RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8483
         (161 letters)



>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
           acidocaldarius [TaxId: 2285]}
          Length = 217

 Score = 97.9 bits (243), Expect = 1e-26
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 5   VSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKM 63
             +++L E +   L+     K+ F Q+VE+ +  K  D +K D +    V L   P    
Sbjct: 3   ADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAK 62

Query: 64  QVCILGDQQHCDEAKAANV-PFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPR 122
           +V ++   +  + AK A+    +  E L+KL   K+ VKKLA++ + FL +   +    R
Sbjct: 63  RVLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGR 122

Query: 123 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
           +LGP L   GKFP  L +   +++ I+  K ++  + K 
Sbjct: 123 ILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKD 161


>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 212

 Score = 94.1 bits (233), Expect = 3e-25
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 5   VSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKM 63
           + R+ L + V      AK   + F Q+ E    LK  D +K + R    V L H    + 
Sbjct: 1   MDREALLQAVKEARELAK--PRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEA 58

Query: 64  QVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIPRL 123
           ++ ++G      +A+   +  +  E +++L KNK+ ++K+AK +D F+A   L+  I R 
Sbjct: 59  KIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRY 118

Query: 124 LGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
           +G  L   GK P  +    ++   ++ +K T+    + 
Sbjct: 119 MGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRD 156


>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
           [TaxId: 274]}
          Length = 224

 Score = 63.5 bits (154), Expect = 2e-13
 Identities = 34/163 (20%), Positives = 67/163 (41%), Gaps = 9/163 (5%)

Query: 2   QSKVSRDTLYECVNGVLNNAKVNKKRFLQTVELQIGLKNYDPQKDKRFSGTVKLKHIPRP 61
             KV  + +Y          ++   +F +TVE+   L     + D+   GTV L H    
Sbjct: 7   LEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGK 66

Query: 62  KMQVCILGDQQHCDEAKAANVPFMDVEALKKLNKNKKLVKKLAKKYDAFLASDALIKQIP 121
           +++V  +   +   EA+ A   ++  E + +   +          +DA +A+  ++  + 
Sbjct: 67  QVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGW------MDFDAVVATPDVMGAVG 120

Query: 122 RLLGPGLNKAGKFPGLL--SHQESMTQKIDEVK-GTIKFQMKK 161
             LG  L   G  P     +   ++ + I E+K G I+F+  K
Sbjct: 121 SKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDK 163


>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 128

 Score = 25.8 bits (56), Expect = 2.0
 Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 70  DQQHCDEAKAANVPF-MDVEALKKLNKNKKLVKKLAKKYDAFLASD 114
             ++ +E    N+ F +  E LK       + +K    Y+ +++  
Sbjct: 31  RTEYSEE----NMLFWLACEELKAEANQHVVDEKARLIYEDYVSIL 72


>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 24.7 bits (54), Expect = 2.9
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 117 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKK 161
            +++  LL     KA K    +  +  M   ID++ G + F+ ++
Sbjct: 33  FEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETRE 77


>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 128

 Score = 25.0 bits (54), Expect = 3.6
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 70  DQQHCDEAKAANVPF-MDVEALKKLNKNKKLVKKLAKKYDAFLASD 114
             ++ +E    N+ F +  E  KK+    KL  K  K Y+ F++  
Sbjct: 31  KSEYSEE----NIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQ 72


>d1jbob_ a.1.1.3 (B:) Phycocyanin beta subunit {Synechococcus
           elongatus [TaxId: 32046]}
          Length = 172

 Score = 24.8 bits (54), Expect = 4.5
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 10/49 (20%)

Query: 85  MDVEALKKLNKN-KKLVKKLAKKYDAFLASDALIKQIPRLLGPGLNKAG 132
             ++A+ ++  N   +V           A+ AL  + P+L+ PG N   
Sbjct: 36  KRLDAVNRITSNASTIVAN---------AARALFAEQPQLIQPGGNAYT 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0704    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 560,952
Number of extensions: 25307
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 16
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.7 bits)