RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8483
(161 letters)
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional.
Length = 216
Score = 229 bits (586), Expect = 1e-77
Identities = 98/159 (61%), Positives = 130/159 (81%)
Query: 3 SKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPK 62
SK+S + L + + +L ++ K++F++TVELQIGLK+YD QKDKRFSG+VKL ++P+P
Sbjct: 2 SKLSSEALRKAIAEILEGSEEKKRKFVETVELQIGLKDYDTQKDKRFSGSVKLPNVPKPN 61
Query: 63 MQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPR 122
++VC+LGD HCDEAK + FMD+E LKK NKNKKLVKKLAKKYDAFLAS +L+ QIPR
Sbjct: 62 LKVCVLGDAVHCDEAKKLGLDFMDIEGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQIPR 121
Query: 123 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
LLGPGLNKAGKFP L++H + + KI+E+K ++KFQ+KK
Sbjct: 122 LLGPGLNKAGKFPTLITHNDDIEDKINELKSSVKFQLKK 160
>gnl|CDD|140252 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Provisional.
Length = 214
Score = 166 bits (421), Expect = 1e-52
Identities = 83/159 (52%), Positives = 117/159 (73%), Gaps = 2/159 (1%)
Query: 3 SKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPK 62
SK+ TL E + VL K +++F ++++LQ+ LKNYDPQKDKRFSG++KL ++ RP+
Sbjct: 2 SKIPPQTLSEAIQAVLKVDK--ERKFKESIDLQVNLKNYDPQKDKRFSGSLKLPNVCRPR 59
Query: 63 MQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPR 122
M VC+L D H D AK VP M+ E LKKLNKNKKLVKK+ +YDAFL S+++IK +PR
Sbjct: 60 MTVCLLCDLVHEDIAKKEGVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPR 119
Query: 123 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
L+GP +++ GKFP + S ES+ K+ E++ T+KFQ+KK
Sbjct: 120 LVGPHMHRMGKFPTVCSPSESLPDKVVELRSTVKFQLKK 158
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1. The L1 protein,
located near the E-site of the ribosome, forms part of
the L1 stalk along with 23S rRNA. In bacteria and
archaea, L1 functions both as a ribosomal protein that
binds rRNA, and as a translation repressor that binds
its own mRNA. Like several other large ribosomal
subunit proteins, L1 displays RNA chaperone activity.
L1 is one of the largest ribosomal proteins. It is
composed of two domains that cycle between open and
closed conformations via a hinge motion. The RNA-binding
site of L1 is highly conserved, with both mRNA and rRNA
binding the same binding site.
Length = 208
Score = 139 bits (352), Expect = 3e-42
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 18 LNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEA 77
L V K++F +TVELQI LK D +KD+R GTV L H ++VC+ + EA
Sbjct: 8 LKKTSVKKRKFDETVELQINLKKDDRKKDQRIRGTVILPHGLGKDVKVCVFAKDEQAKEA 67
Query: 78 KAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGL 137
KAA + E LKK KN + KKLAK +D FLA ++ +P+LLG L GK P
Sbjct: 68 KAAGADVVGGEDLKKKIKNGEA-KKLAKDFDLFLADPRIMMLLPKLLGKVLGPRGKMPNP 126
Query: 138 LSHQ--ESMTQKIDEVKGTIKFQMKK 161
+ E + + I+E K +++F++ K
Sbjct: 127 KTGTVTEDLAKAIEEAKSSVEFRLDK 152
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family. This
family includes prokaryotic L1 and eukaryotic L10.
Length = 200
Score = 124 bits (313), Expect = 2e-36
Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 22 KVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHC--DEAKA 79
K K++F +TVELQI LK +KD+ GTV L H ++VC++ EAK
Sbjct: 6 KTAKRKFDETVELQINLKKDPRKKDQNVRGTVVLPHGLGKDVKVCVIAKDPEAKAKEAKD 65
Query: 80 ANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFPGLLS 139
A + E LK+ K KK +KLAK +D FLA ++ +P+LLG L GK P +
Sbjct: 66 AGADVVGGEDLKEKYKIKKG-RKLAKDFDVFLADPDIMPLLPKLLGKVLGPRGKMPNPKT 124
Query: 140 H-QESMTQKIDEVKGTIKFQMK 160
+ + I+E K K
Sbjct: 125 TVTPDVAKAIEEAKSGTVEFRK 146
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal
structure and biogenesis].
Length = 228
Score = 93.4 bits (233), Expect = 3e-24
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 1 MQSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIP 59
KV R+ LY V + +K++F +TVE+ + LK DP+K D+R G+V L +
Sbjct: 11 ASEKVDRNKLYSLEEAVKLLKETSKRKFDETVEVAVNLK-VDPRKPDQRVRGSVVLPNGT 69
Query: 60 RPKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQ 119
++V + D + +EAKAA ++ E L +L KN + AK +D F+A+ ++
Sbjct: 70 GKTVRVAVFADGEKAEEAKAAGADYVGGEDLIELIKNGR-----AKDFDVFIATPDMMPL 124
Query: 120 IPRLLGPGLNKAGKFPGLLSHQESM--TQKIDEVK-GTIKFQMKK 161
+ LG L G P + + + ++E+K GT++F+ K
Sbjct: 125 V-GKLGKVLGPRGLMPNPKTGTVTDDVAKAVEELKKGTVEFRADK 168
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed.
Length = 215
Score = 80.3 bits (199), Expect = 2e-19
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Query: 5 VSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKM 63
+ R+ + E V L A K+ F Q+V+L + LK+ D +K + R V L H ++
Sbjct: 2 MDREKIEEAVKEALEEAP--KRNFTQSVDLIVNLKDIDLKKPENRIDEEVVLPHGRGKEV 59
Query: 64 QVCILGDQQHCDEAKAANVPF-MDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPR 122
++ ++ + +AK A + + E L++L +K+ KKLA +YD F+A L+ I R
Sbjct: 60 KIAVIAKGELALQAKEAGADYVITREELEELGGDKRAAKKLANEYDFFIAEADLMPLIGR 119
Query: 123 LLGPGLNKAGKFP 135
LGP L GK P
Sbjct: 120 YLGPVLGPRGKMP 132
>gnl|CDD|163633 cd07390, MPP_AQ1575, Aquifex aeolicus AQ1575 and related proteins,
metallophosphatase domain. This family includes
bacterial and archeal proteins homologous to AQ1575, an
uncharacterized Aquifex aeolicus protein. AQ1575 may
play an accessory role in DNA repair, based on the close
proximity of its gene to Holliday junction resolvasome
genes. The domain present in members of this family
belongs to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 168
Score = 33.0 bits (76), Expect = 0.031
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 60 RPKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVK-----KLAKKYDAFLASD 114
P V LGD KA ++E L +LN K L+K L +K AFL
Sbjct: 41 GPDDTVYHLGD--FSFGGKAGT----ELELLSRLNGRKHLIKGNHDSSLERKLLAFLLKF 94
Query: 115 ALIKQIPRLLGPGLNKAGKFPGLLSH 140
+ Q RL K G LSH
Sbjct: 95 ESVLQAVRL------KIGGRRVYLSH 114
>gnl|CDD|211630 TIGR01169, rplA_bact, ribosomal protein L1, bacterial/chloroplast.
This model describes bacterial (and chloroplast)
ribosomal protein L1. The apparent mitochondrial L1 is
sufficiently diverged to be the subject of a separate
model [Protein synthesis, Ribosomal proteins: synthesis
and modification].
Length = 227
Score = 32.6 bits (75), Expect = 0.050
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 2 QSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPR 60
+ KV R+ LY + + +F +TVE+ I L DP+K D++ G+V L H
Sbjct: 10 REKVDRNKLYSLDEAIDLLKETATAKFDETVEVAIRL-GIDPRKSDQQVRGSVVLPHGTG 68
Query: 61 PKMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQI 120
++V + + EAKAA ++ + L + K +KK +D +A+ +++ +
Sbjct: 69 KTVRVAVFAKGEKAKEAKAAGADYVGSDDL--IEK----IKKGWLDFDVVIATPDMMRVV 122
Query: 121 PRL---LGP 126
+L LGP
Sbjct: 123 GKLGRILGP 131
>gnl|CDD|188659 cd07440, RGS, Regulator of G protein signaling (RGS) domain
superfamily. The RGS domain is an essential part of the
Regulator of G-protein Signaling (RGS) protein family, a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory roles as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. While
inactive, G-alpha-subunits bind GDP, which is released
and replaced by GTP upon agonist activation. GTP binding
leads to dissociation of the alpha-subunit and the
beta-gamma-dimer, allowing them to interact with
effectors molecules and propagate signaling cascades
associated with cellular growth, survival, migration,
and invasion. Deactivation of the G-protein signaling
controlled by the RGS domain accelerates GTPase activity
of the alpha subunit by hydrolysis of GTP to GDP, which
results in the reassociation of the alpha-subunit with
the beta-gamma-dimer and thereby inhibition of
downstream activity. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins are
also involved in apoptosis and cell proliferation, as
well as modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, while others
play important roles in neuronal signals modulation.
Some RGS proteins are principal elements needed for
proper vision.
Length = 113
Score = 31.2 bits (71), Expect = 0.082
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 70 DQQHCDEAKAANVPF-MDVEALKKLNKNKKLVKKLAKK-YDAFLASDALIKQIP 121
+HC+E N+ F + VE KK + + +K AK+ YD +++ DA K+I
Sbjct: 15 KSEHCEE----NLEFWLAVEKFKKTTSSDEELKSKAKEIYDKYISKDA-PKEIN 63
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 31.6 bits (72), Expect = 0.13
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 100 VKKLAKKYDAFLASDALIKQIPR-----LLGPGLNKAGK 133
V+ L KKY F A + ++ R LLGP N AGK
Sbjct: 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGP--NGAGK 39
>gnl|CDD|216023 pfam00615, RGS, Regulator of G protein signaling domain. RGS
family members are GTPase-activating proteins for
heterotrimeric G-protein alpha-subunits.
Length = 117
Score = 28.0 bits (63), Expect = 1.4
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 70 DQQHCDEAKAANVPF-MDVEALKKLNKNKKLVKKLAKKYDAFLASDA 115
+ + +E N+ F + E KK +++ +KK + Y+ FLA D+
Sbjct: 20 ESEFSEE----NLEFWLACEEFKKAKSDEERLKKAREIYNKFLAPDS 62
>gnl|CDD|116890 pfam08307, Glyco_hydro_98C, Glycosyl hydrolase family 98 C-terminal
domain. This putative domain is found at the C-terminus
of glycosyl hydrolase family 98 proteins. This domain is
not expected to form part of the catalytic activity.
Length = 231
Score = 28.0 bits (62), Expect = 1.9
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 34 LQIGLKNYDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCD 75
L I L NY +K + T+ L + GD+
Sbjct: 160 LSIYLNNYRTEKGPLRTDTITLSGASSTPTYSNVFGDRGEYQ 201
>gnl|CDD|220469 pfam09917, DUF2147, Uncharacterized protein conserved in bacteria
(DUF2147). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 110
Score = 26.5 bits (59), Expect = 3.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 41 YDPQKDKRFSGTVKLKHIPRPKMQVCILG 69
YDP+ K +SG + LK K++ C+ G
Sbjct: 71 YDPENGKTYSGKITLKGNDTLKVRGCVGG 99
>gnl|CDD|235419 PRK05339, PRK05339, PEP synthetase regulatory protein; Provisional.
Length = 269
Score = 27.0 bits (61), Expect = 4.3
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Query: 78 KAANVPFM-DV---EALKKLNKNKKLV 100
KAAN P + +V E L + KK+
Sbjct: 169 KAANYPLVPEVPLPEELFPI-DPKKIF 194
>gnl|CDD|217347 pfam03063, Prismane, Prismane/CO dehydrogenase family. This family
includes both hybrid-cluster proteins and the beta chain
of carbon monoxide dehydrogenase. The hybrid-cluster
proteins contain two Fe/S centres - a [4Fe-4S] cubane
cluster, and a hybrid [4Fe-2S-2O] cluster. The
physiological role of this protein is as yet unknown,
although a role in nitrate/nitrite respiration has been
suggested. The prismane protein from Escherichia coli
was shown to contain hydroxylamine reductase activity
(NH2OH + 2e + 2 H+ -> NH3 + H2O). This activity is
rather low. Hydroxylamine reductase activity was also
found in CO-dehydrogenase in which the active site Ni
was replaced by Fe. The CO dehydrogenase contains a
Ni-3Fe-2S-3O centre.
Length = 505
Score = 26.7 bits (60), Expect = 6.0
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 75 DEAKAANVPFMDVEALKKLNKN-KKLV----KKLAKKYDAFL 111
E K NV D LK++ ++ + L K L K+
Sbjct: 59 AEGKLTNVNIDDERKLKRIAESLRALAPYGRKGLWAKHAIVP 100
>gnl|CDD|227074 COG4731, COG4731, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 162
Score = 26.3 bits (58), Expect = 6.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 41 YDPQKDKRFSGTVKLKHIPRPKMQVCILG 69
YDP K +SG V + K++ C+L
Sbjct: 121 YDPANGKTYSGKVTVDEGGNLKLKGCVLI 149
>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain.
Length = 202
Score = 26.4 bits (59), Expect = 6.3
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 83 PFMDVEALKKLNKNKKLVKKLA----KKYDAFLASDALIKQI 120
P+ E KL +LVK+ A K Y F+ DA + +I
Sbjct: 156 PYQAREIAFKLGLEGELVKQAADIIKKLYKLFVERDATLVEI 197
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 26.5 bits (59), Expect = 6.7
Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 16/116 (13%)
Query: 49 FSGTVKL-KHIPRPK-MQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKK 106
GT +L + I +++ + G + EA + V + + + +L ++LA K
Sbjct: 136 AGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELAQRLADK 195
Query: 107 YDAFLASDALIKQIPRL-----LGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 157
L A +K R L +A + + D +G F
Sbjct: 196 PPLAL---AALKAAMRAALEDALPEVRAQALR------LYPAPFSTDDVKEGIQAF 242
>gnl|CDD|225576 COG3033, TnaA, Tryptophanase [Amino acid transport and metabolism].
Length = 471
Score = 26.7 bits (59), Expect = 7.0
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 41 YDPQKDKRFSGTVKLKHIPRPKMQVCILGDQQHCDEAKAANVPFMDVEALKKLN------ 94
+D + F G L+ + ++ DE A NVP++ +
Sbjct: 157 FDTEVKYPFKGNFDLEKL------------ERLIDEVGADNVPYIVLTITNNSAGGQPVS 204
Query: 95 -KNKKLVKKLAKKYDAFLASDA 115
N K V ++AKKYD + DA
Sbjct: 205 MANMKAVYEIAKKYDIPVVMDA 226
>gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional.
Length = 316
Score = 26.5 bits (59), Expect = 8.0
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 87 VEALKKLNKNKKLVKKLAKKYDAFLAS 113
VEALK K+ K V+ LA Y AS
Sbjct: 236 VEALK--AKDFKAVRALAPNYANDYAS 260
>gnl|CDD|232868 TIGR00196, yjeF_cterm, yjeF C-terminal region, hydroxyethylthiazole
kinase-related. E. coli yjeF has full-length orthologs
in a number of species, all of unknown function.
However, yeast YNL200C is homologous and corresponds to
the N-terminal region while yeast YKL151C and B.
subtilis yxkO correspond to this C-terminal region only
[Unknown function, General].
Length = 271
Score = 26.2 bits (58), Expect = 8.1
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 76 EAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAGKFP 135
+ +L ++L ++YD ++GPGL + F
Sbjct: 62 NVITLINSVSPELIVHRLGWKVDEDEELLERYDVV------------VIGPGLGQDPSFK 109
Query: 136 GLLSHQESMTQKI 148
+ + + +
Sbjct: 110 KAVEEVLELDKPV 122
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 26.5 bits (58), Expect = 8.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 9 TLYECVNGVLNNAKVNKKRFLQ 30
+LY C+NG L++ KVN + +
Sbjct: 466 SLYACLNGYLDDVKVNYAKLYE 487
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.377
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,817,836
Number of extensions: 700047
Number of successful extensions: 890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 38
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)