Query psy8483
Match_columns 161
No_of_seqs 110 out of 1056
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 20:03:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mzp_A 50S ribosomal protein L 100.0 1.5E-48 5.2E-53 316.1 14.0 158 4-161 2-161 (217)
2 2zkr_5 60S ribosomal protein L 100.0 9.2E-49 3.1E-53 316.5 11.5 155 5-161 1-156 (212)
3 1i2a_A 50S ribosomal protein L 100.0 3.6E-48 1.2E-52 314.4 13.9 155 5-161 1-156 (219)
4 3j21_A 50S ribosomal protein L 100.0 1.1E-49 3.8E-54 322.7 4.6 155 5-161 3-159 (216)
5 3iz5_A 60S ribosomal protein L 100.0 2.2E-50 7.7E-55 326.6 -9.4 160 2-161 1-160 (216)
6 3o58_A L10A, 60S ribosomal pro 100.0 3.3E-50 1.1E-54 325.8 -9.1 160 2-161 1-161 (217)
7 3qoy_A 50S ribosomal protein L 100.0 5.4E-44 1.8E-48 293.6 11.3 146 9-161 22-171 (242)
8 2wwq_5 50S ribosomal protein L 100.0 3E-42 1E-46 282.1 13.0 141 9-161 22-167 (234)
9 3u42_A 50S ribosomal protein L 100.0 2E-42 6.9E-47 282.3 11.2 143 9-161 22-168 (229)
10 3bbo_D Ribosomal protein L1; l 100.0 1.6E-41 5.4E-46 290.0 6.9 142 9-161 136-281 (352)
11 2ftc_A Mitochondrial ribosomal 100.0 3.5E-31 1.2E-35 210.3 13.3 119 31-161 2-125 (189)
12 2ov7_A 50S ribosomal protein L 99.3 1.5E-12 5E-17 98.5 4.6 52 3-58 12-67 (137)
13 3aon_B V-type sodium ATPase su 57.6 9.2 0.00032 27.1 3.4 68 63-138 3-74 (115)
14 2i4r_A V-type ATP synthase sub 55.4 13 0.00043 25.9 3.7 70 62-138 9-84 (102)
15 2d00_A V-type ATP synthase sub 53.4 14 0.00049 25.7 3.8 70 62-138 3-77 (109)
16 2ov6_A V-type ATP synthase sub 49.4 17 0.00059 24.9 3.6 55 64-124 2-62 (101)
17 2qai_A V-type ATP synthase sub 47.5 18 0.00061 25.5 3.5 77 63-153 1-98 (111)
18 3iz5_A 60S ribosomal protein L 41.6 7.8 0.00027 30.3 0.9 28 122-150 117-145 (216)
19 3nbm_A PTS system, lactose-spe 40.1 9.3 0.00032 26.7 1.0 67 60-138 4-83 (108)
20 1e2b_A Enzyme IIB-cellobiose; 39.3 23 0.00078 24.3 3.0 62 63-138 4-78 (106)
21 2l2q_A PTS system, cellobiose- 31.8 27 0.00091 23.8 2.3 51 62-122 4-67 (109)
22 2cok_A Poly [ADP-ribose] polym 24.5 34 0.0012 24.0 1.8 24 73-96 63-86 (113)
23 3czc_A RMPB; alpha/beta sandwi 23.8 86 0.0029 21.2 3.8 47 62-118 18-79 (110)
24 3r8s_I 50S ribosomal protein L 23.1 33 0.0011 25.3 1.6 30 124-155 23-52 (141)
25 1l7b_A DNA ligase; BRCT, autos 22.8 45 0.0016 22.3 2.1 25 71-95 55-79 (92)
26 2k6g_A Replication factor C su 22.8 34 0.0011 23.8 1.5 22 73-94 84-105 (109)
27 1tvm_A PTS system, galactitol- 22.1 41 0.0014 23.1 1.8 46 62-117 21-80 (113)
28 2kav_A Sodium channel protein 21.1 45 0.0015 24.1 1.9 64 62-137 16-83 (129)
29 1nsj_A PRAI, phosphoribosyl an 20.5 15 0.00051 28.4 -0.9 26 63-88 4-29 (205)
30 1v5x_A PRA isomerase, phosphor 20.4 15 0.00052 28.3 -0.9 26 63-88 3-28 (203)
No 1
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=1.5e-48 Score=316.14 Aligned_cols=158 Identities=27% Similarity=0.416 Sum_probs=150.9
Q ss_pred cCChHHHHHHHHHHHhcccccccccceEEEEEEEEeecCCCCC-cceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCCC
Q psy8483 4 KVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKD-KRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANV 82 (161)
Q Consensus 4 ~~~~~~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk~-~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag~ 82 (161)
.+++|++.+||++++++++.++++|+|||||+|+||+|||++| +++||+|.|||+++++.+||||++++++++|+++||
T Consensus 2 ~v~~~~l~~Av~~ll~~~~~~~~kf~etvel~i~LK~~dp~~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa 81 (217)
T 1mzp_A 2 LADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASP 81 (217)
T ss_dssp CCCHHHHHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCC
T ss_pred ccCHHHHHHHHHHHHhhccccccCCCccEEEEEEecCCCCcccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCC
Confidence 3789999999999998866688999999999999999999987 899999999999999999999999999999999999
Q ss_pred C-CCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCCCccHHHHHHHHhccceeeecC
Q psy8483 83 P-FMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161 (161)
Q Consensus 83 ~-vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~~~dl~~~i~~~~~~v~~r~kk 161 (161)
+ +||.+||+++.++++++|+|+.+||+|||++++||+|+++||++||||||||+|++++.|+.+.|++++++++||++|
T Consensus 82 d~~vg~~~L~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~gt~dv~~~v~~~k~~v~~r~~k 161 (217)
T 1mzp_A 82 KVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKD 161 (217)
T ss_dssp SEECCHHHHHHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSSSCCHHHHHHHHTEEEEECSS
T ss_pred CeeeCHHHHHHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCCCccHHHHHHHHhcceEEEecC
Confidence 8 999999988888899999999999999999999999999999999999999999999999999999999999999875
No 2
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.2e-49 Score=316.48 Aligned_cols=155 Identities=22% Similarity=0.403 Sum_probs=146.3
Q ss_pred CChHHHHHHHHHHHhcccccccccceEEEEEEEEeecCCCC-CcceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCCCC
Q psy8483 5 VSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVP 83 (161)
Q Consensus 5 ~~~~~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk-~~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag~~ 83 (161)
|++|++.+||++++++ .+.++|+|||||+|+||||||++ |+++||+|.|||+++++.+||||++++++++|+++||+
T Consensus 1 ~~~~~l~eAv~~llk~--~~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~ 78 (212)
T 2zkr_5 1 MADQEIENAVSRALED--APERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVADD 78 (212)
T ss_dssp -CCTTHHHHHHHHHHT--SCCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHh--cccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCCC
Confidence 4778999999966655 38899999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCCCccHHHHHHHHhccceeeecC
Q psy8483 84 FMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161 (161)
Q Consensus 84 vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~~~dl~~~i~~~~~~v~~r~kk 161 (161)
+||.+||.++.++++++|+|+.+||+|||++++||+|+++||++||||||||+|++++.|+.+.|++++++++||++|
T Consensus 79 ~vg~~~L~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk~gt~dv~~~i~~~k~~v~~r~~k 156 (212)
T 2zkr_5 79 VLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDPDDDVVEVIERMKNTVQLRSGE 156 (212)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECCSSSCCHHHHHHHHTEEECCCSS
T ss_pred EeCHHHHHHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCcccCCCcCHHHHHHHHHcceEEEecC
Confidence 999999987877899999999999999999999999999999999999999999999999999999999999999875
No 3
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=3.6e-48 Score=314.38 Aligned_cols=155 Identities=24% Similarity=0.398 Sum_probs=146.7
Q ss_pred CChHHHHHHHHHHHhcccccccccceEEEEEEEEeecCCCCC-cceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCCCC
Q psy8483 5 VSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKD-KRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVP 83 (161)
Q Consensus 5 ~~~~~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk~-~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag~~ 83 (161)
|++|+|.+||++++++ .+.++|+|||||+|+||||||++| +++||+|.|||+++++.+||||++++++++|+++||+
T Consensus 1 ~~~~~l~eAv~~llk~--~~~~kf~etVel~i~LK~~dp~~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~ 78 (219)
T 1i2a_A 1 MDREALLQAVKEAREL--AKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLT 78 (219)
T ss_dssp CCHHHHHHHHHHHHHH--SCCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHh--cccCCCCceEEEEEEecccCCcccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCCC
Confidence 3589999999976665 488999999999999999999997 8999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCCCccHHHHHHHHhccceeeecC
Q psy8483 84 FMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161 (161)
Q Consensus 84 vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~~~dl~~~i~~~~~~v~~r~kk 161 (161)
+||.+||.++.++++++|+|+.+||+|||++++||+|+++||++||||||||+|++++.|+.++|++++++++||++|
T Consensus 79 ~vg~~~L~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~gt~dv~~~v~~~k~~v~~r~~k 156 (219)
T 1i2a_A 79 VIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRD 156 (219)
T ss_dssp EECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTTCCCHHHHHHHHTEEEEECTT
T ss_pred EEcHHHHHHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccCCCccHHHHHHHHhcceEEEecC
Confidence 999999988888899999999999999999999999999999999999999999999999999999999999999875
No 4
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-49 Score=322.66 Aligned_cols=155 Identities=25% Similarity=0.458 Sum_probs=148.8
Q ss_pred CChHHHHHHHHHHHhcccccccccceEEEEEEEEeecCCCC-CcceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCCCC
Q psy8483 5 VSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVP 83 (161)
Q Consensus 5 ~~~~~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk-~~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag~~ 83 (161)
+++|++.|||..+++. +++++|+|||||+|+|++|||++ |+++||+|.|||+++++.+|||||+++++++|+++||+
T Consensus 3 ~~~~~~~eav~~~~~~--~~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aGad 80 (216)
T 3j21_A 3 FDRQKIVKAVKEAKAR--AKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLD 80 (216)
T ss_dssp SSCSSCCCCTTTTCCC--CCCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHh--CcccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcCCC
Confidence 5788999999999987 46799999999999998899999 99999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCCC-ccHHHHHHHHhccceeeecC
Q psy8483 84 FMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQ-ESMTQKIDEVKGTIKFQMKK 161 (161)
Q Consensus 84 vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~~-~dl~~~i~~~~~~v~~r~kk 161 (161)
++|.++|++++++++++|+++.+||+|||++++||+|+++||++||||||||+|+++| +|+.+.|+++++++.||++|
T Consensus 81 ~vg~e~L~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~gtv~dv~~~v~~~k~~v~~r~~k 159 (216)
T 3j21_A 81 VISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQLKN 159 (216)
T ss_dssp CCCTTHHHHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTTTCBCSHHHHHHHHTCEEEEEEET
T ss_pred ccCHHHHHHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHHHHhhceeecCC
Confidence 9999999999999988999999999999999999999999999999999999999999 99999999999999999875
No 5
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=2.2e-50 Score=326.57 Aligned_cols=160 Identities=67% Similarity=1.063 Sum_probs=153.9
Q ss_pred CCcCChHHHHHHHHHHHhcccccccccceEEEEEEEEeecCCCCCcceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCC
Q psy8483 2 QSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAAN 81 (161)
Q Consensus 2 ~s~~~~~~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk~~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag 81 (161)
||+++++++.+||+.+++.+++++++|+|||||+|+||||||++|+++||+|.|||+++++.+||||++++++++|+++|
T Consensus 1 ~~k~~~~~l~eav~~~~~~~~~~~~kF~etvel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~aG 80 (216)
T 3iz5_A 1 MSKLQSDAVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKMG 80 (216)
T ss_dssp CTGGGSCSSCEECTTTSSSSTTHHHHCCCSSCCEEEEEEECCCCSSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccccccCCCccEEEEEEecccCcccccccceeecCCCCCCCCcEEEEEcChHhHHHHHhcc
Confidence 79999999999999999985557999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCCCccHHHHHHHHhccceeeecC
Q psy8483 82 VPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161 (161)
Q Consensus 82 ~~vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~~~dl~~~i~~~~~~v~~r~kk 161 (161)
|++||.+||++.+++++.+|+|+.+||+|||++++||+||++||+.|||+||||+|++++.|+.+.|+++++++.||++|
T Consensus 81 a~~vg~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~~t~dv~~~v~~~k~~v~~r~~k 160 (216)
T 3iz5_A 81 LDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKK 160 (216)
T ss_dssp HTCSEEECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCSCHHHHHHHHHHTBCCEEECTTS
T ss_pred CCEeCHHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcCCcccHHHHHHHHHhhhheeCCC
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999875
No 6
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=3.3e-50 Score=325.76 Aligned_cols=160 Identities=57% Similarity=0.931 Sum_probs=151.0
Q ss_pred CCcCChHHHHHHHHHHHhccc-ccccccceEEEEEEEEeecCCCCCcceeeeEEcCCCCCCCcEEEEecCcccHHHHHHC
Q psy8483 2 QSKVSRDTLYECVNGVLNNAK-VNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAA 80 (161)
Q Consensus 2 ~s~~~~~~~~~av~~~~~~~~-~~~~~F~esv~l~v~lk~id~kk~~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~a 80 (161)
||+++++++++||++++++++ .++++|+|||||+|+||||||++|+++||+|.|||+++++.+||||++++++++|+++
T Consensus 1 ~sk~~~~~~~~av~~~l~~~~~~~~~kf~etVel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~a 80 (217)
T 3o58_A 1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSC 80 (217)
T ss_dssp ---CCSTTHHHHTTSSSSCCSSSSCCSSCCCCCCCCCSCCSCSSSSSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTT
T ss_pred CCccCHHHHHHHHHHHHHhcccccccCCCccEEEEEEecccCCCCCCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHc
Confidence 799999999999999998853 3789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCCCccHHHHHHHHhccceeeec
Q psy8483 81 NVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMK 160 (161)
Q Consensus 81 g~~vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~~~dl~~~i~~~~~~v~~r~k 160 (161)
||++||.+||++.+++++.+|+|+.+||+|||++++||+||++||+.|||+||||+|++.+.|+.+.|+++++++.||++
T Consensus 81 Ga~~vg~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~~vt~dv~~~v~~~k~~v~~r~~ 160 (217)
T 3o58_A 81 GVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLK 160 (217)
T ss_dssp TCCCCCSTTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCSCTTTCSSSGGGGTTSCCSCCCC
T ss_pred CCCEeCHHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCcCCchhHHHHHHHHhceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy8483 161 K 161 (161)
Q Consensus 161 k 161 (161)
|
T Consensus 161 k 161 (217)
T 3o58_A 161 K 161 (217)
T ss_dssp S
T ss_pred C
Confidence 5
No 7
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=5.4e-44 Score=293.60 Aligned_cols=146 Identities=25% Similarity=0.396 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhcccccccccceEEEEEEEEeecCCCC-CcceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCCCCCCCH
Q psy8483 9 TLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDV 87 (161)
Q Consensus 9 ~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk-~~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag~~vvg~ 87 (161)
.+.|||..+++.+..++|+|+||||++|+| ||||++ |+++||+|.|||++|++.+|||||+++++++|+++||++||.
T Consensus 22 ~l~eAi~~~k~~~~~~~rkF~etVel~i~L-~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa~~~~~~eAk~aGad~vg~ 100 (242)
T 3qoy_A 22 TLEEAVDLLKKMEEVLQRRFDETVELAMRL-NVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVGG 100 (242)
T ss_dssp CHHHHHHHHHHHHHHHCCSSCCEEEEEEEE-SCCTTSGGGCCEEEEECSCCCSSCCCEEEECCHHHHHHHHHTTCSEEES
T ss_pred CHHHHHHHHHhhcccccCCCCCcEEEEEEe-ccCCCCCCCccceEecCCCCCCCCcEEEEEcCHHHHHHHHHcCCCEECc
Confidence 578999999987545678999999999999 899999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCCC--ccHHHHHHHHhc-cceeeecC
Q psy8483 88 EALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSHQ--ESMTQKIDEVKG-TIKFQMKK 161 (161)
Q Consensus 88 ~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~~--~dl~~~i~~~~~-~v~~r~kk 161 (161)
+||++.. .++.+.+||+|||+|++||+|++ ||++||||||||+|+++| +|+.+.|+++++ +++||++|
T Consensus 101 ~dLi~ki-----~k~g~~~fD~~iAtpd~m~~l~~-LGriLGPrGlmP~pk~gTvt~dv~~~V~~~k~G~v~fr~~k 171 (242)
T 3qoy_A 101 DELINKI-----LKEEWTDFDVAIATPEMMPKVAK-LGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDK 171 (242)
T ss_dssp HHHHHHH-----HHHTCCCCSEEEECTTTHHHHGG-GHHHHGGGTCSCCGGGTCBCSCHHHHHHHHHTTEEEEECCT
T ss_pred HHHHHHH-----HhCCCccCCEEEECHHHHHHHHH-HhHHhccccCCCcccCCccchhHHHHHHHHhcCcEEEEecC
Confidence 9998532 02346899999999999999999 999999999999999985 999999999998 69999875
No 8
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=3e-42 Score=282.10 Aligned_cols=141 Identities=20% Similarity=0.386 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhcccccccccceEEEEEEEEeecCCCC-CcceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCCCCCCCH
Q psy8483 9 TLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDV 87 (161)
Q Consensus 9 ~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk-~~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag~~vvg~ 87 (161)
.+.|||..+++. +.++|+||||++|+| ||||++ |+++||+|.|||+++++.+||||++++++++|+++||++||.
T Consensus 22 ~~~eAv~~lk~~---~~~kF~etvel~i~L-~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~~~~~Ak~aGad~vg~ 97 (234)
T 2wwq_5 22 DINEAIALLKEL---ATAKFVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGM 97 (234)
T ss_dssp CHHHHHHHHHHT---CCCSSCCEEEEEEEE-CSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSSCHHHHHHHTCSEECS
T ss_pred CHHHHHHHHHHh---ccCCCCceEEEEEEE-CCCCcccCcccceEEeCCCCCCCCcEEEEEcCchhHHHHHHcCCCEEcH
Confidence 578999998765 889999999999999 999998 999999999999999999999999999999999999999999
Q ss_pred HHHH-HhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCC--CccHHHHHHHHhcc-ceeeecC
Q psy8483 88 EALK-KLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSH--QESMTQKIDEVKGT-IKFQMKK 161 (161)
Q Consensus 88 ~eL~-~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~--~~dl~~~i~~~~~~-v~~r~kk 161 (161)
+||+ ++.++ | .+||+|||+|++||+|++ ||++||||||||+|+++ +.|+.+.|++++++ ++||++|
T Consensus 98 edLi~kik~~------~-~~fD~~iAtp~~m~~l~~-LGkiLgprGlmP~pk~gTvt~dv~~~V~~~k~g~v~~r~~k 167 (234)
T 2wwq_5 98 EDLADQIKKG------E-MNFDVVIASPDAMRVVGQ-LGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDK 167 (234)
T ss_dssp HHHHHHHHHT------C-CCSSEEEECHHHHHHTTS-SCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHEEEECCSS
T ss_pred HHHHHHHHcC------c-ccCCEEEECHHHHHHHHH-HhhhhccCCCCCCccCCCccccHHHHHHHHHcCeeEEEecC
Confidence 9996 55332 4 899999999999999999 99999999999999998 68999999999987 8999875
No 9
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=2e-42 Score=282.32 Aligned_cols=143 Identities=24% Similarity=0.325 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhcccccccccceEEEEEEEEeecCCCC-CcceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCCCCCCCH
Q psy8483 9 TLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDV 87 (161)
Q Consensus 9 ~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk-~~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag~~vvg~ 87 (161)
.+.||+..+++. ..++|+||||++|+| ++|+++ |+++||+|.|||++|++.+|||||+++++++|+++||++||.
T Consensus 22 ~~~eAi~~lk~~---~~~kF~etvel~i~L-~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~~~~eAk~aGAd~vG~ 97 (229)
T 3u42_A 22 TIDEAAHLVKEL---ATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGG 97 (229)
T ss_dssp CHHHHHHHHHHH---CCSSSCCEEEEEEEE-SSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTTCSEEEC
T ss_pred CHHHHHHHHHHh---CCCCCCccEEEEEEE-ccCCCCCCCceeEEEECCCCCCCceEEEEecChHhHHHHHhcCCceeCc
Confidence 488999999887 789999999999999 999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCC--CccHHHHHHHHhc-cceeeecC
Q psy8483 88 EALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSH--QESMTQKIDEVKG-TIKFQMKK 161 (161)
Q Consensus 88 ~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~--~~dl~~~i~~~~~-~v~~r~kk 161 (161)
+||++..++ .+.+||+|||+|++||.|++.||++|||||+||+|+++ +.|+.++|+++++ +++||++|
T Consensus 98 ~dLi~kIk~------g~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~v~~r~dk 168 (229)
T 3u42_A 98 EEIIQKILD------GWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 168 (229)
T ss_dssp THHHHHHHT------TCCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTEEEEECCT
T ss_pred HHHHHHHhc------CCccccEEEEchHHHHHHHHhhccccccccccccCCCCCCCCCHHHHHHHHhCceEEEEeCC
Confidence 999865433 45899999999999999997799999999999999988 5899999999997 59999875
No 10
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.6e-41 Score=289.96 Aligned_cols=142 Identities=24% Similarity=0.375 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhcccccccccceEEEEEEEEeecCCCC-CcceeeeEEcCCCCCCCcEEEEecCcccHHHHHHCCCCCCCH
Q psy8483 9 TLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDV 87 (161)
Q Consensus 9 ~~~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk-~~~i~~~v~LP~~~~k~~kI~V~~~~~~~~~ak~ag~~vvg~ 87 (161)
.+.|||..+++. +.++|+||||++|+| ||||++ |+++||+|.|||+++++.+||||++++++++|+++||++||.
T Consensus 136 ~l~EAi~llK~~---~~~KFdETVEl~I~L-~vDpkk~dq~vRGtV~LPhgtgk~~kVcVfa~ge~~eeAk~AGAdvVG~ 211 (352)
T 3bbo_D 136 DLKTALSLMKQM---SSTKFVETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGG 211 (352)
T ss_dssp CTTTTHHHHSTT---CCSSSCCEECCEEEE-CSCTTSSTTCCEEEECCTTTSSSSSCEEEECCTTTTHHHHTTTCSEEEC
T ss_pred CHHHHHHHHHhc---cccCCCceEEEEEEe-CCCCcccccccceeecCCCCCCCccEEEEEeCchhHHHHHHcCCCccCH
Confidence 467999999886 889999999999999 999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccccCCCCCCccCC--CccHHHHHHHHhcc-ceeeecC
Q psy8483 88 EALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLSH--QESMTQKIDEVKGT-IKFQMKK 161 (161)
Q Consensus 88 ~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~--~~dl~~~i~~~~~~-v~~r~kk 161 (161)
+||++.+ ++++.+||+|||++++||+|++ ||++||||||||+|+++ +.|+.+.|++++++ ++||++|
T Consensus 212 edLikkI------Kkg~~dFD~fIAtpdmM~~lgr-LGkiLGPRGlMPnPk~GTVt~Dva~aV~e~K~G~v~fR~dK 281 (352)
T 3bbo_D 212 EELIEQI------KGGFMDFDKLIATSDMMAKVAS-LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDK 281 (352)
T ss_dssp TTTHHHH------TTTCCCCSEEEECSSSHHHHGG-GGGTTTTTTCSCCTTTTCBSSCHHHHHTTTTTCCEEEECCS
T ss_pred HHHHHHH------HhchhhcCEEEECHHHHHHHHh-hcccccccCCCCCCcCCcccccHHHHHHHHHcCeeEEEeCC
Confidence 9998664 4578999999999999999999 99999999999999998 58999999999987 8999875
No 11
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.97 E-value=3.5e-31 Score=210.33 Aligned_cols=119 Identities=16% Similarity=0.293 Sum_probs=105.3
Q ss_pred EEEEEEEEeecCCCCCcceeeeEEcCCCCCCCc-EEEEecCc-ccHHHHHHCCCCCCCHHHHH-HhhhcHHHHHhhhhhc
Q psy8483 31 TVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKM-QVCILGDQ-QHCDEAKAANVPFMDVEALK-KLNKNKKLVKKLAKKY 107 (161)
Q Consensus 31 sv~l~v~lk~id~kk~~~i~~~v~LP~~~~k~~-kI~V~~~~-~~~~~ak~ag~~vvg~~eL~-~~~~~~k~~kkl~~~~ 107 (161)
.|||+++|++ .+++.++||+|.||||++++. +|||||++ +++++|+++||+++|.|||. ++.++ ..+|
T Consensus 2 ~ieL~m~l~~--~r~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~~-------~~~f 72 (189)
T 2ftc_A 2 DLTLDMALGK--KKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDD-------EIVA 72 (189)
T ss_pred eEEEEEEecC--CccCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHcC-------CccC
Confidence 5899999987 366667799999999988766 99999998 58999999999999999995 55433 2789
Q ss_pred CEEEEehhhHhhhhhhhccccccCCCCCCccCC--CccHHHHHHHHhccceeeecC
Q psy8483 108 DAFLASDALIKQIPRLLGPGLNKAGKFPGLLSH--QESMTQKIDEVKGTIKFQMKK 161 (161)
Q Consensus 108 d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~~~--~~dl~~~i~~~~~~v~~r~kk 161 (161)
|+|||+|++||+|++ ||++|||| ||+|+++ +.|+.++|++++++.+||++|
T Consensus 73 D~~iAtp~~m~~l~~-l~~~Lg~K--mP~pk~gTvt~dv~~~v~~~k~g~~~r~~k 125 (189)
T 2ftc_A 73 DFYVAVPEIMPELNR-LRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGHEIKVDE 125 (189)
T ss_pred CEEEECHHHHHHHHH-hhccccCC--CCcccCCCccccHHHHHHHHhcceEEEecc
Confidence 999999999999999 79999976 9999998 689999999999999999875
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.30 E-value=1.5e-12 Score=98.53 Aligned_cols=52 Identities=33% Similarity=0.452 Sum_probs=45.5
Q ss_pred CcCChHHH---HHHHHHHHhcccccccccceEEEEEEEEeecCCCC-CcceeeeEEcCCC
Q psy8483 3 SKVSRDTL---YECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHI 58 (161)
Q Consensus 3 s~~~~~~~---~~av~~~~~~~~~~~~~F~esv~l~v~lk~id~kk-~~~i~~~v~LP~~ 58 (161)
++++.+.+ .|||..+++. +.++|+||||++|+| ||||++ |+++||+|.||||
T Consensus 12 ~kv~~~~~y~~~eAi~~~k~~---~~~kF~EtVel~i~L-~vDprk~dq~vrgtV~LP~g 67 (137)
T 2ov7_A 12 EKVDPNKIYTIDEAAHLVKEL---ATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHG 67 (137)
T ss_dssp TTSCTTCCBCHHHHHHHHHHT---CCSSSCCEEEEEEEE-SSCTTCSSCCCEEEEECTTS
T ss_pred HhcCcccccCHHHHHHHHHhc---ccCCCCccEEEEEEe-CCCCccccceeeEEEEcCCC
Confidence 44555544 6999998765 899999999999999 999998 9999999999997
No 13
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=57.59 E-value=9.2 Score=27.10 Aligned_cols=68 Identities=12% Similarity=0.274 Sum_probs=50.1
Q ss_pred cEEEEecCcccHHHHHHCCCC---CCCHHHHHHhhhcHHHHHhhh-hhcCEEEEehhhHhhhhhhhccccccCCCCCCcc
Q psy8483 63 MQVCILGDQQHCDEAKAANVP---FMDVEALKKLNKNKKLVKKLA-KKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLL 138 (161)
Q Consensus 63 ~kI~V~~~~~~~~~ak~ag~~---vvg~~eL~~~~~~~k~~kkl~-~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~p~ 138 (161)
.||+|++|.+...--+-+|++ +-+.+|+.+..+ ++. .+|..++-++++...++..+-+ + .+...|..+
T Consensus 3 mKiaVIGD~Dtv~GFrLaGie~~~v~~~ee~~~~~~------~l~~~digIIlIte~ia~~i~~~i~~-~-~~~~~P~Iv 74 (115)
T 3aon_B 3 YKIGVVGDKDSVSPFRLFGFDVQHGTTKTEIRKTID------EMAKNEYGVIYITEQCANLVPETIER-Y-KGQLTPAII 74 (115)
T ss_dssp EEEEEESCHHHHGGGGGGTCEEECCCSHHHHHHHHH------HHHHTTEEEEEEEHHHHTTCHHHHHH-H-HTSSSCEEE
T ss_pred eEEEEEECHHHHHHHHHcCCeEEEeCCHHHHHHHHH------HHHhcCceEEEEeHHHHHHhHHHHHH-H-hCCCCCEEE
Confidence 489999998777777778888 346677765542 222 3788999999999999987776 3 366677664
No 14
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=55.35 E-value=13 Score=25.85 Aligned_cols=70 Identities=13% Similarity=0.251 Sum_probs=49.1
Q ss_pred CcEEEEecCcccHHHHHHCCCC--C--CCHHHHHHhhhcHHHHHhhh--hhcCEEEEehhhHhhhhhhhccccccCCCCC
Q psy8483 62 KMQVCILGDQQHCDEAKAANVP--F--MDVEALKKLNKNKKLVKKLA--KKYDAFLASDALIKQIPRLLGPGLNKAGKFP 135 (161)
Q Consensus 62 ~~kI~V~~~~~~~~~ak~ag~~--v--vg~~eL~~~~~~~k~~kkl~--~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP 135 (161)
..-++|++|.+...--+-+|+. + -+.+|+.+..+ ++. .+|..++-++++...++..+-+.- ....+|
T Consensus 9 ~~~~aVIGD~Dtv~GFrLaGi~~~~~~~~~ee~~~~~~------~l~~~~digIIlIte~ia~~i~~~i~~~~-~~~~~P 81 (102)
T 2i4r_A 9 SHMLAVVGDPDFTIGFMLAGISDIYEVTSDEEIVKAVE------DVLKRDDVGVVIMKQEYLKKLPPVLRREI-DEKVEP 81 (102)
T ss_dssp CCEEEEEECHHHHHHHHHTTCCCEEECCSHHHHHHHHH------HHHHCSSEEEEEEEGGGSTTSCHHHHTTT-TTCCSS
T ss_pred ceeEEEEcCHHHHHHHHHcCCCcccCCCCHHHHHHHHH------HHhhCCCeEEEEEeHHHHHHHHHHHHHHH-hCCCcc
Confidence 3458999999888888999998 2 35566765442 232 358899999999999987654443 234667
Q ss_pred Ccc
Q psy8483 136 GLL 138 (161)
Q Consensus 136 ~p~ 138 (161)
..+
T Consensus 82 ~Ii 84 (102)
T 2i4r_A 82 TFV 84 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 15
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=53.37 E-value=14 Score=25.75 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=49.0
Q ss_pred CcEEEEecCcccHHHHHHCCCC---CCCHHHHHHhhhcHHHHHhhh--hhcCEEEEehhhHhhhhhhhccccccCCCCCC
Q psy8483 62 KMQVCILGDQQHCDEAKAANVP---FMDVEALKKLNKNKKLVKKLA--KKYDAFLASDALIKQIPRLLGPGLNKAGKFPG 136 (161)
Q Consensus 62 ~~kI~V~~~~~~~~~ak~ag~~---vvg~~eL~~~~~~~k~~kkl~--~~~d~fiA~~~~m~~l~k~LG~~LgprgkmP~ 136 (161)
+.||+|++|.+...--+-+|++ +-+.+|+.+..+ ++. .+|..++-++++...++..+-+.- .....|.
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~~~v~~~ee~~~~~~------~l~~~~digIIlIte~~a~~i~~~i~~~~-~~~~~P~ 75 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEGYGASSAEEAQSLLE------TLVERGGYALVAVDEALLPDPERAVERLM-RGRDLPV 75 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEEEECSSHHHHHHHHH------HHHHHCCCSEEEEETTTCSCHHHHHHHHT-TCCCCCE
T ss_pred ccEEEEEeCHHHHHHHHHcCCeEEEeCCHHHHHHHHH------HHhhCCCeEEEEEeHHHHHhhHHHHHHHH-hCCCCeE
Confidence 4589999998888888889998 346677765442 233 369999999999988886544332 2334665
Q ss_pred cc
Q psy8483 137 LL 138 (161)
Q Consensus 137 p~ 138 (161)
.+
T Consensus 76 Il 77 (109)
T 2d00_A 76 LL 77 (109)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 16
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=49.42 E-value=17 Score=24.88 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=42.0
Q ss_pred EEEEecCcccHHHHHHCCCC----CCCHHHHHHhhhcHHHHHhhh--hhcCEEEEehhhHhhhhhhh
Q psy8483 64 QVCILGDQQHCDEAKAANVP----FMDVEALKKLNKNKKLVKKLA--KKYDAFLASDALIKQIPRLL 124 (161)
Q Consensus 64 kI~V~~~~~~~~~ak~ag~~----vvg~~eL~~~~~~~k~~kkl~--~~~d~fiA~~~~m~~l~k~L 124 (161)
||+|++|.+...--+-+|+. +-+.+|+.+..+ ++. .+|..++-++++...++..+
T Consensus 2 kiaVIGD~dtv~GFrLaGi~~v~~v~~~ee~~~~~~------~l~~~~digIIlite~~a~~i~~~i 62 (101)
T 2ov6_A 2 ELAVIGKSEFVTGFRLAGISKVYETPDIPATESAVR------SVLEDKSVGILVMHNDDIGNLPEVL 62 (101)
T ss_dssp CEEEEECHHHHHHHHHHTCCEEEECCSTTTHHHHHH------HHHHHTSSSEEEEEHHHHTTCTTTT
T ss_pred EEEEEECHHHHHHHHHcCCCceEecCCHHHHHHHHH------HHhhCCCeEEEEEcHHHHHHhHHHH
Confidence 79999998888878888999 336666765442 233 36999999999999998755
No 17
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=47.51 E-value=18 Score=25.51 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=52.0
Q ss_pred cEEEEecCcccHHHHHHCCCC---C-CCH----HHHHHhhhcHHHHHhhh--hhcCEEEEehhhHhhhh--hhhcccccc
Q psy8483 63 MQVCILGDQQHCDEAKAANVP---F-MDV----EALKKLNKNKKLVKKLA--KKYDAFLASDALIKQIP--RLLGPGLNK 130 (161)
Q Consensus 63 ~kI~V~~~~~~~~~ak~ag~~---v-vg~----~eL~~~~~~~k~~kkl~--~~~d~fiA~~~~m~~l~--k~LG~~Lgp 130 (161)
.||+|++|.+...--+-+|+. + .+. +|+.+..+ ++. .+|..++-++++...++ ..+-
T Consensus 1 MKIaVIGD~Dtv~GFrLaGi~~~~v~~~~~t~~ee~~~~~~------~l~~~~digIIlIte~ia~~i~~~~~i~----- 69 (111)
T 2qai_A 1 MKIVVMGDSDTVVGFRLAGVHEAYEYDESLESVERARNKLR------ELLERDDVGIILITERLAQRIGSLPEVK----- 69 (111)
T ss_dssp CEEEEEECHHHHHHHHHHTCSEEEECCSSHHHHHHHHHHHH------HHHTCTTEEEEEEEHHHHHHHCSCCCCS-----
T ss_pred CEEEEEECHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHH------HHhhCCCeEEEEEcHHHHhhcccccccC-----
Confidence 379999998888778888998 3 466 67665442 233 46999999999999998 4333
Q ss_pred CCCCCCcc--CC---C----ccHHHHHHHHhc
Q psy8483 131 AGKFPGLL--SH---Q----ESMTQKIDEVKG 153 (161)
Q Consensus 131 rgkmP~p~--~~---~----~dl~~~i~~~~~ 153 (161)
.|..+ |. + +.+.+.|+++-+
T Consensus 70 ---~P~IleIPs~~g~~~~~d~i~~~V~~aiG 98 (111)
T 2qai_A 70 ---FPIILQIPDKFGSIYGEDILRDVVRRAIG 98 (111)
T ss_dssp ---SSEEEEECTTC------CTHHHHHHHHC-
T ss_pred ---CCEEEEECCCCCCCchHHHHHHHHHHHhC
Confidence 66544 21 1 356666666543
No 18
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=41.56 E-value=7.8 Score=30.31 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=20.3
Q ss_pred hhhccccccCCCCCCccCCC-ccHHHHHHH
Q psy8483 122 RLLGPGLNKAGKFPGLLSHQ-ESMTQKIDE 150 (161)
Q Consensus 122 k~LG~~LgprgkmP~p~~~~-~dl~~~i~~ 150 (161)
..||++||| ++||..+.|+ -.+..-+..
T Consensus 117 ~~l~riLG~-~l~p~gk~P~p~~~t~dv~~ 145 (216)
T 3iz5_A 117 KQIPRLLGP-GLNKAGKFPTLVSHQESLEA 145 (216)
T ss_dssp HHHHHHHTT-TCSCCTTTTCBCSCHHHHHH
T ss_pred HHHHHHhcc-cccccCCcCCCcCCcccHHH
Confidence 348999999 9999999886 344444443
No 19
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=40.14 E-value=9.3 Score=26.70 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=40.8
Q ss_pred CCCcEEEEecCc---------ccHHHHHHCCCC--C--CCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhcc
Q psy8483 60 RPKMQVCILGDQ---------QHCDEAKAANVP--F--MDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGP 126 (161)
Q Consensus 60 ~k~~kI~V~~~~---------~~~~~ak~ag~~--v--vg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~ 126 (161)
.++.+|.++|.+ ...+.|++.|++ + .+..++.+ ...+||++|..|.+--.+.. +-.
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~----------~~~~~DvvLLgPQV~y~~~~-ik~ 72 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYD----------IMGVYDLIILAPQVRSYYRE-MKV 72 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTT----------TGGGCSEEEECGGGGGGHHH-HHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHh----------hccCCCEEEEChHHHHHHHH-HHH
Confidence 357789999974 234567778887 3 22333211 23679999999988766666 444
Q ss_pred ccccCCCCCCcc
Q psy8483 127 GLNKAGKFPGLL 138 (161)
Q Consensus 127 ~LgprgkmP~p~ 138 (161)
...+.| .|..+
T Consensus 73 ~~~~~~-ipV~v 83 (108)
T 3nbm_A 73 DAERLG-IQIVA 83 (108)
T ss_dssp HHTTTT-CEEEE
T ss_pred HhhhcC-CcEEE
Confidence 444444 34443
No 20
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=39.31 E-value=23 Score=24.32 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=37.9
Q ss_pred cEEEEecCc---------ccHHHHHHCCCCC----CCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhhhhccccc
Q psy8483 63 MQVCILGDQ---------QHCDEAKAANVPF----MDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLN 129 (161)
Q Consensus 63 ~kI~V~~~~---------~~~~~ak~ag~~v----vg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k~LG~~Lg 129 (161)
.||+++|.. ...+.+++.|+++ ++..++.+ ...+||+++.+|.+--.+.. +-..+.
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~----------~~~~~Dvil~~pqv~~~~~~-~~~~~~ 72 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGE----------KGQNADVVLLGPQIAYMLPE-IQRLLP 72 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTH----------HHHHCSEEEECTTSGGGHHH-HHHHSS
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHh----------hccCCCEEEEccchhhhHHH-HHHHhc
Confidence 478888863 2345678889872 33333322 13679999999887766665 334333
Q ss_pred cCCCCCCcc
Q psy8483 130 KAGKFPGLL 138 (161)
Q Consensus 130 prgkmP~p~ 138 (161)
+ .|.|+
T Consensus 73 ~---~~v~v 78 (106)
T 1e2b_A 73 N---KPVEV 78 (106)
T ss_dssp S---SCCCB
T ss_pred C---CCceE
Confidence 2 36655
No 21
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=31.80 E-value=27 Score=23.84 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=31.5
Q ss_pred CcEEEEecCc---------ccHHHHHHCCCC----CCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHhhhhh
Q psy8483 62 KMQVCILGDQ---------QHCDEAKAANVP----FMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPR 122 (161)
Q Consensus 62 ~~kI~V~~~~---------~~~~~ak~ag~~----vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~~l~k 122 (161)
..+|+++|.. ...+.+++.|++ ..+..++.+. ..+||++|.++++--.+.+
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~----------~~~~D~Ii~t~~l~~~~~~ 67 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEV----------VDRFDVVLLAPQSRFNKKR 67 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHH----------TTTCSEEEECSCCSSHHHH
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhh----------cCCCCEEEECCccHHHHHH
Confidence 3678888863 223456777765 3344444432 2579999999887654444
No 22
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=24.48 E-value=34 Score=24.03 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.0
Q ss_pred cHHHHHHCCCCCCCHHHHHHhhhc
Q psy8483 73 HCDEAKAANVPFMDVEALKKLNKN 96 (161)
Q Consensus 73 ~~~~ak~ag~~vvg~~eL~~~~~~ 96 (161)
..++|++.|++||+.+.|..+...
T Consensus 63 Kl~kA~~lgI~IvsE~~l~~~~~~ 86 (113)
T 2cok_A 63 KMEEVKEANIRVVSEDFLQDVSAS 86 (113)
T ss_dssp HHHHHHHTTCCEECTHHHHHHHSC
T ss_pred HHHHHHHCCCcEEeHHHHHHHHhh
Confidence 557899999999999988766543
No 23
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=23.84 E-value=86 Score=21.22 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=29.9
Q ss_pred CcEEEEecCcc----------cHHHHHHCCCC-----CCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhHh
Q psy8483 62 KMQVCILGDQQ----------HCDEAKAANVP-----FMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIK 118 (161)
Q Consensus 62 ~~kI~V~~~~~----------~~~~ak~ag~~-----vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m~ 118 (161)
..+|+++|..- ..+.+++.|++ ..+..++... ..+||++|.++++-.
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~----------~~~~DlIi~t~~l~~ 79 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGL----------ASNYDIVVASNHLIH 79 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHH----------GGGCSEEEEETTTGG
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhc----------cCCCcEEEECCchHH
Confidence 45799999742 23456777865 2355555322 257999999887653
No 24
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Probab=23.10 E-value=33 Score=25.26 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=18.7
Q ss_pred hccccccCCCCCCccCCCccHHHHHHHHhccc
Q psy8483 124 LGPGLNKAGKFPGLLSHQESMTQKIDEVKGTI 155 (161)
Q Consensus 124 LG~~LgprgkmP~p~~~~~dl~~~i~~~~~~v 155 (161)
||+.|||+|.=|. ...+++-+.-.+++.++
T Consensus 23 lgPaLG~~Gvni~--~f~k~fN~~T~~~k~G~ 52 (141)
T 3r8s_I 23 VGPALGQQGVNIM--EFCKAFNAKTDSIEKGL 52 (141)
T ss_dssp TCTTSSSSSCCSS--STTTTGGGTHHHHCSCS
T ss_pred cchhhccCCCCHH--HHHHHHHHHHhcccCCC
Confidence 8999999998543 33444445555555443
No 25
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=22.80 E-value=45 Score=22.35 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=20.1
Q ss_pred cccHHHHHHCCCCCCCHHHHHHhhh
Q psy8483 71 QQHCDEAKAANVPFMDVEALKKLNK 95 (161)
Q Consensus 71 ~~~~~~ak~ag~~vvg~~eL~~~~~ 95 (161)
+...++|++.|+++++.+++.+...
T Consensus 55 gsK~~kA~~lgI~Ii~E~~f~~~l~ 79 (92)
T 1l7b_A 55 GSKLEKARALGVPTLTEEELYRLLE 79 (92)
T ss_dssp STTHHHHHCSSSCCEEHHHHHHHHH
T ss_pred ChHHHHHHHcCCcEEeHHHHHHHHH
Confidence 4567789999999999998876643
No 26
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=22.77 E-value=34 Score=23.80 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=13.8
Q ss_pred cHHHHHHCCCCCCCHHHHHHhh
Q psy8483 73 HCDEAKAANVPFMDVEALKKLN 94 (161)
Q Consensus 73 ~~~~ak~ag~~vvg~~eL~~~~ 94 (161)
..++|++.|+++++.++|.++.
T Consensus 84 K~~kA~~lgI~Ii~E~~f~~ll 105 (109)
T 2k6g_A 84 KSDKAAALGTKIIDEDGLLNLI 105 (109)
T ss_dssp HHHHHHHHTCEEECHHHHHHHH
T ss_pred HHHHHHHcCCeEEeHHHHHHHH
Confidence 3455666777777777766543
No 27
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=22.09 E-value=41 Score=23.13 Aligned_cols=46 Identities=9% Similarity=0.115 Sum_probs=27.4
Q ss_pred CcEEEEecCcc----------cHHHHHHCCCC----CCCHHHHHHhhhcHHHHHhhhhhcCEEEEehhhH
Q psy8483 62 KMQVCILGDQQ----------HCDEAKAANVP----FMDVEALKKLNKNKKLVKKLAKKYDAFLASDALI 117 (161)
Q Consensus 62 ~~kI~V~~~~~----------~~~~ak~ag~~----vvg~~eL~~~~~~~k~~kkl~~~~d~fiA~~~~m 117 (161)
..+|+++|..- ..+.+++.|++ ..+..++.. ...+||++|.++++-
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~----------~~~~~DlIist~~l~ 80 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET----------YMDGVHLICTTARVD 80 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT----------STTSCSEEEESSCCC
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh----------ccCCCCEEEECCccc
Confidence 45799999631 23456777876 223333321 125799999977653
No 28
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=21.05 E-value=45 Score=24.12 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=36.1
Q ss_pred CcEEEEecCcccHHHHHHCCCCCCCHHHHHHhhhcHHHHHhhhhhcC----EEEEehhhHhhhhhhhccccccCCCCCCc
Q psy8483 62 KMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYD----AFLASDALIKQIPRLLGPGLNKAGKFPGL 137 (161)
Q Consensus 62 ~~kI~V~~~~~~~~~ak~ag~~vvg~~eL~~~~~~~k~~kkl~~~~d----~fiA~~~~m~~l~k~LG~~LgprgkmP~p 137 (161)
+.=|+||-++=.. +.+.-...++.++|..++. .| .+|| -||...++-..+.. |.+-||-.+ |+-
T Consensus 16 NLfIAVIlenF~~--~~~~~~~~l~~~dl~~F~~------~W-~~fDP~aTg~I~~~~L~~ll~~-L~pPLgi~k--pnr 83 (129)
T 2kav_A 16 PRGSHMASENFSV--ATEESAEPLSEDDFEMFYE------VW-EKFDPDATQFIEFAKLSDFADA-LDPPLLIAK--PNK 83 (129)
T ss_dssp --------CCSCC--TTSSCSCSSCHHHHHHHHH------HH-HHHCTTCCCEECGGGHHHHHHH-SCTTSCCCT--TCC
T ss_pred heeeeeeeccHHH--HHHhhccCCCHHHHHHHHH------HH-HhcCCCCceEEeHHHHHHHHHh-CCccccCCC--ccH
Confidence 4568898874211 1111233699999998853 24 5676 48887777777766 899999877 653
No 29
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=20.51 E-value=15 Score=28.39 Aligned_cols=26 Identities=4% Similarity=0.106 Sum_probs=22.1
Q ss_pred cEEEEecCcccHHHHHHCCCCCCCHH
Q psy8483 63 MQVCILGDQQHCDEAKAANVPFMDVE 88 (161)
Q Consensus 63 ~kI~V~~~~~~~~~ak~ag~~vvg~~ 88 (161)
.|||=+.+.+.++.|.++|++++|.-
T Consensus 4 vKICGit~~eda~~a~~~GaD~iGfi 29 (205)
T 1nsj_A 4 VKICGITNLEDALFSVESGADAVGFV 29 (205)
T ss_dssp EEECCCCSHHHHHHHHHHTCSEEEEE
T ss_pred EEECCCCcHHHHHHHHHcCCCEEEEE
Confidence 68999998888899999999977764
No 30
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=20.43 E-value=15 Score=28.31 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=22.3
Q ss_pred cEEEEecCcccHHHHHHCCCCCCCHH
Q psy8483 63 MQVCILGDQQHCDEAKAANVPFMDVE 88 (161)
Q Consensus 63 ~kI~V~~~~~~~~~ak~ag~~vvg~~ 88 (161)
.|||=+.+.+.++.|.++|++++|.-
T Consensus 3 vKICGit~~eda~~a~~~GaD~iGfi 28 (203)
T 1v5x_A 3 VKICGITRLEDALLAEALGAFALGFV 28 (203)
T ss_dssp EEECCCCCHHHHHHHHHHTCSEEEEE
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEEE
Confidence 58999999888999999999977764
Done!