Query psy8482
Match_columns 122
No_of_seqs 134 out of 380
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 20:01:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8482.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8482hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f66c1 a.2.17.3 (C:142-206) V 17.2 92 0.0067 17.7 4.1 24 72-95 8-31 (65)
2 d1x4ta1 a.2.15.1 (A:7-86) Pre- 14.8 99 0.0072 18.3 3.8 23 85-107 45-67 (80)
3 d1bh9b_ a.22.1.3 (B:) TAF(II)2 8.8 36 0.0026 20.7 0.1 12 18-29 8-19 (89)
4 d1s35a2 a.7.1.1 (A:1169-1273) 8.0 1.9E+02 0.014 16.0 4.4 27 58-84 76-102 (105)
5 d1cuna2 a.7.1.1 (A:116-219) Sp 5.8 2.5E+02 0.018 15.4 5.2 26 58-83 73-98 (104)
6 d2p06a1 a.204.1.3 (A:1-84) Hyp 5.7 1.3E+02 0.0093 17.4 1.5 24 5-28 46-69 (84)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 5.6 3.1E+02 0.023 16.2 7.0 42 64-109 4-45 (133)
8 d1u5pa1 a.7.1.1 (A:1662-1771) 5.2 2.8E+02 0.021 15.2 5.7 30 58-87 78-107 (110)
9 d3bzka2 a.60.2.6 (A:564-636) T 4.8 99 0.0072 17.6 0.6 9 16-24 8-16 (73)
10 d1u5pa2 a.7.1.1 (A:1772-1872) 4.6 3E+02 0.022 14.8 3.7 29 57-85 73-101 (101)
No 1
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.23 E-value=92 Score=17.74 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 72 KLKKDHADEKKRLEDARKKLEEDL 95 (122)
Q Consensus 72 elk~~l~~~~~~lEek~r~LEee~ 95 (122)
.++..++++.+.++++-+.|+...
T Consensus 8 ~Lk~kL~~~~~~ld~~s~~l~~~~ 31 (65)
T d2f66c1 8 ALKKKLEQNTKKLDEESSQLETTT 31 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467777888888888888876543
No 2
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.83 E-value=99 Score=18.34 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy8482 85 EDARKKLEEDLLEFNRRKQQMAT 107 (122)
Q Consensus 85 Eek~r~LEee~~~~e~~k~~~~~ 107 (122)
|-++|.|-.+++.+-.++..|+.
T Consensus 45 e~~IRdLNDeINkL~reK~~WE~ 67 (80)
T d1x4ta1 45 EFRIRDLNDEINKLLREKGHWEV 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777788888888888777776
No 3
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.78 E-value=36 Score=20.73 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=10.0
Q ss_pred chhHHHHhhhhh
Q psy8482 18 HYELYRKKRLEE 29 (122)
Q Consensus 18 ~yE~yR~~~L~~ 29 (122)
-||.||+..|..
T Consensus 8 RyE~fRRs~~~K 19 (89)
T d1bh9b_ 8 RYEMYRRSAFPK 19 (89)
T ss_dssp HHHHHHHCCCCH
T ss_pred HHHHHHHhhCCH
Confidence 499999988765
No 4
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.98 E-value=1.9e+02 Score=16.01 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 58 YRKKRLEELHAKFDKLKKDHADEKKRL 84 (122)
Q Consensus 58 klKe~E~EL~~r~Eelk~~l~~~~~~l 84 (122)
.++.+-..|..++..+.....+....|
T Consensus 76 ~I~~~~~~l~~rw~~l~~~~~~r~~~L 102 (105)
T d1s35a2 76 KIKEKVQLIEDRHRKNNEKAQEASVLL 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555556666666655554443333
No 5
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.78 E-value=2.5e+02 Score=15.36 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 58 YRKKRLEELHAKFDKLKKDHADEKKR 83 (122)
Q Consensus 58 klKe~E~EL~~r~Eelk~~l~~~~~~ 83 (122)
.++.+...|..++..+..........
T Consensus 73 ~I~~~~~~l~~~w~~L~~~~~~R~~~ 98 (104)
T d1cuna2 73 NITAKMKGLKGKVSDLEKAAAQRKAK 98 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444443333
No 6
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.66 E-value=1.3e+02 Score=17.40 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=19.7
Q ss_pred chhhhhhhhccccchhHHHHhhhh
Q psy8482 5 TNMEDMREKTHCRHYELYRKKRLE 28 (122)
Q Consensus 5 t~~~dL~~~T~~~~yE~yR~~~L~ 28 (122)
..|.+|++......+||.|...|-
T Consensus 46 eemdelreavekedwenlrdelld 69 (84)
T d2p06a1 46 EEMDELREAVEKEDWENLRDELLD 69 (84)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889998888899999988764
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.57 E-value=3.1e+02 Score=16.15 Aligned_cols=42 Identities=7% Similarity=0.235 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8482 64 EELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQMATMS 109 (122)
Q Consensus 64 ~EL~~r~Eelk~~l~~~~~~lEek~r~LEee~~~~e~~k~~~~~~~ 109 (122)
++|....+.+.. +...+..+...|...+..+..-+...+.+.
T Consensus 4 ~eL~~~~~~l~~----~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~ 45 (133)
T d1fxkc_ 4 AEIVAQLNIYQS----QVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444443 344467778888888888887776666654
No 8
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.17 E-value=2.8e+02 Score=15.21 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 58 YRKKRLEELHAKFDKLKKDHADEKKRLEDA 87 (122)
Q Consensus 58 klKe~E~EL~~r~Eelk~~l~~~~~~lEek 87 (122)
.++.+-..|..++..+..........|++.
T Consensus 78 ~i~~~~~~l~~~w~~l~~~~~~R~~~L~ea 107 (110)
T d1u5pa1 78 QVKDKRETINGRFQRIKSMAAARRAKLNES 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556666666665555554444443
No 9
>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.78 E-value=99 Score=17.58 Aligned_cols=9 Identities=33% Similarity=0.316 Sum_probs=7.0
Q ss_pred ccchhHHHH
Q psy8482 16 CRHYELYRK 24 (122)
Q Consensus 16 ~~~yE~yR~ 24 (122)
.||.|+|=.
T Consensus 8 ~IHPESY~~ 16 (73)
T d3bzka2 8 AVHPETYPL 16 (73)
T ss_dssp SCCGGGHHH
T ss_pred CCCCCchHH
Confidence 689999963
No 10
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.59 E-value=3e+02 Score=14.75 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8482 57 LYRKKRLEELHAKFDKLKKDHADEKKRLE 85 (122)
Q Consensus 57 ~klKe~E~EL~~r~Eelk~~l~~~~~~lE 85 (122)
..++....+|..++..+..........||
T Consensus 73 ~~I~~~~~~l~~~w~~L~~~~~~R~~~Le 101 (101)
T d1u5pa2 73 EEIQQRLAQFVDHWKELKQLAAARGQRLE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Done!