BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8484
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 76 CERECVFGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDC 128
C R C G CT +C CSPG+ + CEP C GVC PN C C
Sbjct: 416 CSRLCRNGYCTPTGKCCCSPGWEG-DFCRTAKCEPACRH--GGVCVRPNKCLC 465
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 61 CCEGYEDDH---GSCRPVCERECVFGSCTSPNQCTCSPGYV 98
C G+E D C P C G C PN+C C GY+
Sbjct: 433 CSPGWEGDFCRTAKCEPACRHG---GVCVRPNKCLCKKGYL 470
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 76 CERECVFGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDC 128
C R C G CT +C CSPG+ + CEP C GVC PN C C
Sbjct: 395 CSRLCRNGYCTPTGKCCCSPGWEG-DFCRTAKCEPACRH--GGVCVRPNKCLC 444
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 61 CCEGYEDDH---GSCRPVCERECVFGSCTSPNQCTCSPGYV 98
C G+E D C P C G C PN+C C GY+
Sbjct: 412 CSPGWEGDFCRTAKCEPACRHG---GVCVRPNKCLCKKGYL 449
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 76 CERECVFGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDC 128
C R C G CT +C CSPG+ + CEP C GVC PN C C
Sbjct: 395 CSRLCRNGYCTPTGKCCCSPGWEG-DFCRTAKCEPACRH--GGVCVRPNKCLC 444
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 61 CCEGYEDDH---GSCRPVCERECVFGSCTSPNQCTCSPGYV 98
C G+E D C P C G C PN+C C GY+
Sbjct: 412 CSPGWEGDFCRTAKCEPACRHG---GVCVRPNKCLCKKGYL 449
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 76 CERECVFGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDC 128
C R C G CT +C CSPG+ + CEP C GVC PN C C
Sbjct: 395 CSRLCRNGYCTPTGKCCCSPGWEG-DFCRTAKCEPACRH--GGVCVRPNKCLC 444
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 61 CCEGYEDDH---GSCRPVCERECVFGSCTSPNQCTCSPGYV 98
C G+E D C P C G C PN+C C GY+
Sbjct: 412 CSPGWEGDFCRTAKCEPACRHG---GVCVRPNKCLCKKGYL 449
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 76 CERECVFGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDC 128
C R C G CT +C CSPG+ + CEP C GVC PN C C
Sbjct: 416 CSRLCRNGYCTPTGKCCCSPGWEG-DFCRTAKCEPACRH--GGVCVRPNKCLC 465
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 61 CCEGYEDDH---GSCRPVCERECVFGSCTSPNQCTCSPGYV 98
C G+E D C P C G C PN+C C GY+
Sbjct: 433 CSPGWEGDFCRTAKCEPACRHG---GVCVRPNKCLCKKGYL 470
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 83 GSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDCLD 130
G C ++C CS GY + S +CEP C +G C PN C C +
Sbjct: 255 GKCIGKSKCKCSKGYQG-DLCSKPVCEPGCG--AHGTCHEPNKCQCQE 299
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 61 CCEGYEDDHGSCRPVCEREC-VFGSCTSPNQCTCSPGY 97
C +GY+ D S +PVCE C G+C PN+C C G+
Sbjct: 265 CSKGYQGDLCS-KPVCEPGCGAHGTCHEPNKCQCQEGW 301
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 30.0 bits (66), Expect = 0.40, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 74 PVCERECV-FGSCTSPNQCTCSPGY 97
P CE C GSC + +C C PGY
Sbjct: 186 PQCEEMCYGHGSCINGTKCICDPGY 210
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 74 PVCERECV-FGSCTSPNQCTCSPGY 97
P CE C GSC + +C C PGY
Sbjct: 186 PQCEEMCYGHGSCINGTKCICDPGY 210
>pdb|3A5P|A Chain A, Crystal Structure Of Hemagglutinin
pdb|3A5P|B Chain B, Crystal Structure Of Hemagglutinin
pdb|3A5P|C Chain C, Crystal Structure Of Hemagglutinin
pdb|3A5P|D Chain D, Crystal Structure Of Hemagglutinin
Length = 104
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 4 VPRTRTKTIPIPYTETYMDEYCMRQSWYFTYHCQKTRTAYSYKYK-----TEEYMEDTHV 58
VPR T T P T + + + QSWY T H R A+ Y+ T + +V
Sbjct: 28 VPRYVTVTGYAPITFSEIGPKTVHQSWYITVHNGDDR-AFQLGYEGGGVATATFTAGGNV 86
Query: 59 RICCEGYED 67
I G+ D
Sbjct: 87 SIST-GFGD 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,335,007
Number of Sequences: 62578
Number of extensions: 167062
Number of successful extensions: 436
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 48
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)