Query psy8488
Match_columns 150
No_of_seqs 106 out of 292
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 20:09:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gvj_A C-ETS-1 protein, P54; t 100.0 6.8E-49 2.3E-53 303.3 10.5 126 17-149 21-146 (146)
2 2nny_A C-ETS-1 protein, P54; p 100.0 5.6E-48 1.9E-52 304.4 9.8 126 17-149 46-171 (171)
3 4avp_A ETS translocation varia 100.0 2.1E-45 7.3E-50 271.3 8.2 99 34-132 3-101 (106)
4 1awc_A Protein (GA binding pro 100.0 2.5E-44 8.4E-49 266.9 11.0 100 43-142 1-100 (110)
5 1bc8_C SAP-1, protein (SAP-1 E 100.0 2.9E-43 1E-47 254.6 8.7 89 41-129 3-91 (93)
6 2dao_A Transcription factor ET 100.0 5.9E-43 2E-47 262.2 8.2 107 38-144 4-111 (118)
7 2lf8_A Transcription factor ET 100.0 1.2E-43 4E-48 268.8 0.0 106 39-144 1-107 (128)
8 1fli_A FLI-1; transcription/DN 100.0 5.6E-42 1.9E-46 249.9 5.3 87 38-124 1-87 (98)
9 2ypr_A Protein FEV; transcript 100.0 3.7E-41 1.3E-45 247.2 9.0 87 38-124 3-89 (102)
10 1hbx_G ETS-domain protein ELK- 100.0 5E-41 1.7E-45 261.5 7.8 97 40-137 3-99 (157)
11 1yo5_C SAM pointed domain cont 100.0 5.9E-41 2E-45 244.2 6.8 89 37-125 5-96 (97)
12 1wwx_A E74-like factor 5 ESE-2 100.0 3E-40 1E-44 244.1 9.0 91 37-128 3-95 (107)
13 3jtg_A ETS-related transcripti 100.0 2.9E-40 9.9E-45 242.8 7.3 93 42-137 4-98 (103)
14 1pue_E Protein (transcription 100.0 4.4E-39 1.5E-43 231.2 7.9 84 42-126 1-88 (89)
15 2ldu_A Heat shock factor prote 96.5 0.0023 7.7E-08 47.5 4.0 67 41-109 16-83 (125)
16 1hks_A Heat-shock transcriptio 96.5 0.002 6.9E-08 46.3 3.5 65 44-109 6-70 (106)
17 3hts_B Heat shock transcriptio 95.9 0.01 3.5E-07 42.8 4.8 65 41-106 11-75 (102)
18 2irf_G IRF-2, interferon regul 70.5 8.3 0.00029 27.9 5.3 82 41-123 4-112 (113)
19 1okr_A MECI, methicillin resis 68.3 20 0.00068 24.1 6.7 49 75-126 26-75 (123)
20 2dll_A Interferon regulatory f 60.0 5.5 0.00019 29.1 2.6 85 41-126 5-116 (121)
21 2o61_A Transcription factor P6 54.0 36 0.0012 30.8 7.3 92 37-129 420-536 (540)
22 2o61_A Transcription factor P6 53.5 37 0.0013 30.7 7.3 98 35-133 286-417 (540)
23 1sd4_A Penicillinase repressor 46.6 54 0.0018 21.9 5.8 47 75-124 26-73 (126)
24 2zhg_A Redox-sensitive transcr 46.0 13 0.00046 27.4 2.8 58 75-144 13-80 (154)
25 3qu6_A IRF3 protein; helix-tur 44.4 13 0.00045 27.1 2.5 66 39-105 5-87 (116)
26 1q06_A Transcriptional regulat 42.2 9.5 0.00033 27.5 1.4 46 99-144 15-70 (135)
27 1p6r_A Penicillinase repressor 39.9 41 0.0014 21.2 4.1 51 75-128 25-76 (82)
28 2vz4_A Tipal, HTH-type transcr 38.9 18 0.00061 24.8 2.3 44 99-143 16-70 (108)
29 3hh0_A Transcriptional regulat 37.7 15 0.0005 26.9 1.8 58 76-144 7-74 (146)
30 1r8e_A Multidrug-efflux transp 35.3 18 0.0006 28.1 2.0 56 77-143 9-75 (278)
31 3gp4_A Transcriptional regulat 34.7 13 0.00044 27.1 1.1 56 77-143 6-71 (142)
32 3gpv_A Transcriptional regulat 32.7 17 0.00057 26.6 1.4 57 76-143 19-85 (148)
33 1r8d_A Transcription activator 31.1 28 0.00096 23.7 2.3 44 99-143 17-71 (109)
34 3qu3_A IRF-7, interferon regul 30.4 29 0.001 25.9 2.4 87 40-127 10-132 (137)
35 2fu4_A Ferric uptake regulatio 29.9 46 0.0016 20.9 3.1 44 76-121 36-81 (83)
36 1vd2_A Protein kinase C, IOTA 28.6 52 0.0018 22.6 3.3 51 90-145 24-75 (89)
37 2dg6_A Putative transcriptiona 28.2 32 0.0011 27.1 2.4 48 99-146 15-73 (222)
38 2g9w_A Conserved hypothetical 26.4 1.6E+02 0.0055 20.3 6.4 45 75-122 26-71 (138)
39 1sfx_A Conserved hypothetical 21.7 1.2E+02 0.004 19.1 3.9 59 75-140 36-97 (109)
40 2k4b_A Transcriptional regulat 21.0 97 0.0033 21.1 3.6 43 76-121 52-95 (99)
41 2fe3_A Peroxide operon regulat 20.4 89 0.003 22.2 3.4 44 87-130 49-94 (145)
42 2jml_A DNA binding domain/tran 20.3 28 0.00097 22.4 0.6 48 98-145 19-78 (81)
43 1knv_A BSE634I restriction end 20.2 1.3E+02 0.0045 25.1 4.8 47 57-105 6-54 (293)
44 3qao_A LMO0526 protein, MERR-l 20.2 53 0.0018 26.0 2.3 46 98-143 17-72 (249)
No 1
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=100.00 E-value=6.8e-49 Score=303.34 Aligned_cols=126 Identities=87% Similarity=1.482 Sum_probs=116.3
Q ss_pred CCCCCCchhhhcCCCCCCCCcCCCCceehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHH
Q psy8488 17 KPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEK 96 (150)
Q Consensus 17 ~~~p~~p~~~~~~~~~~~~~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~Ydk 96 (150)
...|.+|.+.+++. .++|+++||+||++||.|+++++||+|||+++||+++||++||+|||.+||+++|||||
T Consensus 21 ~~~p~~p~~~~~~~-------~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeK 93 (146)
T 1gvj_A 21 KDKPVIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEK 93 (146)
T ss_dssp CSCCSSCHHHHHHH-------HTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHH
T ss_pred CCCCCCCcccccCC-------CCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHH
Confidence 46788999888775 56789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcceeEecccceeEEEeccchhhhhcCCHHHHHHhcccCCCCCC
Q psy8488 97 LSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKD 149 (150)
Q Consensus 97 lsRsLR~yY~kgIl~Kv~g~rl~Y~F~~ep~~~~~mt~eel~~~i~~~~~~~~ 149 (150)
|||||||||++|||.||+|+|++|+|++++..++||++|||+.+++++|+.+|
T Consensus 94 LSRaLRyYY~k~ii~Kv~GkrlvY~F~~~~~~l~g~~~~e~~~~~~~~p~~~~ 146 (146)
T 1gvj_A 94 LSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKPDADE 146 (146)
T ss_dssp HHHHHHHHHHTTSEEECTTSSSEEEECSCHHHHHSCCHHHHHHHTTCC-----
T ss_pred HHHHHHHHHhcCcEEecCCCeEEEEeccchHhhcCCCHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999865
No 2
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=100.00 E-value=5.6e-48 Score=304.35 Aligned_cols=126 Identities=85% Similarity=1.421 Sum_probs=114.4
Q ss_pred CCCCCCchhhhcCCCCCCCCcCCCCceehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHH
Q psy8488 17 KPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEK 96 (150)
Q Consensus 17 ~~~p~~p~~~~~~~~~~~~~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~Ydk 96 (150)
...|.+|.+.+++. +++|+++||+||++||.|+++++||+|||+++||+++||++||+|||.+|||++|||||
T Consensus 46 ~~~P~~p~~~l~g~-------~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeK 118 (171)
T 2nny_A 46 KDKPVIPAAALAGY-------TGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEK 118 (171)
T ss_dssp CSSCSSCHHHHHHH-------HTCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHH
T ss_pred CCCCCCCcccccCC-------CCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHH
Confidence 45677777777664 57799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcceeEecccceeEEEeccchhhhhcCCHHHHHHhcccCCCCCC
Q psy8488 97 LSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKD 149 (150)
Q Consensus 97 lsRsLR~yY~kgIl~Kv~g~rl~Y~F~~ep~~~~~mt~eel~~~i~~~~~~~~ 149 (150)
|||||||||++|||+||.|+|++|+|++++..++|||+|||+.+++++|+.+|
T Consensus 119 LSRaLRyYY~k~ii~Kv~GkrlvY~F~~d~~~l~g~~~~el~~~~~~~p~~~~ 171 (171)
T 2nny_A 119 LSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLLGYTPEELHAMLDVKPDADE 171 (171)
T ss_dssp HHHHHHGGGTTTSEEECTTSTTEEEECTTHHHHHCCCHHHHHHHTTCC-----
T ss_pred HHHHHHHHHhcCcEeecCCCeEEEEeCCChHHHcCCCHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998864
No 3
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=100.00 E-value=2.1e-45 Score=271.31 Aligned_cols=99 Identities=61% Similarity=1.183 Sum_probs=90.0
Q ss_pred CCCcCCCCceehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEec
Q psy8488 34 GPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKT 113 (150)
Q Consensus 34 ~~~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv 113 (150)
||.++++|+++|||||++||+|+++++||+|||++++|+++||++||+|||.+||+++||||||||||||||++|||+||
T Consensus 3 ~~~~~~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv 82 (106)
T 4avp_A 3 GPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKV 82 (106)
T ss_dssp --------CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred CCCCCCCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEec
Confidence 67789999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEeccchhhhhcC
Q psy8488 114 AGKRYVYRFVCDLQTLLGY 132 (150)
Q Consensus 114 ~g~rl~Y~F~~ep~~~~~m 132 (150)
+|++++|+|+|+|.++++|
T Consensus 83 ~G~r~vYkF~~~p~~l~~~ 101 (106)
T 4avp_A 83 AGERYVYKFVCDPEALFSM 101 (106)
T ss_dssp TTCSSEEEECCSHHHHHHH
T ss_pred CCCeEEEEecCCHHHHHhc
Confidence 9999999999999999987
No 4
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=2.5e-44 Score=266.93 Aligned_cols=100 Identities=67% Similarity=1.176 Sum_probs=97.6
Q ss_pred eehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccceeEEEe
Q psy8488 43 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRF 122 (150)
Q Consensus 43 ~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~rl~Y~F 122 (150)
++||+||++||.|+++++||+|||++++|+++||++||++||.+||+++||||||||||||||++|||.||+|++++|+|
T Consensus 1 i~LwqFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~F 80 (110)
T 1awc_A 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKF 80 (110)
T ss_dssp CCHHHHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEEE
T ss_pred CcHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhcCCHHHHHHhcc
Q psy8488 123 VCDLQTLLGYSPEELHAMVD 142 (150)
Q Consensus 123 ~~ep~~~~~mt~eel~~~i~ 142 (150)
+++|..++|++++||+.++.
T Consensus 81 ~~~~~~l~g~~~~~~~~~~~ 100 (110)
T 1awc_A 81 VCDLKTLIGYSAAELNRLVI 100 (110)
T ss_dssp CSCHHHHTSSCHHHHHHHHH
T ss_pred CCCHHHHhCCCHHHHHHHHH
Confidence 99999999999999998864
No 5
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=100.00 E-value=2.9e-43 Score=254.62 Aligned_cols=89 Identities=56% Similarity=1.010 Sum_probs=86.9
Q ss_pred CceehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccceeEE
Q psy8488 41 GPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVY 120 (150)
Q Consensus 41 g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~rl~Y 120 (150)
|+++||+||++||.|+++++||+|||+++||+++||++||+|||.+||+++||||||||||||||++|||+||+|++++|
T Consensus 3 ~~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY 82 (93)
T 1bc8_C 3 SAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVY 82 (93)
T ss_dssp CCCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEE
T ss_pred CcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEE
Confidence 68899999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred Eeccchhhh
Q psy8488 121 RFVCDLQTL 129 (150)
Q Consensus 121 ~F~~ep~~~ 129 (150)
+|+++|.++
T Consensus 83 ~F~~~p~~~ 91 (93)
T 1bc8_C 83 KFVSYPEIL 91 (93)
T ss_dssp EETTTTGGG
T ss_pred EeCCChHHh
Confidence 999999875
No 6
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=5.9e-43 Score=262.18 Aligned_cols=107 Identities=36% Similarity=0.716 Sum_probs=100.9
Q ss_pred CCCCceehHHHHHHhhCCCCCCCceEEecC-CceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccc
Q psy8488 38 TGSGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGK 116 (150)
Q Consensus 38 ~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~ 116 (150)
.-+|.++||+||++||.|+++.+||+||++ +++|+++||++||+|||.+|||++||||||||||||||++|||.||+|+
T Consensus 4 ~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~ 83 (118)
T 2dao_A 4 GSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQ 83 (118)
T ss_dssp CCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSS
T ss_pred ccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCC
Confidence 446889999999999999999999999997 6799999999999999999999999999999999999999999999999
Q ss_pred eeEEEeccchhhhhcCCHHHHHHhcccC
Q psy8488 117 RYVYRFVCDLQTLLGYSPEELHAMVDLK 144 (150)
Q Consensus 117 rl~Y~F~~ep~~~~~mt~eel~~~i~~~ 144 (150)
+++|+|+++|..++++...+|.++..+.
T Consensus 84 r~vY~F~~~p~~~~~~~~~~~~~~~~~~ 111 (118)
T 2dao_A 84 RLLFRFMKTPDEIMSGRTDRLEHLESQE 111 (118)
T ss_dssp SSEEEECSCSGGGCCCSSSCGGGGGSST
T ss_pred eEEEEecCCHHHHhccchHHhhhhhccc
Confidence 9999999999999999888898876544
No 7
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=100.00 E-value=1.2e-43 Score=268.84 Aligned_cols=106 Identities=36% Similarity=0.713 Sum_probs=100.9
Q ss_pred CCCceehHHHHHHhhCCCCCCCceEEecC-CceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccce
Q psy8488 39 GSGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKR 117 (150)
Q Consensus 39 ~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~r 117 (150)
|+|.++||+||++||.|+++.+||+|||+ +++|+++||++||+|||.+|||++||||||||||||||++|||.||+|+|
T Consensus 1 ~s~~~~LWqFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY~k~Ii~Kv~Gqr 80 (128)
T 2lf8_A 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQR 80 (128)
Confidence 57889999999999999999999999997 67999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccchhhhhcCCHHHHHHhcccC
Q psy8488 118 YVYRFVCDLQTLLGYSPEELHAMVDLK 144 (150)
Q Consensus 118 l~Y~F~~ep~~~~~mt~eel~~~i~~~ 144 (150)
++|+|+++|..++++..++|.+...+-
T Consensus 81 lvY~F~~~p~~l~~~~~~~~~~~~~~~ 107 (128)
T 2lf8_A 81 LLFRFMKTPDEIMSGRTDRLEHLESQV 107 (128)
Confidence 999999999999999999998776544
No 8
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=5.6e-42 Score=249.92 Aligned_cols=87 Identities=68% Similarity=1.196 Sum_probs=84.4
Q ss_pred CCCCceehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccce
Q psy8488 38 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKR 117 (150)
Q Consensus 38 ~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~r 117 (150)
.|+|+++||+||++||+|+++.+||+||++++||+++||++||+|||.+|||++||||||||||||||++|||.||+|++
T Consensus 1 ~gsg~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY~k~i~~Kv~gkr 80 (98)
T 1fli_A 1 PGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR 80 (98)
T ss_dssp CCCSSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHTTSCCCBGGGS
T ss_pred CCCCceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHcCcEeecCCCe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecc
Q psy8488 118 YVYRFVC 124 (150)
Q Consensus 118 l~Y~F~~ 124 (150)
++|+|..
T Consensus 81 ~vY~F~~ 87 (98)
T 1fli_A 81 YAYKFDF 87 (98)
T ss_dssp SBCCCCT
T ss_pred EEEEecC
Confidence 9999974
No 9
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=100.00 E-value=3.7e-41 Score=247.19 Aligned_cols=87 Identities=70% Similarity=1.205 Sum_probs=84.5
Q ss_pred CCCCceehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccce
Q psy8488 38 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKR 117 (150)
Q Consensus 38 ~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~r 117 (150)
+|+|+++||+||++||+|+++.+||+|+++++||+++||++||+|||++|||++||||||||||||||++|||+||+|+|
T Consensus 3 ~g~g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr 82 (102)
T 2ypr_A 3 KGSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKR 82 (102)
T ss_dssp CCCSSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCS
T ss_pred CCCCcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCe
Confidence 67899999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred eEEEecc
Q psy8488 118 YVYRFVC 124 (150)
Q Consensus 118 l~Y~F~~ 124 (150)
++|+|..
T Consensus 83 ~vYkF~~ 89 (102)
T 2ypr_A 83 YAYRFDF 89 (102)
T ss_dssp SEEEECH
T ss_pred EEEEeCC
Confidence 9999953
No 10
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=5e-41 Score=261.47 Aligned_cols=97 Identities=53% Similarity=0.968 Sum_probs=88.4
Q ss_pred CCceehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccceeE
Q psy8488 40 SGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV 119 (150)
Q Consensus 40 ~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~rl~ 119 (150)
.|+++||+||++||.|+++++||+||++.++|+++||++||+|||.+|||++||||||||||||||++|||.||+|++++
T Consensus 3 ~~~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~Gqrlv 82 (157)
T 1hbx_G 3 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFV 82 (157)
T ss_dssp CCCCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTE
T ss_pred CCcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence 37889999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhcCCHHHH
Q psy8488 120 YRFVCDLQTLLGYSPEEL 137 (150)
Q Consensus 120 Y~F~~ep~~~~~mt~eel 137 (150)
|+|+++|. +++++++.+
T Consensus 83 YkF~~~p~-~l~~~p~~~ 99 (157)
T 1hbx_G 83 YKFVSYPE-ILNMDPMTV 99 (157)
T ss_dssp EEESSTTG-GGCC-----
T ss_pred EeeCCCHH-HhcCCcccc
Confidence 99999986 567877765
No 11
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=5.9e-41 Score=244.15 Aligned_cols=89 Identities=53% Similarity=0.911 Sum_probs=81.5
Q ss_pred cCCCCceehHHHHHHhhCCCC-CCCceEEecC-CceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecc
Q psy8488 37 FTGSGPIQLWQFLLELLTDKT-CQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTA 114 (150)
Q Consensus 37 ~~~~g~~~LW~FLl~LL~d~~-~~~~I~Wt~~-~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~ 114 (150)
..++|+++||+||++||.|++ +++||+||++ ++||+++||++||+|||.+||+++||||||||||||||++|||+||+
T Consensus 5 ~~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~~ii~Kv~ 84 (97)
T 1yo5_C 5 ALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPD 84 (97)
T ss_dssp ----CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTTTSEECCS
T ss_pred CCCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEeecc
Confidence 357789999999999999975 7999999997 79999999999999999999999999999999999999999999998
Q ss_pred -cceeEEEeccc
Q psy8488 115 -GKRYVYRFVCD 125 (150)
Q Consensus 115 -g~rl~Y~F~~e 125 (150)
|++++|+|++.
T Consensus 85 ~g~r~vY~F~~~ 96 (97)
T 1yo5_C 85 ISQRLVYQFVHP 96 (97)
T ss_dssp SCCTTEEEESCC
T ss_pred CCcEEEEecCCC
Confidence 89999999873
No 12
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=3e-40 Score=244.07 Aligned_cols=91 Identities=34% Similarity=0.714 Sum_probs=85.2
Q ss_pred cCCCCceehHHHHHHhhCCCC-CCCceEEecC-CceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecc
Q psy8488 37 FTGSGPIQLWQFLLELLTDKT-CQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTA 114 (150)
Q Consensus 37 ~~~~g~~~LW~FLl~LL~d~~-~~~~I~Wt~~-~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~ 114 (150)
++++|+++||+||++||.|++ +.+||+||++ .++|+++||++||+|||.+|||++||||||||||||||++|||.||.
T Consensus 3 sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv~ 82 (107)
T 1wwx_A 3 SGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD 82 (107)
T ss_dssp CCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECCS
T ss_pred CCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecc
Confidence 468899999999999999985 7899999997 79999999999999999999999999999999999999999999995
Q ss_pred cceeEEEeccchhh
Q psy8488 115 GKRYVYRFVCDLQT 128 (150)
Q Consensus 115 g~rl~Y~F~~ep~~ 128 (150)
+|++|+|++++..
T Consensus 83 -~rlvY~F~~~~~~ 95 (107)
T 1wwx_A 83 -RRLVYKFGKNAHG 95 (107)
T ss_dssp -SSSEEEECSSCCS
T ss_pred -ceEEEEeCCchhh
Confidence 9999999987643
No 13
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=2.9e-40 Score=242.82 Aligned_cols=93 Identities=34% Similarity=0.781 Sum_probs=86.8
Q ss_pred ceehHHHHHHhhCCCC-CCCceEEecC-CceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccceeE
Q psy8488 42 PIQLWQFLLELLTDKT-CQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV 119 (150)
Q Consensus 42 ~~~LW~FLl~LL~d~~-~~~~I~Wt~~-~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~rl~ 119 (150)
.++||+||++||+|++ +.+||+|||+ .++|+|+||++||+|||++|||++||||||||||||||++|||+||+|++++
T Consensus 4 ~~~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~v 83 (103)
T 3jtg_A 4 GTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLV 83 (103)
T ss_dssp CCSHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTE
T ss_pred cccHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEE
Confidence 3489999999999987 7899999997 7899999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhcCCHHHH
Q psy8488 120 YRFVCDLQTLLGYSPEEL 137 (150)
Q Consensus 120 Y~F~~ep~~~~~mt~eel 137 (150)
|+|++++. |+.+||+
T Consensus 84 Y~F~~~~~---g~~~~~~ 98 (103)
T 3jtg_A 84 YKFGKNSS---GWKEEEV 98 (103)
T ss_dssp EEBCTTCC---SCSTTTC
T ss_pred EEeCCCcc---CCCHHHh
Confidence 99998754 8877765
No 14
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=4.4e-39 Score=231.18 Aligned_cols=84 Identities=37% Similarity=0.711 Sum_probs=79.4
Q ss_pred ceehHHHHHHhhCCCCCCCceEEecC-CceEEec--CHHHHHHHhhccc-CCCCccHHHHHHHHHhhhhcceeEecccce
Q psy8488 42 PIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT--DPDEVARRWGIRK-NKPKMNYEKLSRGLRYYYDKNIIHKTAGKR 117 (150)
Q Consensus 42 ~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~--dp~~vA~lWG~~K-nk~~M~YdklsRsLR~yY~kgIl~Kv~g~r 117 (150)
+++|||||++||+|+++++||+|||+ .++|+++ ||++||++||.+| |+++||||||||||||||++|||.||+ ++
T Consensus 1 ~i~LwqFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r 79 (89)
T 1pue_E 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KK 79 (89)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-ST
T ss_pred CccHHHHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ce
Confidence 47999999999999999999999997 6999997 7999999999999 889999999999999999999999997 79
Q ss_pred eEEEeccch
Q psy8488 118 YVYRFVCDL 126 (150)
Q Consensus 118 l~Y~F~~ep 126 (150)
++|+|+++.
T Consensus 80 ~vY~F~~~~ 88 (89)
T 1pue_E 80 LTYQFSGEV 88 (89)
T ss_dssp TEEEECTTC
T ss_pred EEEeecccc
Confidence 999999764
No 15
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.50 E-value=0.0023 Score=47.51 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=49.6
Q ss_pred CceehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHH-HhhcccCCCCccHHHHHHHHHhhhhcce
Q psy8488 41 GPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVAR-RWGIRKNKPKMNYEKLSRGLRYYYDKNI 109 (150)
Q Consensus 41 g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~-lWG~~Knk~~M~YdklsRsLR~yY~kgI 109 (150)
+...+-.=|.++|+|++..++|+|...+..|.|.|++++++ +--.. -..-+|.++-|-|-.|-=+.+
T Consensus 16 ~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~y--Fkh~nfsSFvRQLN~YGF~Kv 83 (125)
T 2ldu_A 16 NVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKY--FKHNNMASFVRQLNMYGFRKV 83 (125)
T ss_dssp CCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHH--SSCCCHHHHHHHHHHTTCEEE
T ss_pred CCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHh--cCCCcHHHHHHHhcccCceEE
Confidence 33445555667889999999999999999999999998886 22221 123479999999987754433
No 16
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=96.48 E-value=0.002 Score=46.26 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=48.2
Q ss_pred ehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcce
Q psy8488 44 QLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNI 109 (150)
Q Consensus 44 ~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgI 109 (150)
.+-.=|.++|+|++..++|+|...+..|.|.|++++++-==. +.-..-+|.++-|-|-.|-=+.+
T Consensus 6 ~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp-~yFkh~n~~SFvRQLN~YGF~Kv 70 (106)
T 1hks_A 6 AFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLP-LNYKHNNMASFIRQLNMYGFHKI 70 (106)
T ss_dssp TTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTST-TTTSCCCHHHHHHHHHHHCCCCS
T ss_pred cHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhH-HhcCCCcHHHHHHhhhcCCCeEE
Confidence 344556678899999999999999999999999887762111 11234589999999988755444
No 17
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=95.93 E-value=0.01 Score=42.82 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=48.4
Q ss_pred CceehHHHHHHhhCCCCCCCceEEecCCceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhhh
Q psy8488 41 GPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYD 106 (150)
Q Consensus 41 g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~ 106 (150)
....+-.=|.++|+|++..++|+|...+.-|.|.|++++++.==. +--..-+|.++-|-|-.|-=
T Consensus 11 ~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp-~yFkh~nfsSFvRQLN~YGF 75 (102)
T 3hts_B 11 ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLP-KYFKHSNFASFVRQLNMYGW 75 (102)
T ss_dssp CSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHH-HHCSSCCHHHHHHHHHHTTE
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHH-HhcCCCcHHHHHHHhhcCCc
Confidence 344556667778899999999999999999999999988852111 11234578999999987743
No 18
>2irf_G IRF-2, interferon regulatory factor 2; transcription factor, IFN induction, IRF family, gene regulation/DNA complex; HET: DNA 5IU; 2.20A {Mus musculus} SCOP: a.4.5.23 PDB: 1irf_A 1irg_A 1if1_A*
Probab=70.49 E-value=8.3 Score=27.91 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=54.8
Q ss_pred CceehHHHHHHhhCCCCCCCceEEecC-CceEEec-----------C-HHHHHHHhhcccCC-----CCccHHHHHHHHH
Q psy8488 41 GPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT-----------D-PDEVARRWGIRKNK-----PKMNYEKLSRGLR 102 (150)
Q Consensus 41 g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~-----------d-p~~vA~lWG~~Knk-----~~M~YdklsRsLR 102 (150)
++.+|-.+|++.+++..+. -+.|+|+ ...|+|= + ...+=+.|..++++ ..-+..+-.+.+|
T Consensus 4 ~r~rlrpWL~~qi~sg~yp-GL~W~d~~kt~FrIPWkHa~r~~~~~e~D~~IFkaWA~~~Gk~~~g~d~~dp~~WK~nfR 82 (113)
T 2irf_G 4 ERMRMRPWLEEQINSNTIP-GLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGIDKPDPKTWKANFR 82 (113)
T ss_dssp -CCCHHHHHHHHHHTTCST-TCEEEETTTTEEEEECCCTTSTTCCHHHHSHHHHHHHHHTTSCCTTTSCCCHHHHHHHHH
T ss_pred cccchHHHHHHHhccCCCC-CceEEcCCCCEEEEeeeeCCcCCccccchhHHHHHHHHHhCCCCCCCCCCChhHHHHHHH
Confidence 5678999999999999996 6889997 6899982 2 24677889988876 2235556665555
Q ss_pred hhhhc--ceeE-------ecccceeEEEec
Q psy8488 103 YYYDK--NIIH-------KTAGKRYVYRFV 123 (150)
Q Consensus 103 ~yY~k--gIl~-------Kv~g~rl~Y~F~ 123 (150)
.=-.+ +|.+ ...+.-.||+|+
T Consensus 83 cALn~~~~~~ev~d~s~~~~~~p~kVYr~l 112 (113)
T 2irf_G 83 CAMNSLPDIEEVKDRSIKKGNNAFRVYRML 112 (113)
T ss_dssp HHHHHCTTEEECTTTCBCSSTTCEEEEEEC
T ss_pred HHhccCCCEEEecCcccCCCCCCeEEEEeC
Confidence 54442 3322 111235688886
No 19
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=68.26 E-value=20 Score=24.08 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=38.5
Q ss_pred CHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecc-cceeEEEeccch
Q psy8488 75 DPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTA-GKRYVYRFVCDL 126 (150)
Q Consensus 75 dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~-g~rl~Y~F~~ep 126 (150)
...++|+..|.. ..++.-+++|.|...-++|.+.+.. +++.+|-.+++.
T Consensus 26 t~~ela~~l~~~---~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~ 75 (123)
T 1okr_A 26 SANNIIEEIQMQ---KDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEE 75 (123)
T ss_dssp EHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCH
T ss_pred CHHHHHHHHhcc---CCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCH
Confidence 457788888764 4578899999999999999998765 677777777543
No 20
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.99 E-value=5.5 Score=29.14 Aligned_cols=85 Identities=19% Similarity=0.339 Sum_probs=55.9
Q ss_pred CceehHHHHHHhhCCCCCCCceEEecC-CceEEec-----------CH-HHHHHHhhcccCCC-----CccHHHHHHHHH
Q psy8488 41 GPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT-----------DP-DEVARRWGIRKNKP-----KMNYEKLSRGLR 102 (150)
Q Consensus 41 g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~-----------dp-~~vA~lWG~~Knk~-----~M~YdklsRsLR 102 (150)
+..+|-.+|++.++...+.+ +.|.|+ ...|+|- +. ..+=+.|..++++. .-+.-+-.+.||
T Consensus 5 ~~~~lr~WL~~qidsg~ypG-L~W~d~ekt~FrIPWkH~~r~~~~~~~D~~iFkaWA~~~Gk~~~g~d~~d~~~wK~nfR 83 (121)
T 2dll_A 5 SSGKLRQWLIDQIDSGKYPG-LVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLR 83 (121)
T ss_dssp SSCCHHHHHHHHHHHTCSSS-CEESSSSSCEEEEECCCCCCSSSCHHHHTHHHHHHHHHHSCCCBTTBCCCHHHHHHHHH
T ss_pred CccchHHHHHHHhccCCCCC-ceEecCCCCEEEeeCccCCcCCCCcchhhHHHHHHHHHcCCCcCCCCCCCHHHHHHHHH
Confidence 34579999999999999987 899997 6799983 11 46778899988752 334444444444
Q ss_pred hhhhc--ceeE-------ecccceeEEEeccch
Q psy8488 103 YYYDK--NIIH-------KTAGKRYVYRFVCDL 126 (150)
Q Consensus 103 ~yY~k--gIl~-------Kv~g~rl~Y~F~~ep 126 (150)
.=-.+ +|.+ ...+...||+|+.++
T Consensus 84 cALn~~~~f~ev~~~~~~~~~~p~kVYrl~~~~ 116 (121)
T 2dll_A 84 CALNKSNDFEELVERSQLDISDPYKVYRIVPES 116 (121)
T ss_dssp HHHHHCTTEEECTTTCBSSSSSCEEEEEECCSS
T ss_pred HHhccCCCeEEecCCCcCCCCCCeEEEEECCcc
Confidence 33332 3322 122345689998653
No 21
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=54.04 E-value=36 Score=30.76 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=55.2
Q ss_pred cCCCCceehHHHHHHhhCCCCCCCceEEecC-CceEEec-----------CHHHHHHHhhcccCCC-----CccHHHHHH
Q psy8488 37 FTGSGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT-----------DPDEVARRWGIRKNKP-----KMNYEKLSR 99 (150)
Q Consensus 37 ~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~-----------dp~~vA~lWG~~Knk~-----~M~YdklsR 99 (150)
..+.++.+|-.+|++.++...+. -+.|.|+ ...|+|= +...+=+.|..++++- .-++.+-.+
T Consensus 420 ~~~~~k~rlrpWL~~qi~sg~yp-Gl~W~d~~kt~FrIPWkH~~r~~~~~~d~~IFkaWA~~tGk~~~g~d~~dp~~WKt 498 (540)
T 2o61_A 420 SALSPKPRILPWLVSQLDLGQLE-GVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKR 498 (540)
T ss_dssp ---------CHHHHHHHHHCCST-TCEESCTTSSCEEEECCCTTCTTCCTGGGHHHHHHHHTTTSCCSSSSCCCHHHHHH
T ss_pred ccCCCccchHHHHHHHhccCCcC-cceEECCCCCEEEecCccCCcCCcchhhhHHHHHHHHHhCCCcCCCCCCCHHHHHH
Confidence 35667889999999999999996 6889997 5789982 1346789999988762 456677777
Q ss_pred HHHhhhh--cceeEec------ccceeEEEeccchhhh
Q psy8488 100 GLRYYYD--KNIIHKT------AGKRYVYRFVCDLQTL 129 (150)
Q Consensus 100 sLR~yY~--kgIl~Kv------~g~rl~Y~F~~ep~~~ 129 (150)
.||.=-. +++.... ....-+|+|+.+...|
T Consensus 499 nfRcALn~~~~f~~~~~~s~d~~~p~KVY~~~~~~~~~ 536 (540)
T 2o61_A 499 NFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNGLEHH 536 (540)
T ss_dssp HHHHHHTTCSSEEEEEEETSCSSSCEEEEEECC-----
T ss_pred HHHHhhccCCCeEeccCcCCCCCCCeeEEEeCChhhhc
Confidence 7776553 2222211 1245689999766544
No 22
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=53.54 E-value=37 Score=30.68 Aligned_cols=98 Identities=11% Similarity=0.232 Sum_probs=62.6
Q ss_pred CCcCCCCceehHHHHHHhhCCCCCCCceEEecC-CceEEec-----------CHHHHHHHhhcccCCCC-----------
Q psy8488 35 PCFTGSGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT-----------DPDEVARRWGIRKNKPK----------- 91 (150)
Q Consensus 35 ~~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~-----------dp~~vA~lWG~~Knk~~----------- 91 (150)
+...+..+..|-.+|++.+++..+. -+.|.|+ ...|+|= +...+=+.|..++++-.
T Consensus 286 ~~~~~~~r~~lrpWL~~qi~sg~yp-Gl~W~d~~k~~FrIPWkH~~r~~~~e~d~~iFk~WA~~~Gk~~~g~~~~~~~p~ 364 (540)
T 2o61_A 286 PSAGAAPRVLFGEWLLGEISSGCYE-GLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPE 364 (540)
T ss_dssp ----CCCCCCHHHHHHHHHHHTCST-TCEESSSSCCEEEEECCCTTCTTCCTGGGHHHHHHHHHTTSSCCCCC---CCCS
T ss_pred ccccCCCcccHHHHHHHHHhcCCcC-CceEECCCCCEEEecceeCCcCCcccchhHHHHHHHHHhCCCCCCccccCCCcc
Confidence 3445567789999999999999996 6889997 6799982 24577789999887621
Q ss_pred ---ccHHHHHHHHHhhhhc--ceeEecc------cceeEEEeccchhhhhcCC
Q psy8488 92 ---MNYEKLSRGLRYYYDK--NIIHKTA------GKRYVYRFVCDLQTLLGYS 133 (150)
Q Consensus 92 ---M~YdklsRsLR~yY~k--gIl~Kv~------g~rl~Y~F~~ep~~~~~mt 133 (150)
.+..+-.+.+|.=-.+ ++..-.. ....+|+|..++..-..|+
T Consensus 365 ~~~~d~~~WK~nfRcALn~~~~~~~l~d~s~d~~~p~kVY~~~~~~~~~~~~~ 417 (540)
T 2o61_A 365 AETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADQHKVYALSGSLSSDSSLS 417 (540)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCEEEEEEESCSTTSCEEEEEESSSSCCCC---
T ss_pred ccccchHHHHHHHHHHhccCCCeEEcccccCCCCCCeeEEEecCCCCCccccc
Confidence 1344555555544432 3222111 3567999999887655553
No 23
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=46.62 E-value=54 Score=21.93 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=33.6
Q ss_pred CHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecc-cceeEEEecc
Q psy8488 75 DPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTA-GKRYVYRFVC 124 (150)
Q Consensus 75 dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~-g~rl~Y~F~~ 124 (150)
...+||+.-+.. ..+++-++++.|..--++|.+.+.. +++.+|.-..
T Consensus 26 t~~el~~~l~~~---~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~~~~~~~~ 73 (126)
T 1sd4_A 26 SANEIVVEIQKY---KEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNI 73 (126)
T ss_dssp EHHHHHHHHHTT---SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECS
T ss_pred CHHHHHHHHhhc---CCCChhhHHHHHHHHHHCCceEEEeCCCeEEEEEec
Confidence 346666665543 3467899999999999999998766 5555665443
No 24
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=45.96 E-value=13 Score=27.41 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=36.4
Q ss_pred CHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccceeEEE-eccc-hhhh--------hcCCHHHHHHhcccC
Q psy8488 75 DPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYR-FVCD-LQTL--------LGYSPEELHAMVDLK 144 (150)
Q Consensus 75 dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~rl~Y~-F~~e-p~~~--------~~mt~eel~~~i~~~ 144 (150)
...+||++-|.. .+.||||-+.|++.+.... .-|+ |..+ ...+ +||+-+++.++++..
T Consensus 13 ~i~e~A~~~gvs-----------~~TLR~ye~~Gll~p~r~~-~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~ 80 (154)
T 2zhg_A 13 TPGEVAKRSGVA-----------VSALHFYESKGLITSIRNS-GNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVL 80 (154)
T ss_dssp CHHHHHHHHTSC-----------HHHHHHHHHTTSSCCEECT-TSCEEBCTTHHHHHHHHHHHHHHTCCHHHHHHHHCC-
T ss_pred CHHHHHHHHCcC-----------HHHHHHHHHcCCCCcccCC-CCCEEeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 346677766653 2678999999998754322 2334 3332 2211 399999999999764
No 25
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=44.43 E-value=13 Score=27.07 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=45.3
Q ss_pred CCCceehHHHHHHhhCCCCCCCceEEecC-CceEEecC-----------HHHHHHHhhcccCC-----CCccHHHHHHHH
Q psy8488 39 GSGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTD-----------PDEVARRWGIRKNK-----PKMNYEKLSRGL 101 (150)
Q Consensus 39 ~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~d-----------p~~vA~lWG~~Knk-----~~M~YdklsRsL 101 (150)
+..+.+|-.+|++.++...+. -+.|+|+ ...|+|-= ...+=+.|+.++++ ..-+..+-.+.|
T Consensus 5 ~~~k~rlr~WL~~qidsg~yp-Gl~W~d~~kt~FrIPWkH~~r~~~~~~D~~IFkaWA~~~Gk~~~g~d~~dp~~WKtnf 83 (116)
T 3qu6_A 5 GTPKPRILPWLVSQLDLGQLE-GVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNF 83 (116)
T ss_dssp ----CCHHHHHHHHHHHTCST-TCEECSTTSCEEEEECCC--------CCCSHHHHHHHHTTSCCBTTBCCCHHHHHHHH
T ss_pred CCCCccHHHHHHHHhccCCcC-CcEEEcCCCCEEEecCcCCCcCCcchhHHHHHHHHHHhcCcccCCCCCCCHHHHHHHH
Confidence 345678999999999999996 6889997 67899831 13466889988876 233566666666
Q ss_pred Hhhh
Q psy8488 102 RYYY 105 (150)
Q Consensus 102 R~yY 105 (150)
|.=-
T Consensus 84 RcAL 87 (116)
T 3qu6_A 84 RSAM 87 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6533
No 26
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=42.20 E-value=9.5 Score=27.46 Aligned_cols=46 Identities=22% Similarity=0.426 Sum_probs=29.3
Q ss_pred HHHHhhhhcceeEecccceeEEEeccchh----------hhhcCCHHHHHHhcccC
Q psy8488 99 RGLRYYYDKNIIHKTAGKRYVYRFVCDLQ----------TLLGYSPEELHAMVDLK 144 (150)
Q Consensus 99 RsLR~yY~kgIl~Kv~g~rl~Y~F~~ep~----------~~~~mt~eel~~~i~~~ 144 (150)
+.||||=+.|++.++......|+.-.+-. --+||+-+|+..++...
T Consensus 15 ~tLR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~ 70 (135)
T 1q06_A 15 KAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNLF 70 (135)
T ss_dssp HHHHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCccCCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 67899999999976521122334332111 12489999999998754
No 27
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=39.85 E-value=41 Score=21.23 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=38.4
Q ss_pred CHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecc-cceeEEEeccchhh
Q psy8488 75 DPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTA-GKRYVYRFVCDLQT 128 (150)
Q Consensus 75 dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~-g~rl~Y~F~~ep~~ 128 (150)
...+|++.-+.. +.++.-++++.|...-++|++.+.. |+..+|.-......
T Consensus 25 t~~ei~~~l~~~---~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~~~~~~~ 76 (82)
T 1p6r_A 25 NTNEVIKELSKT---STWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDESD 76 (82)
T ss_dssp EHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESCSSST
T ss_pred CHHHHHHHHhhc---CCccHHHHHHHHHHHHHCCCeEEEecCCEEEEEeecCHHH
Confidence 456777776653 4578899999999999999998876 66777766654443
No 28
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=38.90 E-value=18 Score=24.82 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=28.7
Q ss_pred HHHHhhhhcceeEecc-cceeEEE-eccc-hh--------hhhcCCHHHHHHhccc
Q psy8488 99 RGLRYYYDKNIIHKTA-GKRYVYR-FVCD-LQ--------TLLGYSPEELHAMVDL 143 (150)
Q Consensus 99 RsLR~yY~kgIl~Kv~-g~rl~Y~-F~~e-p~--------~~~~mt~eel~~~i~~ 143 (150)
+.||+|=+.|++.++. .. ..|+ |..+ .. --+||+-+++..++..
T Consensus 16 ~tLR~ye~~Gll~p~~r~~-~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 16 RTLHHYDDIGLLVPSERSH-AGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp HHHHHHHHHTSSCCSEECS-SCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred HHHHHHHHCCCCCCCccCC-CCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 5689999999997664 22 2233 3321 11 1238999999999874
No 29
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=37.71 E-value=15 Score=26.95 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=36.8
Q ss_pred HHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccceeEEEeccchhh----------hhcCCHHHHHHhcccC
Q psy8488 76 PDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQT----------LLGYSPEELHAMVDLK 144 (150)
Q Consensus 76 p~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~rl~Y~F~~ep~~----------~~~mt~eel~~~i~~~ 144 (150)
..+||++-|.. .+.||||=+.|+|.++.....-|++-.+-.. -+||+-+++..++...
T Consensus 7 I~evA~~~Gvs-----------~~tLR~ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~ 74 (146)
T 3hh0_A 7 ISEFASVGDVT-----------VRALRYYDKINLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKHLGFSLGEIQNIILQR 74 (146)
T ss_dssp HHHHHHHHTCC-----------HHHHHHHHHTTSSCCSEECTTSCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTSS
T ss_pred HHHHHHHHCcC-----------HHHHHHHHHCCCCCCCeECCCCCEeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Confidence 45677766642 3678999999999876311233444332211 2489999999988653
No 30
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=35.25 E-value=18 Score=28.07 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=35.0
Q ss_pred HHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEeccc-ceeEEEeccc--hhh--------hhcCCHHHHHHhccc
Q psy8488 77 DEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAG-KRYVYRFVCD--LQT--------LLGYSPEELHAMVDL 143 (150)
Q Consensus 77 ~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g-~rl~Y~F~~e--p~~--------~~~mt~eel~~~i~~ 143 (150)
.+||++-|.. .++||+|=+.|++.+... ....||+-.+ ... -+||+-+|+.++++.
T Consensus 9 ~e~a~~~gvs-----------~~tlr~y~~~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~g~~l~~i~~~~~~ 75 (278)
T 1r8e_A 9 GEVSKLANVS-----------IKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDL 75 (278)
T ss_dssp HHHHHHHTCC-----------HHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHHHHHTTS
T ss_pred HHHHHHHCcC-----------HHHHHHHHHCCCCCCCccCCCCCccccCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 5666666543 367899999999976531 1223333322 111 248999999998864
No 31
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=34.74 E-value=13 Score=27.13 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=35.3
Q ss_pred HHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccceeEEEeccch--h--------hhhcCCHHHHHHhccc
Q psy8488 77 DEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDL--Q--------TLLGYSPEELHAMVDL 143 (150)
Q Consensus 77 ~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~rl~Y~F~~ep--~--------~~~~mt~eel~~~i~~ 143 (150)
.+||++-|.. .++||||=+.|+|.++.....-|++-.+- . --+||+-+++.++++.
T Consensus 6 ~e~A~~~gvs-----------~~tLR~Ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 6 KEASEKSGVS-----------ADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp HHHHHHHTSC-----------HHHHHHHHHHTSSCCCCBCTTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHCcC-----------HHHHHHHHHCCCCCCCcCCCCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4566665542 46789999999998743222334443321 1 1138999999988864
No 32
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.69 E-value=17 Score=26.60 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccceeEEEeccc--hhh--------hhcCCHHHHHHhccc
Q psy8488 76 PDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCD--LQT--------LLGYSPEELHAMVDL 143 (150)
Q Consensus 76 p~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~rl~Y~F~~e--p~~--------~~~mt~eel~~~i~~ 143 (150)
..+||++-|.. .+.||||=+.|++.++.....-|++-.+ ... -+|++-+++.+++..
T Consensus 19 I~evA~~~gvs-----------~~tLR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 19 IGQVAKMQHLT-----------ISQIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDW 85 (148)
T ss_dssp HHHHHHHTTCC-----------HHHHHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcC-----------HHHHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 36666666552 3678999999999644321233444332 211 148999999998874
No 33
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=31.07 E-value=28 Score=23.75 Aligned_cols=44 Identities=25% Similarity=0.474 Sum_probs=28.2
Q ss_pred HHHHhhhhcceeEecc-cceeEEE-eccc-hhh--------hhcCCHHHHHHhccc
Q psy8488 99 RGLRYYYDKNIIHKTA-GKRYVYR-FVCD-LQT--------LLGYSPEELHAMVDL 143 (150)
Q Consensus 99 RsLR~yY~kgIl~Kv~-g~rl~Y~-F~~e-p~~--------~~~mt~eel~~~i~~ 143 (150)
+.||+|-+.|++.++. .. ..|+ |..+ ... -+|++-+++..++..
T Consensus 17 ~tLR~ye~~Gll~p~~~~~-~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 17 RTLHHYDNIELLNPSALTD-AGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp HHHHHHHHTTSSCCSEECT-TCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCCeECC-CCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 5679999999997654 22 2233 4332 111 128999999999865
No 34
>3qu3_A IRF-7, interferon regulatory factor 7; helix-turn-helix, gene regulation, DNA binding protein; 1.30A {Mus musculus} SCOP: a.4.5.0
Probab=30.40 E-value=29 Score=25.93 Aligned_cols=87 Identities=11% Similarity=0.274 Sum_probs=57.7
Q ss_pred CCceehHHHHHHhhCCCCCCCceEEecC-CceEEec-----------CHHHHHHHhhcccCCC--C-----c--------
Q psy8488 40 SGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT-----------DPDEVARRWGIRKNKP--K-----M-------- 92 (150)
Q Consensus 40 ~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~-----------dp~~vA~lWG~~Knk~--~-----M-------- 92 (150)
..+.+|-.+|++.++...+. -+.|+|+ ...|+|- +...+=+.|+.++++- . -
T Consensus 10 ~~r~rlrpWL~~qidSg~yp-GL~W~d~~kt~FrIPWkHa~r~d~~~~D~~IFkaWA~~tGk~~~g~~~~~~~~~~~~~~ 88 (137)
T 3qu3_A 10 VQRVLFGDWLLGEVSSGQYE-GLQWLNEARTVFRVPWKHFGRRDLDEEDAQIFKAWAVARGRWPPSGVNLPPPEAEAAER 88 (137)
T ss_dssp --CCCHHHHHHHHHHHTCST-TCEESSTTCCEEEEECCCCTTSCCCGGGGHHHHHHHHHTTSSCTTCCCSCHHHHHHHHH
T ss_pred CCcccHHHHHHHHhccCCcC-CceEecCCCCEEEeeCccCCcCCCchHHHHHHHHHHHHhCCcCCCcccCCCcccccccc
Confidence 35678999999999999997 5789997 6799984 2357779999998763 2 1
Q ss_pred -cHHHHHHHHHhhhhc--ceeE------ecccceeEEEeccchh
Q psy8488 93 -NYEKLSRGLRYYYDK--NIIH------KTAGKRYVYRFVCDLQ 127 (150)
Q Consensus 93 -~YdklsRsLR~yY~k--gIl~------Kv~g~rl~Y~F~~ep~ 127 (150)
+..+-.+.||-=-.+ .|-. ......-||+|..++.
T Consensus 89 ~dp~~WKtnfRcALnk~~~f~ev~d~s~d~~~p~KVYr~~~~~~ 132 (137)
T 3qu3_A 89 RERRGWKTNFRCALHSTGRFILRQDNSGDPVDPHKVYELSRELG 132 (137)
T ss_dssp TTHHHHHHHHHHHHHTCTTEEEEEEETTCTTSCEEEEEECTTCC
T ss_pred CCHHHHHHHHHHHHhcCCCeEEeccCCCCCCCCeEEEEeCCCcC
Confidence 445555566543321 1111 2223466899987654
No 35
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.90 E-value=46 Score=20.94 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=31.7
Q ss_pred HHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecccc--eeEEE
Q psy8488 76 PDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGK--RYVYR 121 (150)
Q Consensus 76 p~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~g~--rl~Y~ 121 (150)
.+++++.= .+..+.++..++.|.|...-+.|++.++.+. ...|.
T Consensus 36 ~~el~~~l--~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 36 AEDLYKRL--IDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFE 81 (83)
T ss_dssp HHHHHHHH--HHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred HHHHHHHH--HHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEee
Confidence 34455433 2345688999999999999999999998753 34444
No 36
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=28.62 E-value=52 Score=22.60 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=39.2
Q ss_pred CCccHHHHHHHHHhhhhcceeEecccceeEEEeccchhhhhcC-CHHHHHHhcccCC
Q psy8488 90 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGY-SPEELHAMVDLKP 145 (150)
Q Consensus 90 ~~M~YdklsRsLR~yY~kgIl~Kv~g~rl~Y~F~~ep~~~~~m-t~eel~~~i~~~~ 145 (150)
+.++|+.|...+|.-++-. .++.++-++..|.-..+-+ |.+||+.-+.+..
T Consensus 24 ~~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 24 PSISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp TTCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECCSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCC-----CCCeEEEEEECCCCCcccccCHHHHHHHHHHHH
Confidence 4789999999999987721 3566888899887776654 8889998877543
No 37
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=28.25 E-value=32 Score=27.12 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=28.2
Q ss_pred HHHHhhhhcceeEecccceeEEEeccch-----------hhhhcCCHHHHHHhcccCCC
Q psy8488 99 RGLRYYYDKNIIHKTAGKRYVYRFVCDL-----------QTLLGYSPEELHAMVDLKPD 146 (150)
Q Consensus 99 RsLR~yY~kgIl~Kv~g~rl~Y~F~~ep-----------~~~~~mt~eel~~~i~~~~~ 146 (150)
+.||||-+.|+|.++......|+...+- ....|||-+++.+++.....
T Consensus 15 ~TLRyYE~~GLl~p~~R~~~gyR~Y~~~dl~~L~~I~~lr~~~G~sL~eIk~~l~~~~~ 73 (222)
T 2dg6_A 15 ATIKYYLREGLLPPGRQVNATTAEYDEDHLRRLRLVRALIQVGKVPVATAREVLGHVDD 73 (222)
T ss_dssp HHHHHHHHHTSSCCC---------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCCCCeeCCCCceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhc
Confidence 5679999999998754223445544321 22238999999999886543
No 38
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=26.39 E-value=1.6e+02 Score=20.27 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=32.5
Q ss_pred CHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecc-cceeEEEe
Q psy8488 75 DPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTA-GKRYVYRF 122 (150)
Q Consensus 75 dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~-g~rl~Y~F 122 (150)
...+|++.-+.. ..+++-+++|.|...-++|.+.+.. +++.+|.-
T Consensus 26 t~~el~~~l~~~---~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~ 71 (138)
T 2g9w_A 26 TVRQVHEALSAR---RDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAP 71 (138)
T ss_dssp EHHHHHHHHTTT---CCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEE
T ss_pred CHHHHHHHHhcc---CCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEe
Confidence 346677665543 4678999999999999999999876 45556653
No 39
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=21.73 E-value=1.2e+02 Score=19.09 Aligned_cols=59 Identities=10% Similarity=0.153 Sum_probs=39.6
Q ss_pred CHHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecc--cceeEEEecc-chhhhhcCCHHHHHHh
Q psy8488 75 DPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTA--GKRYVYRFVC-DLQTLLGYSPEELHAM 140 (150)
Q Consensus 75 dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~--g~rl~Y~F~~-ep~~~~~mt~eel~~~ 140 (150)
...++|+.-| ++-..++|.|+..-++|++.+.. +++..|.+.. ....++....+.+..+
T Consensus 36 s~~ela~~l~-------is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~~~~~~~~ 97 (109)
T 1sfx_A 36 RVSEIARELD-------LSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSSILGE 97 (109)
T ss_dssp CHHHHHHHHT-------CCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHC-------CCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHHHHHHHHH
Confidence 4567777664 57789999999999999998765 3556666555 4455554444434433
No 40
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=21.03 E-value=97 Score=21.06 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=31.3
Q ss_pred HHHHHHHhhcccCCCCccHHHHHHHHHhhhhcceeEecc-cceeEEE
Q psy8488 76 PDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTA-GKRYVYR 121 (150)
Q Consensus 76 p~~vA~lWG~~Knk~~M~YdklsRsLR~yY~kgIl~Kv~-g~rl~Y~ 121 (150)
..+|++.-+.. +.++.-++.|.|...-++|.+.+.. |+..+|.
T Consensus 52 ~~eL~~~l~~~---~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y~ 95 (99)
T 2k4b_A 52 VDEIYAQIPQE---LEWSLATVKTLLGRLVKKEMLSTEKEGRKFVYR 95 (99)
T ss_dssp HHHHHHTCCGG---GCCCHHHHHHHHHHHHHTTSCEEEEETTEEEEE
T ss_pred HHHHHHHHhcc---cCCCHhhHHHHHHHHHHCCCEEEEeCCCEEEEE
Confidence 35555544432 3577899999999999999998876 5655554
No 41
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.39 E-value=89 Score=22.18 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=32.3
Q ss_pred cCCCCccHHHHHHHHHhhhhcceeEeccc--ceeEEEeccchhhhh
Q psy8488 87 KNKPKMNYEKLSRGLRYYYDKNIIHKTAG--KRYVYRFVCDLQTLL 130 (150)
Q Consensus 87 Knk~~M~YdklsRsLR~yY~kgIl~Kv~g--~rl~Y~F~~ep~~~~ 130 (150)
+..+.++.-++-|.|...-+.|++.++.. ....|....++-.|+
T Consensus 49 ~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~~~~H~Hl 94 (145)
T 2fe3_A 49 GKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFVTSDHYHA 94 (145)
T ss_dssp GGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEECCCCEEEE
T ss_pred HhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEECCCCCcceE
Confidence 34578999999999999999999999873 345566544333333
No 42
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=20.32 E-value=28 Score=22.42 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=27.7
Q ss_pred HHHHHhhhhc-ceeEecccceeEEE-ecc-ch------hh---hhcCCHHHHHHhcccCC
Q psy8488 98 SRGLRYYYDK-NIIHKTAGKRYVYR-FVC-DL------QT---LLGYSPEELHAMVDLKP 145 (150)
Q Consensus 98 sRsLR~yY~k-gIl~Kv~g~rl~Y~-F~~-ep------~~---~~~mt~eel~~~i~~~~ 145 (150)
.+.||+|-++ |++.+......-|+ |.. |. .. -.||+-+++.+++...|
T Consensus 19 ~~tlR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 19 EATLRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 3567988886 87765433201122 322 22 11 34888899988887554
No 43
>1knv_A BSE634I restriction endonuclease; APO-enzyme, hydrolase; 2.17A {Geobacillus stearothermophilus} SCOP: c.52.1.7 PDB: 3v1z_A* 3v20_A* 3v21_A*
Probab=20.24 E-value=1.3e+02 Score=25.13 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=38.3
Q ss_pred CCCCceEEecC--CceEEecCHHHHHHHhhcccCCCCccHHHHHHHHHhhh
Q psy8488 57 TCQAFISWTGD--GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYY 105 (150)
Q Consensus 57 ~~~~~I~Wt~~--~~eFri~dp~~vA~lWG~~Knk~~M~YdklsRsLR~yY 105 (150)
++++||.|--+ ...|||...+.++.+.|..- |.+++...--.+|.|-
T Consensus 6 ~~~~c~~~~~~n~~tk~ri~~~n~~~~~~~~~i--P~~~isd~l~~~~n~~ 54 (293)
T 1knv_A 6 TNSNCVEEYKENGKTKIRIKPFNALIELYHHQT--PTGSIKENLDKLENYV 54 (293)
T ss_dssp GGCSSEEEECCSSSCEEEECHHHHHHHHCSSSC--CCSBHHHHHHHHHHHH
T ss_pred ccchHHHHHHhcCCCcEEEchHHHHHHHHhccC--CCccHHHHHHHHHHHH
Confidence 56889999775 56999988899999999877 4458888888888873
No 44
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=20.19 E-value=53 Score=26.01 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=31.3
Q ss_pred HHHHHhhhhcceeEecccceeEEEeccchhh----------hhcCCHHHHHHhccc
Q psy8488 98 SRGLRYYYDKNIIHKTAGKRYVYRFVCDLQT----------LLGYSPEELHAMVDL 143 (150)
Q Consensus 98 sRsLR~yY~kgIl~Kv~g~rl~Y~F~~ep~~----------~~~mt~eel~~~i~~ 143 (150)
.|.||||=+.|+|.++.....-||.-.+-.. -+||+-+++..+++.
T Consensus 17 ~~TLRyYe~~GLL~p~~~~~~GyR~Y~~~dl~~L~~I~~lr~~G~sL~eIk~~l~~ 72 (249)
T 3qao_A 17 VRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDD 72 (249)
T ss_dssp HHHHHHHHHTTSSCCEECTTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCceECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHhcc
Confidence 3678999999999877622344554432211 248999999999874
Done!