E E + E+ E+ E +E K+
Sbjct: 158 LELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQ 216
Score = 33.0 bits (76), Expect = 0.66
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ E + E+ + + E +++E E E EE+++E E + E+ +E+ E E
Sbjct: 156 QQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQE 213
Score = 32.6 bits (75), Expect = 0.83
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L ++E +++ E + E+ + + E +++E E E EE+++E E +LE
Sbjct: 143 LLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLE 201
Score = 32.2 bits (74), Expect = 0.99
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L++E +++ E + E+ + + E +++E E E EE+++E E + E+ E
Sbjct: 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEK 206
Query: 404 E 404
Sbjct: 207 A 207
Score = 31.5 bits (72), Expect = 1.8
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ +++ E + E+ + + E +++E E E EE+++E E + E+ +EK E
Sbjct: 151 VLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210
Query: 404 E 404
Sbjct: 211 S 211
Score = 31.1 bits (71), Expect = 2.3
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ + E +++E E E EE+++E E + E+ +E+ E +E +++ KE
Sbjct: 166 AQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKE 220
Score = 30.7 bits (70), Expect = 2.8
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+ + + E +++E E E EE+++E E + E+ +E+ E +E ++K
Sbjct: 163 REKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQK 217
Score = 30.7 bits (70), Expect = 2.9
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E+ + + E +++E E E EE+++E E + E+ +E+ E +E +++
Sbjct: 161 QAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKR 218
Score = 29.1 bits (66), Expect = 9.5
Identities = 13/66 (19%), Positives = 32/66 (48%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
+++ E + E+ + + E +++E E E EE+++E E + E+ +++
Sbjct: 155 KQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQER 214
Query: 409 FVKLRE 414
K +E
Sbjct: 215 KQKRKE 220
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional.
Length = 194
Score = 33.4 bits (76), Expect = 0.20
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRT 419
E + + +E E + + E + + +E EE KE E + D LRE R
Sbjct: 13 EALKAKAAKEAEAAQGKPEAAQPVAAADRIKELEEALAAKEAEAAANWDKY-LRE---RA 68
Query: 420 NMEDMREKTHCRHYEL 435
++E+ R++ EL
Sbjct: 69 DLENYRKRVQKEKEEL 84
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 34.2 bits (78), Expect = 0.20
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE+E ++E +E+ +EE EE +E++EEEE EEEEE + K
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEENDTVK 354
Score = 34.2 bits (78), Expect = 0.21
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 7/44 (15%)
Query: 344 LEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEE 380
L EE+E ++E +E+ +EE EE +E++EEEE EEEEE
Sbjct: 306 LGGEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
Score = 34.2 bits (78), Expect = 0.21
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE+E ++E +E+ +EE EE +E++EEEE EEEEE + +L
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEENDTVKL 355
Score = 33.4 bits (76), Expect = 0.40
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 7/43 (16%)
Query: 343 GLEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEE 378
G EE+E ++E +E+ +EE EE +E++EEEE EEEEE
Sbjct: 307 GGEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
Score = 31.5 bits (71), Expect = 1.3
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
EE+E ++E +E+ +EE EE +E++EEEE E+E EN D VKL
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEEN----DTVKL 355
Score = 31.1 bits (70), Expect = 1.6
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEE 368
+ FN +EE EE +E++EEEE EEEEE
Sbjct: 320 QLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
>gnl|CDD|223945 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit
[Energy production and conversion].
Length = 294
Score = 34.2 bits (79), Expect = 0.20
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
++ + + +Y G EEE+ ++ EE E EE + + E ++ ++
Sbjct: 224 VETGYWPLY--RYEPGKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLTKSNPELIQKLQK 281
Query: 388 EEEEEEEEEEE 398
+ +E EE +
Sbjct: 282 DVDERWEELKR 292
Score = 33.1 bits (76), Expect = 0.37
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 323 GSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----- 377
+ TI++ + Y+ L E + EEE+ ++ EE E EE
Sbjct: 212 NTMKTIEEAKL-AVETGYWP-LYRYEPGKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLT 269
Query: 378 EEEEEEEEEEEEEEEEEEEEEKELE 402
+ E ++ +++ +E EE K L
Sbjct: 270 KSNPELIQKLQKDVDERWEELKRLA 294
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 34.3 bits (79), Expect = 0.20
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 345 EEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++ +E E EE + EEE EE+ + E+ + E + EE E+ E E EE EK
Sbjct: 67 QQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEK 126
Query: 400 ELENE-----GHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESN 446
+L+NE G + +L + E EK R K++EEE++
Sbjct: 127 QLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQ-------RVKKIEEEAD 171
Score = 33.5 bits (77), Expect = 0.33
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEKEL 401
+E EE+ E E +E E ++ +E E EE + EEE ++EE+ + E+ L
Sbjct: 44 KEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNL 103
Query: 402 ENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEES 445
EN+ + + L +E + E ELYR L E
Sbjct: 104 ENQ----LEEREKALSARELE-LEELEKQLDNELYRVAGLTPEQ 142
Score = 32.8 bits (75), Expect = 0.59
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ +E E EE + EEE ++EE+ + E+ + E + EE E+ E ELE
Sbjct: 63 RERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELE 122
Query: 403 NEGH 406
Sbjct: 123 ELEK 126
Score = 32.0 bits (73), Expect = 1.2
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE+ + E+ + E + EE E+ E E EE E++ + E E+ ++L
Sbjct: 89 KEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKL 146
Score = 29.7 bits (67), Expect = 6.3
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEEEEEE 394
L+ E + EE E+ E E EE E++ + E E+ + E EEE+
Sbjct: 100 LDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEK 159
Query: 395 EEEEKELENEGH 406
+ K++E E
Sbjct: 160 AQRVKKIEEEAD 171
Score = 29.7 bits (67), Expect = 6.5
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EE 397
E+ + E + EE E+ E E EE E++ + E E+ +
Sbjct: 92 QLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLL 151
Query: 398 EKELENE 404
+ ELE E
Sbjct: 152 DAELEEE 158
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 31.8 bits (73), Expect = 0.20
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
GL + EE+ + + + E+ +EE + ++ EEE+EEE+ +++E+ + +E
Sbjct: 38 GLRGADLSEEDLADGDFDPEKWDEEMAKLFGDDYYEEEDEEEKPTWDDDEDIGDLVPDED 97
Query: 400 E 400
E
Sbjct: 98 E 98
Score = 31.1 bits (71), Expect = 0.44
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
L EE+ + + + E+ +EE + ++ EEE+EEE+ +++E+ + +E+EE
Sbjct: 43 DLSEEDLADGDFDPEKWDEEMAKLFGDDYYEEEDEEEKPTWDDDEDIGDLVPDEDEE 99
Score = 29.5 bits (67), Expect = 1.4
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ EE+ + + + E+ +EE + ++ EEE+EEE+ +++E+ + E+E
Sbjct: 40 RGADLSEEDLADGDFDPEKWDEEMAKLFGDDYYEEEDEEEKPTWDDDEDIGDLVPDEDEE 99
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 32.9 bits (76), Expect = 0.22
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 331 NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ ++F+ K +++ E + E E E + + ++E+ E +E E
Sbjct: 39 DQWAFYQAK---SIKQHLAELAADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEA 95
Query: 391 EEEEEEEEKELENEGHCDF 409
+ +E E E + H F
Sbjct: 96 KAKEAEAESDHALHQHHRF 114
>gnl|CDD|224559 COG1645, COG1645, Uncharacterized Zn-finger containing protein
[General function prediction only].
Length = 131
Score = 32.4 bits (74), Expect = 0.22
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E EEEEEE E E +E+ E ++ +E ++E +E+ E+ E K +E
Sbjct: 51 GYREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEKLLSVIETLKRIE 110
Score = 30.5 bits (69), Expect = 1.0
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLI 417
E EEEEEE E E +E+ E + E + D E L+
Sbjct: 51 GYREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEKLL 100
Score = 27.8 bits (62), Expect = 8.7
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+EEEEEE E E +E+ E ++ +E ++E +E+ E+ E + E
Sbjct: 54 EVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEKLLSVIETLKRIEA 111
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 33.8 bits (78), Expect = 0.22
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 20/80 (25%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEE-------- 384
LEEE ++ EE EE +E+ EE E+ E+ E E EE+ E EE
Sbjct: 6 LEEELDKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATALEK 65
Query: 385 -EEEEEEEEEEEEEEKELEN 403
EE E+ +E E K LEN
Sbjct: 66 LEEAEKAADESERGRKVLEN 85
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 33.9 bits (78), Expect = 0.23
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
++G+ E+ E ++ EE +E +E E EE ++ +E E+ +E ++
Sbjct: 146 YDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQS 201
Score = 33.9 bits (78), Expect = 0.23
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E+ E ++ EE +E +E E EE ++ +E E+ +E K+
Sbjct: 147 DGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQ 200
Score = 33.5 bits (77), Expect = 0.34
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E+ E ++ EE +E +E E EE ++ +E E+ +E ++
Sbjct: 145 IYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQS 201
Score = 33.1 bits (76), Expect = 0.44
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ E+ E ++ EE +E +E E EE ++ +E E+ +E ++
Sbjct: 147 DGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQ 200
Score = 32.7 bits (75), Expect = 0.49
Identities = 12/61 (19%), Positives = 27/61 (44%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E+ E ++ EE +E +E E EE ++ +E E+ +E ++ + +
Sbjct: 147 DGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQSVPAQQ 206
Query: 406 H 406
Sbjct: 207 A 207
Score = 32.0 bits (73), Expect = 0.83
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E+ E ++ EE +E +E E EE ++ +E E+ +E ++
Sbjct: 148 GIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQS 201
Score = 31.6 bits (72), Expect = 1.4
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
Y L + E E +E E++E ++E++ + E+ E ++ EE +E +E E EE
Sbjct: 115 YRETLGQFEAELRKEPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEV 174
Query: 400 ELENEG 405
+
Sbjct: 175 PDDYGA 180
Score = 31.6 bits (72), Expect = 1.4
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
F E ++ EE +E +E E EE ++ +E E+ +E ++
Sbjct: 149 IFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQS 201
Score = 30.8 bits (70), Expect = 2.2
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
G ++E ++E++ + E+ E ++ EE +E +E E EE ++ +E E
Sbjct: 133 GEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPE 188
Score = 30.4 bits (69), Expect = 2.6
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 346 EEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E++E ++E++ + E+ E ++ EE +E +E E EE ++ E E
Sbjct: 129 EPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPE 188
Query: 403 NE 404
Sbjct: 189 QS 190
Score = 29.3 bits (66), Expect = 5.9
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E++E ++E++ + E+ E ++ EE +E +E E EE ++ +E ++
Sbjct: 134 EDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQ 189
Score = 28.9 bits (65), Expect = 9.7
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E++E ++E++ + E+ E ++ EE +E +E E EE ++ E E
Sbjct: 129 EPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPE 188
>gnl|CDD|147203 pfam04914, DltD_C, DltD C-terminal region. DltD is and integral
membrane protein involved in the biosynthesis of
D-alanyl-lipoteichoic acid. This is important in
controlling the net ionic charge in lipoteichoic acid
(LTA). This family is found in bacteria of the
Bacillus/Clostridium group. DltD binds Dcp and ligates
it with D-alanine. DltD does not ligate acyl carrier
protein (ACP) with D-alanine. It also has thioesterase
activity for mischarged D-alanyl-acyl carrier protein
(ACP). DltD is thought to be responsible for
discriminating between Dcp involved in the D-alanylation
of LTA, and ACP involved in fatty acid biosynthesis.
This family consists of the C-terminal region of DltD.
Length = 130
Score = 32.6 bits (75), Expect = 0.23
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 170 YIDNQFEAYLQEELKIKRSLNTYHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVN-- 227
I N+F Y + ++K+ L ++ + Y P + L+ L L K + V
Sbjct: 3 GIKNKF--Y---KKRLKKKLKKLKGSQKNES-YTESPEYNDLQ-LVLDQFAKAGADVLFV 55
Query: 228 IIPIIAK-AD--TISKSELQKFKTNIMTELTSNGVHIYEFPTDDET----MSDV 274
I P+ K D +SK Q++ I +L S G +I + +DD M D
Sbjct: 56 IPPVNGKWYDYTGLSKEMRQQYYKKIKYQLKSQGFNIADL-SDDGYEPYFMQDT 108
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 33.6 bits (77), Expect = 0.23
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ EE EEEE E + EE E+++E+E + E E K +
Sbjct: 85 EKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMA 131
Score = 32.9 bits (75), Expect = 0.34
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+ EE EEEE E + EE E+++E+E + E E + K
Sbjct: 85 EKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAK 132
Score = 32.1 bits (73), Expect = 0.69
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 16/73 (21%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----------------E 387
LEE EEEE E + EE E+++E+E + E E + +
Sbjct: 87 LEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRK 146
Query: 388 EEEEEEEEEEEKE 400
E++ +E KE
Sbjct: 147 REQKARAAKERKE 159
Score = 31.7 bits (72), Expect = 0.81
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+ EE EEEE E + EE E+++E+E + E E + + + + +
Sbjct: 85 EKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIAD 139
Score = 31.7 bits (72), Expect = 0.96
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDM- 424
E+ EE EEEE E + EE E+++E+E + RE I NM M
Sbjct: 85 EKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQA----------REAEIAKNMAKMP 134
Query: 425 --REKTHCRHYELYRKKRLEEE 444
+ + +K R +E
Sbjct: 135 QMIADWRAQKRKREQKARAAKE 156
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 34.1 bits (78), Expect = 0.23
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE+ + +E + +E+ + E +EEE EEEEE + EE E E
Sbjct: 375 EEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 33.7 bits (77), Expect = 0.30
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE+ + +E + +E+ + E +EEE EEEEE + EE E E E+
Sbjct: 375 EEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFEV 427
Score = 33.3 bits (76), Expect = 0.46
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
L+E+ + E +EEE EEEEE + EE E E
Sbjct: 388 LKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 32.9 bits (75), Expect = 0.50
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE+ + +E + +E+ + E +EEE EEEEE + EE E E E L
Sbjct: 375 EEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFEVPAL 430
Score = 32.9 bits (75), Expect = 0.56
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
D K + L + +E+ + E +EEE EEEEE + EE E E
Sbjct: 377 DAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 32.9 bits (75), Expect = 0.58
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EE+ + +E + +E+ + E +EEE EEEEE + EE E E
Sbjct: 375 EEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 32.1 bits (73), Expect = 0.85
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE+ + +E + +E+ + E +EEE EEEEE + +E+E EG
Sbjct: 375 EEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEG 424
Score = 32.1 bits (73), Expect = 1.0
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE+ + +E + +E+ + E +EEE EEEEE + EE E + E
Sbjct: 375 EEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFE 426
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 34.0 bits (78), Expect = 0.25
Identities = 13/77 (16%), Positives = 22/77 (28%)
Query: 322 PGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
S ++ + E EE+ + + E + +
Sbjct: 42 EQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSK 101
Query: 382 EEEEEEEEEEEEEEEEE 398
E EEEEE EE +
Sbjct: 102 APSTESEEEEEPEETPD 118
Score = 33.6 bits (77), Expect = 0.34
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E EE+ + + E + + E EEEEE EE +
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPI 120
Score = 33.2 bits (76), Expect = 0.39
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E EE+ + + E + + E EEEEE EE +
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Score = 33.2 bits (76), Expect = 0.39
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E EE+ + + E + + E EEEEE EE +
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Score = 33.2 bits (76), Expect = 0.39
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E EE+ + + E + + E EEEEE EE +
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Score = 33.2 bits (76), Expect = 0.39
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E EE+ + + E + + E EEEEE EE +
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Score = 33.2 bits (76), Expect = 0.39
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E EE+ + + E + + E EEEEE EE +
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Score = 33.2 bits (76), Expect = 0.39
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E EE+ + + E + + E EEEEE EE +
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Score = 33.2 bits (76), Expect = 0.39
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E EE+ + + E + + E EEEEE EE +
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Score = 33.2 bits (76), Expect = 0.39
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E EE+ + + E + + E EEEEE EE +
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Score = 32.5 bits (74), Expect = 0.76
Identities = 12/66 (18%), Positives = 23/66 (34%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K + ++ + E EE+ + + E + + E EEEEE
Sbjct: 54 KEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEP 113
Query: 399 KELENE 404
+E +
Sbjct: 114 EETPDP 119
>gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional.
Length = 199
Score = 33.2 bits (75), Expect = 0.27
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ K + ++E +EE + E E EEE +EE + +E EE+ E++ E
Sbjct: 5 NKKDWKKFKDEHKEEHKVENEILEEETDEESQHQEPALGHPSYTALEEQLTLAEQKAHEN 64
Query: 397 EEKELENEGHCDFVKLR 413
EK + + V+ R
Sbjct: 65 WEKSVRALAELENVRRR 81
Score = 29.3 bits (65), Expect = 4.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNME 422
++E +EE + E E EEE +EE + + GH + L E L +
Sbjct: 13 KDEHKEEHKVENEILEEETDEESQHQEPALGHPSYTALEEQLTLAEQK 60
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 33.8 bits (77), Expect = 0.28
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EEE++ ++ ++ E E EE E + EE E EE +KE
Sbjct: 415 EEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKE 456
Score = 33.5 bits (76), Expect = 0.36
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ + EEE++ ++ ++ E E EE E + EE E EE ++E+
Sbjct: 405 FISTYSWADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQ 457
Score = 33.1 bits (75), Expect = 0.47
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EEE++ ++ ++ E E EE E + EE E EE ++E+ +L +
Sbjct: 415 EEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSKLASWVT 467
Score = 32.7 bits (74), Expect = 0.69
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
F + EEE++ ++ ++ E E EE E + EE E EE ++E+
Sbjct: 402 LLRFISTYSWADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQ 457
Score = 30.8 bits (69), Expect = 2.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
EEE++ ++ ++ E E EE E + EE E +E + E
Sbjct: 415 EEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSS 460
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 33.9 bits (77), Expect = 0.28
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+ E + ++E E + + E EE + E E E + + ++E + +L+N
Sbjct: 135 QPEKNESGNNDHATDKENLLESDASSSNDSESEESDSESEIESSDSDHDDENSDSKLDNL 194
Score = 33.1 bits (75), Expect = 0.54
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 323 GSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
GS +ID+N D N E+ E + ++E E + + E EE + E
Sbjct: 114 GSVSSIDENELVDLDTLLDNDQPEKNESGNNDHATDKENLLESDASSSNDSESEESDSES 173
Query: 383 EEEEEEEEEEEEEEEEKE 400
E E + + ++E + K
Sbjct: 174 EIESSDSDHDDENSDSKL 191
Score = 32.4 bits (73), Expect = 0.98
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+G + ++E E + + E EE + E E E + + ++E + + +
Sbjct: 141 SGNNDHATDKENLLESDASSSNDSESEESDSESEIESSDSDHDDENSDSKLDNL 194
Score = 30.1 bits (67), Expect = 4.5
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+ ++E E + + E EE + E E E + + ++E + + + +
Sbjct: 144 NDHATDKENLLESDASSSNDSESEESDSESEIESSDSDHDDENSDSKLDNLR 195
Score = 29.7 bits (66), Expect = 6.7
Identities = 9/57 (15%), Positives = 24/57 (42%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E EE + E E E + + ++E + + + +++E + E ++
Sbjct: 162 NDSESEESDSESEIESSDSDHDDENSDSKLDNLRNYIVSLKKDEADAESVLSSDDND 218
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 33.9 bits (78), Expect = 0.29
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E + EEE + E E +E EE E E+E E EE +EE+ +E EE
Sbjct: 62 DVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEEL 121
Query: 399 KELEN 403
EL N
Sbjct: 122 SELSN 126
Score = 32.0 bits (73), Expect = 1.3
Identities = 23/61 (37%), Positives = 29/61 (47%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
K F LEEE + E E +E EE E E+E E EE +EE+ +E EE
Sbjct: 63 VPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELS 122
Query: 395 E 395
E
Sbjct: 123 E 123
Score = 31.6 bits (72), Expect = 1.5
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+ EEE + E E +E EE E E+E E EE +EE+ +E EE E L+
Sbjct: 70 LDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDI 129
Query: 404 E 404
+
Sbjct: 130 D 130
Score = 31.6 bits (72), Expect = 1.6
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + + +E + EEE + E E +E EE E E+E E EE L+ E
Sbjct: 56 DTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEE 110
Score = 31.6 bits (72), Expect = 1.7
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
G + +E + EEE + E E +E EE E E+E E EE +EE+ E
Sbjct: 58 GGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDEN 117
Query: 402 ENE 404
E
Sbjct: 118 LEE 120
Score = 29.7 bits (67), Expect = 5.6
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
LE E +E EE E E+E E EE +EE+ +E EE E + + +
Sbjct: 76 ILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDFK 132
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 33.2 bits (76), Expect = 0.29
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
LE++ + EE + EEEEE EEEEE+ +EE++EE ++ +E
Sbjct: 89 LEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEM 137
Score = 33.2 bits (76), Expect = 0.29
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E++ + EE + EEEEE EEEEE+ +EE++EE ++ +E K
Sbjct: 90 EQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMK 138
Score = 32.8 bits (75), Expect = 0.41
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N L E++ + EE + EEEEE EEEEE+ +EE++EE ++ +E +
Sbjct: 81 LNELIYRSLEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIP 140
Query: 401 LENEG 405
E
Sbjct: 141 AAGES 145
Score = 31.6 bits (72), Expect = 0.94
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++ + EE + EEEEE EEEEE+ +EE++EE ++ +E + E L
Sbjct: 91 QKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIPAAGESRL 147
Score = 30.9 bits (70), Expect = 1.5
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRT 419
E++ + EE + EEEEE EEEEE+ +EE+KE + ++EM I
Sbjct: 90 EQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTP--PIKEMKIPA 141
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly related
to archaeal Holliday junction resolvase [Nucleotide
transport and metabolism].
Length = 175
Score = 32.8 bits (75), Expect = 0.29
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
Y L+ + E + E EE ++ E E E + +EEE + +E E++ EE E+
Sbjct: 22 AYIRSLQGKVESKARELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEAREDAVR 81
Query: 399 K 399
K
Sbjct: 82 K 82
Score = 29.7 bits (67), Expect = 3.1
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + E EE ++ E E E + +EEE + +E E++ EE +E
Sbjct: 32 ESKARELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEARE 77
Score = 29.0 bits (65), Expect = 5.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E + E EE ++ E E E + +EEE + +E E++ EE ++
Sbjct: 32 ESKARELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEARED 78
>gnl|CDD|130844 TIGR01784, T_den_put_tspse, conserved hypothetical protein
(putative transposase or invertase). Several lines of
evidence suggest that members of this family (loaded as
a fragment mode model to find part-length matches) are
associated with transposition, inversion, or
recombination. Members are found in small numbers of
genomes, but in large copy numbers in many of those
species, including over 30 full length and fragmentary
members in Treponema denticola. The strongest
similarities are usually within rather than between
species. PSI-BLAST shows similarity to proteins
designated as possible transposases, DNA invertases
(resolvases), and recombinases. In the oral pathogenic
spirochete Treponema denticola, full-length members are
often found near transporters or other membrane
proteins. This family includes members of the putative
transposase family pfam04754.
Length = 270
Score = 33.5 bits (77), Expect = 0.29
Identities = 17/71 (23%), Positives = 27/71 (38%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
K + + ++ EEE + +E E E+ E+ + EEE
Sbjct: 167 WLLLLKGKDNQSVNLIFLQIPFIQKAEEEIKTLLLSSKELELYEQREKYMTDAISAEEEG 226
Query: 392 EEEEEEEKELE 402
+EE EE LE
Sbjct: 227 KEEGIEEGILE 237
Score = 30.8 bits (70), Expect = 2.2
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++ EEE + +E E E+ E+ + EEE +EE EE E + E K+L
Sbjct: 189 IQKAEEEIKTLLLSSKELELYEQREKYMTDAISAEEEGKEEGIEEGILEAKLETAKKLLK 248
Query: 404 EG 405
G
Sbjct: 249 NG 250
Score = 28.9 bits (65), Expect = 8.8
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
F EEE + +E E E+ E+ + EEE +EE EE E + E
Sbjct: 186 IPFIQKAEEEIKTLLLSSKELELYEQREKYMTDAISAEEEGKEEGIEEGILEAKLE 241
>gnl|CDD|147845 pfam05914, RIB43A, RIB43A. This family consists of several
RIB43A-like eukaryotic proteins. Ciliary and flagellar
microtubules contain a specialised set of
protofilaments, termed ribbons, that are composed of
tubulin and several associated proteins. RIB43A was
first characterized in the unicellular biflagellate,
Chlamydomonas reinhardtii although highly related
sequences are present in several higher eukaryotes
including humans. The function of this protein is
unknown although the structure of RIB43A and its
association with the specialised protofilament ribbons
and with basal bodies is relevant to the proposed role
of ribbons in forming and stabilising doublet and
triplet microtubules and in organising their
three-dimensional structure. Human RIB43A homologues
could represent a structural requirement in centriole
replication in dividing cells.
Length = 379
Score = 33.9 bits (78), Expect = 0.29
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
G E++ +E+E EEE+ E+E + + + E +E +E ++ + ++L
Sbjct: 287 KGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQLDSANQQL 346
Query: 402 ENE 404
E
Sbjct: 347 AKE 349
Score = 32.7 bits (75), Expect = 0.54
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 343 GLEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
G+ E+ E++ +E+E EEE+ E+E + + + E +E +E
Sbjct: 276 GMSPEQLAAIRKGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKEL 335
Query: 398 EKEL 401
K+L
Sbjct: 336 RKQL 339
Score = 32.3 bits (74), Expect = 0.68
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ + +E++ +E+E EEE+ E+E + + + E +E KEL +
Sbjct: 279 PEQLAAIRKGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQ 338
Score = 29.2 bits (66), Expect = 6.4
Identities = 11/60 (18%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE+ E+E + + + E +E +E ++ + ++ +E++ +++ L E
Sbjct: 301 EEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQLDSANQQLAKEQKAQQEYLNKE 360
Score = 29.2 bits (66), Expect = 7.6
Identities = 11/64 (17%), Positives = 29/64 (45%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+E+E EEE+ E+E + + + E +E +E ++ + ++ E +
Sbjct: 294 QEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQLDSANQQLAKEQKAQ 353
Query: 407 CDFV 410
+++
Sbjct: 354 QEYL 357
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 33.8 bits (77), Expect = 0.29
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEE 368
N + E EE+EEEEEEEEEEEE
Sbjct: 217 NSSSSSGSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 349 EEEEEEEEEEEEEEEEEEEEE 369
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 350 EEEEEEEEEEEEEEEEEEEEE 370
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 351 EEEEEEEEEEEEEEEEEEEEE 371
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 352 EEEEEEEEEEEEEEEEEEEEE 372
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 353 EEEEEEEEEEEEEEEEEEEEE 373
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 354 EEEEEEEEEEEEEEEEEEEEE 374
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 355 EEEEEEEEEEEEEEEEEEEEE 375
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 356 EEEEEEEEEEEEEEEEEEEEE 376
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 357 EEEEEEEEEEEEEEEEEEEEE 377
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 358 EEEEEEEEEEEEEEEEEEEEE 378
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 359 EEEEEEEEEEEEEEEEEEEEE 379
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 360 EEEEEEEEEEEEEEEEEEEEE 380
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 361 EEEEEEEEEEEEEEEEEEEEE 381
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 362 EEEEEEEEEEEEEEEEEEEEE 382
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 363 EEEEEEEEEEEEEEEEEEEEE 383
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 364 EEEEEEEEEEEEEEEEEEEEE 384
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 365 EEEEEEEEEEEEEEEEEEEEE 385
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 366 EEEEEEEEEEEEEEEEEEEEE 386
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 367 EEEEEEEEEEEEEEEEEEEEE 387
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 368 EEEEEEEEEEEEEEEEEEEEE 388
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 369 EEEEEEEEEEEEEEEEEEEEE 389
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 370 EEEEEEEEEEEEEEEEEEEEE 390
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 371 EEEEEEEEEEEEEEEEEEEEE 391
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 372 EEEEEEEEEEEEEEEEEEEEE 392
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 373 EEEEEEEEEEEEEEEEEEEEE 393
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 374 EEEEEEEEEEEEEEEEEEEEE 394
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 375 EEEEEEEEEEEEEEEEEEEEE 395
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 376 EEEEEEEEEEEEEEEEEEEEE 396
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 377 EEEEEEEEEEEEEEEEEEEEE 397
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.0 bits (75), Expect = 0.41
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 378 EEEEEEEEEEEEEEEEEEEEE 398
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 31.4 bits (71), Expect = 1.5
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 380 EEEEEEEEEEEEEEEEEEEKELE 402
+ E EE+EEEEEEEEEE+E++
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEID 245
>gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO. This family
contains the bacterial type III secretion protein YscO,
which is approximately 150 residues long. YscO has been
shown to be required for high-level expression and
secretion of the anti-host proteins V antigen and Yops
in Yersinia pestis.
Length = 152
Score = 32.4 bits (74), Expect = 0.29
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 342 NGLEEE-EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
LE++ E ++ E E + + ++ +E + +E+ E +E+ E + + + EE E
Sbjct: 84 ASLEQQLAEAKQRLEAERQRLRQARQQLQEARKAQEKFAELARQEQAEAQAQRQYLEELE 143
Query: 401 LEN 403
E
Sbjct: 144 QEE 146
>gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional.
Length = 250
Score = 33.3 bits (76), Expect = 0.31
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEE 393
N ++ E+ ++E +E E ++++ E++ +E +E+ + E E+
Sbjct: 43 NRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATA 102
Query: 394 EEEEEKELENEGHCDFVKLRE 414
+E ++LE E F L++
Sbjct: 103 RDEWLEQLEREKQEFFKALQQ 123
>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 33.9 bits (78), Expect = 0.31
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVK 411
+ E + +E + E+++ + E E EEE ++++EE +E + E +F+
Sbjct: 455 ALKSAENPLQSLKEFKPSNEKKKIDTESTAEMLEEEAKKDDEEVQETQLKEATELQEFMI 514
Query: 412 LREMLIR 418
E LI
Sbjct: 515 NNEDLIE 521
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 32.1 bits (73), Expect = 0.32
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E+ E E++ EE+E++E EE +E+ E EE ++ E + E++ E+EK E
Sbjct: 32 SKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQE 87
Score = 32.1 bits (73), Expect = 0.34
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE +E+ E E++ EE+E++E EE +E+ E EE ++ E + E++ E E
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDE 83
Score = 31.7 bits (72), Expect = 0.43
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
+E+ E E++ EE+E++E EE +E+ E EE ++ E + E++ E+++L+ H
Sbjct: 32 SKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETWHE 91
Query: 408 DFVKL 412
+ L
Sbjct: 92 HNLAL 96
Score = 31.7 bits (72), Expect = 0.47
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E++ EE+E++E EE +E+ E EE ++ E + E++ E+E+ +E E L N
Sbjct: 41 EQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETWHEHNLALAN 98
Score = 31.7 bits (72), Expect = 0.50
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E E++ EE+E++E EE +E+ E EE ++ E + E++ E+E+ +E E L
Sbjct: 38 AEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETWHEHNL 94
Score = 31.3 bits (71), Expect = 0.52
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ + L +E+ E E++ EE+E++E EE +E+ E EE ++ E + E++ E+E
Sbjct: 24 SQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDE 83
Query: 398 EKELENEGH 406
+ + H
Sbjct: 84 KLQETWHEH 92
Score = 30.9 bits (70), Expect = 0.76
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL-REML 416
EE +E+ E E++ EE+E++E EE +E+ E EE + + E K+ E L
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKL 85
Query: 417 IRTNMEDMREKTH 429
T E +
Sbjct: 86 QETWHEHNLALAN 98
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 32.8 bits (75), Expect = 0.32
Identities = 12/61 (19%), Positives = 28/61 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+EE E EEE E + + E + +E E++ ++ + ++E + ++
Sbjct: 71 LKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGT 130
Query: 404 E 404
+
Sbjct: 131 Q 131
Score = 32.4 bits (74), Expect = 0.33
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L E E +EE E EEE E + + E + +E E++ ++ + ++E K
Sbjct: 66 LRERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERK 121
Score = 31.6 bits (72), Expect = 0.61
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E +EE E EEE E + + E + +E E++ ++ + ++E + K+
Sbjct: 70 ELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPR 127
Score = 31.3 bits (71), Expect = 0.88
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E +EE E EEE E + + E + +E E++ ++ + +KE
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKE 119
Score = 30.9 bits (70), Expect = 1.2
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E +EE E EEE E + + E + +E E++ ++ + +++
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKER 120
Score = 29.7 bits (67), Expect = 2.8
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E +EE E EEE E + + E + +E E++ ++ K
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCR 116
Score = 29.7 bits (67), Expect = 3.3
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVK 411
E E +EE E EEE E + + E + +E E++ + + D +
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKER 120
Score = 28.9 bits (65), Expect = 4.7
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E +EE E EEE E + + E + +E E++ ++ + ++ E
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKE 119
Score = 28.9 bits (65), Expect = 6.0
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E +EE E EEE E + + E + +E E++ ++ + +
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERK 121
Score = 28.6 bits (64), Expect = 7.5
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E E +EE E EEE E + + E + +E E++ ++ + + E
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERK 121
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 33.2 bits (76), Expect = 0.32
Identities = 13/50 (26%), Positives = 33/50 (66%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ E +EE ++ +E E ++ ++++++ EEE ++ ++++EEEE K+
Sbjct: 170 KPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 33.2 bits (76), Expect = 0.38
Identities = 16/65 (24%), Positives = 40/65 (61%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E +EE ++ +E E ++ ++++++ EEE ++ ++++EEEE +++ EE +K +
Sbjct: 169 AKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWM 228
Query: 402 ENEGH 406
+N
Sbjct: 229 KNVKQ 233
Score = 32.0 bits (73), Expect = 0.76
Identities = 14/64 (21%), Positives = 36/64 (56%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
Y N L ++ + +++ ++ EE++++E E+E EE E + +E+ EE ++ ++ ++
Sbjct: 89 YENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQ 148
Query: 400 ELEN 403
Sbjct: 149 RTPK 152
Score = 32.0 bits (73), Expect = 0.83
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
Y L+E + E + +E E ++ + +++ ++ EE++++E E+E EE E + K
Sbjct: 72 YSRSLKEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAK 131
Query: 400 ELENE 404
E E
Sbjct: 132 EKYEE 136
Score = 30.5 bits (69), Expect = 2.4
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E + E + +E E ++ + +++ ++ EE++++E E+E EE E + L E
Sbjct: 74 RSLKEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEK 133
Query: 406 H 406
+
Sbjct: 134 Y 134
Score = 29.7 bits (67), Expect = 4.6
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ EE++++E E+E EE E + +E+ EE ++ ++ ++ + ++E E
Sbjct: 105 QKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESA 161
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 33.7 bits (78), Expect = 0.32
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
LEEE+ +EE EE + + + + E+ EEE + EE +E
Sbjct: 177 LEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKRFPEEPQE 225
Score = 33.3 bits (77), Expect = 0.43
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EEE 397
L EEE+ +EE EE + + + + E+ EEE + EE +E E+
Sbjct: 175 LSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKRFPEEPQEDILYFLEKN 234
Query: 398 EKELEN 403
LE
Sbjct: 235 APLLEP 240
>gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region. This region is
found in plant seed storage proteins, N-terminal to the
Cupin domain (pfam00190). In Macadamia integrifolia,
this region is processed into peptides of approximately
50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C
motif. These peptides exhibit antimicrobial activity in
vitro.
Length = 147
Score = 32.4 bits (73), Expect = 0.32
Identities = 12/61 (19%), Positives = 33/61 (54%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E+E + E+++ E +E+ +EE++++ + EE+ + E+ ++ ++ E +
Sbjct: 21 EQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQR 80
Query: 407 C 407
C
Sbjct: 81 C 81
Score = 31.6 bits (71), Expect = 0.63
Identities = 11/57 (19%), Positives = 31/57 (54%)
Query: 337 DCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
C+ E + E+++ E +E+ +EE++++ + EE+ + E+ ++ ++ E
Sbjct: 15 QCQRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEP 71
Score = 31.2 bits (70), Expect = 0.81
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E+E + E+++ E +E+ +EE++++ + EE+ + E+ ++ ++ E
Sbjct: 21 EQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEP 71
Score = 31.2 bits (70), Expect = 0.81
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E+E + E+++ E +E+ +EE++++ + EE+ + E+ ++ ++ E
Sbjct: 21 EQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEP 71
Score = 30.1 bits (67), Expect = 1.8
Identities = 14/73 (19%), Positives = 39/73 (53%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E++ ++ E+ + E+E + E+++ E +E+ +EE++++ + EE+ + + +
Sbjct: 2 GRRNEDDPQQRYEQCQRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQ 61
Query: 403 NEGHCDFVKLREM 415
+ C + R
Sbjct: 62 CQQRCQQHEPRHR 74
Score = 30.1 bits (67), Expect = 1.9
Identities = 12/60 (20%), Positives = 33/60 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+++ E +E+ +EE++++ + EE+ + E+ ++ ++ E ++ E+ E E
Sbjct: 29 EQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKE 88
Score = 29.7 bits (66), Expect = 2.7
Identities = 11/62 (17%), Positives = 34/62 (54%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+EE++++ + EE+ + E+ ++ ++ E ++ E E+E+++++ + E +
Sbjct: 42 KEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQ 101
Query: 406 HC 407
C
Sbjct: 102 RC 103
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+++E+ +++ + E E+ +E E E +E EEE EE
Sbjct: 104 QQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEEG 147
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+++E+ +++ + E E+ +E E E +E EEE EE
Sbjct: 104 QQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEEG 147
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+++E+ +++ + E E+ +E E E +E EEE EE
Sbjct: 104 QQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEEG 147
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+++E+ +++ + E E+ +E E E +E EEE EE
Sbjct: 104 QQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEEG 147
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+++E+ +++ + E E+ +E E E +E EEE EE
Sbjct: 104 QQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEEG 147
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+++E+ +++ + E E+ +E E E +E EEE EE
Sbjct: 104 QQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEEG 147
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+++E+ +++ + E E+ +E E E +E EEE EE
Sbjct: 104 QQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEEG 147
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+++E+ +++ + E E+ +E E E +E EEE EE
Sbjct: 104 QQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEEG 147
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+++E+ +++ + E E+ +E E E +E EEE EE
Sbjct: 104 QQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEEG 147
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+++E+ +++ + E E+ +E E E +E EEE EE
Sbjct: 104 QQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEEG 147
Score = 28.9 bits (64), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+++E+ +++ + E E+ +E E E +E EEE EE
Sbjct: 104 QQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEEG 147
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 31.9 bits (73), Expect = 0.33
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------EEEEEEEEEEEEEEEEE 392
L+ E +E EE ++EEEEE+EE+E+E E +E+ + +E + E+E
Sbjct: 19 LQSEIDEYMEEYDKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKE 78
Query: 393 EEEEEEKELEN 403
++++++KEL+N
Sbjct: 79 KKKKKKKELKN 89
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 32.4 bits (74), Expect = 0.34
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
F G ++EE+ EE+ +E + E EE + + E E
Sbjct: 10 FFGYFPLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNV 62
Score = 32.4 bits (74), Expect = 0.38
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
K+F ++EE+ EE+ +E + E EE + + E E
Sbjct: 9 KFFGYFPLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNV 62
Score = 30.8 bits (70), Expect = 1.3
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++EE+ EE+ +E + E EE + + E E+
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGN 61
Score = 30.8 bits (70), Expect = 1.4
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++EE+ EE+ +E + E EE + + E E
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNV 62
Score = 30.4 bits (69), Expect = 1.8
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++EE+ EE+ +E + E EE + + E E + N
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNVVNM 65
Score = 30.4 bits (69), Expect = 1.8
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
++EE+ EE+ +E + E EE + + E +E G
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRG 60
Score = 30.1 bits (68), Expect = 2.0
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
++EE+ EE+ +E + E EE + + E E
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNV 62
Score = 30.1 bits (68), Expect = 2.0
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
++EE+ EE+ +E + E EE + + E E
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNV 62
Score = 30.1 bits (68), Expect = 2.0
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
++EE+ EE+ +E + E EE + + E E
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNV 62
Score = 30.1 bits (68), Expect = 2.0
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
++EE+ EE+ +E + E EE + + E E
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNV 62
Score = 30.1 bits (68), Expect = 2.0
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
++EE+ EE+ +E + E EE + + E E
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNV 62
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 31.6 bits (72), Expect = 0.35
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+ E+ E++ + E+E ++E+E E + + +E +EE+E E+ K
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAAK 84
Score = 31.2 bits (71), Expect = 0.45
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLRE 414
E+ E+ E++ + E+E ++E+E E + + +E +EEKE
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKE-------------- 76
Query: 415 MLIRTNMEDMREKTHCRHYELYRKKRLEEESNVIGS 450
E M K H + E R KR E+ + ++
Sbjct: 77 -----RYEKMAAKMHAKKVE--RLKRREKRNKLLKE 105
Score = 30.1 bits (68), Expect = 1.1
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ E++ + E+E ++E+E E + + +E +EE+E E+ + K++E
Sbjct: 34 MEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAAKMHAKKVE 91
Score = 29.3 bits (66), Expect = 1.9
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E+ E+ E++ + E+E ++E+E E + + +E +EE+E E+
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEK 80
Score = 27.4 bits (61), Expect = 9.5
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E+ E++ + E+E ++E+E E + + +E +EE+E E+
Sbjct: 34 MEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEK 80
>gnl|CDD|177400 PHA02571, a-gt.4, hypothetical protein; Provisional.
Length = 109
Score = 31.6 bits (72), Expect = 0.37
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E + EE +EE EE E + E E E++ K L
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAAKIL 39
Score = 30.9 bits (70), Expect = 0.63
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+E + EE +EE EE E + E E E +
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 29.3 bits (66), Expect = 2.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
L+E + EE +EE EE E + E E E++
Sbjct: 2 LDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 33.6 bits (78), Expect = 0.38
Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 26/102 (25%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----------------EEEEEEEEEEEEEE 387
E +EE EEE +E+ EE EE EEE +E+ + E EEE E
Sbjct: 114 EARKEEIEEEFQEKREEAFEELEEEAKEKGFALVRTPGGFVFAPLKDGEPLTEEEFEALP 173
Query: 388 EEEEEEEEEEEKELENEGHCDFVKLREML--IRTNMEDMREK 427
EEE EE EE+ ELE E L+E+L +R + REK
Sbjct: 174 EEEREELEEKIDELEEE-------LQEILRQLRELEREAREK 208
>gnl|CDD|169428 PRK08404, PRK08404, V-type ATP synthase subunit H; Validated.
Length = 103
Score = 31.3 bits (71), Expect = 0.39
Identities = 23/70 (32%), Positives = 44/70 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE E+ +EE ++ + +EE ++ EEE ++ EEE ++ E++++E EEE K++ E
Sbjct: 14 EAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEE 73
Query: 405 GHCDFVKLRE 414
G + +L+
Sbjct: 74 GEKEIEELKV 83
Score = 30.5 bits (69), Expect = 0.82
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ +EE ++ EEE ++ EEE ++ E++++E EEE ++ EE E+E EE + K EN
Sbjct: 31 RKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEEN 88
Score = 29.0 bits (65), Expect = 2.2
Identities = 22/61 (36%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEEEKEL 401
+E+ +EE ++ + +EE ++ EEE ++ EEE ++ E++++E EEE ++ EE EKE+
Sbjct: 19 IEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEI 78
Query: 402 E 402
E
Sbjct: 79 E 79
Score = 29.0 bits (65), Expect = 2.4
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+E EE E+ +EE ++ + +EE ++ EEE ++ EEE ++ E+K+ E E
Sbjct: 10 KAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGE 64
Score = 29.0 bits (65), Expect = 2.5
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE ++ EEE ++ EEE ++ E++++E EEE ++ EE E+E EE + + EE E
Sbjct: 35 EEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEENFE 90
Score = 28.6 bits (64), Expect = 3.1
Identities = 20/57 (35%), Positives = 38/57 (66%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ + +EE ++ EEE ++ EEE ++ E++++E EEE ++ EE E+E EE + + E
Sbjct: 30 IRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAE 86
Score = 28.6 bits (64), Expect = 3.4
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+E EE E+ +EE ++ + +EE ++ EEE ++ EEE ++ E+++KE E E
Sbjct: 10 KAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEE 66
Score = 28.2 bits (63), Expect = 4.1
Identities = 20/56 (35%), Positives = 38/56 (67%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ +EE ++ EEE ++ EEE ++ E++++E EEE ++ EE E+E EE +++ E
Sbjct: 31 RKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAE 86
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 33.7 bits (77), Expect = 0.39
Identities = 12/49 (24%), Positives = 15/49 (30%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+EE E + E+ EE E E EE EE
Sbjct: 708 VEETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
Score = 33.7 bits (77), Expect = 0.40
Identities = 12/48 (25%), Positives = 14/48 (29%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE E + E+ EE E E EE EE
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
Score = 33.3 bits (76), Expect = 0.41
Identities = 12/48 (25%), Positives = 14/48 (29%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EE E + E+ EE E E EE EE
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
Score = 33.3 bits (76), Expect = 0.41
Identities = 12/48 (25%), Positives = 14/48 (29%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EE E + E+ EE E E EE EE
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
Score = 33.3 bits (76), Expect = 0.41
Identities = 12/48 (25%), Positives = 14/48 (29%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
EE E + E+ EE E E EE EE
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
Score = 33.3 bits (76), Expect = 0.41
Identities = 12/48 (25%), Positives = 14/48 (29%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EE E + E+ EE E E EE EE
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
Score = 33.3 bits (76), Expect = 0.41
Identities = 12/48 (25%), Positives = 14/48 (29%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EE E + E+ EE E E EE EE
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
Score = 33.3 bits (76), Expect = 0.41
Identities = 12/48 (25%), Positives = 14/48 (29%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EE E + E+ EE E E EE EE
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
Score = 33.3 bits (76), Expect = 0.44
Identities = 12/51 (23%), Positives = 15/51 (29%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE E + E+ EE E E EE EE +
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSST 759
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 33.0 bits (76), Expect = 0.40
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+ L E +EEE EE+EE EE E +EE E
Sbjct: 212 IYWLLARAILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.6 bits (67), Expect = 4.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.6 bits (67), Expect = 4.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E +EEE EE+EE EE E +EE +
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 32.8 bits (75), Expect = 0.42
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +E EE E+ EE ++ + ++E++ ++ + E+E+EE L+
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDES 61
Score = 30.9 bits (70), Expect = 1.8
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
NG + E +E EE E+ EE ++ + ++E++ ++ + E+E+EE +E +
Sbjct: 12 NGYDPSEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
Score = 29.7 bits (67), Expect = 4.5
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E +E EE E+ EE ++ + ++E++ ++ + E+E+EE +E +
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESDM 63
Score = 29.3 bits (66), Expect = 5.6
Identities = 13/47 (27%), Positives = 30/47 (63%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E +E EE E+ EE ++ + ++E++ ++ + E+E+EE +E ++
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESDM 63
Score = 28.6 bits (64), Expect = 8.6
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E +E EE E+ EE ++ + ++E++ ++ + E+E+EE +E +
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
Score = 28.6 bits (64), Expect = 8.6
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E +E EE E+ EE ++ + ++E++ ++ + E+E+EE +E +
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
Score = 28.6 bits (64), Expect = 8.6
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E +E EE E+ EE ++ + ++E++ ++ + E+E+EE +E +
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
Score = 28.6 bits (64), Expect = 8.6
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E +E EE E+ EE ++ + ++E++ ++ + E+E+EE +E +
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
Score = 28.6 bits (64), Expect = 8.6
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E +E EE E+ EE ++ + ++E++ ++ + E+E+EE +E +
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
Score = 28.6 bits (64), Expect = 9.8
Identities = 12/49 (24%), Positives = 30/49 (61%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+D + + EE E+ EE ++ + ++E++ ++ + E+E+EE +E +
Sbjct: 14 YDPSEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
>gnl|CDD|237621 PRK14139, PRK14139, heat shock protein GrpE; Provisional.
Length = 185
Score = 32.3 bits (74), Expect = 0.42
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E ++ E+E EE + E+ E E E E + EL
Sbjct: 2 ENTQQNPSEQEAEEAGAAAQAAAAAAAAAEDAAPALEAELAEAEAKAAEL 51
Score = 32.3 bits (74), Expect = 0.43
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E ++ E+E EE + E+ E E E E K E
Sbjct: 2 ENTQQNPSEQEAEEAGAAAQAAAAAAAAAEDAAPALEAELAEAEAKAAEL 51
>gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110). This is
a family that is found predominantly at the C-terminus
of Kelch-containing proteins. However, the exact
function of this region is not known.
Length = 99
Score = 31.2 bits (71), Expect = 0.42
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE E EE E+EEEE+ EE KE + G
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGG 94
Score = 31.2 bits (71), Expect = 0.45
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE E EE E+EEEE+ EE +E++ E +
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGR 97
Score = 30.8 bits (70), Expect = 0.50
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE E EE E+EEEE+ EE +EK+
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGE 95
Score = 30.4 bits (69), Expect = 0.74
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGE 95
Score = 30.4 bits (69), Expect = 0.75
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
L EE E EE E+EEEE+ EE +E++ E
Sbjct: 54 LAEERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 29.6 bits (67), Expect = 1.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE E EE E+EEEE+ EE +E++ +
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 28.5 bits (64), Expect = 3.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
+Y+ EE E+EEEE+ EE +E++ E
Sbjct: 58 RYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein
YsxC/EngB. Members of this protein family are a GTPase
associated with ribosome biogenesis, typified by YsxC
from Bacillus subutilis. The family is widely but not
universally distributed among bacteria. Members commonly
are called EngB based on homology to EngA, one of
several other GTPases of ribosome biogenesis. Cutoffs as
set find essentially all bacterial members, but also
identify large numbers of eukaryotic (probably
organellar) sequences. This protein is found in about 80
percent of bacterial genomes [Protein synthesis, Other].
Length = 178
Score = 32.4 bits (75), Expect = 0.43
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 200 CLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKSELQKFKTNIMTEL 254
+ + H LK LDL ++ L + ++ ++ KAD + KSEL K I L
Sbjct: 103 GVVLLMDIRHPLKELDLEMIEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKAL 158
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 31.6 bits (72), Expect = 0.43
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E++ E ++ + EE ++EE E EE EE + EE KE
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 30.5 bits (69), Expect = 0.95
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E++ E ++ + EE ++EE E EE EE + EE +E
Sbjct: 86 WEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 30.5 bits (69), Expect = 1.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E E++ E ++ + EE ++EE E EE EE + EE +E
Sbjct: 82 IESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E E++ E ++ + EE ++EE E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E E++ E ++ + EE ++EE E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E E++ E ++ + EE ++EE E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E E++ E ++ + EE ++EE E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E E++ E ++ + EE ++EE E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E E++ E ++ + EE ++EE E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E E++ E ++ + EE ++EE E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E E++ E ++ + EE ++EE E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 29.3 bits (66), Expect = 2.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E++ E ++ + EE ++EE E EE EE + EE ++
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 28.5 bits (64), Expect = 4.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E++ E ++ + EE ++EE E EE EE + E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEM 125
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 30.5 bits (69), Expect = 0.44
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+++EE+ E E +E+ E+ + ++++ ++E K L
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKSL 69
Score = 29.4 bits (66), Expect = 1.3
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
L+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 32 LKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 28.2 bits (63), Expect = 3.7
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+++EE+ E E +E+ E+ + ++++ ++E + E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKSLAEGSSA 75
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+++EE+ E E +E+ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 33.0 bits (76), Expect = 0.45
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ E + EEEEE E E EE E +LE
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPELDLET 298
Score = 31.4 bits (72), Expect = 1.4
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E + EEEEE E E EE E + E +
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPELDLETISA 301
Score = 31.0 bits (71), Expect = 1.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
+ E + EEEEE E E EE E
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.7 bits (70), Expect = 2.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 374
+ + + E + EEEEE E E EE E
Sbjct: 260 YERAKAKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 375
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.3 bits (69), Expect = 3.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
>gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 31.8 bits (72), Expect = 0.45
Identities = 18/71 (25%), Positives = 42/71 (59%)
Query: 334 SFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
S+F+ + EEEEEE +E + E EE E E+ +++ + ++ + ++E+ + +
Sbjct: 39 SYFEETTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDPKGGDDLPDLGDDEDVDLD 98
Query: 394 EEEEEKELENE 404
+++++ LE+E
Sbjct: 99 DDDDDTFLEDE 109
Score = 28.7 bits (64), Expect = 4.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLRE 414
EE + EEEEEE +E + E EE E E+ + + +G D L +
Sbjct: 42 EETTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDPKGGDDLPDLGD 91
Score = 27.5 bits (61), Expect = 9.7
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
EE + EEEEEE +E + E EE E E+ +++ + +L + G + V L
Sbjct: 42 EETTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDPKGGDDLPDLGDDEDVDL 97
>gnl|CDD|235551 PRK05667, dnaG, DNA primase; Validated.
Length = 580
Score = 33.3 bits (77), Expect = 0.45
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
L EE EE+ E+E ++ E+ ++ EE EE +E E EE
Sbjct: 508 ALLESLAVWEEISEEDIAALEKELKDALEKLRDQLLEERLEELIAKERLLEGHGLSSEER 567
Query: 399 KELENE 404
EL
Sbjct: 568 LELLQL 573
Score = 31.4 bits (72), Expect = 1.6
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 344 LEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
LE EE EE+ E+E + EE EE +E E EE E
Sbjct: 510 LESLAVWEEISEEDIAALEKELKDALEKLRDQLLEERLEELIAKERLLEGHGLSSEERLE 569
Query: 394 EEEEEKELE 402
+ EL+
Sbjct: 570 LLQLLIELK 578
Score = 31.4 bits (72), Expect = 1.9
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEKELE 402
+ EE E EE EE+ E+E ++ E+ ++ EE EE +E+ LE
Sbjct: 499 RDAGLEELAALLESLAVWEEISEEDIAALEKELKDALEKLRDQLLEERLEELIAKERLLE 558
Query: 403 NEGHCDFVKLREMLIRTNME 422
G +L + + ++
Sbjct: 559 GHGLSSEERLELLQLLIELK 578
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 33.4 bits (76), Expect = 0.46
Identities = 11/57 (19%), Positives = 28/57 (49%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+E + E ++ ++ ++ E +EE+ ++++ ++ EE +E LE
Sbjct: 225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEE 281
Score = 33.0 bits (75), Expect = 0.54
Identities = 12/61 (19%), Positives = 29/61 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE+E + E ++ ++ ++ E +EE+ ++++ ++ EE +E E
Sbjct: 224 LEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQ 283
Query: 404 E 404
E
Sbjct: 284 E 284
Score = 31.5 bits (71), Expect = 1.9
Identities = 8/64 (12%), Positives = 23/64 (35%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L+ ++ E+ E E+ E+ + + E++ ++ ++ +E K
Sbjct: 587 PNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLT 646
Query: 402 ENEG 405
Sbjct: 647 ALHA 650
Score = 29.2 bits (65), Expect = 9.7
Identities = 7/60 (11%), Positives = 22/60 (36%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ E+ E E+ E+ + + E++ ++ ++ +E + L
Sbjct: 592 ITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHAL 651
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 33.2 bits (77), Expect = 0.46
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREML 416
EE E EEEE EEE + EEEE++ +E+ +++E +
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDGVFVVSGEKIER-----------LF 375
Query: 417 IRTNMEDM 424
TN
Sbjct: 376 KMTNFNRD 383
Score = 31.2 bits (72), Expect = 1.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
LEE E EEEE EEE + EEEE++ +E+
Sbjct: 326 LEETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 28.9 bits (66), Expect = 8.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
EE E EEEE EEE + EEEE++ +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 28.9 bits (66), Expect = 8.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
EE E EEEE EEE + EEEE++ +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 28.9 bits (66), Expect = 8.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
EE E EEEE EEE + EEEE++ +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 28.9 bits (66), Expect = 8.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
EE E EEEE EEE + EEEE++ +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 28.9 bits (66), Expect = 8.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
EE E EEEE EEE + EEEE++ +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 28.9 bits (66), Expect = 8.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
EE E EEEE EEE + EEEE++ +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 33.5 bits (77), Expect = 0.47
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+E E EE E EEE + E E E + ++E+E EE+ EE E+ +K E
Sbjct: 242 LKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDET 301
Query: 404 E 404
E
Sbjct: 302 E 302
Score = 33.2 bits (76), Expect = 0.53
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 328 IDKNLYSFFDC-----KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
IDK + FD K F ++ E + + EE+ ++++++E+++EEE + EE+
Sbjct: 707 IDKLFFFSFDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Query: 383 EEEEE 387
E E
Sbjct: 767 IEIAE 771
Score = 30.1 bits (68), Expect = 5.6
Identities = 10/39 (25%), Positives = 27/39 (69%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ E + + EE+ ++++++E+++EEE + EE+ +E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 29.7 bits (67), Expect = 6.1
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREML 416
+E E EE E EEE + E E E + ++E+E EE+ L +E D K+ E
Sbjct: 243 KETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETE 302
Query: 417 -IRTNMED 423
IR N ++
Sbjct: 303 EIRVNGKE 310
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 31.8 bits (72), Expect = 0.47
Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 340 YFNGLEEEEEEEEEEEEEEEE----------------EEEEEEEEEEEEEEEEEEEEEEE 383
Y LE+E E+E E++ +E++E ++ + E+ E+E + +
Sbjct: 38 YLKLLEKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQ 97
Query: 384 EEEEEEEEEEEEEEEKELENE 404
+E E+ E +++++E+E +
Sbjct: 98 KELEKIELSKKKQKERERRRK 118
Score = 28.3 bits (63), Expect = 7.1
Identities = 13/62 (20%), Positives = 37/62 (59%)
Query: 326 PTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+ +K + S + + F ++ +E++E ++ + E+ E+E + ++E E+ E +++++E
Sbjct: 53 ESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKE 112
Query: 386 EE 387
E
Sbjct: 113 RE 114
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 32.7 bits (75), Expect = 0.47
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 319 QKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEE 367
+ S ID +L + +YF EE EEEE E EEE +
Sbjct: 251 PEFLKSVEPIDAHLKTVNWLQYFEPPAEEIEEEEPEVLPEEELNTMKPS 299
Score = 29.6 bits (67), Expect = 5.6
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
KY N E + E + + + E EE EEEE E EEE +
Sbjct: 245 KYMNFPPEFLKSVEPIDAHLKTVNWLQYFEPPAEEIEEEEPEVLPEEELNTMKPS 299
>gnl|CDD|227494 COG5165, POB3, Nucleosome-binding factor SPN, POB3 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 508
Score = 33.1 bits (75), Expect = 0.48
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ E+ EE+E E+E+ + + + EE + + + E +EE
Sbjct: 456 SDSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEERPS 508
Score = 32.7 bits (74), Expect = 0.67
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
G + E+ EE+E E+E+ + + + EE + + + E +EE
Sbjct: 453 GSISDSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEERPS 508
Score = 32.7 bits (74), Expect = 0.75
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ E+ EE+E E+E+ + + + EE + + + E +EE
Sbjct: 457 DSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEERPS 508
Score = 31.1 bits (70), Expect = 2.0
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 310 FHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEE 369
HS I A + D L S D + N EE+E E+E+ + + + EE
Sbjct: 432 LHSKGIKARNEEVQERLQTD--LGSISDSEDINMGSAGEEDESEDEDFQMVSDSDVAEEY 489
Query: 370 EEEEEEEEEEEEEEEEEEE 388
+ + + E +EE
Sbjct: 490 DLQAALSDAEGGSDEERPS 508
Score = 31.1 bits (70), Expect = 2.2
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
L F K EE +E + + E+ EE+E E+E+ + + + E
Sbjct: 428 LEQFLHSKGIKARNEEVQERLQTDLGSISDSEDINMGSAGEEDESEDEDFQMVSDSDVAE 487
Query: 387 EEEEEEEEEEEEKELENEG 405
E + + + E + E
Sbjct: 488 EYDLQAALSDAEGGSDEER 506
Score = 30.0 bits (67), Expect = 4.5
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE +E + + + E+ EE+E E+E+ + + + EE + + + EG
Sbjct: 442 EEVQERLQTDLGSISDSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGG 501
Query: 407 CD 408
D
Sbjct: 502 SD 503
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 33.2 bits (76), Expect = 0.51
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
F + L E +E ++ +E + + E E + + E ++E E +
Sbjct: 868 FMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
Score = 32.4 bits (74), Expect = 0.85
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E +E ++ +E + + E E + + E ++E E + L+
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALD 929
Score = 32.4 bits (74), Expect = 0.90
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
L E +E ++ +E + + E E + + E ++E E +
Sbjct: 873 LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
Score = 31.7 bits (72), Expect = 1.5
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E +E ++ +E + + E E + + E ++E E +
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 32.1 bits (74), Expect = 0.54
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ ++EE + ++E E++EE EE+E+E +++ EE+EEE EE EE+++ELE
Sbjct: 83 QEKRLLQKEETLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELE 141
Score = 29.8 bits (68), Expect = 3.0
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L ++EE + ++E E++EE EE+E+E +++ EE+EEE EE EE+++E E+
Sbjct: 87 LLQKEETLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELER 142
Score = 28.3 bits (64), Expect = 9.3
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 21/83 (25%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------------EEEEEEEEE 386
LEE+E+E +++ EE+EEE EE EE+++E E EE E E +
Sbjct: 106 ESLEEKEKELAARQQQLEEKEEELEELIEEQQQELERISGLTAEEAKEILLEEVEAELKH 165
Query: 387 E------EEEEEEEEEEEKELEN 403
E E EEE +EE +K+ +
Sbjct: 166 EAAKMIKEIEEEAKEEADKKAKE 188
>gnl|CDD|235449 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 32.9 bits (76), Expect = 0.54
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+EE EEEEE E ++ +E+E +EEEEEE E E +E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVE 56
Score = 32.5 bits (75), Expect = 0.57
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+EE EEEEE E ++ +E+E +EEEEEE E E E L
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEAAL 59
Score = 32.2 bits (74), Expect = 0.83
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+EE EEEEE E ++ +E+E +EEEEEE E E E +
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEAALR 60
Score = 32.2 bits (74), Expect = 0.94
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+EE EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 32.2 bits (74), Expect = 0.94
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+EE EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 32.2 bits (74), Expect = 0.94
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+EE EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 32.2 bits (74), Expect = 0.94
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+EE EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 32.2 bits (74), Expect = 0.94
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+EE EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 32.2 bits (74), Expect = 0.94
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+EE EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 31.0 bits (71), Expect = 2.1
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EE EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVE 56
Score = 29.8 bits (68), Expect = 4.7
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
F+ EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 9 IDFDEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 33.1 bits (76), Expect = 0.56
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 23/109 (21%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEE------ 390
L+E E E++EEE E+ ++ E+ E+ EE E + EEEEE++ E E
Sbjct: 93 LKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQMEILEKALKSY 152
Query: 391 EEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKK 439
+ +EE K L+ +L + L + + R + + E YR K
Sbjct: 153 LKIVKEENKSLQ--------RLAKALQKE--SEERTQDETKMIEEYRDK 191
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 32.9 bits (75), Expect = 0.56
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 343 GLEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
G ++EEEEE E+ EEE E E E E+E + +E E + + +EEE
Sbjct: 467 GSGHDDEEEEEPLLSEDRVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQEEEAAAA 526
Query: 399 KELENE 404
KE+ E
Sbjct: 527 KEITEE 532
Score = 31.4 bits (71), Expect = 1.7
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 343 GLEEEEEEE----EEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEE 393
G ++EEEEE E+ EEE E E E+E + +E E + + +EEE +E
Sbjct: 469 GHDDEEEEEPLLSEDRVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQEEEAAAAKE 528
Query: 394 EEEEEKELENEG 405
EEE L
Sbjct: 529 ITEEENVLAKAV 540
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 32.7 bits (74), Expect = 0.56
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+ +EE +E+ ++++ + E E E E E E++ L++
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASRGRGEGSSRPPEKDSGLLDS 102
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 32.8 bits (75), Expect = 0.59
Identities = 14/70 (20%), Positives = 37/70 (52%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+YS L EEE + +++++E++ E +++ E+++++++E++E +
Sbjct: 25 SYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPK 84
Query: 390 EEEEEEEEEK 399
E E + K
Sbjct: 85 SEGETKLGFK 94
Score = 30.1 bits (68), Expect = 3.8
Identities = 13/62 (20%), Positives = 36/62 (58%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L +E EEE + +++++E++ E +++ E+++++++E++E + E E +
Sbjct: 31 VLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETK 90
Query: 401 LE 402
L
Sbjct: 91 LG 92
Score = 29.7 bits (67), Expect = 4.9
Identities = 11/54 (20%), Positives = 33/54 (61%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EEE + +++++E++ E +++ E+++++++E++E + E E +
Sbjct: 37 EILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETK 90
Score = 29.7 bits (67), Expect = 5.8
Identities = 11/59 (18%), Positives = 33/59 (55%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E EEE + +++++E++ E +++ E+++++++E++E + E E +
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGF 93
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 31.6 bits (72), Expect = 0.60
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+++ E + +EE E ++E EE+++ ++ +E+ E++EL+N
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKN 78
Score = 31.6 bits (72), Expect = 0.68
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+++ E + +EE E ++E EE+++ ++ +E+ E+EE + + E
Sbjct: 26 VKPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENA 85
Query: 401 LENE 404
EN
Sbjct: 86 TENN 89
Score = 30.8 bits (70), Expect = 1.0
Identities = 12/58 (20%), Positives = 29/58 (50%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E+++ E + +EE E ++E EE+++ ++ +E+ E+EE + +
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATE 87
Score = 29.7 bits (67), Expect = 2.7
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
L+ + E+++ E + +EE E ++E EE+++ ++ +E+ E+EE +
Sbjct: 23 KLQVKPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Score = 29.3 bits (66), Expect = 3.2
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N E+++ E + +EE E ++E EE+++ ++ +E+ E+EE + + E E
Sbjct: 29 NRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATEN 88
Query: 402 EN 403
Sbjct: 89 NT 90
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 32.5 bits (73), Expect = 0.61
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE E E EE + E E+ E + EE E+ + EE + EE++ EEK E G
Sbjct: 198 EEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEEAG 256
Score = 31.7 bits (71), Expect = 0.96
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
G E E EE + E E+ E + EE E+ + EE + EE++ EE+ EE
Sbjct: 204 GAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
Score = 31.3 bits (70), Expect = 1.4
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E E EE + E E+ E + EE E+ + EE + EE++ EE+ EE
Sbjct: 206 EGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
Score = 30.6 bits (68), Expect = 2.4
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE E E EE + E E+ E + EE E+ + EE + EE++ EE+ E
Sbjct: 198 EEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAE 253
Score = 30.6 bits (68), Expect = 2.6
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE E E EE + E E+ E + EE E+ + EE + EE++ EE+ E
Sbjct: 198 EEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
Score = 29.0 bits (64), Expect = 7.8
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE + E E+ E + EE E+ + EE + EE++ EE+ EE +E E E
Sbjct: 211 EEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEEAGASSAAQEAPAAEQE 270
Score = 28.6 bits (63), Expect = 9.3
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+G E EE E E EE + E E+ E + EE E+ + EE + EE+K
Sbjct: 189 SGEEAAAPGEEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAE 248
Query: 402 E 402
E
Sbjct: 249 E 249
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 32.6 bits (74), Expect = 0.63
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
+E+E E+ + E +E+ E EEE + E E LENE CD
Sbjct: 462 KEKELLTEKGGAQFSSANSLERGADEDYLIVNGTNEPYEEEVIKTNENENFPLENESPCD 521
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 32.7 bits (74), Expect = 0.64
Identities = 10/51 (19%), Positives = 29/51 (56%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E +E E ++ E+ ++ + + + EE++++ EEE+ + ++ K +
Sbjct: 90 QEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSK 140
Score = 32.0 bits (72), Expect = 1.4
Identities = 10/52 (19%), Positives = 30/52 (57%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E +E E ++ E+ ++ + + + EE++++ EEE+ + ++ + +K
Sbjct: 90 QEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKK 141
Score = 30.8 bits (69), Expect = 2.5
Identities = 10/52 (19%), Positives = 30/52 (57%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E +E E ++ E+ ++ + + + EE++++ EEE+ + ++ + K+
Sbjct: 90 QEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKK 141
Score = 30.4 bits (68), Expect = 4.0
Identities = 9/50 (18%), Positives = 28/50 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+E +E E ++ E+ ++ + + + EE++++ EEE+ + ++ +
Sbjct: 89 FQEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKG 138
Score = 30.0 bits (67), Expect = 4.6
Identities = 9/49 (18%), Positives = 28/49 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+E +E E ++ E+ ++ + + + EE++++ EEE+ + ++ +
Sbjct: 90 QEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKG 138
Score = 30.0 bits (67), Expect = 4.6
Identities = 9/49 (18%), Positives = 28/49 (57%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+E +E E ++ E+ ++ + + + EE++++ EEE+ + ++ +
Sbjct: 90 QEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKG 138
Score = 29.6 bits (66), Expect = 6.7
Identities = 10/46 (21%), Positives = 27/46 (58%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+E +E E ++ E+ ++ + + + EE++++ EEE+ K ++
Sbjct: 90 QEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKD 135
Score = 29.3 bits (65), Expect = 7.4
Identities = 9/47 (19%), Positives = 27/47 (57%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E +E E ++ E+ ++ + + + EE++++ EEE+ + ++
Sbjct: 90 QEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDG 136
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 31.9 bits (73), Expect = 0.64
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E ++ + EE EE E +EEE E E++E K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESK 193
Score = 31.9 bits (73), Expect = 0.76
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E ++ + EE EE E +EEE E E++E ++K+
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 30.4 bits (69), Expect = 1.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E ++ + EE EE E +EEE E E++E +++K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
>gnl|CDD|233914 TIGR02538, type_IV_pilB, type IV-A pilus assembly ATPase PilB.
This model describes a protein of type IV pilus
biogenesis designated PilB in Pseudomonas aeruginosa but
PilF in Neisseria gonorrhoeae; the more common usage,
reflected here, is PilB. This protein is an ATPase
involved in protein export for pilin assembly and is
closely related to GspE (TIGR02533) of type II
secretion, also called the main terminal branch of the
general secretion pathway. Note that type IV pilus
systems are often divided into type IV-A and IV-B, with
the latter group including bundle-forming pilus,
mannose-sensitive hemagglutinin, etc. Members of this
family are found in type IV-A systems [Cell envelope,
Surface structures, Protein fate, Protein and peptide
secretion and trafficking].
Length = 564
Score = 32.7 bits (75), Expect = 0.67
Identities = 9/45 (20%), Positives = 26/45 (57%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
KY+ G + +E +E+ + EE + + ++E ++ E++ +++
Sbjct: 134 KYYGGSDSLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDD 178
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 32.8 bits (75), Expect = 0.67
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 344 LEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L+E E +E E ++++ E E + ++ + E+ EE ++EEE ++
Sbjct: 835 LKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQF 894
Query: 401 LENEGH 406
E EG
Sbjct: 895 AEEEGL 900
Score = 30.5 bits (69), Expect = 3.3
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++++ E E + ++ + E+ EE ++EEE ++ EEE EEE ++
Sbjct: 852 QKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEEGLNEEELAFYDDL 911
Query: 405 GHCDFVKLR--EMLIRTNM--EDMREK 427
L+ + +REK
Sbjct: 912 ALNGGKLPENGTELVEKLAKEKSLREK 938
Score = 29.7 bits (67), Expect = 7.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ L E E + ++ + E+ EE ++EEE ++ EEE EEE
Sbjct: 851 RQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEEGLNEEE 904
Score = 29.3 bits (66), Expect = 8.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
Y N +E E EE +EE EE +E EE E+ E+ +++
Sbjct: 445 LPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKK 487
Score = 29.3 bits (66), Expect = 9.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EE +EE EE +E EE E+ E+ +++ + E
Sbjct: 456 ELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 32.9 bits (75), Expect = 0.67
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
L ++E+ E + + EE EE+ E EE E +EE E E E E +E
Sbjct: 342 TALRQQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDE 394
Score = 30.6 bits (69), Expect = 3.5
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E+ E + + EE EE+ E EE E +EE E E E E EL+++
Sbjct: 346 QQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQ 398
Score = 30.2 bits (68), Expect = 4.4
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++E+ E + + EE EE+ E EE E +EE E E E E +E + +L
Sbjct: 346 QQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQL 399
Score = 29.5 bits (66), Expect = 7.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
++E+ E + + EE EE+ E EE E +EE E E E E +E
Sbjct: 346 QQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDE 394
>gnl|CDD|234029 TIGR02830, spore_III_AG, stage III sporulation protein AG. CC A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is found in a spore
formation operon and is designated stage III sporulation
protein AG [Cellular processes, Sporulation and
germination].
Length = 186
Score = 31.9 bits (73), Expect = 0.68
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+F+ E+ EE + E+ E E + E ++E+E + E++ E E +E
Sbjct: 22 FFSSSEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
Score = 31.6 bits (72), Expect = 0.72
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREML 416
E+ EE + E+ E E + E ++E+E + EK+ ENE L+E+L
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENE-------LKEIL 70
Score = 31.2 bits (71), Expect = 1.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ EE + E+ E E + E ++E+E + E++ E EL+
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELK 67
Score = 29.6 bits (67), Expect = 3.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ EE + E+ E E + E ++E+E + E++ E E ++ LE
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKEILE 71
Score = 29.2 bits (66), Expect = 4.3
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+ EE + E+ E E + E ++E+E + E++ E E +E EK
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKEILEK 72
Score = 28.9 bits (65), Expect = 6.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E+ EE + E+ E E + E ++E+E + E++ E E +E
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
Score = 28.9 bits (65), Expect = 6.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E+ EE + E+ E E + E ++E+E + E++ E E +E
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
Score = 28.9 bits (65), Expect = 6.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E+ EE + E+ E E + E ++E+E + E++ E E +E
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
Score = 28.9 bits (65), Expect = 6.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E+ EE + E+ E E + E ++E+E + E++ E E +E
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
Score = 28.9 bits (65), Expect = 6.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E+ EE + E+ E E + E ++E+E + E++ E E +E
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
Score = 28.9 bits (65), Expect = 6.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E+ EE + E+ E E + E ++E+E + E++ E E +E
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
Score = 28.9 bits (65), Expect = 6.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E+ EE + E+ E E + E ++E+E + E++ E E +E
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 32.8 bits (75), Expect = 0.68
Identities = 15/61 (24%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 334 SFFDC-KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
FF+ K GL+++E + + ++ ++ +E+++E+++E+E+ + EE EE ++ +
Sbjct: 461 EFFEFLKNMLGLKDDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDA 520
Query: 393 E 393
E
Sbjct: 521 E 521
Score = 32.4 bits (74), Expect = 0.80
Identities = 12/72 (16%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEEEEEEEE 393
+ ++ +E+++E+++E+E+ + EE EE ++ + E +
Sbjct: 479 NDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNADISNSGS 538
Query: 394 EEEEEKELENEG 405
E+ + + EG
Sbjct: 539 SGAEDDDDDIEG 550
Score = 32.4 bits (74), Expect = 0.84
Identities = 10/65 (15%), Positives = 31/65 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ +E+++E+++E+E+ + EE EE ++ + E ++ + + E +++
Sbjct: 487 DADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNADISNSGSSGAEDDDD 546
Query: 405 GHCDF 409
Sbjct: 547 DIEGV 551
Score = 32.0 bits (73), Expect = 1.1
Identities = 12/63 (19%), Positives = 38/63 (60%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCD 408
+++E + + ++ ++ +E+++E+++E+E+ + EE EE ++ + E K+ ++ + D
Sbjct: 473 KDDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNAD 532
Query: 409 FVK 411
Sbjct: 533 ISN 535
Score = 31.2 bits (71), Expect = 2.0
Identities = 14/75 (18%), Positives = 34/75 (45%)
Query: 326 PTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
ID +L D + E+++E+E+ + EE EE ++ + E ++ + +
Sbjct: 475 DEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNADIS 534
Query: 386 EEEEEEEEEEEEEKE 400
E+++++ E
Sbjct: 535 NSGSSGAEDDDDDIE 549
Score = 30.5 bits (69), Expect = 3.0
Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 27/91 (29%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEE---------------------------EE 373
F G E ++E+E+++E ++ E+++ +E+E +E
Sbjct: 431 FEGAEFADDEDEDDDEPDDSEDKDVSFDEDEFFEFLKNMLGLKDDEIDNDLPDDSDDADE 490
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+++E+++E+E+ + EE EE +++ E
Sbjct: 491 DDDEDDDEDEDSSSDSTLEELEEYMDQMDAE 521
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 32.7 bits (74), Expect = 0.70
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEEE E +EE EE EE+++E E+ E +EE+ + +EE K +E++
Sbjct: 242 EEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKFIEHD 287
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; MTH326-like has inactivated
polymerase catalytic domain; alr1562 and slr7011 -
predicted only on the basis of size, presence of HD
domain, and location with RAMPs in one operon; signature
gene for type III; also known as Crm2 family.
Length = 475
Score = 32.4 bits (74), Expect = 0.72
Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 335 FFDCKYFNGLEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ + L+EE EEE E +E + E E + + E + E+ E+ E
Sbjct: 87 PGNEEEAEELKEEIEEETWESILNKVKEYLDIENVEPFLLKSDALERISDRIEDGNEDRE 146
Query: 390 EEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNV-- 447
E EE E K + + ++ + + EK E Y++ L++ + +
Sbjct: 147 EAEELEAARKNVRDFAPVPWIPPAPKIYIYIVSIFNEKE---LSEKYKEFLLKKRNGLLL 203
Query: 448 --IGSNFRWSDFSAKTRFGWDYLP 469
+G R R L
Sbjct: 204 DKLGGRARKE-----YRSVCGLLA 222
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 32.4 bits (74), Expect = 0.73
Identities = 13/58 (22%), Positives = 19/58 (32%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
L E E E E ++ + E E + EEE E + + EL
Sbjct: 129 LVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLRYPMNKGEL 186
Score = 32.0 bits (73), Expect = 1.0
Identities = 15/61 (24%), Positives = 22/61 (36%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E E E E E ++ + E E + EEE E + + N+
Sbjct: 124 EAEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLRYPMNK 183
Query: 405 G 405
G
Sbjct: 184 G 184
Score = 32.0 bits (73), Expect = 1.0
Identities = 14/60 (23%), Positives = 19/60 (31%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
G E E E E E E E ++ + E E + EEE E +
Sbjct: 120 GGGGEAEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLRY 179
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 32.7 bits (75), Expect = 0.73
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEE 396
+GL EEE E +E E EE+++ +EE E + E+ +E ++ EE+E+
Sbjct: 496 SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEK 555
Query: 397 EEKELENEGHCDFVKLREMLIRTNMEDMREKT 428
EK + L+E L ++E+++ KT
Sbjct: 556 IEKAVAE--------LKEALKGEDVEEIKAKT 579
>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator. This entry
represents the conserved N-terminal region of SWAP
(suppressor-of-white-apricot protein) proteins. This
region contains two highly conserved motifs, viz: DRY
and EERY, which appear to be the sites for alternative
splicing of exons 2 and 3 of the SWAP mRNA. These
proteins are thus thought to be involved in
auto-regulation of pre-mRNA splicing. Most family
members are associated with two Surp domains pfam01805
and an Arginine- serine-rich binding region towards the
C-terminus.
Length = 121
Score = 30.9 bits (70), Expect = 0.74
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEE 380
L + N + +EE+E EE EE + EE E+EEEE+ E +
Sbjct: 47 LLDYIPRGSRNRRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQ 102
Score = 30.1 bits (68), Expect = 1.4
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 329 DKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
NL FD + + +EE+E EE EE + + + EE E+EE
Sbjct: 35 QDNLIDRFDVRALLDYIPRGSRNRRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEE 94
Query: 389 EEEEEEEEEEKELE 402
EE+ E +++K
Sbjct: 95 EEKRELAQKKKSKG 108
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 30.1 bits (68), Expect = 0.76
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 20/83 (24%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTN 420
++ + +EE E+EEEE+ E + +E EE+E+ E+ E+E + T
Sbjct: 28 KKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGMN------------LTE 75
Query: 421 MEDMREKTHCRHYELYRKKRLEE 443
E R +E ++KRL+E
Sbjct: 76 AE--------RAFEEAQRKRLKE 90
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor Elf1;
Provisional.
Length = 99
Score = 30.4 bits (69), Expect = 0.78
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 331 NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEE 366
++Y+ F Y G E +E + EE EEE E E E E
Sbjct: 64 DVYNKFIDLYLEGKIEIKERKNEETEEENEIEGESE 99
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 32.2 bits (74), Expect = 0.78
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE EEE EE EEE +E E E+E E E++ E++ ++ ++ ++EE EE +
Sbjct: 63 LEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAE 122
Query: 404 E 404
E
Sbjct: 123 E 123
>gnl|CDD|221562 pfam12406, DUF3664, Surface protein. This family of proteins is
found in eukaryotes. Proteins in this family are
typically between 131 and 312 amino acids in length.
Length = 100
Score = 30.4 bits (68), Expect = 0.78
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N L ++ E+ +E ++E E ++ + E E EE E E E E EE +E ++ E
Sbjct: 21 NQLIDQAEQSQEPTQQEPIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEE 80
Query: 402 ENE 404
E
Sbjct: 81 PTE 83
Score = 29.3 bits (65), Expect = 2.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++E E ++ + E E EE E E E E EE +E ++ EE E ++ ++E
Sbjct: 35 QQEPIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEPTETQDSKQE 90
Score = 29.3 bits (65), Expect = 2.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E ++E E ++ + E E EE E E E E EE +E ++ EE E ++ + E
Sbjct: 31 QEPTQQEPIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEPTETQDSKQE 90
Score = 28.9 bits (64), Expect = 3.0
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L+ + ++ E+ +E ++E E ++ + E E EE E E E E EE KE
Sbjct: 18 LDPNQLIDQAEQSQEPTQQEPIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKE 74
Score = 27.3 bits (60), Expect = 8.0
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E ++ + E E EE E E E E EE +E ++ EE E ++ ++E +
Sbjct: 38 PIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEPTETQDSKQEPTQ 93
>gnl|CDD|236356 PRK08944, motB, flagellar motor protein MotB; Reviewed.
Length = 302
Score = 32.3 bits (74), Expect = 0.79
Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 344 LEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
LE + E + +++ ++ E E + E+ +E+ E+ ++ ++ E+E E+
Sbjct: 104 LEFQAGESDSAGGTQQQRGKQRGGEASAEVKAEKAAAQEQIEDLVKKLAQQLEKEIEDGA 163
Query: 399 KELENEGHCDFVKLREMLIRTNMEDMREK 427
E+E+ G ++++IR +REK
Sbjct: 164 IEIESLG-------QQIIIR-----IREK 180
Score = 30.4 bits (69), Expect = 2.6
Identities = 10/58 (17%), Positives = 28/58 (48%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ E + E + +++ ++ E E + E+ +E+ E+ ++ ++LE E
Sbjct: 101 QQTLEFQAGESDSAGGTQQQRGKQRGGEASAEVKAEKAAAQEQIEDLVKKLAQQLEKE 158
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 30.9 bits (70), Expect = 0.80
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
LE+ + ++ +E++EEEE + + E E E + ++ E+ E E+ +E+EE+E
Sbjct: 57 LEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQE 108
>gnl|CDD|219236 pfam06949, DUF1292, Protein of unknown function (DUF1292). This
family consists of several hypothetical bacterial
proteins of around 90 residues in length. The function
of this family is unknown.
Length = 74
Score = 29.4 bits (67), Expect = 0.82
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 342 NGLEEEEEEEEEEEEEEEE----EEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEE 391
G E E E + E E +E EEE+E+ E EE+E+ EEE E++EE
Sbjct: 2 EGNEVEFEVLDTFEVEGKEYILLLPVGEEEDEDIEVYIFKIEEDEDGEEELLPIEDDEEW 61
Query: 392 EEEEEEEKELENE 404
+ EE + L E
Sbjct: 62 DMVEEAFETLLEE 74
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 32.3 bits (73), Expect = 0.84
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+++ E EE EEE+ + + + + +++ E EE EEEEE ++EK
Sbjct: 110 KQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEK 164
Score = 31.9 bits (72), Expect = 1.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+++ E EE EEE+ + + + + +++ E EE EEEEE +KE
Sbjct: 110 KQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEK 164
Score = 31.5 bits (71), Expect = 1.6
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
LE+ ++E +EE + + E + EEE E+E+ + ++ EE + +
Sbjct: 7 LEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRR 62
Score = 31.1 bits (70), Expect = 2.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E EE EEE+ + + + + +++ E EE EEEEE ++E+ K
Sbjct: 113 REGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAK 166
Score = 30.7 bits (69), Expect = 2.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
L +++ E EE EEE+ + + + + +++ E EE EEEEE ++
Sbjct: 108 LAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDK 162
Score = 30.3 bits (68), Expect = 3.1
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E++ E+ ++E +EE + + E + EEE E+E+ + ++ +E
Sbjct: 2 DPEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIE 57
Score = 30.3 bits (68), Expect = 3.4
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E EE EEE+ + + + + +++ E EE EEEEE ++E+ + +
Sbjct: 113 REGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAK 168
Score = 29.9 bits (67), Expect = 4.4
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
++ E++ E+ ++E +EE + + E + EEE E+E+ + ++ E
Sbjct: 1 MDPEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEE 58
Score = 29.6 bits (66), Expect = 5.7
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+++ E EE EEE+ + + + + +++ E EE EEEEE + E
Sbjct: 110 KQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKE 163
>gnl|CDD|147685 pfam05663, DUF809, Protein of unknown function (DUF809). This
family consists of several proteins of unknown function
Raphanus sativus (Radish) and Brassica napus (Rape).
Length = 138
Score = 30.9 bits (69), Expect = 0.86
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E +EE++E + E E +EE++E + E E +EE+KE+EN
Sbjct: 96 EIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVEN 134
>gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar
hook-basal body protein (fliF). Component of the M
(cytoplasmic associated) ring, one of four rings
(L,P,S,M) which make up the flagellar hook-basal body
which is a major portion of the flagellar organelle.
Although the basic structure of the flagella appears to
be similar for all bacteria, additional rings and
structures surrounding the basal body have been observed
for some bacteria (eg Vibrio cholerae and Treponema
pallidum) [Cellular processes, Chemotaxis and motility].
Length = 555
Score = 32.2 bits (73), Expect = 0.86
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+F + E E EEE ++ EE+E+E E E + ++ E +EE E +
Sbjct: 474 FFKIIRPLERRRREREEELAKQAHLREEQEDEVEGELIKLDDLVGGINEGDEEVSNAELR 533
Query: 400 ELENEGHCDFVKL 412
+ E D KL
Sbjct: 534 AMAKEKPEDVAKL 546
>gnl|CDD|235861 PRK06782, PRK06782, flagellar motor switch protein; Reviewed.
Length = 528
Score = 32.5 bits (74), Expect = 0.87
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EEEE EE E E+ E + E +E ++ E + L++
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDTSILQD 461
Score = 31.0 bits (70), Expect = 2.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+ +EEEE EE E E+ E + E +E ++ E +
Sbjct: 415 PMVKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 30.2 bits (68), Expect = 4.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EEEE EE E E+ E + E +E ++ E
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYM 454
Score = 29.4 bits (66), Expect = 6.4
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
K L +EEEE EE E E+ E + E +E ++ E +
Sbjct: 406 KEMVRLLLYPMVKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.4 bits (66), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+EEEE EE E E+ E + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.4 bits (66), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+EEEE EE E E+ E + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.4 bits (66), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+EEEE EE E E+ E + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.4 bits (66), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+EEEE EE E E+ E + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.4 bits (66), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+EEEE EE E E+ E + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.4 bits (66), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+EEEE EE E E+ E + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.4 bits (66), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+EEEE EE E E+ E + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.4 bits (66), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+EEEE EE E E+ E + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.0 bits (65), Expect = 8.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+EEEE EE E E+ E + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
>gnl|CDD|221919 pfam13094, CENP-Q, CENP-A-nucleosome distal (CAD) centromere
subunit. CENP-Q is one of the components that assembles
onto the CENP-A-nucleosome distal (CAD) centromere. The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying
centromere identity. CENP-A nucleosomes directly recruit
a proximal CENP-A nucleosome associated complex (NAC)
comprised of CENP-M, CENP-N and CENP-T, CENP-U(50),
CENP-C and CENP-H. Assembly of the CENP-A NAC at
centromeres is dependent on CENP-M, CENP-N and CENP-T.
Additionally, there are seven other subunits which make
up the CENP-A-nucleosome distal (CAD) centromere,
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and
CENP-S, also assembling on the CENP-A NAC. Fta7 is the
equivalent component of the fission yeast Sim4 complex.
Length = 159
Score = 31.2 bits (71), Expect = 0.91
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEEEEEEEEEEEE 397
LEEE EE E E++ E +E E+ + E E EEE + E E EE E ++
Sbjct: 46 LEEEIRREEAELEKDLEYLQELEKNAKALEREREEESKNLHPVLRLLESEVLEENELLQD 105
Query: 398 EKELENEGHCDFVKLREML-----IRTNMEDMREKTH 429
+E + E+L + ++E ++
Sbjct: 106 SLLELSERNFSPNLDPELLDLLKQLNKHLESLQGNLE 142
>gnl|CDD|225340 COG2719, SpoVR, Uncharacterized conserved protein [Function
unknown].
Length = 495
Score = 32.0 bits (73), Expect = 0.94
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ EEE +EE EE + + + ++ E ++ E EE
Sbjct: 182 ISSEEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSEPEE 230
Score = 32.0 bits (73), Expect = 1.2
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EEE +EE EE + + + ++ E ++ E E++L
Sbjct: 185 EEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSEPEEDL 232
Score = 31.6 bits (72), Expect = 1.2
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEKELE 402
EEE +EE EE + + + ++ E ++ E EE+ E+ LE
Sbjct: 185 EEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSEPEEDLLYFIEKNSPLLE 244
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 31.9 bits (72), Expect = 1.0
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 2/107 (1%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
F CK + E E+ + EE+E E + E + E+ +E + +
Sbjct: 19 FSCKKEDKESGLREMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKG 78
Query: 396 EEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLE 442
E +K + D L + ++ + R Y L +E
Sbjct: 79 ESDKFVGTPLVKDDYDLVYIQALYTSTNIGKDN--RIYYLDHADNVE 123
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 32.2 bits (74), Expect = 1.0
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+ E E + E + ++ EE+ +EEE EE E+ E +EE +
Sbjct: 176 SYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWR 235
Query: 403 NEGHCDFVKLREMLIRTNMEDM-REKTHCRHY----ELYRKKRLEE 443
K ++ + E + R Y E + ++E+
Sbjct: 236 --------KFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEK 273
Score = 29.9 bits (68), Expect = 4.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
K E + E + ++ EE+ +EEE EE E+ E +EE E
Sbjct: 179 KRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAE 232
>gnl|CDD|217356 pfam03078, ATHILA, ATHILA ORF-1 family. ATHILA is a group of
Arabidopsis thaliana retrotransposons belonging to the
Ty3/gypsy family of the long terminal repeat (LTR) class
of eukaryotic retrotransposons. The central region of
ATHILA retrotransposons contains two or three open
reading frames (ORFs). This family represents the ORF1
product. The function of ORF1 is unknown.
Length = 456
Score = 31.9 bits (72), Expect = 1.0
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E ++ E EE EE+ +EE+E++E E E+ + EE E K L
Sbjct: 359 SKEILGATDDIEHTEEATEEDVDEEDEDDEAELEKFDTSMYHFEEHVPPARESKSL 414
Score = 30.0 bits (67), Expect = 4.4
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
F ++ E EE EE+ +EE+E++E E E+ + EE E +
Sbjct: 356 FKPSKEILGATDDIEHTEEATEEDVDEEDEDDEAELEKFDTSMYHFEEHVPPARESKSLS 415
Query: 396 EEEKEL 401
E K
Sbjct: 416 EAHKNN 421
Score = 29.6 bits (66), Expect = 6.3
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ E EE EE+ +EE+E++E E E+ + EE E + E + + +
Sbjct: 366 TDDIEHTEEATEEDVDEEDEDDEAELEKFDTSMYHFEEHVPPARESKSLSEAHKNNSKLQ 425
Query: 405 GHCDF 409
C
Sbjct: 426 KWCKK 430
>gnl|CDD|144046 pfam00308, Bac_DnaA, Bacterial dnaA protein.
Length = 219
Score = 31.5 bits (72), Expect = 1.0
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 22/106 (20%)
Query: 106 PGKAYKPC----ETGLGKSTLMDSLFNTSFESTPSPHSLPSVKLKAHTYELQE--NNVKL 159
PGKAY P GLGK+ L+ ++ N + + P+ V L + + ++
Sbjct: 30 PGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLR----VVYLTSEEFLNDFVDALRD 85
Query: 160 KE-DSFKSIVDYI------DNQFEAY---LQEELKIKRSLNTYHDN 195
+ ++FK + D QF A QEE + N H+N
Sbjct: 86 NKIEAFKKSYRNVDLLLIDDIQFLAGKEKTQEEF--FHTFNALHEN 129
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 31.5 bits (71), Expect = 1.0
Identities = 10/53 (18%), Positives = 34/53 (64%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ +++E +E++E+ EE E + E++E+ ++ + + + +++ ++ + K +E
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAME 203
Score = 30.8 bits (69), Expect = 2.0
Identities = 10/55 (18%), Positives = 35/55 (63%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ +++E +E++E+ EE E + E++E+ ++ + + + +++ ++ +++ EG
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEEG 205
Score = 30.4 bits (68), Expect = 2.6
Identities = 10/54 (18%), Positives = 34/54 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ +++E +E++E+ EE E + E++E+ ++ + + + +++ ++ + + EE
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEE 204
Score = 29.2 bits (65), Expect = 5.5
Identities = 10/59 (16%), Positives = 36/59 (61%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ +++E +E++E+ EE E + E++E+ ++ + + + +++ ++ + + E+ L +
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEEGLSPD 209
Score = 28.8 bits (64), Expect = 6.8
Identities = 11/53 (20%), Positives = 32/53 (60%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
N +E +E++E+ EE E + E++E+ ++ + + + +++ ++ + + EE
Sbjct: 152 NQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEE 204
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 345 EEEEEEEEEEEEEEEEEEEEE 365
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 346 EEEEEEEEEEEEEEEEEEEEE 366
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 347 EEEEEEEEEEEEEEEEEEEEE 367
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 348 EEEEEEEEEEEEEEEEEEEEE 368
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 349 EEEEEEEEEEEEEEEEEEEEE 369
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 350 EEEEEEEEEEEEEEEEEEEEE 370
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 351 EEEEEEEEEEEEEEEEEEEEE 371
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 352 EEEEEEEEEEEEEEEEEEEEE 372
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 353 EEEEEEEEEEEEEEEEEEEEE 373
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 354 EEEEEEEEEEEEEEEEEEEEE 374
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 355 EEEEEEEEEEEEEEEEEEEEE 375
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 356 EEEEEEEEEEEEEEEEEEEEE 376
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 357 EEEEEEEEEEEEEEEEEEEEE 377
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 358 EEEEEEEEEEEEEEEEEEEEE 378
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 359 EEEEEEEEEEEEEEEEEEEEE 379
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 360 EEEEEEEEEEEEEEEEEEEEE 380
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 361 EEEEEEEEEEEEEEEEEEEEE 381
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 362 EEEEEEEEEEEEEEEEEEEEE 382
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 363 EEEEEEEEEEEEEEEEEEEEE 383
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 364 EEEEEEEEEEEEEEEEEEEEE 384
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 365 EEEEEEEEEEEEEEEEEEEEE 385
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 366 EEEEEEEEEEEEEEEEEEEEE 386
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 367 EEEEEEEEEEEEEEEEEEEEE 387
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 368 EEEEEEEEEEEEEEEEEEEEE 388
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 369 EEEEEEEEEEEEEEEEEEEEE 389
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 370 EEEEEEEEEEEEEEEEEEEEE 390
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 371 EEEEEEEEEEEEEEEEEEEEE 391
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 372 EEEEEEEEEEEEEEEEEEEEE 392
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 373 EEEEEEEEEEEEEEEEEEEEE 393
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 374 EEEEEEEEEEEEEEEEEEEEE 394
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 375 EEEEEEEEEEEEEEEEEEEEE 395
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 376 EEEEEEEEEEEEEEEEEEEEE 396
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 377 EEEEEEEEEEEEEEEEEEEEE 397
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 378 EEEEEEEEEEEEEEEEEEEEE 398
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 3.5
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 380 EEEEEEEEEEEEEEEEEEEKEL 401
EEEEEEE ++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDM 304
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 32.3 bits (74), Expect = 1.1
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 25/109 (22%)
Query: 329 DKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----- 383
K+L + ++ +++ E+ EEEE EE++E ++E++EEE
Sbjct: 1033 KKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLL 1092
Query: 384 --------EEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDM 424
+E+ E+ E E++EKELE L T +DM
Sbjct: 1093 SMPIWSLTKEKVEKLNAELEKKEKELEK------------LKNTTPKDM 1129
Score = 30.8 bits (70), Expect = 2.6
Identities = 6/31 (19%), Positives = 21/31 (67%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEE 372
+ E++++ E ++ E+E++E++E+++
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.7
Identities = 6/30 (20%), Positives = 22/30 (73%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1359 KKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 374
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 375
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.0 bits (68), Expect = 5.5
Identities = 6/29 (20%), Positives = 20/29 (68%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ + E++++ E ++ E+E++E++E +
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|223363 COG0286, HsdM, Type I restriction-modification system
methyltransferase subunit [Defense mechanisms].
Length = 489
Score = 32.0 bits (73), Expect = 1.1
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 324 SNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-- 381
+ I+K + ++ + K G + EE E + EEEEE+ + +E +
Sbjct: 404 TEENIEKIVDTYREFKEIEGFSKSVSLEEIRENDYNLNPGRYVAEEEEEDIDLDELLQEL 463
Query: 382 -EEEEEEEEEEEEEEEEEKELENE 404
E + E E E+E EE KEL
Sbjct: 464 SEIDAELAELEKELEEILKELLLN 487
>gnl|CDD|216110 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 32.0 bits (74), Expect = 1.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ +E E E E E E E EEE ++ + ELE
Sbjct: 299 KRQEAAEAEAEAAEAEAAAEPEEESWDDVLPVDPLELE 336
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 32.1 bits (73), Expect = 1.1
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVK 411
E++EE+EE+ EE +E+EEE+ E++ GH +K
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEHFSILGHPMCLK 89
Score = 31.3 bits (71), Expect = 1.7
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEE 370
LE++EE+EE+ EE +E+EEE+ E+E
Sbjct: 52 LEQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 30.5 bits (69), Expect = 3.3
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEE 371
L E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 51 LLEQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEE 372
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEE 373
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEE 374
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEE 375
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEE 376
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEE 377
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEE 378
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEE 379
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEE 380
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEE 381
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEE 382
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEE 383
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEE 384
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEE 385
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEE 386
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEE 387
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEE 388
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEE 389
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEE 390
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEE 391
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEE 392
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEE 393
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEE 394
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEE 395
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEE 396
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEEEE 398
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 31.9 bits (73), Expect = 1.1
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
+ E+E EE + E E ++ E E EEE KEL E
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEELKELAEET 270
Score = 29.2 bits (66), Expect = 6.7
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+ + E+E EE + E E ++ E E EEE
Sbjct: 220 IGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+ E+E EE + E E ++ E E EEE
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+ E+E EE + E E ++ E E EEE
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+ E+E EE + E E ++ E E EEE
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ E+E EE + E E ++ E E EEE
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ E+E EE + E E ++ E E EEE
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ E+E EE + E E ++ E E EEE
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ E+E EE + E E ++ E E EEE
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ E+E EE + E E ++ E E EEE
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ E+E EE + E E ++ E E EEE
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ E+E EE + E E ++ E E EEE
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
>gnl|CDD|222762 pfam14456, alpha-hel2, Alpha-helical domain 2. An alpha-helical
domain found in gene neighborhoods encoding genes
containing bacterial homologs of components of the
ubiquitin modification pathway such as the E1, E2, Ub
and JAB peptidase proteins.
Length = 322
Score = 31.7 bits (72), Expect = 1.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
+ Y++G ++EEE E E E E++EE EE
Sbjct: 128 IRDLASYWYWDGEDDEEEALEVLEGEGEDDEEAAAEEYFSRVRPA 172
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 31.6 bits (72), Expect = 1.1
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E E++++ EEE E ++ +E +E E+ ++ EE E+ +E + E +E K+
Sbjct: 116 IERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAR 175
Query: 404 EGHCDFVKLRE 414
E H +L
Sbjct: 176 EIHEKIQELAN 186
Score = 30.8 bits (70), Expect = 2.1
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
++ G + E E E E++++ EEE E ++ +E +E E+ ++ EE E+
Sbjct: 101 EFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKL 160
Query: 399 KELENE 404
KEL+ E
Sbjct: 161 KELKAE 166
Score = 30.0 bits (68), Expect = 3.5
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--- 395
+ L +E E+ ++ EE E+ +E + E +E +++ E E+ +E E +E EE
Sbjct: 138 QKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIK 197
Query: 396 -----EEEKELENEGHCDFVKLREM 415
+E ++ +E H +FV+L +
Sbjct: 198 LFEEADELRKEADELHEEFVELSKK 222
Score = 29.6 bits (67), Expect = 5.2
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE E ++ +E +E E+ ++ EE E+ +E + E +E +++ E E+ +EL NE
Sbjct: 131 EEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANE 187
Score = 29.3 bits (66), Expect = 6.0
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ L+E+ E + E E E E++++ EEE E ++ +E +E E+ +
Sbjct: 92 YRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAK 151
Query: 401 LENEGHCDFVKLREML--IRTNMEDMREK 427
E + +L+ + ++ ++ EK
Sbjct: 152 KALEENEKLKELKAEIDELKKKAREIHEK 180
>gnl|CDD|225281 COG2425, COG2425, Uncharacterized protein containing a von
Willebrand factor type A (vWA) domain [General function
prediction only].
Length = 437
Score = 32.0 bits (73), Expect = 1.2
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E EE ++ + E E+ E E E E++EE E E EE EE L +
Sbjct: 110 ERWEELLQDLQREGSEDFLEGEREGLLSEKQEEISLSGEMEGILEEVEELISGRLWDMS 168
Score = 30.4 bits (69), Expect = 3.1
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ + L ++ + E E+ E E E E++EE E E EE EE +
Sbjct: 109 LERWEELLQDLQREGSEDFLEGEREGLLSEKQEEISLSGEMEGILEEVEELISGRLWDMS 168
Query: 398 EKEL 401
EL
Sbjct: 169 AGEL 172
Score = 29.3 bits (66), Expect = 8.3
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E EE ++ + E E+ E E E E++EE E E +E+E
Sbjct: 110 ERWEELLQDLQREGSEDFLEGEREGLLSEKQEEISLSGEMEGILEEVEELIS 161
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic region
found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 29.8 bits (67), Expect = 1.2
Identities = 13/63 (20%), Positives = 25/63 (39%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
EE+ +EEEE EEEE++EE + E + + + + + + +
Sbjct: 7 EEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDR 66
Query: 406 HCD 408
Sbjct: 67 ARY 69
Score = 29.4 bits (66), Expect = 1.4
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+ +EEEE EEEE++EE + E + + + + + +
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRD 63
Score = 29.0 bits (65), Expect = 2.3
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
LEE+ +EEEE EEEE++EE + E + + + +
Sbjct: 6 LEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRR 59
Score = 28.6 bits (64), Expect = 3.0
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
L+EEEE EEEE++EE + E + + + +
Sbjct: 9 DLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRR 61
Score = 28.6 bits (64), Expect = 3.3
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE+ +EEEE EEEE++EE + E + + + + +
Sbjct: 4 SALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRR 59
Score = 27.4 bits (61), Expect = 7.8
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
EE+ +EEEE EEEE++EE + E + + ++ +
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRR 58
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 31.2 bits (71), Expect = 1.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
GL + E E EE E E+ E +EE EE + E E+ + E+ E
Sbjct: 65 PGLGDMSEVEPEEPPTPEGAPAEKRELKEEGEEPKSEPEKADLEDGE 111
Score = 30.1 bits (68), Expect = 3.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E E EE E E+ E +EE EE + E E+ + E+ EK
Sbjct: 72 EVEPEEPPTPEGAPAEKRELKEEGEEPKSEPEKADLEDGEK 112
Score = 29.7 bits (67), Expect = 4.0
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E E EE E E+ E +EE EE + E E+ + E+ E+ K L
Sbjct: 72 EVEPEEPPTPEGAPAEKRELKEEGEEPKSEPEKADLEDGEKRTKIL 117
Score = 28.5 bits (64), Expect = 8.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E EE E E+ E +EE EE + E E+ +LE+
Sbjct: 72 EVEPEEPPTPEGAPAEKRELKEEGEEPKSEPEKADLEDG 110
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 31.9 bits (72), Expect = 1.3
Identities = 14/82 (17%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 328 IDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEE 382
++K L+ +F Y + L+ E+ E E+E + E+ + + + + E+ +
Sbjct: 229 VEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQ 288
Query: 383 EEEEEEEEEEEEEEEEKELENE 404
E + ++ + E+ + L+++
Sbjct: 289 EAMKISQKIKTLREKWRALKSD 310
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 31.3 bits (71), Expect = 1.3
Identities = 13/67 (19%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 335 FFDCKYF-NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
FF K LE E+ + +++ E + +++ E+ + + + E ++ +E
Sbjct: 6 FFRAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQE 65
Query: 394 EEEEEKE 400
++EE+K+
Sbjct: 66 KKEEKKK 72
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 30.3 bits (69), Expect = 1.4
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L+EE E EE+ EE +E EE ++ +E EE + ++E E +E E + + + N
Sbjct: 44 LKEEIERLEEKLEEYKELEETLQKTLVVAQETAEEVKANAQKEAELIIKEAEAKAERIVN 103
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKK 439
+ + + K + T ++++ R L+R +
Sbjct: 104 DANEEAKK-----LATEYDELK-----RQSRLFRTR 129
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 31.8 bits (73), Expect = 1.4
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
G + +E E E E E E ++E+E E E E + + ++
Sbjct: 445 GADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDD 501
Score = 29.5 bits (67), Expect = 6.3
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E E ++E+E E E E + + +++ + ELE
Sbjct: 456 RAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAA 514
Score = 29.5 bits (67), Expect = 6.8
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 344 LEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE E + +E E E E E E ++E+E E E E +
Sbjct: 438 LEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAP 497
Query: 402 ENEGHCDFVKLRE 414
++ +L E
Sbjct: 498 ADDDAALRAQLAE 510
Score = 29.1 bits (66), Expect = 9.7
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L E E E E ++E+E E E E + + +++ + E E
Sbjct: 455 LRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAA 514
Query: 401 LE 402
L
Sbjct: 515 LA 516
>gnl|CDD|226447 COG3937, COG3937, Uncharacterized conserved protein [Function
unknown].
Length = 108
Score = 29.7 bits (67), Expect = 1.4
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++ + +E + E EE+ + EE + E + E +E E + E + +LEN+
Sbjct: 49 DDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105
Score = 28.2 bits (63), Expect = 5.6
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L + +E + E EE+ + EE + E + E +E E + E + + E + K
Sbjct: 52 LRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 31.5 bits (72), Expect = 1.5
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K L+EE + +E + E E+ +E + E+ ++ EE ++E +E
Sbjct: 182 KKLQALKEEIASLRQLADELNLCDPLELEKARQELRSLSVKISEKRKQLEELQQELQELT 241
Query: 399 KELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
+E +L E + E +RE+ CR + +L+
Sbjct: 242 IAIE-ALTNKKSELLEEI--AEAEKIREE--CRGWSAKEISKLKA 281
>gnl|CDD|219311 pfam07149, Pes-10, Pes-10. This family consists of several
Caenorhabditis elegans pes-10 and related proteins.
Members of this family are typically around 400 residues
in length. The function of this family is unknown.
Length = 370
Score = 31.3 bits (71), Expect = 1.5
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
K L++E EE+E+EEE ++ + EE E E +EE +E E
Sbjct: 157 KVDQLLKDEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYE 205
Score = 30.2 bits (68), Expect = 3.6
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+++ ++E EE+E+EEE ++ + EE E E +EE +E E
Sbjct: 158 VDQLLKDEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYE 205
Score = 30.2 bits (68), Expect = 3.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E EE+E+EEE ++ + EE E E +EE +E E E+
Sbjct: 164 DEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYEWAVMEIC 212
Score = 29.4 bits (66), Expect = 5.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+E EE+E+EEE ++ + EE E E +EE +E E
Sbjct: 164 DEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYE 205
Score = 29.4 bits (66), Expect = 5.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+E EE+E+EEE ++ + EE E E +EE +E E
Sbjct: 164 DEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYE 205
Score = 29.4 bits (66), Expect = 5.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+E EE+E+EEE ++ + EE E E +EE +E E
Sbjct: 164 DEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYE 205
Score = 29.4 bits (66), Expect = 6.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E EE+E+EEE ++ + EE E E +EE +E + E
Sbjct: 164 DEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYEWAVME 210
Score = 29.0 bits (65), Expect = 7.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
D + + EE+E+EEE ++ + EE E E +EE +E E
Sbjct: 158 VDQLLKDEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYE 205
>gnl|CDD|220624 pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA-interacting
nuclear protein NIP30. This is a the N-terminal 100
amino acids of a family of proteins conserved from
plants to humans. The full-length protein has putatively
been called NEFA-interacting nuclear protein NIP30,
however no reference could be found to confirm this.
Length = 99
Score = 29.7 bits (67), Expect = 1.5
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 23/82 (28%)
Query: 345 EEEEEEEEEEEEEEEE-----------EEEEEEEEEEEE------------EEEEEEEEE 381
EE + + E EEE E +++++EE EE E+E E +E
Sbjct: 16 EEVRAPRDPKAEPEEEYDGRSLYERLQENKDKKQEEFEEKFKLKNQFRGLDEDEVEFLDE 75
Query: 382 EEEEEEEEEEEEEEEEEKELEN 403
EE E++ + EE +ELE
Sbjct: 76 VEESRRAAEKKRKREEAEELEE 97
Score = 28.1 bits (63), Expect = 4.6
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
F GL+E+E E +E EE E++ + EE EE EE
Sbjct: 62 FRGLDEDEVEFLDEVEESRRAAEKKRKREEAEELEE 97
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 29.9 bits (67), Expect = 1.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEE 368
G + E ++EE++EEEEEEE++
Sbjct: 80 GAATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 29.5 bits (66), Expect = 2.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 377 EEEEEEEEEEEEEEEEEEEEEEKEL 401
+ E ++EE++EEEEEEE +L
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDDL 106
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEE 369
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEE 370
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEE 371
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEE 372
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEE 373
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEE 374
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEE 375
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEE 376
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEE 377
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEE 378
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEE 379
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEE 380
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEE 381
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEE 382
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEE 383
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEE 384
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEE 385
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEE 386
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEE 387
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEE 388
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEE 389
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEE 390
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEE 391
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEE 392
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEE 393
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEE 394
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEE 395
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEE 396
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEE 397
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEE 398
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed.
Length = 196
Score = 30.9 bits (71), Expect = 1.5
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 209 HGLKSLDLVCMKKLD-SKVNIIPIIAKADTISKSELQKFKTNIMTELTSNGVHIYEF 264
H LK LDL ++ L + ++ ++ KAD + K E +K + L + F
Sbjct: 118 HPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174
>gnl|CDD|224548 COG1633, COG1633, Uncharacterized conserved protein [Function
unknown].
Length = 176
Score = 30.5 bits (69), Expect = 1.5
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+EE + E+ E+ +E EEEE E E E E + +E E+ + +E
Sbjct: 64 DEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQPGKEMEKSVSYLEAIEA 120
Score = 30.1 bits (68), Expect = 2.5
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K F L +EE + E+ E+ +E EEEE E E E E + +E E+ E
Sbjct: 57 KLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQPGKEMEKSVSYLE 116
Query: 399 K 399
Sbjct: 117 A 117
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 31.4 bits (72), Expect = 1.5
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 22/120 (18%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L ++ E EEEE E E ++ +++ + E++ E+EE E+ +++ E +
Sbjct: 387 LHDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446
Query: 404 EGHCDFVK------LREMLIRTN--MEDM-------------REKTHCRHYELY-RKKRL 441
+G K L E L RT +E+ +TH +E+Y RKK+
Sbjct: 447 KGPDGETKKVDPDPLGEKLARTEDPLEEAMKFLKPLLQLSPDNIETHLLAFEVYIRKKKY 506
>gnl|CDD|172637 PRK14148, PRK14148, heat shock protein GrpE; Provisional.
Length = 195
Score = 30.9 bits (69), Expect = 1.5
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVK 411
++E+ E++ + E + E +E EE EE+ E ++ KELE+ CD K
Sbjct: 3 KQEKSNVEDKSLDIETAAQVETAQESASGALEELSVEEQLERAKDTIKELEDS--CDQFK 60
Query: 412 LREMLIRTNMEDMREK 427
+ + ME++R++
Sbjct: 61 DEALRAKAEMENIRKR 76
>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2
domain [General function prediction only].
Length = 1227
Score = 31.7 bits (72), Expect = 1.5
Identities = 42/292 (14%), Positives = 88/292 (30%), Gaps = 60/292 (20%)
Query: 132 ESTPSPHSLPSVKLKAHTYELQENNVKLKEDSFKSIVDYIDNQFEAYLQEELKIKRSLNT 191
E + P + + L+ ++ ++ + Y + T
Sbjct: 658 EGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPI-YNAGGSSSK------------T 704
Query: 192 YHDNRIHVCLYFICPTGHGLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQKFKTN-- 249
+D I + L +++ A + + L K++T
Sbjct: 705 VYDTPIGAIRVSVRK------------ANDLRNEIPGGKSDPYATVLVNN-LVKYRTIYG 751
Query: 250 ---------------IMTELT--SNGVHIYEFPTDDETMSDVNAAMTIFSSIPCDRSLIH 292
+ ++ + YE DD + +VN ++ S D +L+
Sbjct: 752 SSTLNPIWNEILYVPVTSKNQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811
Query: 293 TIFPPCLRSTSPSSPPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEE 352
TI + L++ TI F+ LEE ++
Sbjct: 812 TIDG-----AEETGK--------LSLTGKK-VKGTITYKC-RFYPAVIVLSLEEVRYVDK 856
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E+ + E+ + +E+ ++E+ EE E EE + + K NE
Sbjct: 857 VSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNE 908
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 31.6 bits (72), Expect = 1.6
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
G EE E E + + E+ E EE E E E E++
Sbjct: 230 GFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKR 273
Score = 30.4 bits (69), Expect = 3.6
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE E E + + E+ E EE E E E E+K
Sbjct: 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRR 274
Score = 30.0 bits (68), Expect = 5.0
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
EE E E + + E+ E EE E E E E++ K
Sbjct: 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRK 275
Score = 29.7 bits (67), Expect = 6.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE E E + + E+ E EE E E E E++ ++L
Sbjct: 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKL 276
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 31.5 bits (72), Expect = 1.6
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E + + + EE + E E + +E E+ + ++ E+E E EK L+
Sbjct: 54 KEAVADIDAKIEELKAEAIESLDIDEREDIYAQIDKLEKEAYEILEKVLD 103
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 31.4 bits (72), Expect = 1.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
Y ++ E E E E E+EE E+ E E+ EE+EEE
Sbjct: 834 GYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
Score = 31.1 bits (71), Expect = 2.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
K+ K NG E E E E+EE E+ E E+ EE+EEE
Sbjct: 831 KSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 31.5 bits (71), Expect = 1.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEEE++E EE E+E E EE E E + E+E + E+ E + ++ E E
Sbjct: 289 LEEEKKELEELREKEGEAEEAASSLEAELNRTKSEKESKAREKMVEIPLKLQQASSEAEE 348
Score = 29.6 bits (66), Expect = 5.6
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L++E EEE++E EE E+E E EE E E + E+E + E+ E + ++ +
Sbjct: 285 LKQELEEEKKELEELREKEGEAEEAASSLEAELNRTKSEKESKAREKMVEIPLKLQQASS 344
Query: 404 E 404
E
Sbjct: 345 E 345
>gnl|CDD|233222 TIGR00986, 3a0801s05tom22, mitochondrial import receptor subunit
Tom22. The mitochondrial protein translocase (MPT)
family, which brings nuclearly encoded preproteins into
mitochondria, is very complex with 19 currently
identified protein constituents.These proteins include
several chaperone proteins, four proteins of the outer
membrane translocase (Tom) import receptor, five
proteins of the Tom channel complex, five proteins of
the inner membrane translocase (Tim) and three "motor"
proteins. This family is specific for the Tom22 proteins
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 145
Score = 30.3 bits (68), Expect = 1.6
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
L E E+E ++ E++ E EE++E+ + + E+ + + E EEE
Sbjct: 4 LTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 28.8 bits (64), Expect = 5.8
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
++ E E+E ++ E++ E EE++E+ + + E+ + + E EEE
Sbjct: 2 VQLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 28.4 bits (63), Expect = 6.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ E E+E ++ E++ E EE++E+ + + E+ + + E EEE
Sbjct: 3 QLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 28.4 bits (63), Expect = 6.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ E E+E ++ E++ E EE++E+ + + E+ + + E EEE
Sbjct: 3 QLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 28.4 bits (63), Expect = 6.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ E E+E ++ E++ E EE++E+ + + E+ + + E EEE
Sbjct: 3 QLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 28.4 bits (63), Expect = 6.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ E E+E ++ E++ E EE++E+ + + E+ + + E EEE
Sbjct: 3 QLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 28.4 bits (63), Expect = 6.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ E E+E ++ E++ E EE++E+ + + E+ + + E EEE
Sbjct: 3 QLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 28.4 bits (63), Expect = 6.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ E E+E ++ E++ E EE++E+ + + E+ + + E EEE
Sbjct: 3 QLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 28.4 bits (63), Expect = 6.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ E E+E ++ E++ E EE++E+ + + E+ + + E EEE
Sbjct: 3 QLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 31.4 bits (71), Expect = 1.7
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
Y E + E E++ +E+ + + E+ E E+ ++ + E EE E E+ ++ +
Sbjct: 358 YVTPKEAQAEIEQKLAQEKAQLDAAVEKGELTPEQAKQIARAKLEPEERERLEKIDKAQA 417
Query: 400 ELENEG 405
L+
Sbjct: 418 ALKQAQ 423
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 30.6 bits (69), Expect = 1.7
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
L E E+ +E + E E E+ E+E + E ++ + E ++E EEK
Sbjct: 90 QLVRETYEKLKEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKL 147
Score = 28.7 bits (64), Expect = 7.7
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ G + + E E+ +E + E E E+ E+E + E ++ + E +
Sbjct: 80 NHLKGETKAGQLVRETYEKLKEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMD 139
Query: 399 KELENE 404
KEL E
Sbjct: 140 KELLEE 145
Score = 28.3 bits (63), Expect = 8.9
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E E E+ E+E + E ++ + E ++E EE+ + E + E EE +LE
Sbjct: 106 AVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGEPLEEVIDKLE 165
Query: 403 NE 404
Sbjct: 166 YP 167
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 345 EEEEEEEEEEEEEEEEEEEE 364
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 346 EEEEEEEEEEEEEEEEEEEE 365
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 347 EEEEEEEEEEEEEEEEEEEE 366
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 348 EEEEEEEEEEEEEEEEEEEE 367
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 349 EEEEEEEEEEEEEEEEEEEE 368
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 350 EEEEEEEEEEEEEEEEEEEE 369
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 351 EEEEEEEEEEEEEEEEEEEE 370
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 352 EEEEEEEEEEEEEEEEEEEE 371
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 353 EEEEEEEEEEEEEEEEEEEE 372
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 354 EEEEEEEEEEEEEEEEEEEE 373
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 355 EEEEEEEEEEEEEEEEEEEE 374
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 356 EEEEEEEEEEEEEEEEEEEE 375
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 357 EEEEEEEEEEEEEEEEEEEE 376
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 358 EEEEEEEEEEEEEEEEEEEE 377
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 359 EEEEEEEEEEEEEEEEEEEE 378
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 360 EEEEEEEEEEEEEEEEEEEE 379
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 361 EEEEEEEEEEEEEEEEEEEE 380
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 362 EEEEEEEEEEEEEEEEEEEE 381
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 363 EEEEEEEEEEEEEEEEEEEE 382
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 364 EEEEEEEEEEEEEEEEEEEE 383
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 365 EEEEEEEEEEEEEEEEEEEE 384
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 366 EEEEEEEEEEEEEEEEEEEE 385
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 367 EEEEEEEEEEEEEEEEEEEE 386
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 368 EEEEEEEEEEEEEEEEEEEE 387
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 369 EEEEEEEEEEEEEEEEEEEE 388
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 370 EEEEEEEEEEEEEEEEEEEE 389
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 371 EEEEEEEEEEEEEEEEEEEE 390
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 372 EEEEEEEEEEEEEEEEEEEE 391
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 373 EEEEEEEEEEEEEEEEEEEE 392
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 374 EEEEEEEEEEEEEEEEEEEE 393
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 375 EEEEEEEEEEEEEEEEEEEE 394
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 376 EEEEEEEEEEEEEEEEEEEE 395
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 377 EEEEEEEEEEEEEEEEEEEE 396
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 378 EEEEEEEEEEEEEEEEEEEE 397
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 379 EEEEEEEEEEEEEEEEEEEE 398
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional.
Length = 198
Score = 30.9 bits (70), Expect = 1.7
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEE 398
G E +E E E++ E EE ++E E+ +EE + E + E + + + E E++
Sbjct: 2 EGAELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQ 61
Query: 399 KELEN---EGHCDFVKLREMLIRTNMEDMREK 427
+ + N E + ++E LI +E +RE+
Sbjct: 62 RIIANAKLEVRRKRLAVQEELISEVLEAVRER 93
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
ribosomal structure and biogenesis].
Length = 363
Score = 31.0 bits (71), Expect = 1.7
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E E+ E ++ +E+ E+ +E EE++ E E EEE +E E + EE E+EL+
Sbjct: 46 EPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKI 101
Score = 31.0 bits (71), Expect = 2.0
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K + LE E+ E ++ +E+ E+ +E EE++ E E EEE +E E + EE EEE
Sbjct: 40 KEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEEL 99
Query: 399 KEL 401
K L
Sbjct: 100 KIL 102
Score = 29.5 bits (67), Expect = 5.4
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E E E+ E ++ +E+ E+ +E EE++ E E EEE +E E + +ELE E
Sbjct: 41 EYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEE 98
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 30.5 bits (69), Expect = 1.8
Identities = 11/60 (18%), Positives = 29/60 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E++ + E E+ + ++ ++E E+ ++ E E + E+++ EL++
Sbjct: 46 LAEKKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKD 105
Score = 29.7 bits (67), Expect = 2.9
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEE 398
E E+ E E++ + E E+ + ++ ++E E+ ++ E E
Sbjct: 34 PVGAEAEDAAAELAEKKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERL 93
Query: 399 KELENE 404
K LE +
Sbjct: 94 KALEKK 99
Score = 29.7 bits (67), Expect = 3.6
Identities = 11/59 (18%), Positives = 28/59 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ + ++ ++E E+ ++ E E + E+++ E ++ EEE E ++ E
Sbjct: 64 IADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGILRSKQAEDG 122
Score = 29.4 bits (66), Expect = 4.4
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E+ + ++ ++E E+ ++ E E + E+++ E ++ EEE+E
Sbjct: 55 SEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEERE 111
Score = 29.4 bits (66), Expect = 4.5
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E++ + E E+ + ++ ++E E+ ++ E E + E+K+ E +
Sbjct: 45 ELAEKKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELK 104
Query: 405 GHCDFVKLREMLIRTN 420
D + RE ++R+
Sbjct: 105 ---DLEEEREGILRSK 117
Score = 29.0 bits (65), Expect = 5.7
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----EEEEEEEE 397
E++ + E E+ + ++ ++E E+ ++ E E E+++ E +
Sbjct: 45 ELAEKKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELK 104
Query: 398 EKELENEG 405
+ E E EG
Sbjct: 105 DLEEEREG 112
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 31.6 bits (71), Expect = 1.8
Identities = 22/64 (34%), Positives = 26/64 (40%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
K LE EE E E E E E E E E E E E + E + + E E + E
Sbjct: 458 KRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLER 517
Query: 399 KELE 402
LE
Sbjct: 518 DRLE 521
Score = 31.2 bits (70), Expect = 1.9
Identities = 22/62 (35%), Positives = 27/62 (43%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE + E++ E E EE E E E E E E E E E E E + E + LE
Sbjct: 449 ALEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLE 508
Query: 403 NE 404
E
Sbjct: 509 RE 510
Score = 30.9 bits (69), Expect = 2.5
Identities = 20/58 (34%), Positives = 24/58 (41%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E EE E E E E E E E E E E E + E + + E E LE +
Sbjct: 461 ERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLERD 518
Score = 30.1 bits (67), Expect = 4.9
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE++ E E EE E E E E E E E E E E E + E + + E + ++
Sbjct: 455 LEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVD 513
>gnl|CDD|149439 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. This
eukaryotic domain is found at the C-terminus of 26S
proteasome regulatory subunits such as the non-ATPase
Rpn3 subunit which is essential for proteasomal
function. It occurs together with the PCI/PINT domain
(pfam01399).
Length = 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 2.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++E++EEE+ EE E ++ E E +E E +L+
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLD 67
Score = 28.1 bits (63), Expect = 2.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
Y E++EEE+ EE E ++ E E +E E + ++
Sbjct: 32 YPPDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
>gnl|CDD|223642 COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit
(sigma70/sigma32) [Transcription].
Length = 342
Score = 31.1 bits (71), Expect = 1.8
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------EEEEEEEE 395
+ E E E ++ E+E+ E E+ + + E E E
Sbjct: 25 VREAEVELAKQLEDEQLLVELGEDLTDLKLGREPSERARRPAGRLSFYIRAIEAAPLLTP 84
Query: 396 EEEKEL 401
EEEK L
Sbjct: 85 EEEKAL 90
Score = 29.2 bits (66), Expect = 7.8
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ +E E E E ++ E+E+ E ++L +
Sbjct: 8 ADAVRAYLDEIGRIPLLVREAEVELAKQLEDEQLLVELGEDLTDL 52
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 31.2 bits (70), Expect = 1.8
Identities = 13/53 (24%), Positives = 32/53 (60%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+ E E +E+E ++E+ +E+ + E E++++ +EE ++E E+ ++ H
Sbjct: 26 DWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVDRRTH 78
Score = 30.0 bits (67), Expect = 4.0
Identities = 13/55 (23%), Positives = 32/55 (58%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E E +E+E ++E+ +E+ + E E++++ +EE ++E E+ ++ E
Sbjct: 26 DWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVDRRTHTE 80
Score = 29.3 bits (65), Expect = 6.4
Identities = 13/47 (27%), Positives = 30/47 (63%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
L + E E +E+E ++E+ +E+ + E E++++ +EE ++E E+
Sbjct: 24 LVDWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
Score = 29.3 bits (65), Expect = 7.0
Identities = 13/48 (27%), Positives = 31/48 (64%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
N ++ E E +E+E ++E+ +E+ + E E++++ +EE ++E E+
Sbjct: 23 NLVDWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
Score = 28.9 bits (64), Expect = 9.1
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ E E +E+E ++E+ +E+ + E E++++ +EE ++E E+
Sbjct: 26 DWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
Score = 28.9 bits (64), Expect = 9.1
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ E E +E+E ++E+ +E+ + E E++++ +EE ++E E+
Sbjct: 26 DWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
Score = 28.9 bits (64), Expect = 9.1
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ E E +E+E ++E+ +E+ + E E++++ +EE ++E E+
Sbjct: 26 DWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 30.8 bits (70), Expect = 1.9
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+ E+ E+E EE E E +E EE E+ + + + + E ++
Sbjct: 131 FDGEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKI 188
Score = 30.8 bits (70), Expect = 2.0
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ E+ E+E EE E E +E EE E+ +L+N+
Sbjct: 132 DGEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNK 179
Score = 29.3 bits (66), Expect = 5.2
Identities = 13/66 (19%), Positives = 24/66 (36%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
F E+ + + E+ E+E EE E E +E EE E+
Sbjct: 115 ALTTGFEIGEDYARIDFDGEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLV 174
Query: 396 EEEKEL 401
+ + ++
Sbjct: 175 KLKNKV 180
Score = 29.3 bits (66), Expect = 5.3
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHC 407
+ E+ E+E EE E E +E EE E+ ++ +
Sbjct: 132 DGEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKV 180
Score = 28.9 bits (65), Expect = 7.5
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
F+G + E+E EE E E +E EE E+ + + + + E +
Sbjct: 131 FDGEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGK 187
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial ribosomes,
L7/L12 homodimers bind the extended C-terminal helix of
L10 to anchor the L7/L12 molecules to the ribosome.
Eukaryotic P1/P2 heterodimers and archaeal L12p
homodimers are believed to bind the L10 equivalent
proteins, eukaryotic P0 and archaeal L10e, in a similar
fashion. P1 and P2 (L12p, L7/L12) are the only proteins
in the ribosome to occur as multimers, always appearing
as sets of dimers. Recent data indicate that most
archaeal species contain six copies of L12p (three
homodimers), while eukaryotes have two copies each of P1
and P2 (two heterodimers). Bacteria may have four or six
copies (two or three homodimers), depending on the
species. As in bacteria, the stalk is crucial for
binding of initiation, elongation, and release factors
in eukaryotes and archaea.
Length = 105
Score = 29.5 bits (66), Expect = 1.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEE 369
E E+ EE +EEEEEEE+E+
Sbjct: 74 TAAATAEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEE 370
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEE 371
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEE 372
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEE 373
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEE 374
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEE 375
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEE 376
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEE 377
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEE 378
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEE 379
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEE 380
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEE 381
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEE 382
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEE 383
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEE 384
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEE 385
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEE 386
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEE 387
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEE 388
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEE 389
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEE 390
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEE 391
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEE 392
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEE 393
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEE 394
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEE 395
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEE 396
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 376 EEEEEEEEEEEEEEEEEEEEEE 397
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 377 EEEEEEEEEEEEEEEEEEEEEE 398
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 29.9 bits (68), Expect = 1.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E ++EEE ++E EE E E E E E +K
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKA 133
Score = 29.5 bits (67), Expect = 2.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E ++EEE ++E EE E E E E E ++ +
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 2.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
+E ++EEE ++E EE E E E E E ++
Sbjct: 99 QSRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 29.2 bits (66), Expect = 3.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+E ++EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 31.4 bits (72), Expect = 1.9
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
E+E ++ EE ++ + EEEEEEEEEE E KEL
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKEL 549
>gnl|CDD|226421 COG3906, COG3906, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 105
Score = 29.4 bits (66), Expect = 1.9
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
F +Y + EE+E+ E E +E+ E + + E +EE + EE
Sbjct: 38 EFGKEYVLLVPAGSEEDEDGEIEIFAYSFTPDEDGTEGDLQLVPIETDEEWDMIEEVFNT 97
Query: 389 EEEEEEEE 396
EEE+EE
Sbjct: 98 FMEEEDEE 105
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 31.4 bits (71), Expect = 1.9
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LE + + E E + E E E + E E + EE E++ E E E EEE +L
Sbjct: 82 LEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAAEAEEEAKLLK 141
Query: 404 EGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEE 443
KL ++ E + + K L E
Sbjct: 142 ------DKLDAESLKLQNEKEDQLKEAKESISRIKNDLSE 175
Score = 29.5 bits (66), Expect = 7.2
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E ++E E + + E E + E E E + E E + EE EK+ ENE
Sbjct: 74 ENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENE 129
>gnl|CDD|227059 COG4715, COG4715, Uncharacterized conserved protein [Function
unknown].
Length = 587
Score = 31.0 bits (70), Expect = 2.0
Identities = 25/92 (27%), Positives = 35/92 (38%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
E+EE E + E +E E +EEEE EEE E + E+E+ E L +
Sbjct: 242 LRMVEQEELAELDSFEIHDEHEFDEEEETEEEWRLFMESLKVALHEDEKGWELVLSPDEQ 301
Query: 407 CDFVKLREMLIRTNMEDMREKTHCRHYELYRK 438
D V RE+ + E E
Sbjct: 302 RDVVVDREVPALASAGLQHEAIRLCEREAEGP 333
>gnl|CDD|205495 pfam13315, DUF4085, Protein of unknown function (DUF4085). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 101 and 269 amino
acids in length.
Length = 208
Score = 30.5 bits (69), Expect = 2.0
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
KYF +E + E +EE EEE EEEE + + +EE EE +E+
Sbjct: 1 KYFTKEWYKEMQISGLLSFPESQEEWEEELREEEESGNDYLQSLKEEIEEIKED 54
Score = 29.4 bits (66), Expect = 5.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E +E + E +EE EEE EEEE + + +EE EE KE
Sbjct: 4 TKEWYKEMQISGLLSFPESQEEWEEELREEEESGNDYLQSLKEEIEEIKED 54
Score = 29.0 bits (65), Expect = 7.1
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+E +E + E +EE EEE EEEE + + +EE EE +++L
Sbjct: 4 TKEWYKEMQISGLLSFPESQEEWEEELREEEESGNDYLQSLKEEIEEIKEDL 55
>gnl|CDD|188234 TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype
I-B/HMARI. This domain is found in the C-terminal 2/3
of a family of CRISPR associated proteins of the Hmari
subtype. Except for the two sequences from halophilic
archaea this domain contains a pair of CXXC motifs
[Mobile and extrachromosomal element functions, Other].
Length = 393
Score = 30.9 bits (70), Expect = 2.1
Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 9/126 (7%)
Query: 238 ISKSELQKFKTNIMTELTSNGVHIYEFPTDDETMSDVNAAMTIFSSIPCDRSLIHTIFPP 297
+SK + + K N E +N IF P D+ + T F
Sbjct: 164 VSKEDFGELKENWFFGQVY---AFLLDNDFFEDDEFLNLLDAIFRGGPLDKDTLFTEFLK 220
Query: 298 CLR--STSPSSPPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEEEEEE 355
++ S + I+A Q + + L KY L E E E E +
Sbjct: 221 KIKDEFFGGDSINNL----IVASQNMRLLLLAREALLLLLSLDKYLELLTSEAEVEGEVK 276
Query: 356 EEEEEE 361
+ + E+
Sbjct: 277 DTKLED 282
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 31.2 bits (71), Expect = 2.2
Identities = 12/49 (24%), Positives = 16/49 (32%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
L E E E E E E E E + ++ E E E+
Sbjct: 316 RLRLQELATELEAEGEAEFESTEGETTLAPSILQSDDSESPIHETEDAP 364
Score = 29.6 bits (67), Expect = 6.1
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
L+E E E E E E E E E + ++ E E E+
Sbjct: 319 LQELATELEAEGEAEFESTEGETTLAPSILQSDDSESPIHETEDAP 364
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 31.0 bits (70), Expect = 2.2
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
GL +EE +E ++ EE + +E E+ E EEE E + E + EEEE +
Sbjct: 252 GLSDEEYDEYKKIREERGGKYSIQEYLEDRERYEEELAERQATEADFCEEEEAK 305
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 30.4 bits (69), Expect = 2.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+++ + EEE+ E+++E EE E + + K L
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKVHKSL 175
Score = 30.0 bits (68), Expect = 2.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 378 EEEEEEEEEEEEEEEEEEEEEKELEN 403
+++ + EEE+ E+++E EE E +L N
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 30.0 bits (68), Expect = 2.8
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+++ + EEE+ E+++E EE E + +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKVH 172
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEE 370
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEE 371
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEE 372
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEE 373
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEE 374
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEE 375
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEE 376
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEE 377
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEE 378
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEE 379
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEE 380
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEE 381
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEE 382
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEE 383
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEE 384
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEE 385
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEE 386
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEE 387
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEE 388
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEE 389
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEE 390
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEE 391
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEE 392
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 30.4 bits (69), Expect = 2.3
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E ++ +++EE EE +E ++ ++ E K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETK 193
Score = 30.0 bits (68), Expect = 2.6
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E ++ +++EE EE +E ++ ++ E ++K+
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.9 bits (65), Expect = 5.6
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E ++ +++EE EE +E ++ ++ E +++K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|219955 pfam08657, DASH_Spc34, DASH complex subunit Spc34. The DASH
complex is a ~10 subunit microtubule-binding complex
that is transferred to the kinetochore prior to mitosis.
In Saccharomyces cerevisiae DASH forms both rings and
spiral structures on microtubules in vitro. Components
of the DASH complex, including Dam1, Duo1, Spc34, Dad1
and Ask1, are essential and connect the centromere to
the plus end of spindle microtubules.
Length = 255
Score = 30.6 bits (69), Expect = 2.3
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEE 397
+N L E E E E E++ + E + E EE+E +E +EEEE E
Sbjct: 188 YNELSESIAELEAEIAEQKRQLEIMNISSSSPSSDTSESEEDEIDIDELIRKEEEEIREL 247
Query: 398 EKELEN 403
E++L
Sbjct: 248 ERQLRQ 253
>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus. This family contains the N
terminal region of several LUC7 protein homologues and
only contains eukaryotic proteins. LUC7 has been shown
to be a U1 snRNA associated protein with a role in
splice site recognition. The family also contains human
and mouse LUC7 like (LUC7L) proteins and human cisplatin
resistance-associated overexpressed protein (CROP).
Length = 252
Score = 30.5 bits (69), Expect = 2.3
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
LE +EE+ + + + EE E +EE E E EE + +E + +E EE + ++
Sbjct: 106 LELTQEEQTKIAADSKAEELAELDEEIGKLLAEAEALGEEGKVDEAMKLMKEVEELKAKK 165
Query: 399 KELENE 404
KELE+
Sbjct: 166 KELEDS 171
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 30.8 bits (70), Expect = 2.3
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 152 LQENNVKLKEDSFKSIVDYIDNQFEAYLQEELKIKRSLNTYHDNRIHVC 200
L +N ++ F ++ D +D+ + L L + N VC
Sbjct: 85 LYKNCTTKSKNKFLTLDDILDSLYSH-LSRLLNWENPRNLLEKRLKAVC 132
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific phytosulfokine
precursor proteins. Phytosulfokines, are active as
either a pentapeptide or a C-terminally truncated
tetrapeptide. These compounds were first isolated
because of their ability to stimulate cell division in
somatic embryo cultures of Asparagus officinalis.
Length = 74
Score = 28.5 bits (64), Expect = 2.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 373
G E + E E + +E+E E E E EEE
Sbjct: 21 DTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
E + E E + +E+E E E E EEE
Sbjct: 21 DTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 379
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 380
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 29.1 bits (66), Expect = 2.4
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEE--------------EEEEEEEEEEEEEEEEEEE 384
+Y ++ EEEE+EE +E E +E+ EE E + +E+E+++++
Sbjct: 25 EYMEEFDKREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKK 84
Query: 385 EEE 387
++E
Sbjct: 85 KKE 87
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 30.8 bits (70), Expect = 2.4
Identities = 5/51 (9%), Positives = 15/51 (29%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
+ + + ++ + E + E E ++ + KE
Sbjct: 146 VSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKE 196
>gnl|CDD|222800 PHA00458, PHA00458, single-stranded DNA-binding protein.
Length = 233
Score = 30.5 bits (69), Expect = 2.4
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
F G E++ +E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 184 FGGGGEDDWADEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.0 bits (65), Expect = 7.0
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.0 bits (65), Expect = 7.0
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.0 bits (65), Expect = 7.0
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.0 bits (65), Expect = 7.0
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.0 bits (65), Expect = 7.0
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.0 bits (65), Expect = 7.0
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.0 bits (65), Expect = 7.0
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.0 bits (65), Expect = 7.0
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.0 bits (65), Expect = 7.0
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 283
Score = 30.6 bits (69), Expect = 2.4
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++ EEEE+EE ++ +++ EE E ++ E +EE K L
Sbjct: 150 NDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEEIKNLA 201
Score = 30.2 bits (68), Expect = 3.0
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
K+ ++ EEEE+EE ++ +++ EE E ++ E +EE
Sbjct: 143 KFLRNKNNDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEE 196
Score = 30.2 bits (68), Expect = 3.1
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++ EEEE+EE ++ +++ EE E ++ E ++E++N
Sbjct: 150 NDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEEIKN 199
Score = 29.8 bits (67), Expect = 4.4
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
L + ++ EEEE+EE ++ +++ EE E ++ E +EE
Sbjct: 145 LRNKNNDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEE 196
Score = 29.4 bits (66), Expect = 5.3
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ + ++ EEEE+EE ++ +++ EE E ++ E +EE
Sbjct: 142 AKFLRNKNNDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEE 196
Score = 29.4 bits (66), Expect = 6.2
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++ EEEE+EE ++ +++ EE E ++ E +EE +
Sbjct: 150 NDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEEIKN 199
>gnl|CDD|191022 pfam04538, BEX, Brain expressed X-linked like family. This is a
family of transcription elongation factors which
includes those referred to as Bex proteins as well as
those named TCEAL7. Bex1 was shown to be a novel link
between neurotrophin signalling, the cell cycle, and
neuronal differentiation, suggesting it might function
by coordinating internal cellular states with the
ability of cells to respond to external signals. TCEAL7
has been shown negatively to regulate the NF-kappaB
pathway, hence being important in ovarian cancer as it
one of the genes frequently downregulated in this
cancer. A closely related protein, TFIIS/TCEA, found in
pfam07500 is involved in transcription elongation and
transcript fidelity. TFIIS/TCEA promotes 3'
endoribonuclease activity of RNA polymerase II (pol II)
and allows pol II to bypass transcript pause or 'arrest'
during elongation process. It is thus possible that BEX
is also acting in this way.
Length = 97
Score = 28.9 bits (65), Expect = 2.5
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDM 424
E+ +E E + E E +EEEE+ EE E ++ E R L R+ + +
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG------------NFRRRLRRS-LPNF 48
Query: 425 REKTHCRHYE 434
RE RH
Sbjct: 49 REDIPNRHLS 58
Score = 27.7 bits (62), Expect = 6.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
+E+ +E E + E E +EEEE+ EE E ++ E
Sbjct: 1 MEKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 30.1 bits (68), Expect = 2.5
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 342 NGLEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
L E + +++ E+ ++E E + E+ ++ + + ++ E
Sbjct: 23 QSLAELKLRLDKDALLAGLEDALALVQKEAALEALQRAEQRLQQAAKAKRAKDAAANAAE 82
Query: 397 EEKELENEGHCDFVK 411
+ LE VK
Sbjct: 83 GKAFLEKNAKEKGVK 97
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 30.6 bits (69), Expect = 2.5
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
G++E E E E + E ++ ++ +EE E E+EEEEEE EE
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYEE 447
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 31.0 bits (70), Expect = 2.8
Identities = 17/79 (21%), Positives = 45/79 (56%), Gaps = 10/79 (12%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--------- 392
+ E E E++ EEE E ++++EE+ +E+E ++ + ++E + + + ++
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 393 -EEEEEEKELENEGHCDFV 410
E++ ++++E+E DF+
Sbjct: 62 SEKKSRKRDVEDENPEDFI 80
Score = 30.3 bits (68), Expect = 4.5
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLRE 414
E E E++ EEE E ++++EE+ +E+E ++ + ++E + + + + + K E
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSE 63
>gnl|CDD|213756 TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor,
Bacteroides expansion family 1. This group of sigma
factors are members of the sigma-70 family (TIGR02937)
and are found primarily in the genus Bacteroides. This
family appears to have resulted from a lineage-specific
expansion as B. thetaiotaomicron VPI-5482, Bacteroides
forsythus ATCC 43037, Bacteroides fragilis YCH46 and
Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23
members, respectively. There are currentlyonly two known
members of this family outside of the Bacteroides, in
Rhodopseudomonas and Bradyrhizobium.
Length = 161
Score = 29.8 bits (68), Expect = 2.8
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCR 431
EE+ +EE E EE E E + EEE E KELE +I +E + E+ CR
Sbjct: 74 EEKYQEELAEIEERELSEADPEEELEAKELEE------------IIEEAIEKLPEQ--CR 119
Query: 432 HYELYRKKRLEEESN 446
E++ R E SN
Sbjct: 120 --EIFILSRFEGLSN 132
>gnl|CDD|184859 PRK14857, tatA, twin arginine translocase protein A; Provisional.
Length = 90
Score = 28.5 bits (64), Expect = 2.8
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
K G +E +E E E + E E E+E + E E + E +E+ + E E
Sbjct: 36 KTLKGFQEASKEFENEIKREMAEPEQEVKAPAELESNQTNEANQEQVDAENSPE 89
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 29.5 bits (67), Expect = 2.8
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
L E E + E EE+E++ + E E + EE + ++ +++EE +
Sbjct: 75 LNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 29.1 bits (66), Expect = 3.6
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E + E EE+E++ + E E + EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 27.9 bits (63), Expect = 9.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E E + E EE+E++ + E E + EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 27.9 bits (63), Expect = 9.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E E + E EE+E++ + E E + EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 27.9 bits (63), Expect = 9.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E E + E EE+E++ + E E + EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 27.9 bits (63), Expect = 9.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E E + E EE+E++ + E E + EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 27.9 bits (63), Expect = 9.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E E + E EE+E++ + E E + EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 27.9 bits (63), Expect = 9.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E E + E EE+E++ + E E + EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 27.9 bits (63), Expect = 9.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E E + E EE+E++ + E E + EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 27.9 bits (63), Expect = 9.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E E + E EE+E++ + E E + EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
>gnl|CDD|220063 pfam08895, DUF1840, Domain of unknown function (DUF1840). This
family of proteins are functionally uncharacterized.
Length = 105
Score = 28.7 bits (65), Expect = 2.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 374
LE EE E+E+++E+EE+EE
Sbjct: 49 LEAAIAAEEARRAPPAEDEDDDEDEEDEEPA 79
>gnl|CDD|133433 cd05297, GH4_alpha_glucosidase_galactosidase, Glycoside Hydrolases
Family 4; Alpha-glucosidases and alpha-galactosidases.
Glucosidases cleave glycosidic bonds to release glucose
from oligosaccharides. Alpha-glucosidases and
alpha-galactosidases release alpha-D-glucose and
alpha-D-galactose, respectively, via the hydrolysis of
alpha-glycopyranoside bonds. Some bacteria
simultaneously translocate and phosphorylate
disaccharides via the phosphoenolpyruvate-dependent
phosphotransferase system (PEP-PTS). After
translocation, these phospho-disaccharides may be
hydrolyzed by the GH4 glycoside hydrolases such as the
alpha-glucosidases. Other organsisms (such as archaea
and Thermotoga maritima) lack the PEP-PTS system, but
have several enzymes normally associated with the
PEP-PTS operon. Alpha-glucosidases and
alpha-galactosidases are part of the NAD(P)-binding
Rossmann fold superfamily, which includes a wide variety
of protein families including the NAD(P)-binding domains
of alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 423
Score = 30.6 bits (70), Expect = 2.8
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
++ ++ E E+E +EE+ E EE + E ++EE + + E
Sbjct: 257 HYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSGEY 312
>gnl|CDD|224881 COG1970, MscL, Large-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 130
Score = 29.2 bits (66), Expect = 2.8
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEEEEEEEEEE 365
F K N L + E+EE E EE
Sbjct: 88 FLVVKAINKLRRKLEKEEPEAPAPAPPAEEV 118
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 30.6 bits (70), Expect = 2.9
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
LE+EE + EE + ++ EEEE EEEEEEE E + E++
Sbjct: 490 LEKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 30.6 bits (70), Expect = 3.0
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+EE + EE + ++ EEEE EEEEEEE E + EK+
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.9 bits (68), Expect = 5.0
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+EE + EE + ++ EEEE EEEEEEE E + E +
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.9 bits (68), Expect = 5.6
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E+EE + EE + ++ EEEE EEEEEEE E + E++
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.9 bits (68), Expect = 5.6
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E+EE + EE + ++ EEEE EEEEEEE E + E++
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.9 bits (68), Expect = 5.6
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E+EE + EE + ++ EEEE EEEEEEE E + E++
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.9 bits (68), Expect = 5.6
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E+EE + EE + ++ EEEE EEEEEEE E + E++
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.9 bits (68), Expect = 5.6
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E+EE + EE + ++ EEEE EEEEEEE E + E++
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.9 bits (68), Expect = 5.6
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E+EE + EE + ++ EEEE EEEEEEE E + E++
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.9 bits (68), Expect = 5.6
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E+EE + EE + ++ EEEE EEEEEEE E + E++
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.9 bits (68), Expect = 5.6
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E+EE + EE + ++ EEEE EEEEEEE E + E++
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.9 bits (68), Expect = 5.6
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E+EE + EE + ++ EEEE EEEEEEE E + E++
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.5 bits (67), Expect = 6.8
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+EE + EE + ++ EEEE EEEEEEE E + E+
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
Score = 29.1 bits (66), Expect = 8.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
EE + EE + ++ EEEE EEEEEEE E + E++
Sbjct: 491 EKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEKD 535
>gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit,
Firmicutes type. AddAB, also called RexAB, substitutes
for RecBCD in several bacterial lineages. These DNA
recombination proteins act before synapse and are
particularly important for DNA repair of double-stranded
breaks by homologous recombination. The term AddAB is
used broadly, with AddA homologous between the
Firmicutes (as modeled here) and the
alphaproteobacteria, while the partner AddB proteins
show no strong homology across the two groups of species
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1230
Score = 30.8 bits (70), Expect = 2.9
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEG 405
E + + EE E+ EE EEEE +EE E ++ ++E E K L EG
Sbjct: 507 PENPDNKTEELLYEKLLIEEAEEEEIDEEAEILDKAQQEATMVAERIKALIKEG 560
>gnl|CDD|217573 pfam03462, PCRF, PCRF domain. This domain is found in peptide
chain release factors.
Length = 115
Score = 29.0 bits (66), Expect = 2.9
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E EEE++ E EE EEE EE E+E EE EKEL N
Sbjct: 1 ELLEEEDDPELREEAEEELEELEKELEELEKELLN 35
Score = 28.3 bits (64), Expect = 5.2
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EEE++ E EE EEE EE E+E +ELE E
Sbjct: 1 ELLEEEDDPELREEAEEELEELEKELEELEKE 32
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 30.5 bits (69), Expect = 3.0
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 18/81 (22%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------------EEEEE 380
K + L + E +E+E +E++E++E E+ +++++E +EE +
Sbjct: 269 KKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERK 328
Query: 381 EEEEEEEEEEEEEEEEEEKEL 401
E+ + +EE+E E+E E+EL
Sbjct: 329 EQLAKLRKEEKEREKEYEQEL 349
>gnl|CDD|223965 COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75
kD subunit (chain G) [Energy production and conversion].
Length = 693
Score = 30.8 bits (70), Expect = 3.0
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 19/80 (23%)
Query: 431 RHYELYRKKRLEEESNVIGSNFRWSDFSAKTRFGWDYL-------PYINTGKRLPKIILH 483
R+ E+ R E N W K RF +D L P I G RL +
Sbjct: 236 RYGEVRRILPRYNEV----VNEEW--LCDKGRFAYDGLNLQRLDRPKIRVGGRLVEA--- 286
Query: 484 LSGSTLEAGSLVYTGGSAHR 503
S LEA + + +
Sbjct: 287 ---SWLEANEAIAQALALIK 303
>gnl|CDD|223173 COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism].
Length = 248
Score = 30.0 bits (68), Expect = 3.0
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ LEE + EE E E + E EE E EE E E+ EE+ E
Sbjct: 186 ERVANLEELLKISVEEFLEALLEAFFKVLGVELEEYELTPEELELAEKLAEEKYSSWE 243
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein)
[Intracellular trafficking and secretion].
Length = 211
Score = 30.0 bits (67), Expect = 3.1
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+G EE++ ++ E E +E + E E E + + EE+E
Sbjct: 35 DGKAGGEEKKVQQSPFLENAVPEGDEGKGPESPNIHFEPVVELQRVHLKTNEEDET 90
Score = 30.0 bits (67), Expect = 3.4
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
F + EE++ ++ E E +E + E E E + + EE+E
Sbjct: 33 FGDGKAGGEEKKVQQSPFLENAVPEGDEGKGPESPNIHFEPVVELQRVHLKTNEEDET 90
>gnl|CDD|165339 PHA03046, PHA03046, Hypothetical protein; Provisional.
Length = 142
Score = 29.3 bits (66), Expect = 3.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+++EE + E E+ EE+ ++ + EEEE E K++ NE
Sbjct: 11 DDDEENDRNEHREKTSEEDGHYKKRLDVEEEEPNLINIRNEIKKIINE 58
>gnl|CDD|220634 pfam10220, DUF2146, Uncharacterized conserved protein (DUF2146).
This is a family of proteins conserved from plants to
humans. In Dictyostelium it is annotated as Mss11p but
this could not be confirmed. Mss11p is required for the
activation of pseudo-hyphal and invasive growth by
Ste12p in yeast.
Length = 890
Score = 30.6 bits (69), Expect = 3.2
Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 2/151 (1%)
Query: 275 NAAMTIFSSIPCDRSLIHTIFPPCLRSTSPSSPPH--FHSLNILAMQKVPGSNPTIDKNL 332
N+ + SS C R H P ++ + H F L + P P+
Sbjct: 488 NSGVIHVSSCNCGRKQGHREDPFTIKQANYDFYQHIAFKCCVKLWRYQFPIFQPSSSDIR 547
Query: 333 YSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ F+ + ++ E+ E+E +EE ++E+ E E + + + +
Sbjct: 548 AADFENNSLSAAKKMEQAEDELADEETDQEQPESLEPQLQGSSTSPSDASDLNFSTASSS 607
Query: 393 EEEEEEKELENEGHCDFVKLREMLIRTNMED 423
E EE + E +T E
Sbjct: 608 EASSEESDNYARPTSRSGTDEEEASKTAREK 638
>gnl|CDD|225029 COG2118, COG2118, DNA-binding protein [General function prediction
only].
Length = 116
Score = 28.9 bits (65), Expect = 3.2
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
++EE EE + E + + + EE+ E +EE+ +EEE +K+
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEAQKQ 43
>gnl|CDD|220245 pfam09444, MRC1, MRC1-like domain. This putative domain is found
to be the most conserved region in mediator of
replication checkpoint protein 1.
Length = 145
Score = 29.3 bits (66), Expect = 3.3
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 7/66 (10%)
Query: 344 LEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
LE E EE E+E ++E+ +++++ E EE ++E +E+ E +E + EEE E+
Sbjct: 10 LEGEAEESEDEWAGLGGADDEDSDDDDDSELEEMIDDEYSKEKAENDELAAKRAEEERED 69
Query: 397 EEKELE 402
+EKE+E
Sbjct: 70 DEKEVE 75
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 30.7 bits (69), Expect = 3.3
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L E+ E + + +E + E+E E++E + E E + E +EN
Sbjct: 427 LRLTLWEKNLGSAENQLNSLKSGLQETLCDGEKEVEQDEGQCRTELEGSFNKSAESRIEN 486
Query: 404 E 404
E
Sbjct: 487 E 487
Score = 30.3 bits (68), Expect = 4.6
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
K E + + +E + E+E E++E + E E + E E E E
Sbjct: 434 KNLGSAENQLNSLKSGLQETLCDGEKEVEQDEGQCRTELEGSFNKSAESRIENEVE 489
>gnl|CDD|198151 smart01083, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved region
at the N-terminal end of a family of proteins referred
to as CIRs (CBF1-interacting co-repressors). CBF1
(centromere-binding factor 1) acts as a transcription
factor that causes repression by binding specifically to
GTGGGAA motifs in responsive promoters, and it requires
CIR as a co-repressor. CIR binds to histone deacetylase
and to SAP30 and serves as a linker between CBF1 and the
histone deacetylase complex.
Length = 37
Score = 26.7 bits (60), Expect = 3.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 381 EEEEEEEEEEEEEEEEEEKELENE 404
+ E++ EEE+++ EE KE+E E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 4.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 377 EEEEEEEEEEEEEEEEEEEEEEKE 400
+ E++ EEE+++ EE +E EKE
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEE 368
+ + E++ EEE+++ EE +E E+E
Sbjct: 13 VWKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEE 369
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEE 370
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEE 371
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEE 372
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEE 373
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEE 374
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEE 375
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEE 376
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEE 377
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEE 378
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEE 379
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEE 380
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEE 381
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEE 382
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEE 383
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEE 384
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEE 385
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEE 386
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEE 387
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEE 388
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEE 389
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEE 390
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEE 391
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEE 392
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEE 393
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEE 394
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEEEE 395
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEEEE 396
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEE 397
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEEEE 398
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
>gnl|CDD|184235 PRK13678, PRK13678, hypothetical protein; Provisional.
Length = 95
Score = 28.4 bits (64), Expect = 3.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE+E++E E + E+E+ +E + + E +EE + EE L+ E
Sbjct: 43 PAGEEEDEDDEIEIQAFSFTEDEDGDEGDLQPIETDEEWDMIEEVLNTFLDEE 95
Score = 27.2 bits (61), Expect = 9.0
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
L EEE+E++E E + E+E+ +E + + E +EE + EE +EE
Sbjct: 41 LSPAGEEEDEDDEIEIQAFSFTEDEDGDEGDLQPIETDEEWDMIEEVLNTFLDEE 95
>gnl|CDD|221165 pfam11680, DUF3276, Protein of unknown function (DUF3276). This
bacterial family of proteins has no known function.
Length = 123
Score = 28.8 bits (65), Expect = 3.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
K+ GL E + ++E+ EE E ++ E++E EE E E+ + + E
Sbjct: 69 KFMEGLLEAIDYIKKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEI 117
Score = 28.4 bits (64), Expect = 4.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
++E+ EE E ++ E++E EE E E+ + + E
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEIF 118
Score = 27.7 bits (62), Expect = 9.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
++E+ EE E ++ E++E EE E E+ + + E +++
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEIFTDID 122
>gnl|CDD|201540 pfam00992, Troponin, Troponin. Troponin (Tn) contains three
subunits, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). this Pfam contains members of
the TnT subunit. Troponin is a complex of three
proteins, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). The troponin complex
regulates Ca++ induced muscle contraction. This family
includes troponin T and troponin I. Troponin I binds to
actin and troponin T binds to tropomyosin.
Length = 131
Score = 29.1 bits (66), Expect = 3.5
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 344 LEEEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EE E E+ ++EEE+E+ E E +E ++ + +EE + EE+
Sbjct: 13 AEELEFEQRKKEEEKEKYLAERCPPLRLSLSRAELQELCKKLHARIDRLDEERYDIEEKV 72
Query: 395 EEEEKELE 402
+++KE+E
Sbjct: 73 AKKDKEIE 80
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 30.6 bits (69), Expect = 3.5
Identities = 10/30 (33%), Positives = 23/30 (76%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEE 367
F E+++ +E+E+++E+E+E+E+E+E
Sbjct: 881 ISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.4 bits (66), Expect = 6.8
Identities = 14/44 (31%), Positives = 31/44 (70%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
F L + + EE + +E E+++ +E+E+++E+E+E+E+E+E
Sbjct: 867 FKELNDLTDLEEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 30.5 bits (69), Expect = 3.5
Identities = 13/60 (21%), Positives = 20/60 (33%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
L E + +E E E E +E E ++ + E E + EE E
Sbjct: 336 VLGEIDADELEAAFEGGSEVTTDEGESASASLADKPKLGELEAFDRIARARGEESSSERA 395
>gnl|CDD|147374 pfam05160, DSS1_SEM1, DSS1/SEM1 family. This family contains the
breast cancer tumour suppressor BRCA2-interacting
protein DSS1 and its homologue SEM1, both of which are
short acidic proteins. DSS1 has been shown to be a
conserved component of the Rae1 mediated mRNA export
pathway in Schizosaccharomyces pombe.
Length = 63
Score = 27.6 bits (62), Expect = 3.5
Identities = 17/59 (28%), Positives = 38/59 (64%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+++E+ +++ EE++E E+ E+ EEE E+E EE+ ++++ E++ K+L+ E
Sbjct: 1 QKKEQVKKKLLEEDDEFEDFPVEDWPEEETEKENGNNLWEEDWDDDDVEDDFSKQLKEE 59
Score = 26.9 bits (60), Expect = 6.4
Identities = 17/59 (28%), Positives = 37/59 (62%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+ +++ EE++E E+ E+ EEE E+E EE+ ++++ E++ ++ ++ELE
Sbjct: 4 EQVKKKLLEEDDEFEDFPVEDWPEEETEKENGNNLWEEDWDDDDVEDDFSKQLKEELEK 62
Score = 26.5 bits (59), Expect = 9.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 374
LEE++E E+ E+ EEE E+E EE
Sbjct: 11 LEEDDEFEDFPVEDWPEEETEKENGNNLWEE 41
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 30.5 bits (70), Expect = 3.6
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
E+++ E E +E + EE E + DF K+
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAETISFD-----DFAKV 576
Score = 30.5 bits (70), Expect = 3.7
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
F +E+++ E E +E + EE E
Sbjct: 527 FTRIEDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 30.4 bits (69), Expect = 3.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEE 367
L E +E E EE E EE +EE E+
Sbjct: 239 LAEADEAEPEEAETEEAQEEAAEK 262
Score = 30.0 bits (68), Expect = 4.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 378 EEEEEEEEEEEEEEEEEEEEEK 399
E +E E EE E EE +EE EK
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 30.0 bits (68), Expect = 4.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 377 EEEEEEEEEEEEEEEEEEEEEEK 399
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKP 263
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEE 368
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEE 369
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEE 370
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEE 371
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEE 372
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEE 373
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEE 374
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEE 375
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEE 376
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEE 377
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEE 378
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEE 379
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEE 380
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEE 381
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEE 382
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEE 383
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEE 384
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEE 385
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEE 386
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEE 387
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEE 388
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEE 389
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEE 390
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEE 391
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEE 392
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 372 EEEEEEEEEEEEEEEEEEEEEE 393
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 373 EEEEEEEEEEEEEEEEEEEEEE 394
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEE 395
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 375 EEEEEEEEEEEEEEEEEEEEEE 396
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 376 EEEEEEEEEEEEEEEEEEEEEE 397
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense
mechanisms].
Length = 733
Score = 30.5 bits (69), Expect = 3.7
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 327 TIDKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
T+ L G E E + +E+E + +E + E+ +EE E EE +
Sbjct: 379 TLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVK 438
Query: 387 EE 388
E
Sbjct: 439 EG 440
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required
for growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 28.0 bits (63), Expect = 3.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
LEE EE++ ++EEE+E +E + E E +
Sbjct: 48 LEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 27.6 bits (62), Expect = 5.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
EE EE EE++ ++EEE+E +E + E E ++
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 26.8 bits (60), Expect = 8.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE EE EE++ ++EEE+E +E + E E ++
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional.
Length = 159
Score = 29.2 bits (66), Expect = 3.7
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
FFD K ++ + E + + E+ +E++++ E + + E E + +EE ++ EE + +
Sbjct: 26 FFD-KIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKA 84
Query: 395 EEEEKELENEGHCDFVKLREMLIRTNMEDMREK 427
E +E+ E H + ++ R +E REK
Sbjct: 85 ENVYEEIVKEAH---EEADLIIERAKLEAQREK 114
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 30.4 bits (68), Expect = 3.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
NG+ + E+ E ++ E+ +EE E E E E E ++ EE
Sbjct: 544 NGIAKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
Score = 29.7 bits (66), Expect = 7.3
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNM 421
+ E+ E ++ E+ +EE E E E E E+ ++G + L++ + R +M
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEEIYSLLKKTINRIDM 605
>gnl|CDD|148072 pfam06244, DUF1014, Protein of unknown function (DUF1014). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 28.9 bits (65), Expect = 3.9
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+EE E+E+ + E EE+ ++ E EE EE E
Sbjct: 5 IEERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
Score = 28.6 bits (64), Expect = 4.5
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
EE E+E+ + E EE+ ++ E EE EE E + +++
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVEARTIDD 56
Score = 28.2 bits (63), Expect = 6.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
EE E+E+ + E EE+ ++ E EE EE E
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
Score = 28.2 bits (63), Expect = 6.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
EE E+E+ + E EE+ ++ E EE EE E
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
Score = 28.2 bits (63), Expect = 6.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
EE E+E+ + E EE+ ++ E EE EE E
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
Score = 28.2 bits (63), Expect = 6.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
EE E+E+ + E EE+ ++ E EE EE E
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
Score = 28.2 bits (63), Expect = 6.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
EE E+E+ + E EE+ ++ E EE EE E
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
Score = 28.2 bits (63), Expect = 6.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
EE E+E+ + E EE+ ++ E EE EE E
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
Score = 28.2 bits (63), Expect = 6.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
EE E+E+ + E EE+ ++ E EE EE E
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
>gnl|CDD|217284 pfam02915, Rubrerythrin, Rubrerythrin. This domain has a
ferritin-like fold.
Length = 137
Score = 28.9 bits (65), Expect = 3.9
Identities = 27/109 (24%), Positives = 35/109 (32%), Gaps = 20/109 (18%)
Query: 330 KNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
L + +E E +E E +E E EE+E E
Sbjct: 47 GFLNKLLKDLFLGLELGILKEHVEYTFFPVADELTRENLKEAIEGAMLEEKEAYPFYIEI 106
Query: 390 EEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRK 438
E+E EEE + L F L E EK RH E +RK
Sbjct: 107 AEKEGEEEARRL-------FEDLAEA----------EK---RHEERFRK 135
>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b. This model
describes the F1/F0 ATP synthase b subunit in bacteria
only. Scoring just below the trusted cutoff are the
N-terminal domains of Mycobacterial b/delta fusion
proteins and a subunit from an archaeon, Methanosarcina
barkeri, in which the ATP synthase homolog differs in
architecture and is not experimentally confirmed. This
model helps resolve b from the related b' subunit.
Within the family is an example from a
sodium-translocating rather than proton-translocating
ATP synthase [Energy metabolism, ATP-proton motive force
interconversion].
Length = 147
Score = 28.9 bits (65), Expect = 4.0
Identities = 15/73 (20%), Positives = 35/73 (47%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
+GL E ++E +++ + +E ++E +E E + E EE + E EE +++
Sbjct: 33 DGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKI 92
Query: 402 ENEGHCDFVKLRE 414
+ + + +E
Sbjct: 93 KAQARAEIEAEKE 105
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 30.1 bits (68), Expect = 4.0
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L ++E E +E E+ E++E+ E+ + + + E + E++ +E +++ EE+KE
Sbjct: 502 LPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIE 561
Query: 404 EGHCDFVKLREMLIRTNMEDMREKT 428
KLR+ L N E ++
Sbjct: 562 NL---IKKLRQALQNDNYESIKSLL 583
>gnl|CDD|182033 PRK09697, PRK09697, protein secretion protein GspB; Provisional.
Length = 139
Score = 28.9 bits (64), Expect = 4.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E EEE+E E E+EE EE +E+ E K NE
Sbjct: 91 ESVEEEDEPGVAVENAPSSSEDEENTVEESDEKAGLRERVKNALNE 136
Score = 28.5 bits (63), Expect = 5.2
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E EEE+E E E+EE EE +E+ E + ELE
Sbjct: 91 ESVEEEDEPGVAVENAPSSSEDEENTVEESDEKAGLRERVKNALNELE 138
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 30.2 bits (69), Expect = 4.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E EE E EE+ + E + + E E E+ E E E + ELE
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELE 46
Score = 29.0 bits (66), Expect = 9.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E EE E EE+ + E + + E E E+ E E + L++E
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSE 44
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 30.0 bits (67), Expect = 4.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
LEE E +E++ + E EE+ + E +EE ++E+ E EE EEK + +
Sbjct: 97 LEEAESVFKEKQMLSADVSEIEEQSNDSLSENDEEPSMDDEKTSAEAAREEFAEEKRIPD 156
Score = 29.7 bits (66), Expect = 6.5
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 335 FFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---------------E 379
FFD + FN E+ E E E+E+ + ++ ++EEEE +
Sbjct: 164 FFDLEKFNRDTLAAEDSNEASEGSEDEDIDYFQDMPSDDEEEEAIYYEDFFDKPTKEPVK 223
Query: 380 EEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHCRHYE 434
+ + ++ +E+EE +EEE ++ D E + +E
Sbjct: 224 KHSDVKDPKEDEELDEEEHDSAMDKVKLDLFADEEDEPNAEGVGEASDKNLSSFE 278
>gnl|CDD|224849 COG1938, COG1938, Archaeal enzymes of ATP-grasp superfamily
[General function prediction only].
Length = 244
Score = 29.6 bits (67), Expect = 4.2
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 375
LE+E EE EE+ E+ E+ E+EEE E EEE
Sbjct: 209 LEKEAEEIEEQLEKLAEQLEKEEERVEREEEP 240
Score = 28.8 bits (65), Expect = 7.8
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
GL + ++ E+E EE EE+ E+ E+ E+EEE E EEE
Sbjct: 201 GLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVEREEEP 240
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 29.9 bits (68), Expect = 4.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+ + E EEE+E + EEE++E + E KE+ +
Sbjct: 482 GDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGD 517
Score = 29.9 bits (68), Expect = 5.5
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 336 FDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
F+ K F + + + + E EEE+E + EEE++E + E +E
Sbjct: 471 FEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKE 513
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 30.0 bits (66), Expect = 4.3
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E E++ ++ E+E E E ++ +EEE ++ + E+E ++E+E++E + K+L+ E
Sbjct: 87 EAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAE 146
Query: 405 GHCDFVKLREMLIRTNMEDMREKT 428
K +E ++ + EKT
Sbjct: 147 ------KKKEKAVKAEKAEKAEKT 164
>gnl|CDD|236187 PRK08207, PRK08207, coproporphyrinogen III oxidase; Provisional.
Length = 488
Score = 29.8 bits (68), Expect = 4.4
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
L FF+ E E EEEE+ + E + EE E+ + + EE ++
Sbjct: 18 LNLFFE-------ESEIGFEEEEDADLIIEIDIEENEKVSVKLTDVITGYVFEETFAKDF 70
Query: 392 EEEEEEEKELENE 404
+E++ L+
Sbjct: 71 SAFLDEKERLKRV 83
>gnl|CDD|107059 PHA01746, PHA01746, hypothetical protein.
Length = 131
Score = 28.7 bits (64), Expect = 4.4
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 329 DKNLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
D L + F KY + L E + +EEE++ E++EE+EE+ E+ ++ EEE
Sbjct: 72 DLKLIAEFLEKYSDFLNEYVKFTPRNNNAIQEEEDDMEQQEEKEEKGREKGRKKNVEEE 130
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 30.1 bits (68), Expect = 4.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
G++E E E E + E ++ ++ EEE E +EEEE E
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYEI 445
>gnl|CDD|131353 TIGR02300, FYDLN_acid, TIGR02300 family protein. Members of this
family are bacterial proteins with a conserved motif
[KR]FYDLN, sometimes flanked by a pair of CXXC motifs,
followed by a long region of low complexity sequence in
which roughly half the residues are Asp and Glu,
including multiple runs of five or more acidic residues.
The function of members of this family is unknown.
Length = 129
Score = 28.8 bits (64), Expect = 4.6
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+E+E +E + E +E E EE +EE + ++ E+E+ +++
Sbjct: 50 DDEKEAVAVKEVDPEIDEAAELVSLEEADEEVDPGAPTPAGGDDLAEDEDIADDD 104
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking. Sec14-like
Golgi-trafficking domain The GOLD domain is always found
combined with lipid- or membrane-association domains.
Length = 136
Score = 28.9 bits (65), Expect = 4.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 370 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +EEEEEE EEEE E + E + + + L +E
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSRPLVDE 87
>gnl|CDD|220223 pfam09405, Btz, CASC3/Barentsz eIF4AIII binding. This domain is
found on CASC3 (cancer susceptibility candidate gene 3
protein) which is also known as Barentsz (Btz). CASC3 is
a component of the EJC (exon junction complex) which is
a complex that is involved in post-transcriptional
regulation of mRNA in metazoa. The complex is formed by
the association of four proteins (eIF4AIII, Barentsz,
Mago, and Y14), mRNA, and ATP. This domain wraps around
eIF4AIII and stacks against the 5' nucleotide.
Length = 116
Score = 28.6 bits (64), Expect = 4.7
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E E + E E +E++E + E E+ ++E +
Sbjct: 2 VESERQSGRTPSAEPTEPKEDKERKRREHEKYDDEDD 38
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 29.1 bits (66), Expect = 4.7
Identities = 14/66 (21%), Positives = 47/66 (71%), Gaps = 5/66 (7%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEE 398
LE+E ++ + E +++E+E ++EE++ +++ EE + +++E +++++E +++++ +
Sbjct: 40 LEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQ 99
Query: 399 KELENE 404
+EL+ +
Sbjct: 100 QELQQK 105
>gnl|CDD|234635 PRK00104, scpA, segregation and condensation protein A; Reviewed.
Length = 242
Score = 29.4 bits (67), Expect = 4.7
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 344 LEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
L + EE EEEEE+ +E E ++ +E EE +E+EEE + + + EE + E
Sbjct: 74 LPKVEEFEEEEEDPRQELLEKLIEYKKFKEAAEELKEQEEERAQYFSKPPSDLEEFDAEL 133
Query: 399 KELENEGHCDFVKL----REMLIRTNMEDMREKT 428
E E +G + L +++ R R
Sbjct: 134 DEDELDGDVTLLDLFLAFSKLMERKKANKPRHTK 167
>gnl|CDD|205150 pfam12925, APP_E2, E2 domain of amyloid precursor protein. The E2
domain is the largest of the conserved domains of the
amyloid precursor protein. The structure of E2 consists
of two coiled-coil sub-structures connected through a
continuous helix, and bears an unexpected resemblance to
the spectrin family of protein structures.E 2 can
reversibly dimerise in solution, and the dimerisation
occurs along the longest dimension of the molecule in an
antiparallel orientation, which enables the N-terminal
substructure of one monomer to pack against the
C-terminal substructure of a second monomer. The high
degree of conservation of residues at the putative dimer
interface suggests that the E2 dimer observed in the
crystal could be physiologically relevant. Heparin
sulfate proteoglycans, the putative ligands for the
precursor present in extracellular matrix, bind to E2 at
a conserved and positively charged site near the dimer
interface.
Length = 193
Score = 29.3 bits (66), Expect = 4.8
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEE 398
LEE+ E + +E EE E + + + + + + +E E +E E+E E
Sbjct: 35 LEEKHRERMTQVMKEWEEAESQYKNLPKADPKAAQLMRKELTERFQETVQTLEQEAAAER 94
Query: 399 KELENEGH 406
++L
Sbjct: 95 QQLVETHQ 102
>gnl|CDD|219290 pfam07084, Spot_14, Thyroid hormone-inducible hepatic protein Spot
14. This family consists of several thyroid
hormone-inducible hepatic protein (Spot 14 or S14)
sequences. Mainly expressed in tissues that synthesise
triglycerides, the mRNA coding for Spot 14 has been
shown to be increased in rat liver by insulin, dietary
carbohydrates, glucose in hepatocyte culture medium, as
well as thyroid hormone. In contrast, dietary fats and
polyunsaturated fatty acids, have been shown to decrease
the amount of Spot 14 mRNA, while an elevated level of
cAMP acts as a dominant negative factor. In addition,
liver-specific factors or chromatin organisation of the
gene have been shown to contribute to the regulation of
its expression. Spot 14 protein is thought to be
required for induction of hepatic lipogenesis.
Length = 160
Score = 29.0 bits (65), Expect = 4.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+E + + E E+E++ E EE EEEE E +LE + H
Sbjct: 86 QEWQAKAAGGEMSEKEKDANESEEAEEEELGELDLEAQFH 125
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 29.8 bits (67), Expect = 4.8
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 344 LEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
L+ E +EEE + E+ EE+ + E + ++ E EE ++E+E+E+E E EK
Sbjct: 407 LKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEK 466
Query: 400 ELE 402
LE
Sbjct: 467 VLE 469
>gnl|CDD|233935 TIGR02577, cas_TM1794_Cmr2, CRISPR-associated protein Cas10/Cmr2,
subtype III-B. This model represent a Crm2 family of
the CRISPR-associated RAMP module, a set of six genes
recurring found together in prokaryotic genomes. This
gene cluster is found only in species with CRISPR
repeats, usually near the repeats themselves. Because
most of the six (but not this family) contain RAMP
domains, and because its appearance in a genome appears
to depend on other CRISPR-associated Cas genes, the set
is designated the CRISPR RAMP module. This protein,
typified by TM1794 from Thermotoga maritima, is
designated Crm2, for CRISPR RAMP Module protein 2
[Mobile and extrachromosomal element functions, Other].
Length = 483
Score = 29.7 bits (67), Expect = 4.8
Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 6/179 (3%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
++E+ E+ +E + ++E E ++ ++ E + EE K+ E
Sbjct: 89 LAILPAKDEKILEKLQETIRIKIKDELAELLKKAVKDLIEGPAVITDLEEGLKQKEEALK 148
Query: 407 CDFVKLREMLIRTNMEDMREKTHCRHYELYRKKRLEEESNVIGSNFRWSDFSAKTRFGWD 466
+ K + + +E+ + L S + S K
Sbjct: 149 KELEKYADKRLSAPSLLEKEEVYKDVKNGNVGTGLNNVSKYLSFEESVLKLSEKFLRKEL 208
Query: 467 YLPYINTGKRLPKIIL------HLSGSTLEAGSLVYTGGSAHRVAVLSAEVLRKENSDG 519
Y + L I L G G +A + ++L ++
Sbjct: 209 IRIYPKLRESLDAIGLTKRFSERCEKCLELPGIKCLLCGENLAIAGVKRKLLELKDLKA 267
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific
eukaryotic initiation factor 4B proteins.
Length = 496
Score = 30.1 bits (67), Expect = 4.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E EEE+ +EE + ++EE E + +E+ + E ++EKELE
Sbjct: 365 ETEEEKNLKEEINLLRVDLKKEEAIAPESKGSGQEQSHKGLSELIRQKEKELE 417
Score = 29.7 bits (66), Expect = 6.1
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 10/124 (8%)
Query: 292 HTIFPPCLRSTSPSSPPHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFNGLEEEEEEE 351
+ P +S+ SP S ++ P NP F D K + EE+ ++
Sbjct: 299 QSSRPSSAQSSRSESPGSQGSEG--VVKPRPKVNP--------FGDAKPREVVLEEKGKD 348
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVK 411
+ + E E + E EEE+ +EE + ++EE E + E
Sbjct: 349 WRKIDLELEHRRVDRPETEEEKNLKEEINLLRVDLKKEEAIAPESKGSGQEQSHKGLSEL 408
Query: 412 LREM 415
+R+
Sbjct: 409 IRQK 412
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 28.8 bits (65), Expect = 4.9
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E EEE+ +E EEE E E E EE +E+E+ K++E
Sbjct: 83 IESSEEEQLRRIKELEEELREVEAEREEAVKEKEKLLKKVEA 124
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 29.7 bits (67), Expect = 5.0
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
K ++ LEE + E ++ +E+ +E +E EE + E E +EE EE EE+ EE EE+
Sbjct: 40 KEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQ 97
Score = 29.3 bits (66), Expect = 7.6
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
EE + E ++ +E+ +E +E EE + E E +EE EE EE+ EE EE+ K L
Sbjct: 46 EEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVL 101
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 30.0 bits (68), Expect = 5.1
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEE 393
LE + ++ E + E EEE E E ++ EE E+ E +E E+
Sbjct: 422 LQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKA 481
Query: 394 EEEEEKELENEGH 406
+EE+E+ N
Sbjct: 482 QEEQEQAEANVEQ 494
Score = 29.7 bits (67), Expect = 7.1
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E EE++ ++ EE+ + E + ++ E + E EEE E E K+
Sbjct: 399 KNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRL 458
Query: 403 N 403
+
Sbjct: 459 D 459
>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and
catalytic domains. Phosphoglycerate dehydrogenases
(PGDHs) catalyze the initial step in the biosynthesis of
L-serine from D-3-phosphoglycerate. PGDHs come in 3
distinct structural forms, with this first group being
related to 2-hydroxy acid dehydrogenases, sharing
structural similarity to formate and glycerate
dehydrogenases. PGDH in E. coli and Mycobacterium
tuberculosis form tetramers, with subunits containing a
Rossmann-fold NAD binding domain. Formate/glycerate and
related dehydrogenases of the D-specific 2-hydroxyacid
dehydrogenase superfamily include groups such as formate
dehydrogenase, glycerate dehydrogenase, L-alanine
dehydrogenase, and S-adenosylhomocysteine hydrolase.
Despite often low sequence identity, these proteins
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann fold NAD+ binding
form. The NAD+ binding domain is inserted within the
linear sequence of the mostly N-terminal catalytic
domain, which has a similar domain structure to the
internal NAD binding domain. Structurally, these domains
are connected by extended alpha helices and create a
cleft in which NAD is bound, primarily to the C-terminal
portion of the 2nd (internal) domain. Some related
proteins have similar structural subdomain but with a
tandem arrangement of the catalytic and NAD-binding
subdomains in the linear sequence.
Length = 304
Score = 29.7 bits (68), Expect = 5.1
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 15/45 (33%)
Query: 477 LPKIIL--HLSGSTLEAGSLVYTGGSAHRVAVLSAE----VLRKE 515
LP +IL HL ST EA RVAV +AE VL E
Sbjct: 269 LPNVILTPHLGASTEEA---------QERVAVDAAEQVLAVLAGE 304
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved in
conjugation with cellular fusion (mating) and invasive
growth. A high throughput localisation study has
localised RXT2 to the nucleus.
Length = 141
Score = 28.5 bits (64), Expect = 5.2
Identities = 11/49 (22%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Query: 369 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLI 417
+E+ + ++++E++E++EE + E+++E K ++L E+L
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDENPYKL---------IRLEEILA 87
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEE 371
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEE 372
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEE 373
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEE 374
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEE 375
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEE 376
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEE 377
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEE 378
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEE 379
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEE 380
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEE 383
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEE 385
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEE 387
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEE 388
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 363 EEEEEEEEEEEEEEEEEEEEEEEEEEE 389
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 366 EEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 7.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 29.7 bits (67), Expect = 5.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
++ G EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 400 WYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E EE E E E+ + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
>gnl|CDD|225102 COG2191, COG2191, Formylmethanofuran dehydrogenase subunit E
[Energy production and conversion].
Length = 206
Score = 29.3 bits (66), Expect = 5.3
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIR 418
E E +E EE E +EE E +E + E E+ + C K E+ +
Sbjct: 127 LGPSEIETRKEHWEELEWILLMPDEELFEVKEVDVEPPEKAKKFGSVRCS--KCGELFME 184
Query: 419 TNMEDMREKTHCR 431
+ K C+
Sbjct: 185 PRAVVLNGKPVCK 197
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 28.4 bits (64), Expect = 5.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 16/63 (25%)
Query: 357 EEEEEEEEEEEEEEEEEEEE----------------EEEEEEEEEEEEEEEEEEEEEEKE 400
E EEE + E + E +E EE + EEE++E+E++++++KE
Sbjct: 31 EAREEERKRERKRLRNEPDEDGFVTVVRGGRKGPAAGEEAGKAAEEEKKEKEKKKKKKKE 90
Query: 401 LEN 403
LE+
Sbjct: 91 LED 93
>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional.
Length = 110
Score = 28.3 bits (64), Expect = 5.3
Identities = 13/40 (32%), Positives = 27/40 (67%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
EE EE + EE +++ +E+++ +EE+EE + + E +K+
Sbjct: 1 EELEEIRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQ 40
>gnl|CDD|218379 pfam05009, EBV-NA3, Epstein-Barr virus nuclear antigen 3 (EBNA-3).
This family contains EBNA-3A, -3B, and -3C which are
latent infection nuclear proteins important for
Epstein-Barr virus (EBV)-induced B-cell immortalisation
and the immune response to EBV infection.
Length = 254
Score = 29.3 bits (66), Expect = 5.3
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 286 CDRSLIHTIFPPCLRSTSPSSP---PHFHSLNILAMQKVPGSNPTIDKNLYSFFDCKYFN 342
D I F CL +T PS+P H +VP +++ + F
Sbjct: 148 TDNPYIKYWFHKCLGTTKPSTPWLSAH--------PNEVPYHRGLTSQDITAAFLRGQAL 199
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 376
GL E +++ E E E+ E E ++EE
Sbjct: 200 GLSALRTPGEPDDDATVETSSESEDSESESDDEE 233
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 28.8 bits (65), Expect = 5.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
E+EE E + E+E E+ ++EEE E K
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAK 110
Score = 28.4 bits (64), Expect = 6.3
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E+EE E + E+E E+ ++EEE E + ++++L
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAKRQQRKLN 117
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 29.9 bits (68), Expect = 5.4
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 17/63 (26%)
Query: 344 LEEEEEEEEEEEEEEEEE-----------------EEEEEEEEEEEEEEEEEEEEEEEEE 386
L E+E EE E E + + E EEE E E+ +
Sbjct: 536 LAEQEAAAREEREAAAEADPLVAAVLAAFPGAKIVDVRDLAPEAAEEEPAAEAEDPDALP 595
Query: 387 EEE 389
+++
Sbjct: 596 DDD 598
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 29.9 bits (68), Expect = 5.5
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 18/72 (25%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEE-------------EEEEEE 384
GLEEE+ E+E +E E+E + E+ EE ++E E EEEE+
Sbjct: 433 GLEEEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKKFGDERRTEIVEEEED 492
Query: 385 EEEEEEEEEEEE 396
E E+E+ EE+
Sbjct: 493 EIEDEDLIAEED 504
>gnl|CDD|220839 pfam10661, EssA, WXG100 protein secretion system (Wss), protein
EssA. The WXG100 protein secretion system (Wss) is
responsible for the secretion of WXG100 proteins
(pfam06013) such as ESAT-6 and CFP-10 in Mycobacterium
tuberculosis or EsxA and EsxB in Staphylococcus aureus.
In S. aureus, the Wss seems to be encoded by a locus of
eight CDS, called ess (eSAT-6 secretion system). This
locus encodes, amongst several other proteins, EssA, a
protein predicted to possess one transmembrane domain.
Due to its predicted membrane location and its absolute
requirement for WXG100 protein secretion, it has been
speculated that EssA could form a secretion apparatus in
conjunction with the polytopic membrane protein EsaA,
YukC (pfam10140) and YukAB, which is a membrane-bound
ATPase containing Ftsk/SpoIIIE domains (pfam01580)
called EssC in S. aureus and Snm1/Snm2 in Mycobacterium
tuberculosis. Proteins homologous to EssA, YukC, EsaA
and YukD seem absent from mycobacteria.
Length = 145
Score = 28.7 bits (64), Expect = 5.5
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
++ ++E+ E++ E E ++ E E EEE +++ E++E +++EN
Sbjct: 23 QKTDQEKNEKKLRETELDKLGIELFTTETEEEINKKKNAEQKEMEDIEN 71
Score = 28.3 bits (63), Expect = 8.0
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 344 LEEEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
L++ ++E+ E++ E E + E EEE +++ E++E E+ E E++E
Sbjct: 22 LQKTDQEKNEKKLRETELDKLGIELFTTETEEEINKKKNAEQKEMEDIENSLFSEDKEGN 81
Query: 396 EEEKELENE 404
KE ++
Sbjct: 82 VAVKETKDS 90
>gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction
only].
Length = 346
Score = 29.6 bits (67), Expect = 5.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+EE+ EE E EE EE + + ++ EE + E EE EE
Sbjct: 294 DEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEPLLEERSEE 346
Score = 29.6 bits (67), Expect = 5.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+EE+ EE E EE EE + + ++ EE + E EE EE
Sbjct: 294 DEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEPLLEERSEE 346
Score = 28.8 bits (65), Expect = 10.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
N ++ +EE+ EE E EE EE + + ++ EE + E EE +E
Sbjct: 287 INKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEPLLEERSEE 346
>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 29.4 bits (67), Expect = 5.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
+ L EE + E E E EE E E ++E E+ E +++
Sbjct: 325 LRALAELLEETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
>gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1). This family
consists of several mammalian dentin matrix protein 1
(DMP1) sequences. The dentin matrix acidic
phosphoprotein 1 (DMP1) gene has been mapped to human
chromosome 4q21. DMP1 is a bone and teeth specific
protein initially identified from mineralised dentin.
DMP1 is primarily localised in the nuclear compartment
of undifferentiated osteoblasts. In the nucleus, DMP1
acts as a transcriptional component for activation of
osteoblast-specific genes like osteocalcin. During the
early phase of osteoblast maturation, Ca(2+) surges into
the nucleus from the cytoplasm, triggering the
phosphorylation of DMP1 by a nuclear isoform of casein
kinase II. This phosphorylated DMP1 is then exported out
into the extracellular matrix, where it regulates
nucleation of hydroxyapatite. DMP1 is a unique molecule
that initiates osteoblast differentiation by
transcription in the nucleus and orchestrates
mineralised matrix formation extracellularly, at later
stages of osteoblast maturation. The DMP1 gene has been
found to be ectopically expressed in lung cancer
although the reason for this is unknown.
Length = 514
Score = 29.6 bits (66), Expect = 5.8
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
GL + E E +E+ EE + +E+ +E ++ E +E + +E E +EE
Sbjct: 300 GLSQSREHSRSESQEDSEENQSQEDSQEVQDPSSESSQEADLPSQENSSESQEE 353
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 29.5 bits (67), Expect = 5.9
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 344 LEEEEEEEEEE-----------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
LEEE +E EEE ++ + E+ E+ E+ E +E+ EE EE EEE +
Sbjct: 339 LEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEELEEELK 398
Query: 393 EEEEEEKELENEGH 406
E +EE + L +EG
Sbjct: 399 ELKEELESLYSEGK 412
>gnl|CDD|235937 PRK07111, PRK07111, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 735
Score = 29.5 bits (67), Expect = 5.9
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
+E E+ E EE +E+E EEEE + ++ +E+ +E EKE
Sbjct: 240 HRKEILEKLLELGVGEEVDEKESLNEEEELLLLLLALDFNIAKKAQEKADELAEKETRKR 299
Query: 405 GH 406
+
Sbjct: 300 TY 301
>gnl|CDD|217676 pfam03695, UPF0149, Uncharacterized protein family (UPF0149). The
protein in this family are about 190 amino acids long.
The function of these proteins is unknown.
Length = 158
Score = 28.8 bits (65), Expect = 6.0
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 22/81 (27%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEE------------EEEEEEEEEEEEE------ 385
L ++ E E+EEE+EEE E E EE+ EE EE +E
Sbjct: 57 LADDPFAFEPLLPEDEEEDEEERAEALAEWAEGFLLGLGLAEEDWEELSEELQELLLDLA 116
Query: 386 ----EEEEEEEEEEEEEKELE 402
E++E+E++EE E+ LE
Sbjct: 117 AIADLEDDEDEDDEEGEEALE 137
>gnl|CDD|219349 pfam07250, Glyoxal_oxid_N, Glyoxal oxidase N-terminus. This family
represents the N-terminus (approximately 300 residues)
of a number of plant and fungal glyoxal oxidase enzymes.
Glyoxal oxidase catalyzes the oxidation of aldehydes to
carboxylic acids, coupled with reduction of dioxygen to
hydrogen peroxide. It is an essential component of the
extracellular lignin degradation pathways of the
wood-rot fungus Phanerochaete chrysosporium.
Length = 243
Score = 29.4 bits (66), Expect = 6.1
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 485 SGSTLEAGSLVYTGG---SAHRVAVLSAEVLRKENSDGCHRAEM--TLSE-----CDATT 534
SG+ L G+LV TGG +V S +++D C E TL+ +
Sbjct: 71 SGALLSDGTLVQTGGDGDGERKVRYFSP----CDSNDTCDWIEFPATLAARRWYATNQIL 126
Query: 535 TLGRGIVRSPGERKEKNAEFFSRAGVNNNVTSSL 568
G I+ G R+ N EFF + G N ++
Sbjct: 127 PDGSFII--IGGRRAFNYEFFPKKGQNPRASALR 158
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 29.8 bits (66), Expect = 6.1
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 331 NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ Y D K L +++ E EE + E EE+ E E++ E +EEEE
Sbjct: 420 DWYKQEDPKDLEQLVQDQATLEITEENQISPEPVEEQPSVESTAPEDQVVEAIKEEEELL 479
Query: 391 EEEEEEEEKELENE 404
E+++ E EL +
Sbjct: 480 EQKKAAEFAELFGQ 493
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA, an
essential protein involved in cell division control.
YihA and its orthologs are small proteins that typically
contain less than 200 amino acid residues and consists
of the GTPase domain only (some of the eukaryotic
homologs contain an N-terminal extension of about 120
residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 28.6 bits (65), Expect = 6.1
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 184 KIKRSLNTYHDNRIH-VCLYFICPTGHGLKSLDLVCMKKLDS-KVNIIPIIAKADTISKS 241
K + + Y +NR + + + HG +DL ++ L+ + + ++ KAD + KS
Sbjct: 67 KWGKLIEEYLENRENLKGVVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKADKLKKS 126
Query: 242 ELQKFKTNIMTELTSNGVHIYEFPT 266
EL K I EL +
Sbjct: 127 ELAKVLKKIKEELNLFNILPPVILF 151
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 29.5 bits (67), Expect = 6.2
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EEE E E E + E +E E E + E E+ E EE+ EE EE
Sbjct: 305 EEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELEE 358
Score = 29.1 bits (66), Expect = 7.3
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEE 397
L EEE E E E + E +E E E + E E+ E EE+ EE EE
Sbjct: 300 AGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELEE 358
>gnl|CDD|220172 pfam09309, FCP1_C, FCP1, C-terminal. The C-terminal domain of
FCP-1 is required for interaction with the carboxy
terminal domain of RAP74. Interaction relies extensively
on van der Waals contacts between hydrophobic residues
situated within alpha-helices in both domains.
Length = 263
Score = 29.2 bits (65), Expect = 6.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 367 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EE+EE+ E E E E+EE E +E LE E
Sbjct: 221 NEEDEEDAESESSFESSNEDEEGSSSEADEMAAALEAE 258
>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular
processes, Chemotaxis and motility].
Length = 283
Score = 29.2 bits (66), Expect = 6.3
Identities = 20/92 (21%), Positives = 32/92 (34%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGH 406
+EEE EEE ++ E + + E E EE + E E E
Sbjct: 52 DEEEVAAASAEEEAKKALEPADPAKLPATAEPLELPAPLEEPAAPAAQAAEPLLPEAELR 111
Query: 407 CDFVKLREMLIRTNMEDMREKTHCRHYELYRK 438
+ LRE+L R ++ +L +
Sbjct: 112 KELSALRELLERLLAGLALQRRDPEGAKLLER 143
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 29.4 bits (66), Expect = 6.6
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 362 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+E+ +++EE + E E+E E + E ++ EEE ++K
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDK 479
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 29.2 bits (66), Expect = 6.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEE 365
N L++E +E EEE+ +EEEEE
Sbjct: 215 NHLQQESSLNDETEEEQPDEEEEE 238
>gnl|CDD|224317 COG1399, COG1399, Predicted metal-binding, possibly nucleic
acid-binding protein [General function prediction only].
Length = 176
Score = 28.5 bits (64), Expect = 6.8
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEE-----------EEEEEEEEEEEEEEE 389
+ +E+ +EE E++E E E+ E E E+E E E
Sbjct: 92 VRPDEQADEEPLEDDEVEVIEDGEIDLLESVEDEILLALPLVPLCEPECCGLCPPCGVWG 151
Query: 390 EEEEEEEEEKELEN 403
EE E++++++
Sbjct: 152 VLPEEGEKKEKVDP 165
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion
protein; Provisional.
Length = 196
Score = 28.8 bits (64), Expect = 6.8
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+EE + + + +E + E E + + + E EE+E E++E
Sbjct: 145 AKEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
Score = 28.4 bits (63), Expect = 9.7
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+EE + + + +E + E E + + + E EE+E E++E
Sbjct: 146 KEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
Score = 28.4 bits (63), Expect = 9.7
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+EE + + + +E + E E + + + E EE+E E++E
Sbjct: 146 KEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
Score = 28.4 bits (63), Expect = 9.7
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+EE + + + +E + E E + + + E EE+E E++E
Sbjct: 146 KEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
>gnl|CDD|150747 pfam10107, Endonuc_Holl, Endonuclease related to archaeal Holliday
junction resolvase. This domain is found in various
predicted bacterial endonucleases which are distantly
related to archaeal Holliday junction resolvases.
Length = 153
Score = 28.5 bits (64), Expect = 6.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
L+ + E+ E E+ E E + E E + EE +++EE+E ++
Sbjct: 16 LQGKVEKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIRKD 62
Score = 28.1 bits (63), Expect = 9.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 400
E+ E E+ E E + E E + EE +++EE+E K+
Sbjct: 21 EKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIRKD 62
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 29.2 bits (66), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 374 EEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
EEE +E E+E +E EE ++ E + E E
Sbjct: 273 EEELKEIEKEVRKEIEEAVKKAESDPEPNPE 303
>gnl|CDD|151958 pfam11521, TFIIE-A_C-term, C-terminal general transcription factor
TFIIE alpha. TFIIE is compiled of two subunits, alpha
and beta. This family of proteins are the C terminal
domain of the alpha subunit of the protein which is the
largest subunit and contains several functional domains
which are important for basal transcription and cell
growth. The C terminal end of the protein binds directly
to the amino-terminal PH domain of p62/Tfb1 (of IIH)
which is involved in the recruitment of the general
transcription factor IIH to the transcription
preinitiation complex. P53 competes for the same binding
site as TFIIE alpha which shows their structural
similarity. Like p53, TFIIE alpha 336-439 can activate
transcription in vivo.
Length = 86
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 385
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 388
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 389
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 355 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 356 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 358 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 359 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 7.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 381
+ + E +++ E + +EEE++E++E EE E+E
Sbjct: 1 SESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
>gnl|CDD|219663 pfam07957, DUF3294, Protein of unknown function (DUF3294). This
family was annotated as mitochondrial Ribosomal protein
MRP8, based on the presumed similarity of the
S.cerevisiae protein to an E.coli mitochondrial
ribosomal protein; however, this similarity is spurious,
and the function is not known [Wood, V].
Length = 217
Score = 29.0 bits (65), Expect = 7.0
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 387
K++ L ++EE +E + ++E E EE +E+ E+E ++ ++E +E
Sbjct: 148 AKFYELLLADQEEFQEFLQGKKEAFHIESEERDEDIEKEIKKYSKKELDE 197
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal
region/beta chain. The methionyl-tRNA synthetase (metG)
is a class I amino acyl-tRNA ligase. This model
describes a region of the methionyl-tRNA synthetase that
is present at the C-terminus of MetG in some species (E.
coli, B. subtilis, Thermotoga maritima, Methanobacterium
thermoautotrophicum), and as a separate beta chain in
Aquifex aeolicus. It is absent in a number of other
species (e.g. Mycoplasma genitalium, Mycobacterium
tuberculosis), while Pyrococcus horikoshii has both a
full length MetG and a second protein homologous to the
beta chain only. Proteins hit by This model should
called methionyl-tRNA synthetase beta chain if and only
if the model metG hits a separate protein not also hit
by This model [Protein synthesis, tRNA aminoacylation].
Length = 137
Score = 28.2 bits (63), Expect = 7.0
Identities = 10/45 (22%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 368 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKL 412
+++ EE + + +++E+++E E+ E ++E ++ DF K+
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKETITID-----DFEKV 40
Score = 27.8 bits (62), Expect = 9.0
Identities = 9/39 (23%), Positives = 25/39 (64%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
+++ EE + + +++E+++E E+ E ++E ++ EK
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKETITIDDFEK 39
>gnl|CDD|219555 pfam07753, DUF1609, Protein of unknown function (DUF1609). This
region is found in a number of hypothetical proteins
thought to be expressed by the eukaryote Encephalitozoon
cuniculi, an obligate intracellular microsporidial
parasite. It is approximately 200 residues long.
Length = 230
Score = 29.0 bits (65), Expect = 7.0
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 371 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLIRTNMEDMREKTHC 430
EEEE EE E EE +++ +K+ + HC + R + R + E ++E+
Sbjct: 1 EEEESEEAEVPLEEMAVGGARAKKKGGKKKSKGGRHCYKIHKRVLRWRKSPEKIKEELDK 60
Query: 431 RHYELYRKKRLEE 443
E ++ + +EE
Sbjct: 61 GSEEKWKGRSIEE 73
>gnl|CDD|217827 pfam03979, Sigma70_r1_1, Sigma-70 factor, region 1.1. Region 1.1
modulates DNA binding by region 2 and 4 when sigma is
unbound by the core RNA polymerase. Region 1.1 is also
involved in promoter binding.
Length = 79
Score = 27.2 bits (61), Expect = 7.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEE 367
+EE + EE +EE +E+ EEE E
Sbjct: 56 VEEADSEELDEETSSDEDAEEEAE 79
Score = 26.9 bits (60), Expect = 9.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEE 370
G+E EE + EE +EE +E+ EEE E
Sbjct: 51 MGIEVVEEADSEELDEETSSDEDAEEEAE 79
>gnl|CDD|220173 pfam09311, Rab5-bind, Rabaptin-like protein. Members of this
family are predominantly found in Rabaptin and allow for
binding to the GTPase Rab5. This interaction is
necessary and sufficient for Rab5-dependent recruitment
of Rabaptin5 to early endosomal membranes.
Length = 180
Score = 28.5 bits (64), Expect = 7.1
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 344 LEEEEEEEEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
L+ E+E + EE + + EE E E EEE + E + +E + EEE
Sbjct: 52 LQASEQEVIQLPEEVKHLQFLCLQRREELIESRTASEHLEEELKSEIDPLKELKPNLEEE 111
Query: 398 EKELENEGH 406
Sbjct: 112 LAAEIELPQ 120
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 29.3 bits (67), Expect = 7.1
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 361 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E+ EE +E EEE + E E +EE +E EE EE E+EL+
Sbjct: 58 QEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEELK 99
Score = 29.3 bits (67), Expect = 7.5
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLREMLI 417
+E+ EE +E EEE + E E +EE +E EE +ELE E L+ +L+
Sbjct: 58 QEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEE-------LKILLL 103
Score = 28.9 bits (66), Expect = 8.4
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
LE E E ++ +E+ EE +E EEE + E E +EE +E EE EE EEE K L
Sbjct: 44 LEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEELKIL 101
>gnl|CDD|225468 COG2916, Hns, DNA-binding protein H-NS [General function prediction
only].
Length = 128
Score = 28.2 bits (63), Expect = 7.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
LEE E+EE+ +E +EEE E EE +E+ E ++ EE
Sbjct: 20 LEEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLIKDGITPEE 68
>gnl|CDD|217373 pfam03115, Astro_capsid, Astrovirus capsid protein precursor. This
product is encoded by astrovirus ORF2, one of the three
astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein
undergoes an intracellular cleavage to form a 79kD
protein. Subsequently, extracellular trypsin cleavage
yields the three proteins forming the infectious virion.
Length = 787
Score = 29.4 bits (66), Expect = 7.2
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 340 YFNGL----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
YF + E EE E+ + E+ EE + E+E E+E++E + + +
Sbjct: 637 YFEMRTSLPQSRAELSGLEERAVEDAPDPYEDLISLEETDTEDESTEDEDDELDRFDLHD 696
Query: 396 EEEKELENEGHCDFVKLREMLIRTNMEDMRE 426
E E++ + V L LI M R
Sbjct: 697 SSGSEPEDDDENNRVTLLSTLINQGMSVERA 727
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 29.3 bits (67), Expect = 7.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEE 376
E++ E EE EEEE E EEE
Sbjct: 329 REKKAAELAAEEAEEEEAAEPEEES 353
>gnl|CDD|140276 PTZ00249, PTZ00249, variable surface protein Vir28; Provisional.
Length = 516
Score = 29.2 bits (65), Expect = 7.2
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L + E E EE +E + E E E E +EE++ + + + E+EE
Sbjct: 345 LGQSGPLESSESEETDEYAGPKGLPEPELELVELQEEDQRHGLKHDVDTFREDEEDTFLQ 404
Query: 404 EG 405
EG
Sbjct: 405 EG 406
>gnl|CDD|220222 pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium
adhesin A) is an adhesin which forms two alpha helices.
Length = 126
Score = 28.0 bits (62), Expect = 7.3
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
LE E + ++EE EEE++E+E E+E +E +E + EE + +EE
Sbjct: 31 NLEAEYQALMQKEEARFEEEKQEKETAEKEVQELKERQLGREELYAKLKEE 81
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 29.1 bits (66), Expect = 7.4
Identities = 21/57 (36%), Positives = 26/57 (45%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+ E E E EE +E+ E EE E E +EE E+ EE E EEE L
Sbjct: 176 DPGEPSVEIEIPEELKEKVAEAREELLEAVAETDEELMEKYLEEGELTEEELRAGLR 232
>gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis
carbohydrate kinase-like subgroup; belongs to the FGGY
family of carbohydrate kinases. This subgroup is
composed of the uncharacterized Yersinia
Pseudotuberculosis carbohydrate kinase that has been
named glyerol/xylulose kinase and similar
uncharacterized proteins from bacteria and eukaryota.
Carbohydrate kinases catalyze the ATP-dependent
phosphorylation of their carbohydrate substrate to
produce phosphorylated sugar and ADP. The presence of
Mg2+ is required for catalytic activity. This subgroup
shows high homology to characterized ribulokinases and
belongs to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 536
Score = 29.5 bits (67), Expect = 7.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 52 KENVPESWLRPKGTFLDLAEKETF 75
KEN+PE+W R G F DL + T+
Sbjct: 147 KENLPETWSR-AGKFFDLPDFLTW 169
>gnl|CDD|215038 PLN00040, PLN00040, Protein MAK16 homolog; Provisional.
Length = 233
Score = 29.0 bits (65), Expect = 7.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 331 NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 382
++Y+F Y LE EE EE EEE + ++ +++ E E E+E E
Sbjct: 176 DIYNFPSKSYNKVLEMEEVEEAEEELPKSDKNPNSKKKSRVHVEIEYEDEIE 227
>gnl|CDD|224427 COG1510, COG1510, Predicted transcriptional regulators
[Transcription].
Length = 177
Score = 28.5 bits (64), Expect = 7.4
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
L++ EE E+ ++ + E +E + + E + E+ E E E EE K LE
Sbjct: 113 LKKLLEELNEDLDDRDLTERIKEIKSKLERLLKWSEDYYELLTRLLEFLESEEVFKYLEK 172
Query: 404 EGHC 407
Sbjct: 173 PDKI 176
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 29.5 bits (67), Expect = 7.5
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 378
GL EEE + EEE E E E +
Sbjct: 118 GLGNSLEEESTDVVEEEGVESSGGGEGGSETGQGGG 153
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 29.5 bits (67), Expect = 7.5
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 386
+ + + + E E EE E E E + +++++++
Sbjct: 592 DDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 29.1 bits (66), Expect = 9.6
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 390
+ +++ + + + E E EE E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 29.1 bits (66), Expect = 9.6
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 346 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 391
+ +++ + + + E E EE E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 29.1 bits (66), Expect = 9.6
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
+ +++ + + + E E EE E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 29.1 bits (66), Expect = 9.6
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 348 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
+ +++ + + + E E EE E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 29.1 bits (66), Expect = 9.6
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 349 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+ +++ + + + E E EE E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 29.1 bits (66), Expect = 9.6
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 350 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 395
+ +++ + + + E E EE E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 29.1 bits (66), Expect = 9.6
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 396
+ +++ + + + E E EE E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 29.1 bits (66), Expect = 9.6
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 352 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
+ +++ + + + E E EE E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 29.1 bits (66), Expect = 9.6
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 353 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
+ +++ + + + E E EE E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
(Trep_dent_lipo). This entry represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 394
Score = 29.1 bits (65), Expect = 7.8
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 345 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
E +E+ E + E + E +E E + E +E + E+ +E EE++ EE K+L+ E
Sbjct: 21 EVKEQREMRIKVESSMKIEPKENEFLSKPEYDEHVKTPEQIKELEEKKAYEESLKQLQFE 80
>gnl|CDD|224400 COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 774
Score = 29.3 bits (66), Expect = 8.0
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
E E EE EEE +E + +E+ ++ E+ EE E E + EK +E
Sbjct: 606 EYEAEEILSILEEETARVLACDEVMKTIKEKYKKYGEDVEEISENEVRKIGEKAVE 661
>gnl|CDD|192445 pfam10018, Med4, Vitamin-D-receptor interacting Mediator subunit 4.
Members of this family function as part of the Mediator
(Med) complex, which links DNA-bound transcriptional
regulators and the general transcription machinery,
particularly the RNA polymerase II enzyme. They play a
role in basal transcription by mediating activation or
repression according to the specific complement of
transcriptional regulators bound to the promoter.
Length = 176
Score = 28.5 bits (64), Expect = 8.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
+ L +E E + EEEEE + E E + EEE+E E +E +
Sbjct: 133 SSLLSKEGIEPPGFDPEEEEERKAREAEAKTEEEDEREAQERNQ 176
Score = 28.1 bits (63), Expect = 9.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
+E E + EEEEE + E E + EEE+E E +E
Sbjct: 138 KEGIEPPGFDPEEEEERKAREAEAKTEEEDEREAQERNQ 176
>gnl|CDD|234465 TIGR04092, LTA_DltD, D-alanyl-lipoteichoic acid biosynthesis
protein DltD. Members of this protein family are DltD,
part of the DltABCD system widely distributed in the
Firmicutes for D-alanylation of lipoteichoic acids. The
most common form of LTA, as in Staphylococcus aureus,
has a backbone of polyglycerolphosphate.
Length = 383
Score = 29.1 bits (66), Expect = 8.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 219 MKKLDSKVN--IIPIIAK-ADT--ISKSELQKFKTNIMTELTSNGVHIYEFPTDDE 269
K+L V I P+ K D +SK Q++ I +L S G +I + +D E
Sbjct: 301 FKELGIDVLFVIPPVNGKWYDYTGLSKEMRQQYYKKIKYQLKSQGFNIADL-SDKE 355
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 28.9 bits (65), Expect = 8.1
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 360 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+ + ++ EE E + EEEE EE + + E
Sbjct: 25 IEKGKFSQQAEELRREAKLEEEEARISEEAQNAGLKSATDLAEK 68
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 29.2 bits (65), Expect = 8.4
Identities = 25/98 (25%), Positives = 45/98 (45%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N E+ E+ E+E E +E+ + +E E+EE E ++E E+ +EE + + K
Sbjct: 430 NTDTALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYKKEFEDLKEEVQNLQLKLS 489
Query: 402 ENEGHCDFVKLREMLIRTNMEDMREKTHCRHYELYRKK 439
E E + +K + +N R H EL + +
Sbjct: 490 ERELQLELLKEEVSKLASNQLKQRSDLERAHIELEKIR 527
>gnl|CDD|226454 COG3945, COG3945, Uncharacterized conserved protein [Function
unknown].
Length = 189
Score = 28.6 bits (64), Expect = 8.4
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 399
Y N ++ ++E+ E EE E E +EE +E E + EE EK
Sbjct: 125 YLNLIKRHIDKEDNVLFPFAESTLSEELNEVNSECFRFDEETFKETIHERYAKLLEELEK 184
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 27.9 bits (63), Expect = 8.4
Identities = 13/71 (18%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 393
K LE+ E+E ++ +E+ +++ E E++E+E +++ +E + ++++ +++ ++
Sbjct: 29 KRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKR 88
Query: 394 EEEEEKELENE 404
++EE +++ ++
Sbjct: 89 QQEELQKILDK 99
Score = 27.9 bits (63), Expect = 9.3
Identities = 14/62 (22%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 344 LEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
LE+E ++ + E E+ E+E ++ +E+ +++ E E++E+E +++ +E + ++++L+
Sbjct: 23 LEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQ 82
Query: 403 NE 404
+
Sbjct: 83 QD 84
>gnl|CDD|172630 PRK14141, PRK14141, heat shock protein GrpE; Provisional.
Length = 209
Score = 28.5 bits (64), Expect = 8.4
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 354 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENEGHCDFVKLR 413
+E+ + + + + E + E E++ E + E + E E L+
Sbjct: 3 DEKNKNGNPADAARDANNPVDREAKPYEMEDDPEPDPLEALKAENAE-----------LK 51
Query: 414 EMLIRT--NMEDMREKT 428
+ ++R ME++R++T
Sbjct: 52 DRMLRLAAEMENLRKRT 68
>gnl|CDD|222662 pfam14300, DUF4375, Domain of unknown function (DUF4375). This
family of proteins is found in bacteria. Proteins in
this family are typically between 156 and 204 amino
acids in length. There is a single completely conserved
residue G that may be functionally important.
Length = 123
Score = 27.9 bits (63), Expect = 8.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 339 KYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 383
K + E E EE +EE E+ EE +E ++E E EE+ E
Sbjct: 66 KLYGKHGEPIEREERDEEFMALFEQFEEFDELDDEFYEYEEDLTE 110
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 29.1 bits (66), Expect = 8.7
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 339 KYFN----------GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
KY+ +EE+ EE +EE E E E + E E E+ EE EE E+
Sbjct: 376 KYYKKYKKLKRAVEAVEEQIEETKEEIEYLESVEAQLENAESLEDLEEIREELIEQ 431
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 28.6 bits (63), Expect = 9.0
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 343 GLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 398
EEE +E EE + E E +E +EE+ +++ ++ + EE+E E+E +E
Sbjct: 29 ATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKE 84
>gnl|CDD|220777 pfam10486, PI3K_1B_p101, Phosphoinositide 3-kinase gamma adapter
protein p101 subunit. Class I PI3Ks are dual-specific
lipid and protein kinases involved in numerous
intracellular signaling pathways. Class IB PI3K,
p110gamma, is mainly activated by seven-transmembrane
G-protein-coupled receptors (GPCRs), through its
regulatory subunit p101 and G-protein beta-gamma
subunits.
Length = 856
Score = 29.2 bits (65), Expect = 9.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 379 EEEEEEEEEEEEEEEEEEEEKELENEGHC 407
E + E E+EE EEEEE++ E +G
Sbjct: 304 ESQLLEPVLSEDEEVEEEEEEDDETDGLS 332
>gnl|CDD|233815 TIGR02294, nickel_nikA, nickel ABC transporter, nickel/metallophore
periplasmic binding protein. Members of this family are
periplasmic nickel-binding proteins of nickel ABC
transporters. Most appear to be lipoproteins. This
protein was previously (circa 2003) thought to mediate
binding to nickel through water molecules, but is now
thought to involve a chelating organic molecule, perhaps
butane-1,2,4-tricarboxylate, acting as a metallophore
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 500
Score = 29.0 bits (65), Expect = 9.1
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 124 DSLFNTSFESTPSPHS-LPSVKLKAHTYELQENNVKLKEDSFKSIVDYIDNQFEAYLQEE 182
D +FN ++ + PHS + +++ K H E ++ + K++ KSI D + + E QE
Sbjct: 393 DMMFNYTWGAPYDPHSFISAMRAKGHGDESAQSGLANKDEIDKSIGDALASTDETERQEL 452
Query: 183 LKIKRSLNTYHDNRIHVCLYFI 204
K L T HD +++ + +I
Sbjct: 453 Y--KNILTTLHDEAVYIPISYI 472
>gnl|CDD|234338 TIGR03742, PRTRC_F, PRTRC system protein F. A novel genetic system
characterized by seven (usually) major proteins,
including a ParB homolog and a ThiF homolog, is commonly
found on plasmids or in bacterial chromosomal regions
near phage, plasmid, or transposon markers. It is most
common among the beta Proteobacteria. We designate the
system PRTRC, or ParB-Related,ThiF-Related Cassette.
This protein family is designated protein F. It is the
most divergent of the families.
Length = 342
Score = 29.0 bits (65), Expect = 9.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 332 LYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 377
L+ F Y+ G +EEE EE +E++E+ E E+ E+
Sbjct: 154 LFDHFSYIYWEGETDEEEALEELCDEDDEDREAYLPSVVEQALLED 199
>gnl|CDD|235359 PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha;
Provisional.
Length = 310
Score = 28.9 bits (66), Expect = 9.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 341 FNGLEEEEEEEEEEEEEEEEEEE 363
F LEE EE EEE EEEE E +
Sbjct: 223 FVDLEEAEEAEEEVEEEEPEFDP 245
>gnl|CDD|226127 COG3599, DivIVA, Cell division initiation protein [Cell division
and chromosome partitioning].
Length = 212
Score = 28.6 bits (64), Expect = 9.3
Identities = 11/56 (19%), Positives = 23/56 (41%)
Query: 347 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELE 402
+E+ +E +E E EE E + + + + +E + + + E E L
Sbjct: 152 QEDWDEILRSTVDEVEAANEEAERLADAAQADADRLRDECDIYVDTKLAELETRLS 207
>gnl|CDD|183329 PRK11829, PRK11829, biofilm formation regulator HmsP; Provisional.
Length = 660
Score = 29.1 bits (65), Expect = 9.3
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 598 LPLAECLKSLDLVCMKKLDSKVNIIPIIAKADTISKSELQ 637
PL+E + S+D+ KK+ + + I I+++A+ I +++Q
Sbjct: 44 QPLSEAILSVDIPQAKKILNSLLPIGILSRAEVILPNQIQ 83
>gnl|CDD|227225 COG4888, COG4888, Uncharacterized Zn ribbon-containing protein
[General function prediction only].
Length = 104
Score = 27.5 bits (61), Expect = 9.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 331 NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEE 365
++YS + Y G E +EE ++E E EE
Sbjct: 68 DVYSAWVDAYLEGRGCGESGTDEENDQEIESPGEE 102
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 28.9 bits (64), Expect = 9.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 344 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 384
LEE+E +E+ E+ + E+ E++ E + EE +E +
Sbjct: 103 LEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQ 143
>gnl|CDD|218574 pfam05389, MecA, Negative regulator of genetic competence (MecA).
This family contains several bacterial MecA proteins.
The development of competence in Bacillus subtilis is
regulated by growth conditions and several regulatory
genes. In complex media competence development is poor,
and there is little or no expression of late competence
genes. Mec mutations permit competence development and
late competence gene expression in complex media,
bypassing the requirements for many of the competence
regulatory genes. The mecA gene product acts negatively
in the development of competence. Null mutations in mecA
allow expression of a late competence gene comG, under
conditions where it is not normally expressed, including
in complex media and in cells mutant for several
competence regulatory genes. Overexpression of MecA
inhibits comG transcription.
Length = 212
Score = 28.3 bits (64), Expect = 9.5
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 342 NGLE----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 392
GLE + + ++ EE+E+E+ + E++ ++ +E E+ ++ +EE E
Sbjct: 69 QGLEVFVTKSDSDDGLNLEEDEDEDISDLLEQKFRDKGLDEMEDTLDDSKEESTE 123
>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP). NAP proteins
are involved in moving histones into the nucleus,
nucleosome assembly and chromatin fluidity. They affect
the transcription of many genes.
Length = 236
Score = 28.5 bits (64), Expect = 9.6
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 319 QKVPGSNPTIDK--NLYSFFDCKYFNGLEEEEEEEEEEEEEEEEEEEEEE 366
K G TI K SFF+ +F+ + +++++++EE EEE E + E
Sbjct: 168 NKKTGQTRTITKTVPAESFFN--FFSPPKVPDDDDDDDEELEEELELDYE 215
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 29.0 bits (65), Expect = 9.6
Identities = 12/62 (19%), Positives = 25/62 (40%)
Query: 338 CKYFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 397
L + E EE E+E+ E E+ ++ E + + +++ E+ +E
Sbjct: 347 RSKLQALAKVESRSLLSVEERLPTIEKEDLELYEQRQQLWFFENRKLWQRKKKLREQADE 406
Query: 398 EK 399
E
Sbjct: 407 EY 408
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 28.9 bits (65), Expect = 9.6
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 342 NGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEL 401
N + + EE + + E + + E + + EE+ +E + EE +
Sbjct: 873 NIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKR 932
Query: 402 ENE 404
E
Sbjct: 933 AKE 935
>gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G. After peptide
bond formation, this elongation factor of bacteria and
organelles catalyzes the translocation of the tRNA-mRNA
complex, with its attached nascent polypeptide chain,
from the A-site to the P-site of the ribosome. Every
completed bacterial genome has at least one copy, but
some species have additional EF-G-like proteins. The
closest homolog to canonical (e.g. E. coli) EF-G in the
spirochetes clusters as if it is derived from
mitochondrial forms, while a more distant second copy is
also present. Synechocystis PCC6803 has a few proteins
more closely related to EF-G than to any other
characterized protein. Two of these resemble E. coli
EF-G more closely than does the best match from the
spirochetes; it may be that both function as authentic
EF-G [Protein synthesis, Translation factors].
Length = 689
Score = 29.0 bits (65), Expect = 9.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 340 YFNGLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 394
+FNG + + E+E + E+ +E E E E +EE E+ E EE EE
Sbjct: 185 FFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEE 239
>gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed.
Length = 691
Score = 29.0 bits (66), Expect = 9.8
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 357 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELENE 404
++E + EEE+ + +E+ EE E+ E E +EE EK LE E
Sbjct: 185 DDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGE 232
>gnl|CDD|219106 pfam06614, Neuromodulin, Neuromodulin. This family consists of
several neuromodulin (Axonal membrane protein GAP-43)
sequences and is found in conjunction with pfam00612.
GAP-43 is a neuronal calmodulin-binding phosphoprotein
that is concentrated in growth cones and pre-synaptic
terminals.
Length = 174
Score = 28.3 bits (62), Expect = 10.0
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 351 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKELEN 403
E+ + + E+E E +EEE+++ EE + E ++EE +EEE + + EN
Sbjct: 121 EDATAKAAPQPEQETAESSQEEEKKDAVEETKPSESAQQEEAKEEEAKADQEN 173
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.130 0.374
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,662,607
Number of extensions: 3447360
Number of successful extensions: 67399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34207
Number of HSP's successfully gapped: 6598
Length of query: 650
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 547
Effective length of database: 6,369,140
Effective search space: 3483919580
Effective search space used: 3483919580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (27.5 bits)