Query psy8482
Match_columns 122
No_of_seqs 134 out of 380
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 20:01:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3859|consensus 99.9 2.7E-23 5.9E-28 169.0 12.0 106 1-106 277-404 (406)
2 KOG2655|consensus 99.5 5.1E-14 1.1E-18 117.2 7.0 95 1-95 262-362 (366)
3 COG5019 CDC3 Septin family pro 99.5 1.6E-13 3.4E-18 114.2 9.0 94 1-94 266-368 (373)
4 KOG1547|consensus 98.9 5.9E-10 1.3E-14 89.9 0.8 31 1-31 287-317 (336)
5 KOG3859|consensus 89.0 2.8 6E-05 35.3 7.9 50 56-105 325-396 (406)
6 PRK13729 conjugal transfer pil 79.5 13 0.00028 32.7 8.2 56 47-102 59-120 (475)
7 PF13864 Enkurin: Calmodulin-b 72.0 27 0.00058 23.7 6.7 45 56-100 39-95 (98)
8 PF06818 Fez1: Fez1; InterPro 65.8 26 0.00056 27.5 6.2 40 64-103 134-173 (202)
9 PRK12704 phosphodiesterase; Pr 52.0 1.7E+02 0.0037 25.8 9.9 18 56-73 81-98 (520)
10 TIGR03319 YmdA_YtgF conserved 50.3 1.8E+02 0.0039 25.6 10.0 17 56-72 75-91 (514)
11 COG4026 Uncharacterized protei 45.9 1.6E+02 0.0036 23.9 9.3 62 42-103 136-201 (290)
12 PF08946 Osmo_CC: Osmosensory 43.8 69 0.0015 19.5 4.1 19 84-102 17-35 (46)
13 PF09340 NuA4: Histone acetylt 43.8 94 0.002 20.5 5.5 28 76-103 6-33 (80)
14 KOG4466|consensus 36.7 2.5E+02 0.0053 23.3 8.0 41 56-99 96-136 (291)
15 PF07352 Phage_Mu_Gam: Bacteri 36.0 1.7E+02 0.0036 21.1 7.7 48 56-103 16-63 (149)
16 COG5019 CDC3 Septin family pro 35.7 2.9E+02 0.0062 23.8 8.9 24 42-65 271-294 (373)
17 KOG0964|consensus 33.4 1.7E+02 0.0037 28.6 6.9 55 44-99 157-211 (1200)
18 KOG4634|consensus 32.6 1.5E+02 0.0032 21.0 5.0 36 43-78 31-77 (105)
19 PF04568 IATP: Mitochondrial A 31.3 1.8E+02 0.004 20.2 7.9 25 71-95 75-99 (100)
20 PF02370 M: M protein repeat; 31.0 82 0.0018 16.1 3.6 15 89-103 4-18 (21)
21 PF09340 NuA4: Histone acetylt 30.7 1.5E+02 0.0034 19.5 4.7 28 80-107 3-30 (80)
22 PF13747 DUF4164: Domain of un 29.5 1.8E+02 0.0039 19.6 7.8 52 56-107 14-67 (89)
23 PRK00106 hypothetical protein; 29.5 4.1E+02 0.009 23.7 9.9 15 58-72 98-112 (535)
24 cd07624 BAR_SNX7_30 The Bin/Am 29.2 2.5E+02 0.0055 21.2 9.8 62 42-103 107-169 (200)
25 KOG0728|consensus 28.1 3.6E+02 0.0079 22.7 7.4 47 45-99 17-65 (404)
26 PRK13729 conjugal transfer pil 26.7 3.8E+02 0.0081 23.8 7.6 21 75-95 100-120 (475)
27 PRK04778 septation ring format 26.4 4.3E+02 0.0094 23.3 8.0 63 46-108 124-187 (569)
28 PF15346 ARGLU: Arginine and g 25.6 2.9E+02 0.0063 20.6 7.7 9 113-121 135-143 (149)
29 PF08172 CASP_C: CASP C termin 24.0 2.7E+02 0.0058 22.3 5.8 25 77-101 98-122 (248)
30 PF06160 EzrA: Septation ring 23.1 5.3E+02 0.011 22.8 9.6 65 45-109 119-184 (560)
31 TIGR01069 mutS2 MutS2 family p 23.0 5.4E+02 0.012 23.9 8.2 12 2-13 439-450 (771)
32 PF08703 PLC-beta_C: PLC-beta 22.5 3.7E+02 0.008 20.8 8.8 47 56-102 118-172 (185)
33 PF11068 YlqD: YlqD protein; 22.1 3.1E+02 0.0068 19.8 10.8 61 44-104 19-85 (131)
34 COG4026 Uncharacterized protei 21.7 4.5E+02 0.0097 21.5 7.7 22 58-79 139-160 (290)
35 KOG1161|consensus 20.8 4.5E+02 0.0098 22.0 6.6 59 41-99 51-113 (310)
No 1
>KOG3859|consensus
Probab=99.90 E-value=2.7e-23 Score=169.04 Aligned_cols=106 Identities=51% Similarity=0.736 Sum_probs=98.2
Q ss_pred CcccchhhhhhhhccccchhHHHHhhhhhhh--ccchh-------------hhh----hh-hhHHHHHHHHHHHH--HHH
Q psy8482 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEVR--DMLKH-------------RHN----RT-NMEDMREKTHCRHY--ELY 58 (122)
Q Consensus 1 ~Li~t~~~dL~~~T~~~~yE~yR~~~L~~~~--~~~p~-------------~~~----~~-~EeemrqvF~~kV~--E~k 58 (122)
|||||||.||++.||..|||+||+.+|..|| |+||+ |.+ ++ +|++|++.|+++|+ |+.
T Consensus 277 mLirtNmedlReqTHtrhYElyRr~kL~~Mgf~dv~~~~~p~s~qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~e 356 (406)
T KOG3859|consen 277 MLIRTNMEDLREQTHTRHYELYRRCKLEEMGFKDVDPDNKPFSLQETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAE 356 (406)
T ss_pred HHccccHHHHhhhccccchHHHHHHHHHHcCCccCCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999998 65552 344 46 99999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 59 RKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQMA 106 (122)
Q Consensus 59 lKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~~~~ 106 (122)
+++.|.+|+.+++.+++.+.+++++||+++|+|++++.+|...+++.+
T Consensus 357 lke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~rk~~~~ 404 (406)
T KOG3859|consen 357 LKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRRKTAAE 404 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999997654
No 2
>KOG2655|consensus
Probab=99.49 E-value=5.1e-14 Score=117.21 Aligned_cols=95 Identities=23% Similarity=0.292 Sum_probs=79.9
Q ss_pred CcccchhhhhhhhccccchhHHHHhhhhhhhccc-hhhhh--hh-hhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q psy8482 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEVRDML-KHRHN--RT-NMEDMREKTHCRHY--ELYRKKRLEELHAKFDKLK 74 (122)
Q Consensus 1 ~Li~t~~~dL~~~T~~~~yE~yR~~~L~~~~~~~-p~~~~--~~-~EeemrqvF~~kV~--E~klKe~E~EL~~r~Eelk 74 (122)
|||+|||+||+++|+++||||||+++|+..+..+ |...+ +. ++..|..+|..+++ +.++.+++.+|.+++.+++
T Consensus 262 ~Li~thl~dLk~~T~~~~YEnYR~~~L~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~~~e~~l~~~~~e~~ 341 (366)
T KOG2655|consen 262 LLIRTHLEDLKDTTNNLLYENYRTEKLEGLLYKGENGEHEARLKNDELALEKVITQKVKEKEDRLRQEEEELIRRHQEMK 341 (366)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccCCchhhhhhhcccchhhHHHHhhhhhhhhhHHHhhHHHHHHHHHHHH
Confidence 6899999999999999999999999999988322 21122 34 88999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8482 75 KDHADEKKRLEDARKKLEEDL 95 (122)
Q Consensus 75 ~~l~~~~~~lEek~r~LEee~ 95 (122)
+.++++.+++.....++....
T Consensus 342 ~~l~~~~~~~~~~~~~~~~~~ 362 (366)
T KOG2655|consen 342 KKLEAQMQEISDLKIQLLSLK 362 (366)
T ss_pred HHHHHHHHHHHHHHhhhhhhc
Confidence 999998877777776665543
No 3
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.48 E-value=1.6e-13 Score=114.23 Aligned_cols=94 Identities=23% Similarity=0.347 Sum_probs=78.9
Q ss_pred CcccchhhhhhhhccccchhHHHHhhhhhhhcc-chhhhh-----hh-hhHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy8482 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEVRDM-LKHRHN-----RT-NMEDMREKTHCRHY--ELYRKKRLEELHAKFD 71 (122)
Q Consensus 1 ~Li~t~~~dL~~~T~~~~yE~yR~~~L~~~~~~-~p~~~~-----~~-~EeemrqvF~~kV~--E~klKe~E~EL~~r~E 71 (122)
+||+|||+||+++|++.+|||||+++|+..++. +|.-.. +. .+..|+..|.++|. |.++.++|+.|..++.
T Consensus 266 ~Li~thL~~L~~~T~~~~YE~YR~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~ 345 (373)
T COG5019 266 LLIRTHLQELKETTENLLYENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERK 345 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhhhhccHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999998843 343221 34 88999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 72 KLKKDHADEKKRLEDARKKLEED 94 (122)
Q Consensus 72 elk~~l~~~~~~lEek~r~LEee 94 (122)
+++..+++...+++.....|+..
T Consensus 346 ~~n~~Le~~~~~l~~~e~~l~~~ 368 (373)
T COG5019 346 ELNSKLEEIQKKLEDLEKRLEKL 368 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999988866666665555543
No 4
>KOG1547|consensus
Probab=98.85 E-value=5.9e-10 Score=89.94 Aligned_cols=31 Identities=52% Similarity=0.898 Sum_probs=29.4
Q ss_pred CcccchhhhhhhhccccchhHHHHhhhhhhh
Q psy8482 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEVR 31 (122)
Q Consensus 1 ~Li~t~~~dL~~~T~~~~yE~yR~~~L~~~~ 31 (122)
+|||||||||+++||++|||+||+.+|..++
T Consensus 287 fliRtHlQdlke~Ts~iHyE~yR~krLn~~~ 317 (336)
T KOG1547|consen 287 FLIRTHLQDLKETTSNIHYETYRAKRLNELK 317 (336)
T ss_pred HHHHHHHHHHHHHhhhhhHhHHHHHHHhhhc
Confidence 4899999999999999999999999999876
No 5
>KOG3859|consensus
Probab=89.01 E-value=2.8 Score=35.29 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 56 ELYRKKRLEELHAKFDKLKKDHADEKK----------------------RLEDARKKLEEDLLEFNRRKQQM 105 (122)
Q Consensus 56 E~klKe~E~EL~~r~Eelk~~l~~~~~----------------------~lEek~r~LEee~~~~e~~k~~~ 105 (122)
|++..+...+|+++.+++++.|-+..+ ...++.+.||+.+..++.+..+|
T Consensus 325 eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f 396 (406)
T KOG3859|consen 325 EAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAF 396 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666555444 44455555555555555555443
No 6
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=79.53 E-value=13 Score=32.68 Aligned_cols=56 Identities=5% Similarity=0.134 Sum_probs=40.5
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 47 REKTHCRHYE---LYRKKRLEELHAKFDKLKKDHA---DEKKRLEDARKKLEEDLLEFNRRK 102 (122)
Q Consensus 47 rqvF~~kV~E---~klKe~E~EL~~r~Eelk~~l~---~~~~~lEek~r~LEee~~~~e~~k 102 (122)
..-|.++|.- .....+-.+|..+++.++.+++ .+...+++++..++.++..|+..-
T Consensus 59 ~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 59 DTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4456666763 3333344667777888887777 778888889999999998888775
No 7
>PF13864 Enkurin: Calmodulin-binding
Probab=72.04 E-value=27 Score=23.67 Aligned_cols=45 Identities=36% Similarity=0.536 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q psy8482 56 ELYRKKRLEELHAKFDKLKKDHAD------------EKKRLEDARKKLEEDLLEFNR 100 (122)
Q Consensus 56 E~klKe~E~EL~~r~Eelk~~l~~------------~~~~lEek~r~LEee~~~~e~ 100 (122)
+..+.+....|...+.+++..+.. .+..+|.++.+||..+..|+.
T Consensus 39 eeER~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 39 EEERQELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 777888888899999999988775 356778888888888877764
No 8
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=65.81 E-value=26 Score=27.49 Aligned_cols=40 Identities=20% Similarity=0.447 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 64 EELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQ 103 (122)
Q Consensus 64 ~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~ 103 (122)
..|....+.++..+..+++..++..-.|+.|+..|..+|-
T Consensus 134 ~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKe 173 (202)
T PF06818_consen 134 GSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKE 173 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4488888999999999999999999999999999998884
No 9
>PRK12704 phosphodiesterase; Provisional
Probab=52.03 E-value=1.7e+02 Score=25.84 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8482 56 ELYRKKRLEELHAKFDKL 73 (122)
Q Consensus 56 E~klKe~E~EL~~r~Eel 73 (122)
+.++.+.|..|..+.+.+
T Consensus 81 e~~L~qrE~rL~~Ree~L 98 (520)
T PRK12704 81 RNELQKLEKRLLQKEENL 98 (520)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 10
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=50.33 E-value=1.8e+02 Score=25.64 Aligned_cols=17 Identities=6% Similarity=-0.076 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8482 56 ELYRKKRLEELHAKFDK 72 (122)
Q Consensus 56 E~klKe~E~EL~~r~Ee 72 (122)
+.++.+.|..|..+.+.
T Consensus 75 e~rL~qrE~rL~qRee~ 91 (514)
T TIGR03319 75 RNELQRLERRLLQREET 91 (514)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 11
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.93 E-value=1.6e+02 Score=23.93 Aligned_cols=62 Identities=27% Similarity=0.414 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 42 NMEDMREKTHCRHY-ELYRKKRLEELHAKFDKLKKDH---ADEKKRLEDARKKLEEDLLEFNRRKQ 103 (122)
Q Consensus 42 ~EeemrqvF~~kV~-E~klKe~E~EL~~r~Eelk~~l---~~~~~~lEek~r~LEee~~~~e~~k~ 103 (122)
.=++++..|..-++ -..+.....+|+..+++.+..+ +-+...|++.++.|..+.-++..++.
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 44567777777777 4455556666777777666544 44566778888888877777777663
No 12
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=43.79 E-value=69 Score=19.49 Aligned_cols=19 Identities=16% Similarity=0.511 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8482 84 LEDARKKLEEDLLEFNRRK 102 (122)
Q Consensus 84 lEek~r~LEee~~~~e~~k 102 (122)
+|.+...++.+++.+++..
T Consensus 17 IEqkiedid~qIaeLe~KR 35 (46)
T PF08946_consen 17 IEQKIEDIDEQIAELEAKR 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3444444555555555444
No 13
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=43.76 E-value=94 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 76 DHADEKKRLEDARKKLEEDLLEFNRRKQ 103 (122)
Q Consensus 76 ~l~~~~~~lEek~r~LEee~~~~e~~k~ 103 (122)
.+.+.++.|+.....||.++-++|..+-
T Consensus 6 ~l~~~k~~Le~~L~~lE~qIy~~Et~YL 33 (80)
T PF09340_consen 6 ELLQKKKKLEKDLAALEKQIYDKETSYL 33 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888883
No 14
>KOG4466|consensus
Probab=36.73 E-value=2.5e+02 Score=23.33 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 56 ELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFN 99 (122)
Q Consensus 56 E~klKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e 99 (122)
+..++.+-++...+...++..+.. .|+++++.|++++-.+.
T Consensus 96 e~E~~aAk~e~E~~~~lLke~l~s---eleeKkrkieeeR~smD 136 (291)
T KOG4466|consen 96 ECEIKAAKKEYESKKKLLKENLIS---ELEEKKRKIEEERLSMD 136 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhh
Confidence 444444444444444444444443 58888888888876554
No 15
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=35.98 E-value=1.7e+02 Score=21.13 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 56 ELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQ 103 (122)
Q Consensus 56 E~klKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~ 103 (122)
...+.+.+..++.....++..+.++...+...+..|+..+..|-....
T Consensus 16 ~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r 63 (149)
T PF07352_consen 16 QREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANR 63 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 666777788888999999999999999999999999999888876553
No 16
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=35.68 E-value=2.9e+02 Score=23.76 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 42 NMEDMREKTHCRHYELYRKKRLEE 65 (122)
Q Consensus 42 ~EeemrqvF~~kV~E~klKe~E~E 65 (122)
...+|...+...+||.++.+....
T Consensus 271 hL~~L~~~T~~~~YE~YR~e~L~~ 294 (373)
T COG5019 271 HLQELKETTENLLYENYRTEKLSG 294 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777888888877777776665544
No 17
>KOG0964|consensus
Probab=33.45 E-value=1.7e+02 Score=28.57 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 44 EDMREKTHCRHYELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFN 99 (122)
Q Consensus 44 eemrqvF~~kV~E~klKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e 99 (122)
+=|+.|==.+|||.++.++..-|.+ .++-+......+..++++.+.||+++..++
T Consensus 157 ~LLkeVaGtrvYeerreeSlkim~E-T~qK~ekI~ell~yieerLreLEeEKeeL~ 211 (1200)
T KOG0964|consen 157 ELLKEVAGTRVYEERREESLKIMEE-TKQKREKINELLKYIEERLRELEEEKEELE 211 (1200)
T ss_pred HHHHHhcccchhHHhHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3467777788888888888776654 345566667777788888888888887765
No 18
>KOG4634|consensus
Probab=32.63 E-value=1.5e+02 Score=20.97 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q psy8482 43 MEDMREKTHCRHYELYRK-----------KRLEELHAKFDKLKKDHA 78 (122)
Q Consensus 43 EeemrqvF~~kV~E~klK-----------e~E~EL~~r~Eelk~~l~ 78 (122)
-+=+-+.|..||+|-+.+ +.+++|++....+...+.
T Consensus 31 ~DpIqqlFldKvREy~~ks~~Gklvds~pe~e~eLk~el~rla~qfg 77 (105)
T KOG4634|consen 31 LDPIQQLFLDKVREYKKKSPAGKLVDSDPEYEQELKEELFRLAQQFG 77 (105)
T ss_pred hChHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 345678999999988888 678888777777766554
No 19
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=31.26 E-value=1.8e+02 Score=20.21 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 71 DKLKKDHADEKKRLEDARKKLEEDL 95 (122)
Q Consensus 71 Eelk~~l~~~~~~lEek~r~LEee~ 95 (122)
+.|+..+.++.....+.+..|++.+
T Consensus 75 ~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 75 KKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555554444455555555443
No 20
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=30.98 E-value=82 Score=16.10 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy8482 89 KKLEEDLLEFNRRKQ 103 (122)
Q Consensus 89 r~LEee~~~~e~~k~ 103 (122)
++||.+.+.++.+++
T Consensus 4 k~lEa~~qkLe~e~q 18 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQ 18 (21)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444443
No 21
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=30.75 E-value=1.5e+02 Score=19.50 Aligned_cols=28 Identities=36% Similarity=0.447 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8482 80 EKKRLEDARKKLEEDLLEFNRRKQQMAT 107 (122)
Q Consensus 80 ~~~~lEek~r~LEee~~~~e~~k~~~~~ 107 (122)
+++.+-.+++.|+.....++.....+|.
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et 30 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKET 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777788888777777766665
No 22
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=29.51 E-value=1.8e+02 Score=19.55 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8482 56 ELYRKKRLEELHAKFDKLKK--DHADEKKRLEDARKKLEEDLLEFNRRKQQMAT 107 (122)
Q Consensus 56 E~klKe~E~EL~~r~Eelk~--~l~~~~~~lEek~r~LEee~~~~e~~k~~~~~ 107 (122)
+..+...|.-+..+++.... .++.+.+.+...+..|..+......+...|+.
T Consensus 14 ~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~ 67 (89)
T PF13747_consen 14 EAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEE 67 (89)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Confidence 44555555555555555444 55566666666666666666666666655554
No 23
>PRK00106 hypothetical protein; Provisional
Probab=29.46 E-value=4.1e+02 Score=23.73 Aligned_cols=15 Identities=13% Similarity=-0.011 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy8482 58 YRKKRLEELHAKFDK 72 (122)
Q Consensus 58 klKe~E~EL~~r~Ee 72 (122)
++.+.|..|..+.+.
T Consensus 98 rL~qrE~rL~qREE~ 112 (535)
T PRK00106 98 ELKQIESRLTERATS 112 (535)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 24
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.23 E-value=2.5e+02 Score=21.17 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 42 NMEDMREKTHCRHY-ELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQ 103 (122)
Q Consensus 42 ~EeemrqvF~~kV~-E~klKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~ 103 (122)
.=..|+.+|..|+. -...-.....|..+..++....+.-...++.-...+..|+..|+..++
T Consensus 107 y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~ 169 (200)
T cd07624 107 YSDAVKDVLKRRDQFQIEYELSVEELNKKRLELLKEVEKLQDKLECANADLKADLERWKQNKR 169 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666665 333444444566666556555555555666666677788888887774
No 25
>KOG0728|consensus
Probab=28.13 E-value=3.6e+02 Score=22.71 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 45 DMREKTHCRHYE--LYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFN 99 (122)
Q Consensus 45 emrqvF~~kV~E--~klKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e 99 (122)
.+++.|.+++.+ ..+.++-+. -+.+++++.+|-.+.|-|-+++.-++
T Consensus 17 ~~~~y~~~ki~~~~~~v~~kt~n--------lrrleaqrneln~kvr~lreel~~lq 65 (404)
T KOG0728|consen 17 GLRQYYLQKIEELQLQVAEKTQN--------LRRLEAQRNELNAKVRLLREELQLLQ 65 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 399999999884 333333222 23456666666666666666665554
No 26
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.68 E-value=3.8e+02 Score=23.80 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8482 75 KDHADEKKRLEDARKKLEEDL 95 (122)
Q Consensus 75 ~~l~~~~~~lEek~r~LEee~ 95 (122)
..+++...+++.....|...+
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666665
No 27
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.38 E-value=4.3e+02 Score=23.29 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=35.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8482 46 MREKTHCRHY-ELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQMATM 108 (122)
Q Consensus 46 mrqvF~~kV~-E~klKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~~~~~~ 108 (122)
|.+.+..-+. |..-+..=.+|...+.++++.+.+..-.+=.-...||..+..++..-..|+.+
T Consensus 124 i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l 187 (569)
T PRK04778 124 ILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVEL 187 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444344 55556666667777777777777764444444455555555555555555553
No 28
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=25.57 E-value=2.9e+02 Score=20.65 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=4.7
Q ss_pred CcCCCcccC
Q psy8482 113 TLTLGKSKK 121 (122)
Q Consensus 113 t~~~~k~~~ 121 (122)
.|++++++.
T Consensus 135 iLgK~~sRp 143 (149)
T PF15346_consen 135 ILGKNNSRP 143 (149)
T ss_pred HhCCCCCCC
Confidence 345555554
No 29
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.01 E-value=2.7e+02 Score=22.26 Aligned_cols=25 Identities=8% Similarity=0.205 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 77 HADEKKRLEDARKKLEEDLLEFNRR 101 (122)
Q Consensus 77 l~~~~~~lEek~r~LEee~~~~e~~ 101 (122)
|+++.+.....+..|..++..+.++
T Consensus 98 LE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 98 LEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444
No 30
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.15 E-value=5.3e+02 Score=22.80 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=42.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8482 45 DMREKTHCRHY-ELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQMATMS 109 (122)
Q Consensus 45 emrqvF~~kV~-E~klKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~~~~~~~ 109 (122)
.+.+.+..-+. |..-+..-.+|...+.++++.+.+..-.+-.-...|+..+..++..-..|+.+.
T Consensus 119 ~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt 184 (560)
T PF06160_consen 119 EILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELT 184 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 666666667788888888888888766555556666666666666665555543
No 31
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.99 E-value=5.4e+02 Score=23.90 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=8.2
Q ss_pred cccchhhhhhhh
Q psy8482 2 LIRTNMEDMREK 13 (122)
Q Consensus 2 Li~t~~~dL~~~ 13 (122)
+|-||..+|+..
T Consensus 439 iitTH~~eL~~~ 450 (771)
T TIGR01069 439 LITTHYKELKAL 450 (771)
T ss_pred EEECChHHHHHH
Confidence 566888887653
No 32
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=22.46 E-value=3.7e+02 Score=20.75 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q psy8482 56 ELYRKKRLEELHAKFDKLKKDHADEK--------KRLEDARKKLEEDLLEFNRRK 102 (122)
Q Consensus 56 E~klKe~E~EL~~r~Eelk~~l~~~~--------~~lEek~r~LEee~~~~e~~k 102 (122)
+.........|..++.+....+.+.. ++++++++.|..++..|-...
T Consensus 118 ~~~qekrqekL~~kh~e~lq~i~ee~~k~q~~l~~eye~k~~~L~~Ei~~~v~~~ 172 (185)
T PF08703_consen 118 EEKQEKRQEKLEEKHEEVLQQIEEEEKKLQAELEQEYEEKMKRLPQEIRESVQEC 172 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44555555566666666666655543 345566666666665554433
No 33
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=22.12 E-value=3.1e+02 Score=19.82 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 44 EDMREKTHCRHY--ELYRKKRLEELHAKFDKLK----KDHADEKKRLEDARKKLEEDLLEFNRRKQQ 104 (122)
Q Consensus 44 eemrqvF~~kV~--E~klKe~E~EL~~r~Eelk----~~l~~~~~~lEek~r~LEee~~~~e~~k~~ 104 (122)
++|.+.|...+. +..+.+.+-+.++-..+.. .....-...++.++..+.+.++.+.....+
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~q 85 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQ 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666 7777777777666655554 333333334444444444444444444433
No 34
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.74 E-value=4.5e+02 Score=21.47 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8482 58 YRKKRLEELHAKFDKLKKDHAD 79 (122)
Q Consensus 58 klKe~E~EL~~r~Eelk~~l~~ 79 (122)
.+|++.++++..-+++...++.
T Consensus 139 e~kekl~E~~~EkeeL~~elee 160 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEE 160 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666676666666665554
No 35
>KOG1161|consensus
Probab=20.82 E-value=4.5e+02 Score=21.99 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=38.6
Q ss_pred h-hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 41 T-NMEDMREKTHCRHY-ELYRKKRLEELHAKFDK--LKKDHADEKKRLEDARKKLEEDLLEFN 99 (122)
Q Consensus 41 ~-~EeemrqvF~~kV~-E~klKe~E~EL~~r~Ee--lk~~l~~~~~~lEek~r~LEee~~~~e 99 (122)
. .+.+++.|+.-.|. +..+-.+.++|+.++.+ ....-...+..+.+..+.+-.++..|.
T Consensus 51 ~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~~~~~~~~~~~~~~lr~~l~~~~~em~~L~ 113 (310)
T KOG1161|consen 51 RLLDAELEKVNGFQLEKESELIIRLKELEEKIDALSLEPPSAEEMKELREELVDFHGEMVLLE 113 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 5 99999999999888 88888888888888863 222222333444444444444444443
Done!