RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8484
         (132 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 25.0 bits (54), Expect = 3.2
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 20  YMDEYCMRQSWYFTYHCQKTRTA-YSYKYKTEEYMEDTHVRICCEGYEDDHGSCRPVCER 78
           + +E   +    F     K+    Y  +    + +E  + +  CE  E        + + 
Sbjct: 397 FCNE---KLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDE 453

Query: 79  ECVFGSCT 86
            C+    T
Sbjct: 454 ACLIAKST 461


>d1cbya_ d.103.1.1 (A:) Mosquitocidal delta-endotoxin CytB {Bacillus
           thuringiensis, strain Kyushuensis [TaxId: 1428]}
          Length = 227

 Score = 24.4 bits (53), Expect = 4.7
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 29  SWYFTYHCQKTRTAYSYK 46
           +W F +      T+Y Y 
Sbjct: 135 AWIFWHSLSAHNTSYYYN 152


>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 144

 Score = 24.2 bits (52), Expect = 5.2
 Identities = 9/65 (13%), Positives = 15/65 (23%), Gaps = 2/65 (3%)

Query: 19  TYMDEYCMRQSWYFTYHCQKTRTAYSYKYKTEEYMEDTH--VRICCEGYEDDHGSCRPVC 76
            Y   + M  S+                 K EE  +     ++       D         
Sbjct: 63  IYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDD 122

Query: 77  ERECV 81
            +E V
Sbjct: 123 PKEEV 127


>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Sulfolobus tokodaii [TaxId: 111955]}
          Length = 336

 Score = 24.4 bits (52), Expect = 5.4
 Identities = 13/93 (13%), Positives = 23/93 (24%), Gaps = 8/93 (8%)

Query: 6   RTRTKTIP-IPYTETYMDEYCMRQSWYFTYHCQKTRTAYSYKYKTEEYMEDTHVRICCEG 64
               K+IP I      +D   +R++    Y   +   +       +        RI   G
Sbjct: 94  IRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVG 153

Query: 65  YEDDHGSCRPVCERECVFGSCTSPNQCTCSPGY 97
                   + V             N    + G 
Sbjct: 154 LNFALRRRKKVT-------CVHKANVMRITDGL 179


>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Trichoderma reesei,
           Endoglucanase I [TaxId: 51453]}
          Length = 371

 Score = 24.0 bits (52), Expect = 7.0
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)

Query: 84  SCTSPNQCTCSPGYVVINEASPNICEPHCAECVNGVCSAPNTCDCLD 130
            CT    C      VV++     + + +   C        NT  C D
Sbjct: 18  KCTKSGGCVAQDTSVVLDWNYRWMHDANYNSCTVN--GGVNTTLCPD 62


>d1lqya_ d.167.1.1 (A:) Peptide deformylase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 184

 Score = 23.6 bits (50), Expect = 9.7
 Identities = 14/119 (11%), Positives = 30/119 (25%), Gaps = 5/119 (4%)

Query: 3   GVPRTRTKTIPIPYTETYMDEYCMRQSWYFTYHCQKTRTAYSYKYKTEEYMEDTHVRICC 62
           G P  R    P+P   +  D+  ++    +    Q    A  Y  +    +    + +  
Sbjct: 11  GHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSK 70

Query: 63  EGYEDDHGSCRPVCERECVFGSCTSPN-----QCTCSPGYVVINEASPNICEPHCAECV 116
                             +F      +       T   G + ++   P     +    V
Sbjct: 71  RMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITV 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.477 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 558,661
Number of extensions: 28538
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 92
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.5 bits)