RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8488
(150 letters)
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 183 bits (466), Expect = 2e-61
Identities = 108/135 (80%), Positives = 118/135 (87%), Gaps = 9/135 (6%)
Query: 11 SSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWE 70
+ + KP PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWE
Sbjct: 17 ADLNKDKPVI--PAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWE 67
Query: 71 FKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLL 130
FKL+DPDEVARRWG RKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ+LL
Sbjct: 68 FKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 127
Query: 131 GYSPEELHAMVDLKP 145
GY+PEELHAM+D+KP
Sbjct: 128 GYTPEELHAMLDVKP 142
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 110
Score = 166 bits (421), Expect = 7e-55
Identities = 69/106 (65%), Positives = 81/106 (76%)
Query: 43 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 102
IQLWQFLLELLTDK + ISW GD EFKL P+ VA++WG RKNKP MNYEKLSR LR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 103 YYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKK 148
YYYD ++I K GKR+VY+FVCDL+TL+GYS EL+ +V KK
Sbjct: 61 YYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVIECEQKK 106
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 143 bits (362), Expect = 4e-46
Identities = 59/84 (70%), Positives = 67/84 (79%)
Query: 39 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 98
GSG IQLWQFLLELL+D + I+W G EFK+TDPDEVARRWG RK+KP MNY+KLS
Sbjct: 2 GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61
Query: 99 RGLRYYYDKNIIHKTAGKRYVYRF 122
R LRYYYDKNI+ K GKRY Y+F
Sbjct: 62 RALRYYYDKNIMTKVHGKRYAYKF 85
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 140 bits (355), Expect = 4e-45
Identities = 52/84 (61%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 43 IQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGL 101
+ LWQFLL+LL ++ ISWT DG EFKL D +EVAR WG+RKNK MNY+KLSR L
Sbjct: 1 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 60
Query: 102 RYYYDKNIIHKTAGKRYVYRFVCD 125
RYYYDKNII K +G+++VY+FV
Sbjct: 61 RYYYDKNIIRKVSGQKFVYKFVSY 84
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 141 bits (357), Expect = 1e-44
Identities = 50/87 (57%), Positives = 61/87 (70%)
Query: 43 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 102
I LWQFLL+LL + I WT + +FKL +EVAR WGIRKNKP MNY+KLSR LR
Sbjct: 4 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 63
Query: 103 YYYDKNIIHKTAGKRYVYRFVCDLQTL 129
YYY KNII K G+++VY+FV + L
Sbjct: 64 YYYVKNIIKKVNGQKFVYKFVSYPEIL 90
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 131 bits (331), Expect = 2e-41
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 44 QLWQFLLELLTD-KTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGL 101
LW+F+ +LL + + W + F++ + +A+ WG RK +M YEKLSR L
Sbjct: 3 HLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRAL 62
Query: 102 RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEEL 137
RYYY I+ + +R VY+F + G+ ++L
Sbjct: 63 RYYYKTGILERV-DRRLVYKFGKNAH---GWQEDKL 94
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets
transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 130 bits (329), Expect = 3e-41
Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 42 PIQLWQFLLELLTDK-TCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSR 99
PI LWQFL ELL + FI W + FK+ D +VAR WGIRKN+P MNY+KLSR
Sbjct: 2 PIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSR 61
Query: 100 GLRYYYDKNIIHKT-AGKRYVYRFVC 124
+R YY K II K +R VY+FV
Sbjct: 62 SIRQYYKKGIIRKPDISQRLVYQFVH 87
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 125 bits (316), Expect = 3e-39
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 43 IQLWQFLLELLTDKTCQAFISWTGDG---WEFKLTDPDEVARRWGIRK-NKPKMNYEKLS 98
I+L+QFLL+LL + I W ++F + +A RWGI+K N+ KM YEK++
Sbjct: 2 IRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMA 61
Query: 99 RGLRYYYDKNIIHKTAGKRYVYRFVCDL 126
R LR Y + K K+ Y+F ++
Sbjct: 62 RALRNYGKTGEVKKVK-KKLTYQFSGEV 88
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila
melanogaster [TaxId: 7227]}
Length = 106
Score = 32.2 bits (73), Expect = 0.006
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 39 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 98
GSG L L+ D I WT DG F + + + A+ K N
Sbjct: 1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKH-NNMASFI 59
Query: 99 RGLRYY 104
R L Y
Sbjct: 60 RQLNMY 65
>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum
sativum) [TaxId: 3888]}
Length = 340
Score = 33.0 bits (75), Expect = 0.009
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 22 QPASML--AGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEV 79
QP S L AGY L K F + EF LT +
Sbjct: 162 QPGSNLLAAGYCMYSSSVI-----------FVLTIGKGVFVF-TLDPLYGEFVLTQENLQ 209
Query: 80 ARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVC 124
+ G + + NY+ L+ Y D +GK Y R++
Sbjct: 210 IPKSGKIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIG 254
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast
(Kluyveromyces lactis) [TaxId: 28985]}
Length = 92
Score = 30.2 bits (68), Expect = 0.031
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 49 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKN 108
L ++ DK+ + FI W+ G + + + + + K N+ R L Y
Sbjct: 9 LWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHS-NFASFVRQLNMYGWHK 67
Query: 109 IIHKTAGKRYVY 120
+ +G
Sbjct: 68 VQDVKSGSMLSN 79
>d1u58a2 d.19.1.1 (A:8-144) Immunomodulatory protein m144, alpha-1
and alpha-2 domains {Murine cytomegalovirus [TaxId:
10366]}
Length = 137
Score = 26.2 bits (57), Expect = 1.4
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 100 GLRYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMV 141
GLRY Y + +R D + +GYS + H +
Sbjct: 3 GLRYAYTLVVDGTANTRRCFGTGHVDGEAFVGYSNNKTHGIG 44
>d1i5pa2 b.77.2.1 (A:264-472) delta-Endotoxin (insectocide),
middle domain {Bacillus thuringiensis subsp. kurstaki,
CRY2AA [TaxId: 29339]}
Length = 209
Score = 25.3 bits (55), Expect = 2.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 31 SGSGPCFTGSGPIQLWQFLLELLTDKT 57
SGSGP T S Q W FL L +
Sbjct: 15 SGSGPQQTQSFTAQNWPFLYSLFQVNS 41
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus
norvegicus [TaxId: 10116]}
Length = 186
Score = 25.4 bits (55), Expect = 2.9
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 51 ELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYYDKNII 110
ELL +T I + + + +EV + + ++ +Y Y +N++
Sbjct: 1 ELLKPRTLADLIRILHELFAGDEVNVEEV-QAVLEAYESNPAEWALYAKFDQYRYTRNLV 59
Query: 111 HKTAGK 116
+ GK
Sbjct: 60 DQGNGK 65
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus
subtilis [TaxId: 1423]}
Length = 109
Score = 24.2 bits (52), Expect = 5.4
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 21/83 (25%)
Query: 78 EVARRWGIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQTLL------- 130
+VA G+ R L +Y + +++ +A YR D
Sbjct: 7 QVAEISGVSI-----------RTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFF 55
Query: 131 ---GYSPEELHAMVDLKPDKKDD 150
G+ +E+ M+D +
Sbjct: 56 KEIGFRLDEIKEMLDHPNFDRKA 78
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII,
C-terminal and dimerization domains {Bacteriophage T4
[TaxId: 10665]}
Length = 54
Score = 22.9 bits (49), Expect = 6.2
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 76 PDEVARRWGIRKNKPKMNYEKLSRGLRY 103
D+ + R K +M E L RG Y
Sbjct: 7 GDKS--KEFSRLGKEEMMAEMLQRGFEY 32
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 135
Score = 24.1 bits (52), Expect = 6.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 36 CFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGW 69
C G + LW EL+T+++ ++ W D W
Sbjct: 99 CVEEDGTVLLWSAEEELVTEESWESVWHWARDVW 132
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 329
Score = 24.2 bits (52), Expect = 7.2
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 4 GDTSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFIS 63
G T+ YY+ K + G C TG G W + L + I
Sbjct: 84 GSTTSYYAVAVVKKGTEFT----VNDLQGKTSCHTGLGRSAGWNIPIGTLLHRG---AIE 136
Query: 64 WTGD 67
W G
Sbjct: 137 WEGI 140
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 24.5 bits (52), Expect = 7.6
Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 12/43 (27%)
Query: 76 PDEVARRWGIRKNKPKMNY------------EKLSRGLRYYYD 106
+++AR+ ++ P ++ + L++ YY
Sbjct: 6 KEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQAWAYYS 48
>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of iota-toxin
{Clostridium perfringens [TaxId: 1502]}
Length = 207
Score = 24.1 bits (52), Expect = 7.6
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 14/71 (19%)
Query: 67 DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRYYY------DKNIIH--------K 112
+ E L ++ A + ++ NY + + Y +K + K
Sbjct: 23 ERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAISKNK 82
Query: 113 TAGKRYVYRFV 123
VY F
Sbjct: 83 IDKPINVYYFE 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.441
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 638,033
Number of extensions: 30539
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 25
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)