RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8488
(150 letters)
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain;
1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A
1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Length = 146
Score = 160 bits (405), Expect = 1e-51
Identities = 104/139 (74%), Positives = 117/139 (84%), Gaps = 5/139 (3%)
Query: 16 SKPPYVQPASMLAGYS-----GSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWE 70
+ YV+ + L + +TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWE
Sbjct: 8 TFKDYVRDRADLNKDKPVIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWE 67
Query: 71 FKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLL 130
FKL+DPDEVARRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LL
Sbjct: 68 FKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 127
Query: 131 GYSPEELHAMVDLKPDKKD 149
GY+PEELHAM+D+KPD +
Sbjct: 128 GYTPEELHAMLDVKPDADE 146
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA
complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Length = 171
Score = 160 bits (404), Expect = 3e-51
Identities = 107/155 (69%), Positives = 122/155 (78%), Gaps = 10/155 (6%)
Query: 5 DTSYYYSSFSDSKP-----PYVQPASMLAGYSGSGP-----CFTGSGPIQLWQFLLELLT 54
D+ Y ++ + KP YV+ + L P +TGSGPIQLWQFLLELLT
Sbjct: 17 DSEDYPAALPNHKPKGTFKDYVRDRADLNKDKPVIPAAALAGYTGSGPIQLWQFLLELLT 76
Query: 55 DKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTA 114
DK+ Q+FISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTA
Sbjct: 77 DKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTA 136
Query: 115 GKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKD 149
GKRYVYRFV DLQ+LLGY+PEELHAM+D+KPD +
Sbjct: 137 GKRYVYRFVSDLQSLLGYTPEELHAMLDVKPDADE 171
>1awc_A Protein (GA binding protein alpha); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: a.4.5.21
Length = 110
Score = 149 bits (377), Expect = 6e-48
Identities = 69/106 (65%), Positives = 81/106 (76%)
Query: 43 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 102
IQLWQFLLELLTDK + ISW GD EFKL P+ VA++WG RKNKP MNYEKLSR LR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 103 YYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKK 148
YYYD ++I K GKR+VY+FVCDL+TL+GYS EL+ +V KK
Sbjct: 61 YYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVIECEQKK 106
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Length = 128
Score = 141 bits (357), Expect = 1e-44
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 39 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 97
GS LW ++ +LL+D + FI W + F++ DP+ +AR WG KN+ M YEK+
Sbjct: 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60
Query: 98 SRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKDD 150
SR LR+YY NII K G+R ++RF+ ++ + L + D++
Sbjct: 61 SRALRHYYKLNIIRKEPGQRLLFRFMKTPDEIMSGRTDRLEHLESQVLDEQTY 113
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 140 bits (353), Expect = 4e-44
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 39 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 97
SG LW ++ +LL+D + FI W + F++ DP+ +AR WG KN+ M YEK+
Sbjct: 5 SSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 64
Query: 98 SRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKDD 150
SR LR+YY NII K G+R ++RF+ ++ + L + +
Sbjct: 65 SRALRHYYKLNIIRKEPGQRLLFRFMKTPDEIMSGRTDRLEHLESQELSGPSS 117
>4avp_A ETS translocation variant 1; transcription, transcriptional
activation and repression, DN binding protein, E
twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens}
Length = 106
Score = 137 bits (345), Expect = 5e-43
Identities = 60/103 (58%), Positives = 76/103 (73%)
Query: 34 GPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMN 93
GP G +QLWQFL+ LL D + FI+WTG G EFKL +P+EVARRWGI+KN+P MN
Sbjct: 3 GPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMN 62
Query: 94 YEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEE 136
Y+KLSR LRYYY+K I+ K AG+RYVY+FVCD + L + +
Sbjct: 63 YDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFSD 105
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex;
3.15A {Homo sapiens} SCOP: a.4.5.21
Length = 157
Score = 137 bits (346), Expect = 2e-42
Identities = 51/110 (46%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 39 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 98
I LWQFLL+LL + I WT + +FKL +EVAR WGIRKNKP MNY+KLS
Sbjct: 2 SDSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLS 61
Query: 99 RGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKK 148
R LRYYY KNII K G+++VY+FV +L P + +
Sbjct: 62 RALRYYYVKNIIKKVNGQKFVYKFVSY-PEILNMDPMTVGRIEGDCESLN 110
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged
helix-turn-helix, DNA-binding specificity,
transcription/DNA complex; HET: DNA; 1.93A {Homo
sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Length = 93
Score = 132 bits (334), Expect = 2e-41
Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 41 GPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 100
I LWQFLL+LL + I WT + +FKL +EVAR WGIRKNKP MNY+KLSR
Sbjct: 3 SAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRA 62
Query: 101 LRYYYDKNIIHKTAGKRYVYRFVCDLQTL 129
LRYYY KNII K G+++VY+FV + L
Sbjct: 63 LRYYYVKNIIKKVNGQKFVYKFVSYPEIL 91
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Length = 98
Score = 132 bits (332), Expect = 3e-41
Identities = 59/85 (69%), Positives = 67/85 (78%)
Query: 39 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 98
GSG IQLWQFLLELL+D + I+W G EFK+TDPDEVARRWG RK+KP MNY+KLS
Sbjct: 2 GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61
Query: 99 RGLRYYYDKNIIHKTAGKRYVYRFV 123
R LRYYYDKNI+ K GKRY Y+F
Sbjct: 62 RALRYYYDKNIMTKVHGKRYAYKFD 86
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA
complex, double helix, transcription/DNA complex; 2.00A
{Homo sapiens} SCOP: a.4.5.21
Length = 97
Score = 126 bits (318), Expect = 5e-39
Identities = 47/92 (51%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 38 TGSGPIQLWQFLLELLTDK-TCQAFISWT-GDGWEFKLTDPDEVARRWGIRKNKPKMNYE 95
GS PI LWQFL ELL + FI W + FK+ D +VAR WGIRKN+P MNY+
Sbjct: 6 LGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYD 65
Query: 96 KLSRGLRYYYDKNIIHKT-AGKRYVYRFVCDL 126
KLSR +R YY K II K +R VY+FV +
Sbjct: 66 KLSRSIRQYYKKGIIRKPDISQRLVYQFVHPI 97
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex,
type II TGF-beta receptor, activa alternative splicing,
cytoplasm; HET: DNA; 2.20A {Mus musculus}
Length = 103
Score = 125 bits (315), Expect = 2e-38
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 43 IQLWQFLLELLTDK-TCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 100
LW+F+ ++L + + W FK + VA+ WG +K M YEKLSR
Sbjct: 5 THLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRA 64
Query: 101 LRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELH 138
+RYYY + I+ + G+R VY+F + G+ EE+
Sbjct: 65 MRYYYKREILERVDGRRLVYKFGKN---SSGWKEEEVG 99
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation
and repression, structural genomics; NMR {Homo sapiens}
SCOP: a.4.5.21
Length = 107
Score = 125 bits (315), Expect = 2e-38
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 39 GSGPIQLWQFLLELLTDK-TCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEK 96
SG LW+F+ +LL + W + F++ + +A+ WG RK +M YEK
Sbjct: 5 SSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEK 64
Query: 97 LSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHA 139
LSR LRYYY I+ + +R VY+F + G+ ++L
Sbjct: 65 LSRALRYYYKTGILERV-DRRLVYKFGKN---AHGWQEDKLSG 103
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex
(transcription regulating/DNA), oncogene, transforming
protein, DNA- binding, activator; HET: DNA; 2.10A {Mus
musculus} SCOP: a.4.5.21
Length = 89
Score = 114 bits (287), Expect = 2e-34
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 43 IQLWQFLLELLTDKTCQAFISWTGDG---WEFKLTDPDEVARRWGIRK-NKPKMNYEKLS 98
I+L+QFLL+LL + I W ++F + +A RWGI+K N+ KM YEK++
Sbjct: 2 IRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMA 61
Query: 99 RGLRYYYDKNIIHKTAGKRYVYRFVCDL 126
R LR Y + K K+ Y+F ++
Sbjct: 62 RALRNYGKTGEVKKV-KKKLTYQFSGEV 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.007
Identities = 27/167 (16%), Positives = 45/167 (26%), Gaps = 56/167 (33%)
Query: 7 SYYYSSFSDSKPPYVQPASML--AGYSGSGPCFT---GSGPIQLW--------------- 46
+Y + +P + S L A G+ G G +
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 47 --------QFLLELLTDKT-CQAFISWTGD--GWEFKLTDPDEVARRWGIRKNKPKMNYE 95
+ L EL+ + + + W L +P N P +Y
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW---LENPS----------NTPDKDY- 230
Query: 96 KLSRGLRYY-YDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMV 141
L +I YV LLG++P EL + +
Sbjct: 231 -----LLSIPISCPLIGVIQLAHYVV--TA---KLLGFTPGELRSYL 267
Score = 25.8 bits (56), Expect = 7.0
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 6 TSYYYSSFSD--SKPPYVQPASMLAGYS 31
TSY + S S + QPA L +
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKA 1742
>3hts_B Heat shock transcription factor; transcription regulation,
DNA-binding protein, complex (WING helix_TURN_
helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22
PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A
1fbq_A
Length = 102
Score = 29.0 bits (65), Expect = 0.26
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 49 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVAR 81
L ++ DK+ + FI W+ G + + + +
Sbjct: 19 LWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQ 51
>2ldu_A Heat shock factor protein 1; structural genomics, northeast
structural genomics consortiu DNA-binding, PSI-biology,
protein structure initiative; NMR {Homo sapiens}
Length = 125
Score = 28.9 bits (65), Expect = 0.35
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 49 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVARR 82
L L++D A I W+ G F + D + A+
Sbjct: 24 LWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKE 57
>1hks_A Heat-shock transcription factor; transcription regulation; NMR
{Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Length = 106
Score = 28.4 bits (64), Expect = 0.44
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 49 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVAR 81
L L+ D I WT DG F + + + A+
Sbjct: 11 LWRLVDDADTNRLICWTKDGQSFVIQNQAQFAK 43
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 29.1 bits (66), Expect = 0.54
Identities = 7/54 (12%), Positives = 14/54 (25%), Gaps = 8/54 (14%)
Query: 90 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDL 143
+L+ Y + + R T +E H V++
Sbjct: 305 ENTMIAELNNDFDMYT----VEPLKDGTCIMRLCTSWAT----EEKECHRFVEV 350
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG, TRA; 2.09A {Nostoc SP}
Length = 118
Score = 27.9 bits (63), Expect = 0.59
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 129 LLGYSPEELHAM--VDLKPD 146
+ YS E+L +M D+ D
Sbjct: 45 MTEYSREQLLSMNLQDIDVD 64
>3iuk_A Uncharacterized protein; PF05960.1, DUF885, M32
carboxypeptidase-like fold, PSI, MCSG structural
genomics, protein structure initiative; 1.85A
{Arthrobacter aurescens}
Length = 562
Score = 28.4 bits (63), Expect = 1.1
Identities = 16/81 (19%), Positives = 21/81 (25%), Gaps = 2/81 (2%)
Query: 61 FISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTA-GKRYV 119
F D P EV + + + Y L LR K A G+
Sbjct: 185 FAKMAADASLGDAPLPAEVQDKLDAGTSAARSAYSALGAFLRDELLPVAPEKDAVGRER- 243
Query: 120 YRFVCDLQTLLGYSPEELHAM 140
Y EE +A
Sbjct: 244 YSLASRSFIGAEVDLEETYAW 264
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein
structure initiati northeast structural genomics
consortium; 2.60A {Desulfitobacterium hafniense}
Length = 126
Score = 27.2 bits (61), Expect = 1.6
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 129 LLGYSPEELHAM--VDLKPD 146
LGY+ EEL +M + +
Sbjct: 31 KLGYTHEELMSMHILTITSA 50
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein;
periplasmic
N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin
protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Length = 302
Score = 27.0 bits (60), Expect = 2.2
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 57 TCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 102
AF G+E+ + +PDE + N+ + N+ +
Sbjct: 206 VLAAFWRAALKGYEWMVENPDEALNV--LLTNQDEANFPLIQEVEE 249
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural
genomics, PSI-2 structure initiative; 1.60A {Pseudomonas
syringae PV} SCOP: d.369.1.1
Length = 135
Score = 26.6 bits (58), Expect = 2.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 36 CFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGW 69
C G + LW EL+T+++ ++ W D W
Sbjct: 99 CVEEDGTVLLWSAEEELVTEESWESVWHWARDVW 132
>2r78_A Sensor protein; sensory box sensor histidine kinase/response
regulator, structural genomics, PSI, MCSG; 1.60A
{Geobacter sulfurreducens pca}
Length = 117
Score = 26.4 bits (59), Expect = 2.4
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 129 LLGYSPEELHAM 140
+GY+ +E A+
Sbjct: 43 AIGYTRDEFLAL 54
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium
butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Length = 787
Score = 26.8 bits (59), Expect = 3.4
Identities = 14/137 (10%), Positives = 30/137 (21%), Gaps = 8/137 (5%)
Query: 17 KPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDP 76
P ++ ++ G P + P ++L TGD ++
Sbjct: 62 IPITIRDQELIVGSLTKEPRSSQVFPEFSNKWL-----QDELDRLNKRTGDAFQISEESK 116
Query: 77 D---EVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYS 133
+ +V W + V D +L
Sbjct: 117 EKLKDVFEYWNGKTTSELATSYMTEETREAVNCDVFTVGNYYYNGVGHVSVDYGKVLRVG 176
Query: 134 PEELHAMVDLKPDKKDD 150
+ + +K
Sbjct: 177 FNGIINEAKEQLEKNRS 193
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain,
HTR-like protei protein structure initiative; HET: MSE
I3A; 1.73A {Haloarcula marismortui atcc 43049}
Length = 126
Score = 25.2 bits (56), Expect = 5.7
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 129 LLGYSPEELHAM 140
LGY E+
Sbjct: 49 ELGYDESEVLGR 60
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 26.0 bits (58), Expect = 6.5
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 9 YYSSFSDSKPPYVQPASMLAGYSGSGPC---FTGSG 41
Y S + + P + A +A + FT G
Sbjct: 88 YASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGG 123
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 25.8 bits (57), Expect = 6.7
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 85 IRKNKPKMNYEKL-------SRGLRYYYDKNIIHK 112
+R K ++ K +G+ Y + K I+HK
Sbjct: 120 VRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHK 154
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory
system, two-component signal transduction, transferase,
phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Length = 111
Score = 25.1 bits (55), Expect = 7.4
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 127 QTLLGYSPEEL 137
+ LGY E+
Sbjct: 29 KLHLGYLQGEM 39
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 25.9 bits (56), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 85 IRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY 118
I+K + N E L +G+RYY +N I K Y
Sbjct: 34 IQKLIDEHNPEPLLKGVRYYMCENDIEKKRRTYY 67
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 25.3 bits (56), Expect = 8.9
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 5 DTSYYYSSFSDSKPPYVQPASML-AGYSGSGPC 36
D Y+ +++ ++ ML AG S C
Sbjct: 159 DAKYHLGAYTGDDVRIIRD-DMLCAGNSQRDSC 190
>3pfz_A Cellobiohydrolase 1 catalytic domain; cellulose; HET: PCA NAG BMA
MAN CTT CBI; 1.10A {Talaromyces emersonii} PDB: 1q9h_A*
3pfj_A* 3pfx_A* 3pl3_A*
Length = 437
Score = 25.3 bits (55), Expect = 9.9
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 1 MSIGDTSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSG 41
MS+ D + DS P + G C T SG
Sbjct: 368 MSLWDDYAAQMLWLDSDYPTDADPTTPGI--ARGTCPTDSG 406
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.441
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,480,173
Number of extensions: 140269
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 47
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)