RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8484
(132 letters)
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 44.6 bits (105), Expect = 2e-06
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 62 CEGYEDDHGSCRPVCERECVFGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCS 121
C + C R C G CT +C CSPG+ CEP C GVC
Sbjct: 381 CRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDF-CRTAKCEPACRH--GGVCV 437
Query: 122 APNTCDC 128
PN C C
Sbjct: 438 RPNKCLC 444
Score = 31.1 bits (70), Expect = 0.077
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 61 CCEGYEDDH---GSCRPVCERECVFGSCTSPNQCTCSPGYV 98
C G+E D C P C G C PN+C C GY+
Sbjct: 412 CSPGWEGDFCRTAKCEPACRH---GGVCVRPNKCLCKKGYL 449
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 32.1 bits (73), Expect = 0.034
Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 61 CCEGYEDDHGSCRPVCERECV-FGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGV 119
+ C C G C C C G+ + +C P C G+
Sbjct: 137 PQNAIFFKTCQ-QAECPGGCRNGGFCNERRICECPDGFHGPH-CEKALCTPRC--MNGGL 192
Query: 120 CSAPNTCDC 128
C P C C
Sbjct: 193 CVTPGFCIC 201
Score = 31.0 bits (70), Expect = 0.10
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 83 GSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDC 128
G C ++C CS GY S +CEP C +G C PN C C
Sbjct: 255 GKCIGKSKCKCSKGYQGDL-CSKPVCEPGCGA--HGTCHEPNKCQC 297
Score = 29.4 bits (66), Expect = 0.26
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 74 PVCERECVF-GSCTSPNQCTCSPGYVVINEASPNICEPHCAECV---NGVCSAPNTCDC 128
+C C+ G C +P C C PG+ C+ G C P C C
Sbjct: 181 ALCTPRCMNGGLCVTPGFCICPPGF------YGVNCDKANCSTTCFNGGTCFYPGKCIC 233
Score = 29.0 bits (65), Expect = 0.45
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 83 GSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDCLD 130
G+C P +C C PG + C C G C + C C
Sbjct: 223 GTCFYPGKCICPPGLEGEQ-CEISKCPQPCRN--GGKCIGKSKCKCSK 267
Score = 25.2 bits (55), Expect = 7.3
Identities = 12/64 (18%), Positives = 14/64 (21%), Gaps = 6/64 (9%)
Query: 70 GSCRPVCERECVFGSCTSPNQ---CTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTC 126
G V E S T C C G C+ C
Sbjct: 111 GKQDGVAAFEVDVIVMNSEGNTILKTPQNAIF-FKTCQQAECPGGCRN--GGFCNERRIC 167
Query: 127 DCLD 130
+C D
Sbjct: 168 ECPD 171
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 31.2 bits (71), Expect = 0.061
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 83 GSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDC 128
+C TC G++ + IC C+ +G C P C C
Sbjct: 44 YACDQNGNKTCMEGWMGPE-CNRAICRQGCSPK-HGSCKLPGDCRC 87
Score = 28.5 bits (64), Expect = 0.47
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 83 GSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDC 128
GSC P C C G+ + C PH CV+G+C+ P C C
Sbjct: 77 GSCKLPGDCRCQYGW---QGLYCDKCIPHPG-CVHGICNEPWQCLC 118
Score = 27.7 bits (62), Expect = 0.95
Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 2/51 (3%)
Query: 80 CVFGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDCLD 130
GS + TC Y C P + C C++
Sbjct: 8 HHHGSIEGRSAVTCDDYYYGFG--CNKFCRPRDDFFGHYACDQNGNKTCME 56
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 31.0 bits (69), Expect = 0.099
Identities = 10/107 (9%), Positives = 25/107 (23%)
Query: 23 EYCMRQSWYFTYHCQKTRTAYSYKYKTEEYMEDTHVRICCEGYEDDHGSCRPVCERECVF 82
E + T + + + ++ C G +C
Sbjct: 120 EKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFV 179
Query: 83 GSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDCL 129
C + + C + + +EC+ + C+
Sbjct: 180 ERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCV 226
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 30.3 bits (67), Expect = 0.19
Identities = 8/69 (11%), Positives = 17/69 (24%)
Query: 61 CCEGYEDDHGSCRPVCERECVFGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVC 120
C G +C C + + C + + +EC+
Sbjct: 158 ICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCS 217
Query: 121 SAPNTCDCL 129
+ C+
Sbjct: 218 QPDDPTKCV 226
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 29.3 bits (65), Expect = 0.35
Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 4/75 (5%)
Query: 60 ICCEGYEDDHGSCRPVCERECVFGSCT-SPNQCTCSPGYVVINEASPNICE---PHCAEC 115
++ GSCR G QC C V CE +C
Sbjct: 463 TQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERY 522
Query: 116 VNGVCSAPNTCDCLD 130
VC P C
Sbjct: 523 NGQVCGGPGRGLCFC 537
Score = 27.0 bits (59), Expect = 2.4
Identities = 7/59 (11%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 71 SCRPVCERECVFGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCS-APNTCDC 128
+ +C + C Y + + + + E + C P+ C
Sbjct: 626 PGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDE--SRECVAGPDGCGE 682
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 29.2 bits (64), Expect = 0.36
Identities = 8/69 (11%), Positives = 15/69 (21%), Gaps = 1/69 (1%)
Query: 61 CCEGYEDDHGSCRPVCERECVFGSCTSPNQCTCSPGYVVIN-EASPNICEPHCAECVNGV 119
+ + D+ C C C C + + + + N
Sbjct: 522 KQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRA 581
Query: 120 CSAPNTCDC 128
S N
Sbjct: 582 PSNQNWLTV 590
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 27.6 bits (60), Expect = 1.1
Identities = 15/117 (12%), Positives = 24/117 (20%), Gaps = 15/117 (12%)
Query: 25 CMRQSWYFTYHCQKTRTAYSYKYKTEEYMEDTHVRICCEGYEDDHGSCRPVCERECVFGS 84
M +W + S + M D V + G S V
Sbjct: 55 SMNFTWQAAGQAEYFYEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQD 114
Query: 85 CTSPNQCTCSP-------------GYVVINEASPNICEPHCAECVNGVCSAPNTCDC 128
+ + + C C G C+ C+C
Sbjct: 115 GVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRN--GGFCNERRICEC 169
Score = 26.4 bits (57), Expect = 2.4
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 61 CCEGYEDDHGSCRPVCERECV-FGSCTSPNQCTCSPGY 97
+ + C C G C C C G+
Sbjct: 136 TPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGF 173
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 27.4 bits (60), Expect = 1.7
Identities = 14/70 (20%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 59 RICCEGYEDDHGSCRPVCERECVFGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNG 118
+I + E D SC C S C C + C
Sbjct: 515 KITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCT-TRTDTCMSSNGL 573
Query: 119 VCSAPNTCDC 128
+CS C+C
Sbjct: 574 LCSGRGKCEC 583
Score = 25.4 bits (55), Expect = 7.5
Identities = 11/69 (15%), Positives = 15/69 (21%), Gaps = 8/69 (11%)
Query: 61 CCEGYEDDHGSCRPVCERECVFGSCT-SPNQCTCSPGYVVINEASPNICEPHCAECVNGV 119
+ C P + QC C I +C EC +
Sbjct: 475 EEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSD------FGKITGKYC-ECDDFS 527
Query: 120 CSAPNTCDC 128
C C
Sbjct: 528 CVRYKGEMC 536
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 26.9 bits (58), Expect = 2.4
Identities = 11/60 (18%), Positives = 12/60 (20%), Gaps = 2/60 (3%)
Query: 68 DHGSCRPVCERECV-FGSCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTC 126
D C C G C S C C GY + H
Sbjct: 186 DGVYISEPCPSYCSGHGDCIS-GVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLW 244
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo
sapiens}
Length = 220
Score = 26.2 bits (58), Expect = 3.0
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 83 GSCTSPNQCTCSPGYV 98
GS P +C C V
Sbjct: 1 GSLACPEKCRCEGTTV 16
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 26.6 bits (58), Expect = 3.1
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 62 CEGYEDDHGSCRPVCERECVFGSCTSPNQCTCSPGYV 98
CE +G C+ +C + C C G +
Sbjct: 270 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 306
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 4.7
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 17 TETYMDEYCMRQSWYFTYH 35
T+ Y +E +R Y TYH
Sbjct: 166 TDDYFEE--LR-DLYQTYH 181
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 25.0 bits (54), Expect = 8.1
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 2/55 (3%)
Query: 61 CCEGYEDDHGSCRPVCERECVFGSCTSPNQCTCSPGYVVINEASPNICEPHCAEC 115
+ G C C+ QC C G + + C+ +
Sbjct: 262 RQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKL--LENGKTCKDGNSHH 314
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.477
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,074,086
Number of extensions: 116564
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 337
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)