BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8482
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 73/150 (48%), Gaps = 43/150 (28%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRK 60
MLIR NMED+RE+TH RHYELYR+ +LEE+ K + ++E YE R
Sbjct: 277 MLIRVNMEDLREQTHTRHYELYRRCKLEEMG--FKDTDPDSKPFSLQET-----YEAKRN 329
Query: 61 KRLEEL-----------------------------HAKFDKLKKDHADEKKRLEDARKKL 91
+ L EL H KFD+LKK H DEKK+LED +K L
Sbjct: 330 EFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSL 389
Query: 92 EEDLLEFNRRK-------QQMATMSGSHTL 114
++++ F +RK Q + GS TL
Sbjct: 390 DDEVNAFKQRKTAAELLQSQGSQAGGSQTL 419
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRL 27
+IRT+++D++E TH HYE YR KRL
Sbjct: 244 FVIRTHLQDLKEVTHNIHYETYRAKRL 270
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 40 RTNMEDMREKTHCRHYELYRKKRL 63
RT+++D++E TH HYE YR KRL
Sbjct: 247 RTHLQDLKEVTHNIHYETYRAKRL 270
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 24/146 (16%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEV------RDMLKHRHNRTNMEDMREK----- 49
MLIRT+M+D+++ T+ HYE YR ++L V + K + ++ + M E+
Sbjct: 269 MLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHV 328
Query: 50 --------THCRHYELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEF--- 98
+ +E+ K+++++L +L++ H KK LE K+LEE +F
Sbjct: 329 AKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDE 388
Query: 99 --NRRKQQMATMSGSHTLTLGKSKKK 122
N QQ + + TL K+KKK
Sbjct: 389 KANWEAQQRILEQQNSSRTLEKNKKK 414
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 33 MLKHRHNRTNMEDMREKTHCRHYELYRKKRLEEL 66
+L++ RT+M+D+++ T+ HYE YR ++L +
Sbjct: 265 ILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAV 298
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEV 30
MLIRT+M+D+++ T+ HYE YR ++L V
Sbjct: 241 MLIRTHMQDLKDVTNNVHYENYRSRKLAAV 270
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 33 MLKHRHNRTNMEDMREKTHCRHYELYRKKRLEEL 66
+L++ RT+M+D+++ T+ HYE YR ++L +
Sbjct: 237 ILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAV 270
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRL 27
MLIRT+M+D+++ T+ HYE YR ++L
Sbjct: 246 MLIRTHMQDLKDVTNNVHYENYRSRKL 272
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 33 MLKHRHNRTNMEDMREKTHCRHYELYRKKRL 63
+L++ RT+M+D+++ T+ HYE YR ++L
Sbjct: 242 ILRNMLIRTHMQDLKDVTNNVHYENYRSRKL 272
>pdb|2WRF|A Chain A, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|B Chain B, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|C Chain C, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|D Chain D, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|E Chain E, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|F Chain F, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|G Chain G, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|H Chain H, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
pdb|2WRF|I Chain I, Structure Of H2 Avian Jena Hemagglutinin With Human
Receptor
Length = 507
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 63 LEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLE-FNRRKQQMATMSGSHTLTLGKSKK 121
+E+++ +F+ + K+ ++ +KRLE+ KK+E+ L+ + + + M TL S
Sbjct: 396 IEKMNTQFEAVGKEFSNLEKRLENLNKKMEDGFLDVWTYNAELLVLMENEMTLDFHDSNV 455
Query: 122 K 122
K
Sbjct: 456 K 456
>pdb|2WR0|A Chain A, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|B Chain B, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|C Chain C, Structures Of Influenza H2 Hemagglutinins
pdb|2WR1|A Chain A, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|B Chain B, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|C Chain C, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR2|A Chain A, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|B Chain B, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|C Chain C, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
Length = 509
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 63 LEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLE-FNRRKQQMATMSGSHTLTLGKSKK 121
+E+++ +F+ + K+ ++ ++RLE+ KK+E+ L+ + + + M TL S
Sbjct: 396 IEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNV 455
Query: 122 K 122
K
Sbjct: 456 K 456
>pdb|2WR7|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WRB|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRC|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
Length = 506
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 63 LEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLE-FNRRKQQMATMSGSHTLTLGKSKK 121
+E+++ +F+ + K+ ++ ++RLE+ KK+E+ L+ + + + M TL S
Sbjct: 396 IEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNV 455
Query: 122 K 122
K
Sbjct: 456 K 456
>pdb|2WRE|A Chain A, Structure Of H2 Japan Hemagglutinin With Human Receptor
pdb|2WRE|B Chain B, Structure Of H2 Japan Hemagglutinin With Human Receptor
pdb|2WRE|C Chain C, Structure Of H2 Japan Hemagglutinin With Human Receptor
Length = 505
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 63 LEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLE-FNRRKQQMATMSGSHTLTLGKSKK 121
+E+++ +F+ + K+ ++ ++RLE+ KK+E+ L+ + + + M TL S
Sbjct: 396 IEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNV 455
Query: 122 K 122
K
Sbjct: 456 K 456
>pdb|2WRD|A Chain A, Structure Of H2 Japan Hemagglutinin
pdb|2WRD|B Chain B, Structure Of H2 Japan Hemagglutinin
pdb|2WRD|C Chain C, Structure Of H2 Japan Hemagglutinin
Length = 505
Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 63 LEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLE-FNRRKQQMATMSGSHTLTLGKSKK 121
+E+++ +F+ + K+ ++ ++RLE+ KK+E+ L+ + + + M TL S
Sbjct: 396 IEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNV 455
Query: 122 K 122
K
Sbjct: 456 K 456
>pdb|3QQB|B Chain B, Crystal Structure Of Ha2 R106h Mutant Of H2 Hemagglutinin,
Neutral Ph Form
pdb|3QQE|B Chain B, Crystal Structure Of Ha2 R106h Mutant Of H2 Hemagglutinin,
Re- Neutralized Form
pdb|3QQO|B Chain B, Crystal Structure Of Ha2 R106h Mutant Of H2 Hemagglutinin,
Acidic Ph Form
pdb|3QQO|D Chain D, Crystal Structure Of Ha2 R106h Mutant Of H2 Hemagglutinin,
Acidic Ph Form
pdb|3QQO|F Chain F, Crystal Structure Of Ha2 R106h Mutant Of H2 Hemagglutinin,
Acidic Ph Form
Length = 174
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 63 LEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLE-FNRRKQQMATMSGSHTLTLGKSKK 121
+E+++ +F+ + K+ ++ ++RLE+ KK+E+ L+ + + + M HTL S
Sbjct: 56 IEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENEHTLDFHDSNV 115
Query: 122 K 122
K
Sbjct: 116 K 116
>pdb|2WR3|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR3|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR3|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR4|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR4|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR4|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR5|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin
pdb|2WR5|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin
pdb|2WR5|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin
Length = 507
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 63 LEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLE-FNRRKQQMATMSGSHTLTLGKSKK 121
+ +++ +F+ + K+ ++ ++RLE+ KK+E+ L+ + + + M TL S
Sbjct: 396 IAKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNV 455
Query: 122 K 122
K
Sbjct: 456 K 456
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRL 27
MLI T+M+D++E T HYE +R +RL
Sbjct: 279 MLI-THMQDLQEVTQDLHYENFRSERL 304
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 41 TNMEDMREKTHCRHYELYRKKRL 63
T+M+D++E T HYE +R +RL
Sbjct: 282 THMQDLQEVTQDLHYENFRSERL 304
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRL 27
MLI T+M+D++E T HYE +R +RL
Sbjct: 247 MLI-THMQDLQEVTQDLHYENFRSERL 272
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 41 TNMEDMREKTHCRHYELYRKKRL 63
T+M+D++E T HYE +R +RL
Sbjct: 250 THMQDLQEVTQDLHYENFRSERL 272
>pdb|3KU3|B Chain B, Crystal Structure Of A H2n2 Influenza Virus
Hemagglutinin, Avian Like
pdb|3KU5|B Chain B, Crystal Structure Of A H2n2 Influenza Virus
Hemagglutinin, Human Like
pdb|3KU6|B Chain B, Crystal Structure Of A H2n2 Influenza Virus
Hemagglutinin, 226l228G
pdb|4HF5|B Chain B, Crystal Structure Of Fab 8f8 In Complex A H2n2 Influenza
Virus Hemagglutinin
pdb|4HFU|B Chain B, Crystal Structure Of Fab 8m2 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|AA Chain a, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|BB Chain b, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|CC Chain c, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|DD Chain d, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|EE Chain e, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|FF Chain f, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|GG Chain g, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|HH Chain h, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|II Chain i, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 174
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 63 LEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLE 97
+E+++ +F+ + K+ ++ ++RLE+ KK+E+ L+
Sbjct: 56 IEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLD 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,482,494
Number of Sequences: 62578
Number of extensions: 134013
Number of successful extensions: 557
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 72
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)