BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8490
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 80/103 (77%), Gaps = 9/103 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 41 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 93
Query: 170 RRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
RRWG RKNKPKMNYEKLSRGLR Y+K + +R+ R
Sbjct: 94 RRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 134
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 72/82 (87%), Gaps = 7/82 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 20 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 72
Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
RRWG RKNKPKMNYEKLSRGLR
Sbjct: 73 RRWGKRKNKPKMNYEKLSRGLR 94
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 72/82 (87%), Gaps = 7/82 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 41 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 93
Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
RRWG RKNKPKMNYEKLSRGLR
Sbjct: 94 RRWGKRKNKPKMNYEKLSRGLR 115
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 80/103 (77%), Gaps = 9/103 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 42 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 94
Query: 170 RRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIR 212
RRWG RKNKPKMNYEKLSRGLR Y+K + +R+ R
Sbjct: 95 RRWGKRKNKPKMNYEKLSRGLRYY--YDKNIIHKTAGKRYVYR 135
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 72/82 (87%), Gaps = 7/82 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 25 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 77
Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
RRWG RKNKPKMNYEKLSRGLR
Sbjct: 78 RRWGKRKNKPKMNYEKLSRGLR 99
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 72/82 (87%), Gaps = 7/82 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
V PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVA
Sbjct: 21 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVA 73
Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
RRWG RKNKPKMNYEKLSRGLR
Sbjct: 74 RRWGKRKNKPKMNYEKLSRGLR 95
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25
Structures
pdb|2STW|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX,
Restrained Regularized Mean Structure
Length = 96
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 67/80 (83%), Positives = 71/80 (88%), Gaps = 7/80 (8%)
Query: 112 PASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARR 171
PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVARR
Sbjct: 3 PAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARR 55
Query: 172 WGIRKNKPKMNYEKLSRGLR 191
WG RKNKPKMNYEKLSRGLR
Sbjct: 56 WGKRKNKPKMNYEKLSRGLR 75
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/82 (81%), Positives = 71/82 (86%), Gaps = 7/82 (8%)
Query: 110 VQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVA 169
V PA+ LAGY TGSGPIQLWQFLLELLTDK+ Q+FISWTGDGWEFKL+DPDEVA
Sbjct: 50 VIPAAALAGY-------TGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVA 102
Query: 170 RRWGIRKNKPKMNYEKLSRGLR 191
RRWG RKNKPKMNYEKLSRGLR
Sbjct: 103 RRWGKRKNKPKMNYEKLSRGLR 124
>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|F Chain F, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K79|A Chain A, Ets-1(331-440)+ggaa Duplex
pdb|1K79|D Chain D, Ets-1(331-440)+ggaa Duplex
pdb|1K7A|A Chain A, Ets-1(331-440)+ggag Duplex
pdb|1K7A|D Chain D, Ets-1(331-440)+ggag Duplex
Length = 110
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/64 (93%), Positives = 63/64 (98%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
GSGPIQLWQFLLELLTDK+CQ+FISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLS
Sbjct: 1 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLS 60
Query: 188 RGLR 191
RGLR
Sbjct: 61 RGLR 64
>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
pdb|2YPR|B Chain B, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
Length = 102
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 50/64 (78%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
GSG IQLWQFLLELL D+ I+W G EFKLTDPDEVARRWG RK+KP MNY+KLS
Sbjct: 4 GSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLS 63
Query: 188 RGLR 191
R LR
Sbjct: 64 RALR 67
>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1
Length = 98
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 51/64 (79%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
GSG IQLWQFLLELL+D + I+W G EFK+TDPDEVARRWG RK+KP MNY+KLS
Sbjct: 2 GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61
Query: 188 RGLR 191
R LR
Sbjct: 62 RALR 65
>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|C Chain C, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|D Chain D, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4B06|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1
Complexed With Dna
Length = 106
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%)
Query: 123 GPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMN 182
GP G +QLWQFL+ LL D + FI+WTG G EFKL +P+EVARRWGI+KN+P MN
Sbjct: 3 GPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMN 62
Query: 183 YEKLSRGLR 191
Y+KLSR LR
Sbjct: 63 YDKLSRSLR 71
>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 110
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 47/60 (78%)
Query: 132 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
IQLWQFLLELLTDK + ISW GD EFKL P+ VA++WG RKNKP MNYEKLSR LR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
pdb|1DUX|F Chain F, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
Length = 94
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 131 PIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 189
+ LWQFLL+LL ++ ISWT DG EFKL D +EVAR WG+RKNK MNY+KLSR
Sbjct: 4 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 63
Query: 190 LR 191
LR
Sbjct: 64 LR 65
>pdb|1YO5|C Chain C, Analysis Of The 2.0a Crystal Structure Of The Protein-Dna
Complex Of Human Pdef Ets Domain Bound To The Prostate
Specific Antigen Regulatory Site
Length = 97
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 128 GSGPIQLWQFLLELLTD-KTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEK 185
GS PI LWQFL ELL + FI W + FK+ D +VAR WGIRKN+P MNY+K
Sbjct: 7 GSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDK 66
Query: 186 LSRGLRR 192
LSR +R+
Sbjct: 67 LSRSIRQ 73
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 157
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 32/44 (72%)
Query: 148 QAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
+ I WT + +FKL +EVAR WGIRKNKP MNY+KLSR LR
Sbjct: 22 KHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 65
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228
G K + E+VAR WGIRKNKP MNY+KLSR LR
Sbjct: 32 GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 65
>pdb|1BC7|C Chain C, Serum Response Factor Accessory Protein 1a (Sap-1)DNA
Complex
pdb|1BC8|C Chain C, Structures Of Sap-1 Bound To Dna Sequences From The E74
And C-Fos Promoters Provide Insights Into How Ets
Proteins Discriminate Between Related Dna Targets
pdb|1K6O|A Chain A, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 93
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 32/44 (72%)
Query: 148 QAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
+ I WT + +FKL +EVAR WGIRKNKP MNY+KLSR LR
Sbjct: 21 KHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 64
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228
G K + E+VAR WGIRKNKP MNY+KLSR LR
Sbjct: 31 GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 64
>pdb|2DAO|A Chain A, Solution Structure Of Ets Domain Transcriptional Factor
Etv6 Protein
Length = 118
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 118 GYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRK 176
G SGS C LW ++ +LL+D + FI W + F++ DP+ +AR WG K
Sbjct: 1 GSSGSSGCRL------LWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHK 54
Query: 177 NKPKMNYEKLSRGLR 191
N+ M YEK+SR LR
Sbjct: 55 NRTNMTYEKMSRALR 69
>pdb|2LF7|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To Q436
Length = 106
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 186
GS LW ++ +LL+D + FI W + F++ DP+ +AR WG KN+ M YEK+
Sbjct: 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60
Query: 187 SRGLR 191
SR LR
Sbjct: 61 SRALR 65
>pdb|2LF8|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To R458
Length = 128
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 186
GS LW ++ +LL+D + FI W + F++ DP+ +AR WG KN+ M YEK+
Sbjct: 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60
Query: 187 SRGLR 191
SR LR
Sbjct: 61 SRALR 65
>pdb|1PUE|E Chain E, Pu.1 Ets Domain-Dna Complex
pdb|1PUE|F Chain F, Pu.1 Ets Domain-Dna Complex
Length = 89
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 131 PIQLWQFLLELLTDKTCQAFISWTGDG---WEFKLTDPDEVARRWGIRK-NKPKMNYEKL 186
I+L+QFLL+LL + I W ++F + +A RWGI+K N+ KM YEK+
Sbjct: 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60
Query: 187 SRGLRRKTGYEKASRFEKVARR 208
+R LR Y K +KV ++
Sbjct: 61 ARALR---NYGKTGEVKKVKKK 79
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 203 EKVARRWGIRK-NKPKMNYEKLSRGLR 228
E +A RWGI+K N+ KM YEK++R LR
Sbjct: 39 EALAHRWGIQKGNRKKMTYEKMARALR 65
>pdb|1WWX|A Chain A, Solution Structure Of The Ets-Domain Of The Ets Domain
Transcription Factor
Length = 107
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 133 QLWQFLLELLT--DKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 189
LW+F+ +LL ++ C + W + F++ + +A+ WG RK +M YEKLSR
Sbjct: 10 HLWEFVRDLLLSPEENC-GILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRA 68
Query: 190 LRRKTGYEKASRFEKVARR 208
LR Y K E+V RR
Sbjct: 69 LRY---YYKTGILERVDRR 84
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 192 RKTGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228
R+ G + + E +A+ WG RK +M YEKLSR LR
Sbjct: 34 REQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALR 70
>pdb|3JTG|A Chain A, Crystal Structure Of Mouse Elf3 C-Terminal Dna-Binding
Domai Complex With Type Ii Tgf-Beta Receptor Promoter
Dna
Length = 103
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 133 QLWQFLLELLTD-KTCQAFISWTG--DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 189
LW+F+ ++L + + + W +G FK + VA+ WG +K M YEKLSR
Sbjct: 6 HLWEFIRDILIHPELNEGLMKWENRHEG-VFKFLRSEAVAQLWGQKKKNSNMTYEKLSRA 64
Query: 190 LR 191
+R
Sbjct: 65 MR 66
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 179 PKMNYEKLSRGLRRKTGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228
P++N E L + R G K R E VA+ WG +K M YEKLSR +R
Sbjct: 18 PELN-EGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMR 66
>pdb|3S0T|A Chain A, Crystal Structure Of The Cofa Type Iv Pilin Subunit From
Enterotoxigenic E. Coli
pdb|3S0T|B Chain B, Crystal Structure Of The Cofa Type Iv Pilin Subunit From
Enterotoxigenic E. Coli
Length = 184
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 119 YSGSGPCFTGSGPIQLWQFLLEL--LTDKTCQAFISWTGDGWEF 160
Y G G T SG F +EL L+ + C++ + GD WE+
Sbjct: 78 YIGIGGAITSSGSTINKGFAMELNGLSQEQCRSILGQVGDNWEY 121
>pdb|3VOR|A Chain A, Crystal Structure Analysis Of The Cofa
Length = 182
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 119 YSGSGPCFTGSGPIQLWQFLLEL--LTDKTCQAFISWTGDGWEF 160
Y G G T SG F +EL L+ + C++ + GD WE+
Sbjct: 76 YIGIGGAITSSGSTINKGFAMELNGLSQEQCRSILGQVGDNWEY 119
>pdb|2EPG|A Chain A, Crystal Structure Of Ttha1785
pdb|2EPG|B Chain B, Crystal Structure Of Ttha1785
Length = 487
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 166 DEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARRWGI 211
+E A +G+ K + + SRGL + + RF KVA R+GI
Sbjct: 228 EEAALAFGLFKGQVTVLIHTGSRGLGHQVCQDYVERFLKVAPRYGI 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,744,397
Number of Sequences: 62578
Number of extensions: 359497
Number of successful extensions: 829
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 78
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)