RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8488
(150 letters)
>gnl|CDD|143944 pfam00178, Ets, Ets-domain.
Length = 85
Score = 160 bits (407), Expect = 2e-52
Identities = 61/85 (71%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Query: 42 PIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 100
IQLWQFLLELLTD+ + FI WTG D EFKL DP+EVAR WGIRKNKP MNY+KLSR
Sbjct: 1 QIQLWQFLLELLTDQDNRDFIRWTGRDKGEFKLVDPEEVARLWGIRKNKPNMNYDKLSRA 60
Query: 101 LRYYYDKNIIHKTAGKRYVYRFVCD 125
LRYYY K II K GKR VY+FV D
Sbjct: 61 LRYYYKKGIIRKVKGKRLVYKFVSD 85
>gnl|CDD|197710 smart00413, ETS, erythroblast transformation specific domain.
variation of the helix-turn-helix motif.
Length = 87
Score = 152 bits (386), Expect = 3e-49
Identities = 56/86 (65%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 42 PIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 100
IQLWQFLL+LL D I WT D EFKL DP+EVAR WG RKNKP MNYEKLSR
Sbjct: 1 GIQLWQFLLDLLLDPENSDIIKWTDRDEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRA 60
Query: 101 LRYYYDKNIIHKTAGKRYVYRFVCDL 126
LRYYY KNI+ K GKR VY+FV +
Sbjct: 61 LRYYYKKNILEKVPGKRLVYKFVKNP 86
>gnl|CDD|236714 PRK10557, PRK10557, hypothetical protein; Provisional.
Length = 192
Score = 32.3 bits (74), Expect = 0.050
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 8/31 (25%)
Query: 50 LELLTDKT-CQAFISWTGDGWEFKLTDPDEV 79
LE L T CQ G GWE KLTDPDE+
Sbjct: 123 LETLRGATSCQ------GKGWE-KLTDPDEI 146
>gnl|CDD|149395 pfam08321, PPP5, PPP5 TPR repeat region. This region is specific
to the PPP5 subfamily of serine/threonine phosphatases
and contains TPR repeats.
Length = 95
Score = 29.2 bits (66), Expect = 0.27
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 84 GIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDL 143
G R K+ E + + + D+ +HK + Y+ + ++ LL P ++V++
Sbjct: 44 GPRLEDGKVTLEFVKDMMERFKDQKKLHK----KCAYQILLQVKELLKKLP----SLVEI 95
>gnl|CDD|214682 smart00475, 53EXOc, 5'-3' exonuclease.
Length = 259
Score = 29.1 bits (66), Expect = 0.83
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 49 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGI 85
LL+L++DK G EF+L P+ V ++G+
Sbjct: 135 LLQLVSDKV-SVLDPTKGIK-EFELYTPENVIEKYGL 169
>gnl|CDD|133408 cd04781, HTH_MerR-like_sg6, Helix-Turn-Helix DNA binding domain of
putative transcription regulators from the MerR
superfamily. Putative helix-turn-helix (HTH) MerR-like
transcription regulators (subgroup 6) with at least two
conserved cysteines present in the C-terminal portion of
the protein. Based on sequence similarity, these
proteins are predicted to function as transcription
regulators that mediate responses to stress in
eubacteria. They belong to the MerR superfamily of
transcription regulators that promote transcription of
various stress regulons by reconfiguring the operator
sequence located between the -35 and -10 promoter
elements. A typical MerR regulator is comprised of two
distinct domains that harbor the regulatory
(effector-binding) site and the active (DNA-binding)
site. Their N-terminal domains are homologous and
contain a DNA-binding winged HTH motif, while the
C-terminal domains are often dissimilar and bind
specific coactivator molecules such as metal ions,
drugs, and organic substrates.
Length = 120
Score = 27.6 bits (62), Expect = 1.6
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 28/76 (36%)
Query: 78 EVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTA--GKRYVYRFVCDLQTL------ 129
EVAR+ G+ + LRYY +K +I G R Y D Q L
Sbjct: 5 EVARQSGLP-----------ASTLRYYEEKGLIASIGRRGLRRQY----DPQVLDRLALI 49
Query: 130 -----LGYSPEELHAM 140
G+S +E+ AM
Sbjct: 50 ALGRAAGFSLDEIQAM 65
>gnl|CDD|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins. This
region of unknown function is found in RelA and SpoT of
Escherichia coli, and their homologues in plants and in
other eubacteria. RelA is a guanosine
3',5'-bis-pyrophosphate (ppGpp) synthetase (EC:2.7.6.5)
while SpoT is thought to be a bifunctional enzyme
catalyzing both ppGpp synthesis and degradation (ppGpp
3'-pyrophosphohydrolase, (EC:3.1.7.2)). This region is
often found in association with HD (pfam01966), a
metal-dependent phosphohydrolase, TGS (pfam02824) which
is a possible nucleotide-binding region, and the ACT
regulatory domain (pfam01842).
Length = 116
Score = 27.2 bits (61), Expect = 1.9
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 94 YEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKDD 150
YEK+ R I+ G R + +FV D +LG +H + D P + D
Sbjct: 10 YEKMRRKGSPEELFEEIYDLIGIRIIVQFVDDCYRVLGI----IHTLWDPIPGRFKD 62
>gnl|CDD|200549 cd10923, CE4_COG5298, Putative NodB-like catalytic domain of
uncharacterized proteins found in bacteria. This family
corresponds to a group of uncharacterized bacterial
proteins with high sequence similarity to the catalytic
domain of the six-stranded barrel rhizobial NodB-like
proteins, which remove N-linked or O-linked acetyl
groups from cell wall polysaccharides and belong to the
larger carbohydrate esterase 4 (CE4) superfamily. Some
family members contain an additional copper amine
oxidase N-terminal domain.
Length = 250
Score = 27.7 bits (62), Expect = 2.3
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 65 TGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNI 109
+GDG+EF D + +++ +GL+ + +
Sbjct: 88 SGDGFEFWDAKNDAPLAE-----DSQAWAEQRVEKGLQILKELGL 127
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 27.5 bits (61), Expect = 2.4
Identities = 9/34 (26%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 82 RWG-IRKNKPKMNY--EKLSRGLRYYYDKNIIHK 112
+WG ++ N+ + + +++ GL+Y +D I+H+
Sbjct: 99 KWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHR 132
>gnl|CDD|168293 PRK05910, PRK05910, type III secretion system protein; Validated.
Length = 584
Score = 27.8 bits (62), Expect = 2.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 107 KNIIHKTAGKRYVYRFVCDLQTLLGYSPEEL 137
+N+ + +R+V R V + Q + G S EE+
Sbjct: 389 RNLAPEAISERFVKRLVEEFQEVAGISIEEI 419
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 27.1 bits (61), Expect = 3.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 85 IRKNKPKMNYEKL-------SRGLRYYYDKNIIHK 112
+RKN+PK++ L +RG+ Y KN IH+
Sbjct: 92 LRKNRPKLSLSDLLSFALQIARGMEYLESKNFIHR 126
>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1068
Score = 27.6 bits (62), Expect = 3.4
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 13/45 (28%)
Query: 6 TSYYYSSF---SDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQ 47
T YYYS++ S+++P + ++ GSGPI++ Q
Sbjct: 536 TPYYYSTYFGESEAEPSSEKKKVLI----------LGSGPIRIGQ 570
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 26.9 bits (60), Expect = 3.9
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 23/98 (23%)
Query: 70 EFKLTDPDEVARRWG----IRKNKPKMNYEKLSRGLRYYYDKNIIH-------------- 111
E L D EVA G I PK +E L L D IIH
Sbjct: 241 EPILGDAREVAPELGVADRIIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERP 300
Query: 112 ----KTAGKRYVYRF-VCDLQTLLGYSPEELHAMVDLK 144
K+A ++ Y+ V ++ + YSP H +VDL+
Sbjct: 301 EKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVVDLR 338
>gnl|CDD|219007 pfam06395, CDC24, CDC24 Calponin. Is a calponin homology domain.
Length = 89
Score = 26.1 bits (58), Expect = 4.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 116 KRYVYRFVCDLQTLLGYSPEELHAMVDL 143
K+ VY F+ ++ LG+ E+L + DL
Sbjct: 43 KKSVYDFLLACKSELGFPDEDLFTISDL 70
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 26.1 bits (58), Expect = 8.5
Identities = 9/41 (21%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 103 YYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDL 143
++ D+ +HK +Y Y+ + ++ LL ++L ++V++
Sbjct: 22 WFKDQKKLHK----KYAYQILLQVKELL----KKLPSLVEI 54
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 26.2 bits (57), Expect = 9.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 91 KMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGY 132
K+NY KL L D ++++ TA ++ Y +V L ++ +
Sbjct: 479 KVNYAKLYEYLLVNKDLSVMYGTATNKFFYMYVQQLNYVIRF 520
>gnl|CDD|217600 pfam03529, TF_Otx, Otx1 transcription factor.
Length = 86
Score = 24.8 bits (54), Expect = 9.2
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 19 PYVQPASMLAGYSGSGPCFTG 39
Y Q GY GS F G
Sbjct: 29 TYTQAPGYSQGYPGSSSYFGG 49
>gnl|CDD|215913 pfam00425, Chorismate_bind, chorismate binding enzyme. This family
includes the catalytic regions of the chorismate binding
enzymes anthranilate synthase, isochorismate synthase,
aminodeoxychorismate synthase and para-aminobenzoate
synthase.
Length = 254
Score = 25.9 bits (58), Expect = 9.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 120 YRFVCDLQTLLGYSPE 135
Y F+ +L LG SPE
Sbjct: 55 YAFLLELGDFLGASPE 70
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.441
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,903,540
Number of extensions: 706041
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 25
Length of query: 150
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 62
Effective length of database: 7,034,450
Effective search space: 436135900
Effective search space used: 436135900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)