RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8482
(122 letters)
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 59.8 bits (144), Expect = 8e-12
Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 27/149 (18%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEV--------------------RDMLKHRHNR 40
MLIR NMED+RE+TH RHYELYR+ +LEE+ + +
Sbjct: 277 MLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQ 336
Query: 41 TNMEDMREK--THCRHYELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEF 98
E+MR+ + E K+ +ELH KFD+LKK H DEKK+LED +K L++++ F
Sbjct: 337 KKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAF 396
Query: 99 NRRK-----QQMATMSGSHTLTLGKSKKK 122
+RK Q + TL + K+K
Sbjct: 397 KQRKTAAELLQSQGSQAGGSQTLKRDKEK 425
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 57.5 bits (138), Expect = 5e-11
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 26/148 (17%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRLEE-----VRDMLKHRHNRTNMEDMREKTHCRHY 55
MLIRT+M+D+++ T+ HYE YR ++L V + + E+ H
Sbjct: 269 MLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHV 328
Query: 56 ELYRKKRLE---------------------ELHAKFDKLKKDHADEKKRLEDARKKLEED 94
+K +E EL + +++KK+ + K LE+ R++ E++
Sbjct: 329 AKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDE 388
Query: 95 LLEFNRRKQQMATMSGSHTLTLGKSKKK 122
+ +++ + + S TL K K K
Sbjct: 389 KANWEAQQRILEQQNSSRTLEKNKKKGK 416
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 45.2 bits (106), Expect = 7e-07
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 41 TNMEDMREKTHCRHYELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNR 100
T+M+D++E T HYE +R +RL+ K + + E ++++E +
Sbjct: 282 THMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQA 341
Query: 101 RKQQM 105
+ Q
Sbjct: 342 QMQMQ 346
Score = 36.0 bits (82), Expect = 0.001
Identities = 13/83 (15%), Positives = 35/83 (42%)
Query: 2 LIRTNMEDMREKTHCRHYELYRKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKK 61
++ T+M+D++E T HYE +R +RL+ +++ + + ++ R + +
Sbjct: 279 MLITHMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIAR 338
Query: 62 RLEELHAKFDKLKKDHADEKKRL 84
++ + D +
Sbjct: 339 MQAQMQMQMQGGDGDGGALGHHV 361
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 41.7 bits (97), Expect = 1e-05
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRL 27
MLIRT+M+D+++ T+ HYE YR ++L
Sbjct: 246 MLIRTHMQDLKDVTNNVHYENYRSRKL 272
Score = 37.4 bits (86), Expect = 4e-04
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 40 RTNMEDMREKTHCRHYELYRKKRL 63
RT+M+D+++ T+ HYE YR ++L
Sbjct: 249 RTHMQDLKDVTNNVHYENYRSRKL 272
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 37.1 bits (85), Expect = 6e-04
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 41 TNMEDMREKTHCRHYELYRKKRLEELHAKFDKLKKD 76
T+M+D++E T HYE +R +RL+ K + +
Sbjct: 263 THMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMN 298
Score = 36.7 bits (84), Expect = 8e-04
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 2 LIRTNMEDMREKTHCRHYELYRKKRLEE 29
++ T+M+D++E T HYE +R +RL+
Sbjct: 260 MLITHMQDLQEVTQDLHYENFRSERLKR 287
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.9 bits (75), Expect = 0.020
Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRK 60
L RT + + + E + EE + + T E E R +K
Sbjct: 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAET--ELYAEAEEMRVRLAAKK 922
Query: 61 KRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQMATM 108
+ LEE+ + + ++ + ++L+ +KK+++ +L+ + ++
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Score = 27.5 bits (61), Expect = 1.2
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 5 TNMEDMREKTHCRHYELYRKKRLEEVRDMLK----HRHNRTNMEDMREKTHCRHYELYRK 60
+ + + + K+ EE++ L + N + +L +
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL--Q 1129
Query: 61 KRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQ 104
+ LE A +K +K D + LE + +LE+ L +++
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173
Score = 26.7 bits (59), Expect = 2.0
Identities = 13/99 (13%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 24 KKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKKRLEELHAKFDKLKKDHADEKKR 83
KK++++ L+ + + + + + K++E+ + E+K
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG-KIKKMEDDILIMEDQNNKLTKERKL 1008
Query: 84 LEDARKKLEEDLLEFNRRKQQMATMSGSHTLTLGKSKKK 122
LE+ L +L E + + + + H + + + +
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047
Score = 25.6 bits (56), Expect = 5.7
Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 23 RKKRLEEVRDMLKHRHN--RTNMEDMREKTHCRHYELYR-KKRLEELHAKFDKLKKDHAD 79
K++LE L + + + +++ + + EL RLE+ ++ + K +
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120
Query: 80 EKKRLEDARKKLEEDLLEFNRRKQQMATMS 109
+ + D ++ LE + N+ ++Q +S
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLS 1150
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.026
Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 50/156 (32%)
Query: 2 LIRTNMEDMREKTHCRHYELYRKKRL--EEVRDMLK--HRHNRTN--------------- 42
++ + + C+ + K L EE+ ++ + T
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 43 --MEDMRE----------KTHCR----HYELYRKKRLEELHAKFDKLKKDHADEKKRLED 86
+E++ KT R +Y ++R + L+ K + +
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVSRLQPYLK 139
Query: 87 ARKKLEEDLLEFNRRKQQMAT---MSGSHTLTLGKS 119
R+ L E R + + GS GK+
Sbjct: 140 LRQALLEL------RPAKNVLIDGVLGS-----GKT 164
Score = 32.1 bits (72), Expect = 0.033
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 21 LYRKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKKRLE-----ELHAKF----- 70
++ +V ++ H + +E +++ +Y + +++ LH
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 71 DKLKKDHADEKKRLED 86
D D D
Sbjct: 455 IPKTFDSDDLIPPYLD 470
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 32.1 bits (72), Expect = 0.034
Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 1 MLIRTNMEDMREKTHCRHYELYRKKRLEEVRDM----LKHRHNRTNMEDMREKTHCRHYE 56
++ +++D+R++ ++ + L++ D LK + + ++ + R
Sbjct: 16 QMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVT-RQKM 74
Query: 57 LYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQMATMSGSHTLTL 116
++ L L + + A +E +K L ++ L +R+QQ+A + G + L
Sbjct: 75 QQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNICL 134
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 31.8 bits (71), Expect = 0.042
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 24 KKRLEEVRDMLKHRHNRTN--MEDMREK-THCRHYELYRKKRLEELHAKFDKLKKDHADE 80
+ L + K + T +E MR + + K+ E+L ++ + L++ ++
Sbjct: 73 RDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ 132
Query: 81 KKRLEDARKKLEEDLLEFNR 100
+R+ +K + + L++ R
Sbjct: 133 VQRINLLQKNVRDQLVDMKR 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.078
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 30/91 (32%)
Query: 57 LYR-KKRLEELHA--KFDKLKKDHADEKKR----------------LEDARKKLEEDL-- 95
LY L + A D+ + ++ K + L A + +DL
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 96 --LEFNRRKQQMA-----TMSGSHTLTLGKS 119
+ FN + + T GS L S
Sbjct: 446 NNVSFN--AKDIQIPVYDTFDGSDLRVLSGS 474
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.1 bits (68), Expect = 0.15
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 26 RLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKKRLEELHAKFDKLKKDHADE-KKRL 84
+ + + ++ ++ E + + + K EEL+ + K+ + +K+L
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061
Query: 85 EDARKKLEEDLLEFNRRKQQ 104
+ K+LE D L R + Q
Sbjct: 1062 VEETKQLELD-LNDERLRYQ 1080
Score = 28.9 bits (65), Expect = 0.38
Identities = 17/86 (19%), Positives = 31/86 (36%)
Query: 20 ELYRKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKKRLEELHAKFDKLKKDHAD 79
L K E+ + R+++E +R R L+E AK K
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005
Query: 80 EKKRLEDARKKLEEDLLEFNRRKQQM 105
EKK +E+ K + + + ++
Sbjct: 1006 EKKTIEEWADKYKHETEQLVSELKEQ 1031
Score = 28.5 bits (64), Expect = 0.48
Identities = 18/93 (19%), Positives = 40/93 (43%)
Query: 3 IRTNMEDMREKTHCRHYELYRKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKKR 62
+R+++E +R R L+E L+ ++T E + Y+ ++
Sbjct: 965 LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024
Query: 63 LEELHAKFDKLKKDHADEKKRLEDARKKLEEDL 95
+ EL + LK + + +R+ D K++ E +
Sbjct: 1025 VSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057
Score = 28.2 bits (63), Expect = 0.82
Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 18/139 (12%)
Query: 2 LIRTNMEDMREKTHCRHYELYRKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRK- 60
++R + MR+ T L + + ML+ + + +R HY K
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 61 -----------------KRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQ 103
K+L+ ++ KK H + ++ ++K++E E+ +
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949
Query: 104 QMATMSGSHTLTLGKSKKK 122
+M + +++ K +
Sbjct: 950 KMNNLEITYSTETEKLRSD 968
Score = 27.0 bits (60), Expect = 2.1
Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 22 YRKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKKRLEELHAKFDKLKKDHADEK 81
+K ++E R + +++ +E+ + + E K + L K + L+ ++ E
Sbjct: 906 LKKLKIEA-RSVERYKKLHIGLENKIMQLQRKIDEQ--NKEYKSLLEKMNNLEITYSTET 962
Query: 82 KRLEDARKKLEEDLLEFNRRKQQMA 106
++L + E L +
Sbjct: 963 EKL----RSDVERLRMSEEEAKNAT 983
Score = 25.5 bits (56), Expect = 5.9
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 23 RKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKKRLEELHAKFDKLKKDHADEKK 82
LE L+ + + N E + E+ E+L + ++L+ +E K
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE-EEAK 980
Query: 83 RLEDARKKLEEDLLEFNRRKQQ 104
+ L+E++ + + Q
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQ 1002
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.16
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 12/35 (34%)
Query: 80 EK---KRLEDARKKLEED---LLEFNRRKQQMATM 108
EK K+L+ + K +D L ATM
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK------ATM 46
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.20
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 10/47 (21%)
Query: 59 RKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQM 105
++KRL+E D A K ++ R+K ++DL E+N+R+ +
Sbjct: 94 QRKRLQE---------LD-AASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Score = 29.0 bits (64), Expect = 0.29
Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 23 RKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKKRLEELHAKFD-KLKKDHADEK 81
++KRL+E ++ ++ REK KK LEE + + +++K+ + +
Sbjct: 94 QRKRLQE-----LDAASKVMEQEWREKA---------KKDLEEWNQRQSEQVEKNKINNR 139
Query: 82 KRLEDARKKLEEDLL 96
+ ++ + D++
Sbjct: 140 IADKAFYQQPDADII 154
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 29.1 bits (64), Expect = 0.43
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Query: 3 IRTNMEDMREKTHCRHYELYRKKRLEEVRD-MLKHRHNRTNMEDMREKTHCRHYELYRKK 61
+ + + ++++K C +E+ + L++ D K NR + + K+ + +L KK
Sbjct: 142 LDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKK 201
Query: 62 RLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQMATMSGSHTLTL 116
L K ++ + E + L D L +R+QQ A + G L
Sbjct: 202 MYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACL 256
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 0.89
Identities = 15/93 (16%), Positives = 23/93 (24%), Gaps = 26/93 (27%)
Query: 17 RHYELYRKKRLEEVRDMLKHRHNR-TNMEDMREKTHCRHYELYRKKRLEELHAKFDKLKK 75
Y Y K + K HN + K H +
Sbjct: 1469 DRYNEYVAKVSAREKSAYKFFHNGMIYNKLFVSKEHAPY--------------------- 1507
Query: 76 DHADEKKRLEDARKKLEEDL----LEFNRRKQQ 104
E+ D ++ +D L FN + Q
Sbjct: 1508 TDELEEDVYLDPLARVSKDKKSGSLTFNSKNIQ 1540
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 27.9 bits (62), Expect = 0.92
Identities = 9/95 (9%), Positives = 19/95 (20%)
Query: 11 REKTHCRHYELYRKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKKRLEELHAKF 70
+ ++ E K + + E K+ +E +
Sbjct: 156 ITEIISDVFQSKETLEKLEKLLKEKMKKLENEISSGGAGGAGGSLEKKLKEMSDEYNNLD 215
Query: 71 DKLKKDHADEKKRLEDARKKLEEDLLEFNRRKQQM 105
K + LE L +
Sbjct: 216 LLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDIL 250
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 25.5 bits (56), Expect = 5.4
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 54 HYELYRKKRLEELHA-KFDKLKKDHADEK-KRLEDARKKLEEDLLEFNRRKQQMATMSGS 111
Y L+ + +++ A K D ++ + +K + E L F R +
Sbjct: 11 SYPLFLDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREALTVNPAKAC 70
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 25.6 bits (56), Expect = 5.8
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 28 EEVRDMLKHRHNRTN-MEDMREKTHCRHYELYRKKRLEELHAK---FDKLKKDHADEKKR 83
+ V L + H K R + + L+ ++ ++ + +E+
Sbjct: 1862 DAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLH 1921
Query: 84 LEDARKKLEE 93
L KKL +
Sbjct: 1922 LNIGLKKLRD 1931
Score = 25.2 bits (55), Expect = 6.6
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 80 EKKRLEDARKKLEEDLLEFNRRKQQM 105
+ D R+ ++ L F + +
Sbjct: 1598 QPVNRSDLREYVKARLKVFYEEELDV 1623
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 24.8 bits (54), Expect = 8.0
Identities = 14/83 (16%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 23 RKKRLEEVRDMLKHRHNRTNMEDMRE---KTHCRHYELY---RKKRLEELHAKFDKLKKD 76
++++++ + N T+ + + + C+ Y+ + +K + + L KF +K
Sbjct: 196 LPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVKNA 255
Query: 77 HADEKKRLEDARKKLEEDLLEFN 99
+ + L+++L EFN
Sbjct: 256 EKVQTAGIVTPYDILKQELDEFN 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum,
protein transport, biosynthetic protein; HET: GNP;
3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 24.7 bits (54), Expect = 8.8
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 59 RKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLLE 97
++R + D + + L + +K E+ L E
Sbjct: 13 IEERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQE 51
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 24.6 bits (54), Expect = 9.0
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 53 RHYELYRKKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDLL 96
R K+ LE + + KKD ++E + LE +L
Sbjct: 107 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 150
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 24.9 bits (55), Expect = 9.3
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 60 KKRLEELHAKFDKLKKDHADEKKRLEDARKKLEEDL 95
+K++EE K AD+K +E A LE L
Sbjct: 547 RKQVEEAGDKLP------ADDKTAIESALTALETAL 576
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase,
cytoplasm, transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus
aureus} PDB: 2hro_A
Length = 572
Score = 24.8 bits (55), Expect = 9.8
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 64 EELHAKFDKLKKDHADEKKRLEDARKKLEEDL 95
+L ++ D E + A + + +L
Sbjct: 25 PDLTFDKNEKVTDVEGEVAKFNSAIEASKVEL 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.130 0.369
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,924,855
Number of extensions: 112122
Number of successful extensions: 762
Number of sequences better than 10.0: 1
Number of HSP's gapped: 707
Number of HSP's successfully gapped: 256
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)