RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8482
         (122 letters)



>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
           dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 361

 Score = 27.2 bits (59), Expect = 0.59
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 10  MREKTHCRHYELYRKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKKRLEELHAK 69
             +       + YR                RT  E    ++      L + + +    A 
Sbjct: 246 SGKGPILMELQTYR---YHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLAS 302

Query: 70  FDKLKKDHADEKKRLEDARKKLEED 94
            ++LK+   + +K +EDA +    D
Sbjct: 303 VEELKEIDVEVRKEIEDAAQFATAD 327


>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
          protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
          Length = 340

 Score = 25.1 bits (53), Expect = 2.8
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 68 AKFDKLKKDHADEKKRLEDARKKLEEDLLE 97
          ++ D+L+++    K ++ DARK   +  L 
Sbjct: 2  SELDQLRQEAEQLKNQIRDARKACADATLS 31


>d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 285

 Score = 24.6 bits (53), Expect = 4.2
 Identities = 12/128 (9%), Positives = 37/128 (28%), Gaps = 17/128 (13%)

Query: 3   IRTNMEDMREKTHCRHY-------ELYRKKRLEEVRDMLKHRHNRTNMEDMREKT----- 50
           +   +++  +    +          L +  R+ + +  + +         +         
Sbjct: 146 VLKKLDERMKNKDFKAIFYVSNFDYLVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYR 205

Query: 51  HCRHYELYRKKRLEELHAKFDKLKKD-----HADEKKRLEDARKKLEEDLLEFNRRKQQM 105
             R  +   +  +E+L     +  K      HAD +  + +    L +     +     M
Sbjct: 206 KVRGDKKAIEALIEKLREDTPEGSKLRVIGVHADNEAGVVELLNTLRKSYEVVDEIISPM 265

Query: 106 ATMSGSHT 113
             +  +H 
Sbjct: 266 GKVITTHV 273


>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 365

 Score = 24.4 bits (52), Expect = 4.8
 Identities = 11/89 (12%), Positives = 25/89 (28%), Gaps = 3/89 (3%)

Query: 6   NMEDMREKTHCRHYELYRKKRLEEVRDMLKHRHNRTNMEDMREKTHCRHYELYRKKRLEE 65
                 E         +R        D      ++    +  +K        +RK    +
Sbjct: 247 ERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPL---VRFRKFLEAK 303

Query: 66  LHAKFDKLKKDHADEKKRLEDARKKLEED 94
                ++        K+ +++A KK +E 
Sbjct: 304 GLWSEEEENNVIEQAKEEIKEAIKKADET 332


>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
          Length = 169

 Score = 23.3 bits (50), Expect = 8.3
 Identities = 4/27 (14%), Positives = 19/27 (70%)

Query: 81  KKRLEDARKKLEEDLLEFNRRKQQMAT 107
            +++++ +++++ ++LE  +R +Q+  
Sbjct: 136 ARKVKEYKERMKREVLEKAQRLEQIGY 162


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 471,508
Number of extensions: 22785
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 95
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)