Query psy8482
Match_columns 122
No_of_seqs 134 out of 380
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 20:01:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qag_B Septin-6, protein NEDD5 99.9 2.1E-26 7.2E-31 192.7 0.4 122 1-122 277-427 (427)
2 2qag_C Septin-7; cell cycle, c 99.9 1.8E-24 6.2E-29 179.9 -0.0 109 1-109 269-403 (418)
3 2qnr_A Septin-2, protein NEDD5 98.8 5.7E-10 2E-14 88.0 0.3 30 1-31 260-289 (301)
4 2qag_A Septin-2, protein NEDD5 98.7 1.6E-09 5.3E-14 87.6 -0.6 30 1-31 279-308 (361)
5 2qag_C Septin-7; cell cycle, c 88.1 0.095 3.3E-06 43.2 0.0 56 56-111 343-398 (418)
6 2qag_B Septin-6, protein NEDD5 87.7 0.1 3.5E-06 43.3 0.0 57 56-112 347-403 (427)
7 1lq7_A Alpha3W; three helix bu 70.8 15 0.00053 22.4 5.9 34 64-97 28-66 (67)
8 2oqq_A Transcription factor HY 31.7 75 0.0026 18.1 4.8 27 77-103 8-34 (42)
9 3s9g_A Protein hexim1; cyclin 29.7 1.3E+02 0.0044 20.3 11.4 16 16-31 16-31 (104)
10 1gmj_A ATPase inhibitor; coile 28.8 1.2E+02 0.0042 19.7 9.3 29 73-101 45-73 (84)
11 3etw_A Adhesin A; antiparallel 20.5 2.1E+02 0.0073 19.5 6.2 38 66-103 69-106 (119)
No 1
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.1e-26 Score=192.71 Aligned_cols=122 Identities=46% Similarity=0.643 Sum_probs=29.6
Q ss_pred CcccchhhhhhhhccccchhHHHHhhhhhhhc--cc----h---------hhhh----hh-hhHHHHHHHHHHHH--HHH
Q psy8482 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEVRD--ML----K---------HRHN----RT-NMEDMREKTHCRHY--ELY 58 (122)
Q Consensus 1 ~Li~t~~~dL~~~T~~~~yE~yR~~~L~~~~~--~~----p---------~~~~----~~-~EeemrqvF~~kV~--E~k 58 (122)
|||+|||+||+++||++||||||+.+|..+|. .+ | .+.+ ++ +|++|+++|.++|+ |++
T Consensus 277 ~l~~t~~~dL~~~T~~~~YE~yR~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~~v~~~e~~ 356 (427)
T 2qag_B 277 MLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAE 356 (427)
T ss_dssp HHHHTSTTHHHHHHHHHTTHHHHHHHHHHHC-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999998761 11 1 1222 45 99999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------CCcCCCcccCC
Q psy8482 59 RKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQMATMSGS-------HTLTLGKSKKK 122 (122)
Q Consensus 59 lKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~~~~~~~~~-------~t~~~~k~~~~ 122 (122)
|+++|++|++++++|+..+.++.+.||+++++|++++.+|++.+++|+.++++ .|++++|+|||
T Consensus 357 l~~~e~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (427)
T 2qag_B 357 LKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKKN 427 (427)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999986655 25677888775
No 2
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.8e-24 Score=179.94 Aligned_cols=109 Identities=25% Similarity=0.416 Sum_probs=27.2
Q ss_pred CcccchhhhhhhhccccchhHHHHhhhhhh---h--c--c------ch------hhhh----hh-hhHHHHHHHHHHHH-
Q psy8482 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEV---R--D--M------LK------HRHN----RT-NMEDMREKTHCRHY- 55 (122)
Q Consensus 1 ~Li~t~~~dL~~~T~~~~yE~yR~~~L~~~---~--~--~------~p------~~~~----~~-~EeemrqvF~~kV~- 55 (122)
|||+|||+||+++||++||||||+.+|..+ + + . +| ++.+ ++ +|++|+++|+++|+
T Consensus 269 ~Li~~~~~dl~~~T~~~~Ye~yR~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~~v~~ 348 (418)
T 2qag_C 269 MLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKE 348 (418)
T ss_dssp HHHTTSHHHHHHHHHHHTHHHHHHHHCC----------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCccccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999987 3 1 1 13 1222 45 99999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8482 56 -ELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQMATMS 109 (122)
Q Consensus 56 -E~klKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~~~~~~~ 109 (122)
|++|+++|++|+++++++++.|+++..+|++++++|+.++++|++.+++++...
T Consensus 349 ~~~~~~~~e~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (418)
T 2qag_C 349 KVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQN 403 (418)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 999999999999999999999999999999999999999999999998886653
No 3
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.80 E-value=5.7e-10 Score=88.04 Aligned_cols=30 Identities=47% Similarity=0.697 Sum_probs=27.0
Q ss_pred CcccchhhhhhhhccccchhHHHHhhhhhhh
Q psy8482 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEVR 31 (122)
Q Consensus 1 ~Li~t~~~dL~~~T~~~~yE~yR~~~L~~~~ 31 (122)
||| |||+||+++||++|||+||+.+|..+|
T Consensus 260 ~l~-~~~~~l~~~t~~~~ye~~r~~~l~~~~ 289 (301)
T 2qnr_A 260 MLI-THMQDLQEVTQDLHYENFRSERLKRGG 289 (301)
T ss_dssp HHH-HTHHHHHHHHHHTHHHHHHHHHHHC--
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 588 999999999999999999999999887
No 4
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.69 E-value=1.6e-09 Score=87.62 Aligned_cols=30 Identities=47% Similarity=0.697 Sum_probs=25.1
Q ss_pred CcccchhhhhhhhccccchhHHHHhhhhhhh
Q psy8482 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEVR 31 (122)
Q Consensus 1 ~Li~t~~~dL~~~T~~~~yE~yR~~~L~~~~ 31 (122)
||| |||+||++.||++|||+||+.+|..++
T Consensus 279 ~l~-~~~~dl~~~t~~~~ye~yr~~~l~~~~ 308 (361)
T 2qag_A 279 MLI-THMQDLQEVTQDLHYENFRSERLKRGG 308 (361)
T ss_dssp HHH-HCCGGGTHHHHTTTHHHHHTTTC----
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578 999999999999999999999999877
No 5
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.07 E-value=0.095 Score=43.15 Aligned_cols=56 Identities=27% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy8482 56 ELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQMATMSGS 111 (122)
Q Consensus 56 E~klKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~~~~~~~~~ 111 (122)
++++++.|+.|.+...++...+.+..+.|+++.+.|++.+..|+.+.+.|+...++
T Consensus 343 ~~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 398 (418)
T 2qag_C 343 EMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRI 398 (418)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56777888888888889999999999999999999999999999999988886543
No 6
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.70 E-value=0.1 Score=43.34 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy8482 56 ELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQMATMSGSH 112 (122)
Q Consensus 56 E~klKe~E~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~~~~~~~~~~ 112 (122)
.+++++.|++|.+...++...++.....++++++.||+.+..|+.+++.|+...+..
T Consensus 347 ~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~ 403 (427)
T 2qag_B 347 VQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAA 403 (427)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888888888888999999999999999999998888765443
No 7
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=70.79 E-value=15 Score=22.41 Aligned_cols=34 Identities=41% Similarity=0.620 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q psy8482 64 EELHAKFDKLKKDHADE-----KKRLEDARKKLEEDLLE 97 (122)
Q Consensus 64 ~EL~~r~Eelk~~l~~~-----~~~lEek~r~LEee~~~ 97 (122)
.+|..+++++++..++. .++.++..+.|++++..
T Consensus 28 eelkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 28 EELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 45777888888777753 56777788888877754
No 8
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=31.66 E-value=75 Score=18.12 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 77 HADEKKRLEDARKKLEEDLLEFNRRKQ 103 (122)
Q Consensus 77 l~~~~~~lEek~r~LEee~~~~e~~k~ 103 (122)
+++..+.++....+||+.+..++.+.+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444455555666666666666666553
No 9
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=29.67 E-value=1.3e+02 Score=20.26 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=14.2
Q ss_pred ccchhHHHHhhhhhhh
Q psy8482 16 CRHYELYRKKRLEEVR 31 (122)
Q Consensus 16 ~~~yE~yR~~~L~~~~ 31 (122)
+.-||.|+++.|..|+
T Consensus 16 Se~YE~~h~ErL~~mS 31 (104)
T 3s9g_A 16 SETYERYHTESLQNMS 31 (104)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4569999999999988
No 10
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.81 E-value=1.2e+02 Score=19.66 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 73 LKKDHADEKKRLEDARKKLEEDLLEFNRR 101 (122)
Q Consensus 73 lk~~l~~~~~~lEek~r~LEee~~~~e~~ 101 (122)
|+..+.+++....+++..|++.+......
T Consensus 45 LKkkl~~el~~h~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 45 LKKHKENEISHHAKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555544433
No 11
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.51 E-value=2.1e+02 Score=19.54 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 66 LHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQ 103 (122)
Q Consensus 66 L~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~ 103 (122)
....+..+-..+...+..|+..++..+.-+.+|+.-++
T Consensus 69 yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik~ 106 (119)
T 3etw_A 69 YKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQA 106 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777788888888888888888888888887774
Done!