BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8488
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 227 bits (578), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/126 (85%), Positives = 116/126 (92%), Gaps = 7/126 (5%)
Query: 21 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 80
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 41 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 93
Query: 81 RRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAM 140
RRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM
Sbjct: 94 RRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAM 153
Query: 141 VDLKPD 146
+D+KPD
Sbjct: 154 LDVKPD 159
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 226 bits (577), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/126 (85%), Positives = 116/126 (92%), Gaps = 7/126 (5%)
Query: 21 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 80
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 25 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 77
Query: 81 RRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAM 140
RRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM
Sbjct: 78 RRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAM 137
Query: 141 VDLKPD 146
+D+KPD
Sbjct: 138 LDVKPD 143
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 226 bits (577), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/126 (85%), Positives = 116/126 (92%), Gaps = 7/126 (5%)
Query: 21 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 80
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 42 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 94
Query: 81 RRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAM 140
RRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM
Sbjct: 95 RRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAM 154
Query: 141 VDLKPD 146
+D+KPD
Sbjct: 155 LDVKPD 160
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 226 bits (577), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/126 (85%), Positives = 116/126 (92%), Gaps = 7/126 (5%)
Query: 21 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 80
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 41 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 93
Query: 81 RRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAM 140
RRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM
Sbjct: 94 RRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAM 153
Query: 141 VDLKPD 146
+D+KPD
Sbjct: 154 LDVKPD 159
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 226 bits (576), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/126 (85%), Positives = 116/126 (92%), Gaps = 7/126 (5%)
Query: 21 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 80
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 21 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 73
Query: 81 RRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAM 140
RRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM
Sbjct: 74 RRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAM 133
Query: 141 VDLKPD 146
+D+KPD
Sbjct: 134 LDVKPD 139
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 224 bits (570), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/126 (84%), Positives = 115/126 (91%), Gaps = 7/126 (5%)
Query: 21 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 80
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 20 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 72
Query: 81 RRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAM 140
RRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFV DLQ+LLGY+PEELHAM
Sbjct: 73 RRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLLGYTPEELHAM 132
Query: 141 VDLKPD 146
+D+KPD
Sbjct: 133 LDVKPD 138
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 222 bits (565), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 106/126 (84%), Positives = 114/126 (90%), Gaps = 7/126 (5%)
Query: 21 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 80
V PA+ LAGY TGSGPIQLWQFLLELLTDK+ Q+FISWTGDGWEFKL+DPDEVA
Sbjct: 50 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVA 102
Query: 81 RRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAM 140
RRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFV DLQ+LLGY+PEELHAM
Sbjct: 103 RRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLLGYTPEELHAM 162
Query: 141 VDLKPD 146
+D+KPD
Sbjct: 163 LDVKPD 168
>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|F Chain F, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K79|A Chain A, Ets-1(331-440)+ggaa Duplex
pdb|1K79|D Chain D, Ets-1(331-440)+ggaa Duplex
pdb|1K7A|A Chain A, Ets-1(331-440)+ggag Duplex
pdb|1K7A|D Chain D, Ets-1(331-440)+ggag Duplex
Length = 110
Score = 217 bits (553), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/108 (92%), Positives = 107/108 (99%)
Query: 39 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 98
GSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLS
Sbjct: 1 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLS 60
Query: 99 RGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPD 146
RGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM+D+KPD
Sbjct: 61 RGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKPD 108
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25
Structures
pdb|2STW|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX,
Restrained Regularized Mean Structure
Length = 96
Score = 182 bits (462), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 88/101 (87%), Positives = 92/101 (91%), Gaps = 7/101 (6%)
Query: 23 PASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARR 82
PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVARR
Sbjct: 3 PAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARR 55
Query: 83 WGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFV 123
WG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFV
Sbjct: 56 WGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFV 96
>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 110
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 79/99 (79%)
Query: 43 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 102
IQLWQFLLELLTDK + ISW GD EFKL P+ VA++WG RKNKP MNYEKLSR LR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 103 YYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMV 141
YYYD ++I K GKR+VY+FVCDL+TL+GYS EL+ +V
Sbjct: 61 YYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLV 99
>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|C Chain C, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|D Chain D, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4B06|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1
Complexed With Dna
Length = 106
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 74/98 (75%)
Query: 34 GPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMN 93
GP G +QLWQFL+ LL D + FI+WTG G EFKL +P+EVARRWGI+KN+P MN
Sbjct: 3 GPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMN 62
Query: 94 YEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLG 131
Y+KLSR LRYYY+K I+ K AG+RYVY+FVCD + L
Sbjct: 63 YDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFS 100
>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
pdb|2YPR|B Chain B, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
Length = 102
Score = 129 bits (324), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Query: 39 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 98
GSG IQLWQFLLELL D+ I+W G EFKLTDPDEVARRWG RK+KP MNY+KLS
Sbjct: 4 GSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLS 63
Query: 99 RGLRYYYDKNIIHKTAGKRYVYRFVCDLQTL 129
R LRYYYDKNI+ K GKRY YRF D Q L
Sbjct: 64 RALRYYYDKNIMSKVHGKRYAYRF--DFQGL 92
>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1
Length = 98
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 67/84 (79%)
Query: 39 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 98
GSG IQLWQFLLELL+D + I+W G EFK+TDPDEVARRWG RK+KP MNY+KLS
Sbjct: 2 GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61
Query: 99 RGLRYYYDKNIIHKTAGKRYVYRF 122
R LRYYYDKNI+ K GKRY Y+F
Sbjct: 62 RALRYYYDKNIMTKVHGKRYAYKF 85
>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
pdb|1DUX|F Chain F, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
Length = 94
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Query: 42 PIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 100
+ LWQFLL+LL ++ ISWT DG EFKL D +EVAR WG+RKNK MNY+KLSR
Sbjct: 4 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 63
Query: 101 LRYYYDKNIIHKTAGKRYVYRFV 123
LRYYYDKNII K +G+++VY+FV
Sbjct: 64 LRYYYDKNIIRKVSGQKFVYKFV 86
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 157
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 48/63 (76%)
Query: 61 FISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVY 120
I WT + +FKL +EVAR WGIRKNKP MNY+KLSR LRYYY KNII K G+++VY
Sbjct: 24 MICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVY 83
Query: 121 RFV 123
+FV
Sbjct: 84 KFV 86
>pdb|1BC7|C Chain C, Serum Response Factor Accessory Protein 1a (Sap-1)DNA
Complex
pdb|1BC8|C Chain C, Structures Of Sap-1 Bound To Dna Sequences From The E74
And C-Fos Promoters Provide Insights Into How Ets
Proteins Discriminate Between Related Dna Targets
pdb|1K6O|A Chain A, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 93
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 48/63 (76%)
Query: 61 FISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVY 120
I WT + +FKL +EVAR WGIRKNKP MNY+KLSR LRYYY KNII K G+++VY
Sbjct: 23 MICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVY 82
Query: 121 RFV 123
+FV
Sbjct: 83 KFV 85
>pdb|1YO5|C Chain C, Analysis Of The 2.0a Crystal Structure Of The Protein-Dna
Complex Of Human Pdef Ets Domain Bound To The Prostate
Specific Antigen Regulatory Site
Length = 97
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 39 GSGPIQLWQFLLELLTD-KTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEK 96
GS PI LWQFL ELL + FI W + FK+ D +VAR WGIRKN+P MNY+K
Sbjct: 7 GSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDK 66
Query: 97 LSRGLRYYYDKNIIHK-TAGKRYVYRFV 123
LSR +R YY K II K +R VY+FV
Sbjct: 67 LSRSIRQYYKKGIIRKPDISQRLVYQFV 94
>pdb|2DAO|A Chain A, Solution Structure Of Ets Domain Transcriptional Factor
Etv6 Protein
Length = 118
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 29 GYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRK 87
G SGS C LW ++ +LL+D + FI W + F++ DP+ +AR WG K
Sbjct: 1 GSSGSSGCRL------LWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHK 54
Query: 88 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFV 123
N+ M YEK+SR LR+YY NII K G+R ++RF+
Sbjct: 55 NRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFM 90
>pdb|2LF7|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To Q436
Length = 106
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 39 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 97
GS LW ++ +LL+D + FI W + F++ DP+ +AR WG KN+ M YEK+
Sbjct: 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60
Query: 98 SRGLRYYYDKNIIHKTAGKRYVYRFV 123
SR LR+YY NII K G+R ++RF+
Sbjct: 61 SRALRHYYKLNIIRKEPGQRLLFRFM 86
>pdb|2LF8|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To R458
Length = 128
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 39 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 97
GS LW ++ +LL+D + FI W + F++ DP+ +AR WG KN+ M YEK+
Sbjct: 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60
Query: 98 SRGLRYYYDKNIIHKTAGKRYVYRFV 123
SR LR+YY NII K G+R ++RF+
Sbjct: 61 SRALRHYYKLNIIRKEPGQRLLFRFM 86
>pdb|3JTG|A Chain A, Crystal Structure Of Mouse Elf3 C-Terminal Dna-Binding
Domai Complex With Type Ii Tgf-Beta Receptor Promoter
Dna
Length = 103
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 44 QLWQFLLELLTD-KTCQAFISWTG--DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 100
LW+F+ ++L + + + W +G FK + VA+ WG +K M YEKLSR
Sbjct: 6 HLWEFIRDILIHPELNEGLMKWENRHEG-VFKFLRSEAVAQLWGQKKKNSNMTYEKLSRA 64
Query: 101 LRYYYDKNIIHKTAGKRYVYRF 122
+RYYY + I+ + G+R VY+F
Sbjct: 65 MRYYYKREILERVDGRRLVYKF 86
>pdb|1WWX|A Chain A, Solution Structure Of The Ets-Domain Of The Ets Domain
Transcription Factor
Length = 107
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 44 QLWQFLLELLT--DKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 100
LW+F+ +LL ++ C + W + F++ + +A+ WG RK +M YEKLSR
Sbjct: 10 HLWEFVRDLLLSPEENC-GILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRA 68
Query: 101 LRYYYDKNIIHKTAGKRYVYRF 122
LRYYY I+ + +R VY+F
Sbjct: 69 LRYYYKTGILERV-DRRLVYKF 89
>pdb|1PUE|E Chain E, Pu.1 Ets Domain-Dna Complex
pdb|1PUE|F Chain F, Pu.1 Ets Domain-Dna Complex
Length = 89
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 42 PIQLWQFLLELLTDKTCQAFISWTGD---GWEFKLTDPDEVARRWGIRK-NKPKMNYEKL 97
I+L+QFLL+LL + I W ++F + +A RWGI+K N+ KM YEK+
Sbjct: 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60
Query: 98 SRGLRYYYDKNIIHKTAGKRYVYRFVCDL 126
+R LR Y + K K+ Y+F ++
Sbjct: 61 ARALRNYGKTGEVKKVK-KKLTYQFSGEV 88
>pdb|3S0T|A Chain A, Crystal Structure Of The Cofa Type Iv Pilin Subunit From
Enterotoxigenic E. Coli
pdb|3S0T|B Chain B, Crystal Structure Of The Cofa Type Iv Pilin Subunit From
Enterotoxigenic E. Coli
Length = 184
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 YSGSGPCFTGSGPIQLWQFLLEL--LTDKTCQAFISWTGDGWEF 71
Y G G T SG F +EL L+ + C++ + GD WE+
Sbjct: 78 YIGIGGAITSSGSTINKGFAMELNGLSQEQCRSILGQVGDNWEY 121
>pdb|3VOR|A Chain A, Crystal Structure Analysis Of The Cofa
Length = 182
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 30 YSGSGPCFTGSGPIQLWQFLLEL--LTDKTCQAFISWTGDGWEF 71
Y G G T SG F +EL L+ + C++ + GD WE+
Sbjct: 76 YIGIGGAITSSGSTINKGFAMELNGLSQEQCRSILGQVGDNWEY 119
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 90 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ-TLLGYSPE 135
P++ EK +RYY +++ + R+ Y DLQ L GY E
Sbjct: 403 PEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIE 449
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 EFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHK 112
E+ TD V + + + ++ +L RGL+Y + N++H+
Sbjct: 102 EYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHR 144
>pdb|1PRE|A Chain A, Proaerolysin
pdb|1PRE|B Chain B, Proaerolysin
Length = 470
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 20/72 (27%)
Query: 46 WQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMN-------YEKLS 98
++F ++ D T F+ W G+ W T PD N+P N Y+ +
Sbjct: 306 YEFKADVSYDLTLSGFLRWGGNAW---YTHPD----------NRPNWNHTFVIGPYKDKA 352
Query: 99 RGLRYYYDKNII 110
+RY +DK I
Sbjct: 353 SSIRYQWDKRYI 364
>pdb|1Z52|A Chain A, Proaerolysin Mutant W373l
pdb|1Z52|B Chain B, Proaerolysin Mutant W373l
Length = 470
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 20/72 (27%)
Query: 46 WQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMN-------YEKLS 98
++F ++ D T F+ W G+ W T PD N+P N Y+ +
Sbjct: 306 YEFKADVSYDLTLSGFLRWGGNAW---YTHPD----------NRPNWNHTFVIGPYKDKA 352
Query: 99 RGLRYYYDKNII 110
+RY +DK I
Sbjct: 353 SSIRYQWDKRYI 364
>pdb|3C0M|A Chain A, Crystal Structure Of The Proaerolysin Mutant Y221g
pdb|3C0M|B Chain B, Crystal Structure Of The Proaerolysin Mutant Y221g
pdb|3C0N|A Chain A, Crystal Structure Of The Proaerolysin Mutant Y221g At 2.2
A
pdb|3C0N|B Chain B, Crystal Structure Of The Proaerolysin Mutant Y221g At 2.2
A
pdb|3C0O|A Chain A, Crystal Structure Of The Proaerolysin Mutant Y221g
Complexed With Mannose-6-Phosphate
pdb|3C0O|B Chain B, Crystal Structure Of The Proaerolysin Mutant Y221g
Complexed With Mannose-6-Phosphate
Length = 470
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 20/72 (27%)
Query: 46 WQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMN-------YEKLS 98
++F ++ D T F+ W G+ W T PD N+P N Y+ +
Sbjct: 306 YEFKADVSYDLTLSGFLRWGGNAW---YTHPD----------NRPNWNHTFVIGPYKDKA 352
Query: 99 RGLRYYYDKNII 110
+RY +DK I
Sbjct: 353 SSIRYQWDKRYI 364
>pdb|3G4N|A Chain A, Crystal Structure Of The Activated Aerolysin Mutant H132d
pdb|3G4N|B Chain B, Crystal Structure Of The Activated Aerolysin Mutant H132d
Length = 470
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 20/72 (27%)
Query: 46 WQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMN-------YEKLS 98
++F ++ D T F+ W G+ W T PD N+P N Y+ +
Sbjct: 306 YEFKADVSYDLTLSGFLRWGGNAW---YTHPD----------NRPNWNHTFVIGPYKDKA 352
Query: 99 RGLRYYYDKNII 110
+RY +DK I
Sbjct: 353 SSIRYQWDKRYI 364
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 101 LRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDK 147
LRY+ +N+ K + V F+C+L L Y + D+KPD
Sbjct: 102 LRYHLQQNVHFK---EETVKLFICELVMALDYLQNQRIIHRDMKPDN 145
>pdb|3G4O|A Chain A, Crystal Structure Of The Activated Aerolysin Mutant H132n
pdb|3G4O|B Chain B, Crystal Structure Of The Activated Aerolysin Mutant H132n
Length = 470
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 20/72 (27%)
Query: 46 WQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMN-------YEKLS 98
++F ++ D T F+ W G+ W T PD N+P N Y+ +
Sbjct: 306 YEFKADVSYDLTLSGFLRWGGNAW---YTHPD----------NRPNWNHTFVIGPYKDKA 352
Query: 99 RGLRYYYDKNII 110
+RY +DK I
Sbjct: 353 SSIRYQWDKRYI 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,953,330
Number of Sequences: 62578
Number of extensions: 203703
Number of successful extensions: 522
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 481
Number of HSP's gapped (non-prelim): 40
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)