Query psy8490
Match_columns 228
No_of_seqs 165 out of 379
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 20:13:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fli_A FLI-1; transcription/DN 100.0 3.5E-33 1.2E-37 218.2 2.6 82 127-211 1-82 (98)
2 4avp_A ETS translocation varia 100.0 1.9E-32 6.4E-37 216.6 2.8 81 123-206 3-83 (106)
3 1bc8_C SAP-1, protein (SAP-1 E 100.0 3.5E-32 1.2E-36 210.8 2.6 74 130-206 3-76 (93)
4 2ypr_A Protein FEV; transcript 100.0 5E-32 1.7E-36 212.9 3.3 68 127-194 3-70 (102)
5 1wwx_A E74-like factor 5 ESE-2 100.0 8.1E-32 2.8E-36 213.3 3.6 77 127-206 4-82 (107)
6 1yo5_C SAM pointed domain cont 100.0 1.5E-31 5.2E-36 208.6 2.4 68 127-194 6-75 (97)
7 1gvj_A C-ETS-1 protein, P54; t 100.0 5.4E-31 1.8E-35 218.1 2.4 77 127-206 35-111 (146)
8 1awc_A Protein (GA binding pro 100.0 9.6E-31 3.3E-35 208.0 3.4 72 132-206 1-72 (110)
9 1pue_E Protein (transcription 100.0 7E-31 2.4E-35 202.0 2.2 64 131-194 1-68 (89)
10 2nny_A C-ETS-1 protein, P54; p 100.0 1.4E-30 4.9E-35 220.1 3.0 79 127-208 60-138 (171)
11 2dao_A Transcription factor ET 100.0 1.1E-30 3.7E-35 209.9 2.0 76 128-206 5-81 (118)
12 2lf8_A Transcription factor ET 99.9 9.8E-31 3.4E-35 212.5 0.0 81 128-211 1-82 (128)
13 1hbx_G ETS-domain protein ELK- 100.0 3.1E-30 1.1E-34 215.4 0.7 76 129-207 3-78 (157)
14 3jtg_A ETS-related transcripti 100.0 2.6E-29 9E-34 197.7 4.1 73 131-206 4-78 (103)
15 1fli_A FLI-1; transcription/DN 99.4 3.5E-14 1.2E-18 110.9 0.6 35 194-228 31-65 (98)
16 1yo5_C SAM pointed domain cont 99.4 4.7E-14 1.6E-18 110.0 0.5 35 194-228 38-72 (97)
17 1bc8_C SAP-1, protein (SAP-1 E 99.4 6.8E-14 2.3E-18 108.4 0.8 34 195-228 31-64 (93)
18 1wwx_A E74-like factor 5 ESE-2 99.4 7.1E-14 2.4E-18 110.7 0.6 35 194-228 36-70 (107)
19 2ypr_A Protein FEV; transcript 99.3 1.5E-13 5.1E-18 107.9 1.5 35 194-228 33-67 (102)
20 2dao_A Transcription factor ET 99.3 1.2E-13 4.2E-18 111.0 0.6 34 195-228 36-69 (118)
21 1awc_A Protein (GA binding pro 99.3 1.4E-13 4.8E-18 109.4 0.6 35 194-228 26-60 (110)
22 1pue_E Protein (transcription 99.3 2.4E-13 8.3E-18 104.4 0.5 34 195-228 29-65 (89)
23 3jtg_A ETS-related transcripti 99.3 2.7E-13 9.4E-18 106.5 0.7 34 195-228 33-66 (103)
24 2lf8_A Transcription factor ET 99.0 2.5E-13 8.5E-18 110.5 0.0 35 194-228 31-65 (128)
25 1gvj_A C-ETS-1 protein, P54; t 99.3 4.5E-13 1.5E-17 111.0 0.6 35 194-228 65-99 (146)
26 1hbx_G ETS-domain protein ELK- 99.3 7.3E-13 2.5E-17 110.8 1.0 35 194-228 31-65 (157)
27 4avp_A ETS translocation varia 99.2 7.8E-13 2.7E-17 104.5 0.7 34 195-228 38-71 (106)
28 2nny_A C-ETS-1 protein, P54; p 99.2 9.6E-13 3.3E-17 111.4 0.6 35 194-228 90-124 (171)
29 2ldu_A Heat shock factor prote 94.5 0.031 1.1E-06 44.4 3.8 63 134-199 20-83 (125)
30 3hts_B Heat shock transcriptio 93.6 0.047 1.6E-06 42.3 3.2 67 133-201 14-80 (102)
31 1hks_A Heat-shock transcriptio 92.7 0.049 1.7E-06 41.8 2.1 60 138-199 11-70 (106)
32 3qu6_A IRF3 protein; helix-tur 28.0 39 0.0013 26.6 2.9 48 130-178 7-66 (116)
33 2dll_A Interferon regulatory f 26.7 46 0.0016 26.2 3.1 47 131-178 6-65 (121)
34 3qu3_A IRF-7, interferon regul 22.5 84 0.0029 25.4 3.9 48 130-178 11-70 (137)
35 2irf_G IRF-2, interferon regul 21.5 72 0.0025 24.8 3.3 48 130-178 4-64 (113)
No 1
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=99.97 E-value=3.5e-33 Score=218.17 Aligned_cols=82 Identities=57% Similarity=0.926 Sum_probs=73.8
Q ss_pred CCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490 127 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA 206 (228)
Q Consensus 127 ~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA 206 (228)
+++|+++|||||++||+|+++.+||+|+|++|||+++||++||++||.+|||++|||||||||||||| +...++||.
T Consensus 1 ~gsg~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY---~k~i~~Kv~ 77 (98)
T 1fli_A 1 PGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY---DKNIMTKVH 77 (98)
T ss_dssp CCCSSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH---HTTSCCCBG
T ss_pred CCCCceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH---HcCcEeecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999997 344567776
Q ss_pred HHhhh
Q psy8490 207 RRWGI 211 (228)
Q Consensus 207 R~WGi 211 (228)
.....
T Consensus 78 gkr~v 82 (98)
T 1fli_A 78 GKRYA 82 (98)
T ss_dssp GGSSB
T ss_pred CCeEE
Confidence 54443
No 2
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=99.97 E-value=1.9e-32 Score=216.55 Aligned_cols=81 Identities=57% Similarity=1.016 Sum_probs=67.0
Q ss_pred CCCCCCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhH
Q psy8490 123 GPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRF 202 (228)
Q Consensus 123 g~~~~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~p 202 (228)
|+++.++|+++|||||++||+|+++++||+|+|++++|+++||++||++||++||+++|||||||||||||| +...+
T Consensus 3 ~~~~~~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY---~kgii 79 (106)
T 4avp_A 3 GPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYY---EKGIM 79 (106)
T ss_dssp --------CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHH---HHTSE
T ss_pred CCCCCCCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH---hcCeE
Confidence 678899999999999999999999999999999999999999999999999999999999999999999997 33334
Q ss_pred HHHH
Q psy8490 203 EKVA 206 (228)
Q Consensus 203 EkVA 206 (228)
+||+
T Consensus 80 ~Kv~ 83 (106)
T 4avp_A 80 QKVA 83 (106)
T ss_dssp EECT
T ss_pred EecC
Confidence 4444
No 3
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=99.97 E-value=3.5e-32 Score=210.80 Aligned_cols=74 Identities=51% Similarity=0.854 Sum_probs=67.9
Q ss_pred CcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490 130 GPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA 206 (228)
Q Consensus 130 G~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA 206 (228)
|+++|||||++||.|+++.+||+|+|++|+|+++||++||++||.+||+++|||||||||||||| +...++||.
T Consensus 3 ~~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY---~~~il~Kv~ 76 (93)
T 1bc8_C 3 SAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYY---VKNIIKKVN 76 (93)
T ss_dssp CCCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH---HHTSEEECT
T ss_pred CcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH---hcCcEEecC
Confidence 78999999999999999999999999999999999999999999999999999999999999997 334455554
No 4
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=99.97 E-value=5e-32 Score=212.88 Aligned_cols=68 Identities=68% Similarity=1.112 Sum_probs=66.4
Q ss_pred CCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhccc
Q psy8490 127 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT 194 (228)
Q Consensus 127 ~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYY 194 (228)
+++|+++|||||++||+|+++.+||+|+++.|+|+++||++||++||++|||++||||||||||||||
T Consensus 3 ~g~g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY 70 (102)
T 2ypr_A 3 KGSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 70 (102)
T ss_dssp CCCSSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHH
T ss_pred CCCCcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999997
No 5
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=99.97 E-value=8.1e-32 Score=213.33 Aligned_cols=77 Identities=34% Similarity=0.640 Sum_probs=68.5
Q ss_pred CCCCcchhHHHHHHhhCCCC-CCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHH
Q psy8490 127 TGSGPIQLWQFLLELLTDKT-CQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEK 204 (228)
Q Consensus 127 ~~sG~i~LWqFLl~LL~d~~-~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEk 204 (228)
+++|+++|||||++||.|++ +.+||+|+|+ .|+|+|+||++||++||.+|||++|||||||||||||| +...++|
T Consensus 4 g~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY---~~~ii~K 80 (107)
T 1wwx_A 4 GSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY---KTGILER 80 (107)
T ss_dssp CCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH---HHTSEEC
T ss_pred CCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH---hcCcEEe
Confidence 57899999999999999874 7899999996 79999999999999999999999999999999999997 3333444
Q ss_pred HH
Q psy8490 205 VA 206 (228)
Q Consensus 205 VA 206 (228)
|.
T Consensus 81 v~ 82 (107)
T 1wwx_A 81 VD 82 (107)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 6
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=99.96 E-value=1.5e-31 Score=208.59 Aligned_cols=68 Identities=53% Similarity=0.920 Sum_probs=62.6
Q ss_pred CCCCcchhHHHHHHhhCCC-CCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhccc
Q psy8490 127 TGSGPIQLWQFLLELLTDK-TCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT 194 (228)
Q Consensus 127 ~~sG~i~LWqFLl~LL~d~-~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYY 194 (228)
.++++++|||||++||.|+ ++.+||+|+|+ +|+|+++||++||++||.+||+++||||||||||||||
T Consensus 6 ~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY 75 (97)
T 1yo5_C 6 LGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYY 75 (97)
T ss_dssp ---CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTT
T ss_pred CCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 5678999999999999997 57999999986 89999999999999999999999999999999999997
No 7
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=99.96 E-value=5.4e-31 Score=218.12 Aligned_cols=77 Identities=82% Similarity=1.371 Sum_probs=70.3
Q ss_pred CCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490 127 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA 206 (228)
Q Consensus 127 ~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA 206 (228)
+++|+++|||||++||.|++|.+||+|+|+++||+++||++||++||.+||+++|||||||||||||| +...++||.
T Consensus 35 ~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY---~k~ii~Kv~ 111 (146)
T 1gvj_A 35 TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYY---DKNIIHKTA 111 (146)
T ss_dssp HTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH---HTTSEEECT
T ss_pred CCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH---hcCcEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999997 333455554
No 8
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=99.96 E-value=9.6e-31 Score=208.05 Aligned_cols=72 Identities=63% Similarity=0.980 Sum_probs=65.8
Q ss_pred chhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490 132 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA 206 (228)
Q Consensus 132 i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA 206 (228)
|+|||||++||.|+++.+||+|+|++|+|+++||++||++||.+||+++|||||||||||||| +...+++|.
T Consensus 1 i~LwqFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY---~k~ii~Kv~ 72 (110)
T 1awc_A 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY---DGDMICKVQ 72 (110)
T ss_dssp CCHHHHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG---GSSSEEECT
T ss_pred CcHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH---hcCCEeecc
Confidence 689999999999999999999999999999999999999999999999999999999999997 333445554
No 9
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=99.96 E-value=7e-31 Score=202.03 Aligned_cols=64 Identities=41% Similarity=0.757 Sum_probs=61.0
Q ss_pred cchhHHHHHHhhCCCCCCCceeeecC-CceEEEc--ChHHHHHHHhhhc-CCCCchHHHHHhhhhccc
Q psy8490 131 PIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT--DPDEVARRWGIRK-NKPKMNYEKLSRGLRRKT 194 (228)
Q Consensus 131 ~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlv--dpe~VArlWG~~K-nk~~MtYeKmSRaLRyYY 194 (228)
+++|||||++||.|+++.+||+|||+ .|+|+++ ||++||++||.+| |+++||||||||||||||
T Consensus 1 ~i~LwqFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY 68 (89)
T 1pue_E 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYG 68 (89)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHH
Confidence 47999999999999999999999996 6999997 8999999999999 899999999999999997
No 10
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=99.96 E-value=1.4e-30 Score=220.07 Aligned_cols=79 Identities=78% Similarity=1.295 Sum_probs=71.5
Q ss_pred CCCCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490 127 TGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA 206 (228)
Q Consensus 127 ~~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA 206 (228)
.++|+++|||||++||.|+++.+||+|+|+++||+++||++||++||++|||++|||||||||||||| +...++||.
T Consensus 60 ~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY---~k~ii~Kv~ 136 (171)
T 2nny_A 60 TGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYY---DKNIIHKTA 136 (171)
T ss_dssp HTCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG---TTTSEEECT
T ss_pred CCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH---hcCcEeecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999997 333455655
Q ss_pred HH
Q psy8490 207 RR 208 (228)
Q Consensus 207 R~ 208 (228)
..
T Consensus 137 Gk 138 (171)
T 2nny_A 137 GK 138 (171)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 11
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=1.1e-30 Score=209.90 Aligned_cols=76 Identities=38% Similarity=0.724 Sum_probs=68.5
Q ss_pred CCCcchhHHHHHHhhCCCCCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490 128 GSGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA 206 (228)
Q Consensus 128 ~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA 206 (228)
-+|+++|||||++||.|+++.+||+|+|+ .++|+|+||++||++||.+|||++|||||||||||||| +...++||.
T Consensus 5 ~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY---~k~ii~Kv~ 81 (118)
T 2dao_A 5 SSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYY---KLNIIRKEP 81 (118)
T ss_dssp CCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH---HHTSEECCS
T ss_pred cCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH---hcCCEEecc
Confidence 45789999999999999999999999997 58999999999999999999999999999999999997 333455554
No 12
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=99.92 E-value=9.8e-31 Score=212.50 Aligned_cols=81 Identities=36% Similarity=0.664 Sum_probs=73.5
Q ss_pred CCCcchhHHHHHHhhCCCCCCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490 128 GSGPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA 206 (228)
Q Consensus 128 ~sG~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA 206 (228)
|+|.++|||||++||.|+++.+||+|+|+ .|+|+|+||++||++||.+|||++|||||||||||||| +...++||.
T Consensus 1 ~s~~~~LWqFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY---~k~Ii~Kv~ 77 (128)
T 2lf8_A 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYY---KLNIIRKEP 77 (128)
Confidence 57899999999999999999999999997 58999999999999999999999999999999999997 455688887
Q ss_pred HHhhh
Q psy8490 207 RRWGI 211 (228)
Q Consensus 207 R~WGi 211 (228)
.....
T Consensus 78 Gqrlv 82 (128)
T 2lf8_A 78 GQRLL 82 (128)
Confidence 55444
No 13
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=99.95 E-value=3.1e-30 Score=215.37 Aligned_cols=76 Identities=50% Similarity=0.830 Sum_probs=69.3
Q ss_pred CCcchhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHHH
Q psy8490 129 SGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVAR 207 (228)
Q Consensus 129 sG~i~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVAR 207 (228)
.|+++|||||++||.|+++.+||+|+|+.|+|+++||++||++||.+|||++|||||||||||||| +...++||..
T Consensus 3 ~~~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY---~k~Ii~KV~G 78 (157)
T 1hbx_G 3 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYY---VKNIIKKVNG 78 (157)
T ss_dssp CCCCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHH---HTTSEEECSS
T ss_pred CCcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHH---hcCcEEecCC
Confidence 378999999999999999999999999999999999999999999999999999999999999997 3444566653
No 14
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=99.95 E-value=2.6e-29 Score=197.66 Aligned_cols=73 Identities=32% Similarity=0.632 Sum_probs=65.1
Q ss_pred cchhHHHHHHhhCCCC-CCCceeeecC-CceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhhHHHHH
Q psy8490 131 PIQLWQFLLELLTDKT-CQAFISWTGD-GWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVA 206 (228)
Q Consensus 131 ~i~LWqFLl~LL~d~~-~~~~I~Wtg~-~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~pEkVA 206 (228)
.++|||||++||.|++ +.+||+|+|+ .|+|+|+||++||++||++|||++|||||||||||||| +...++||+
T Consensus 4 ~~~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy---~~~ii~Kv~ 78 (103)
T 3jtg_A 4 GTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYY---KREILERVD 78 (103)
T ss_dssp CCSHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHH---HTTSBCCCT
T ss_pred cccHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH---hcCcEEecC
Confidence 4599999999999986 8899999996 79999999999999999999999999999999999997 334455554
No 15
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=99.39 E-value=3.5e-14 Score=110.88 Aligned_cols=35 Identities=60% Similarity=0.951 Sum_probs=33.6
Q ss_pred cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
-|+||++++|+|||+||++||+|+|||||||||||
T Consensus 31 ~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLR 65 (98)
T 1fli_A 31 NGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALR 65 (98)
T ss_dssp SSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHH
Confidence 47999999999999999999999999999999997
No 16
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=99.38 E-value=4.7e-14 Score=109.97 Aligned_cols=35 Identities=57% Similarity=0.937 Sum_probs=33.5
Q ss_pred cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
-|+||++++|+|||+||.+||+|+|||||||||||
T Consensus 38 ~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLR 72 (97)
T 1yo5_C 38 KGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIR 72 (97)
T ss_dssp TTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 47899999999999999999999999999999997
No 17
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=99.37 E-value=6.8e-14 Score=108.35 Aligned_cols=34 Identities=68% Similarity=1.011 Sum_probs=33.0
Q ss_pred chhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 195 G~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
|.||++++|+|||+||++||+|+|||||||||||
T Consensus 31 g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLR 64 (93)
T 1bc8_C 31 GQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 64 (93)
T ss_dssp SEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 7899999999999999999999999999999997
No 18
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=99.36 E-value=7.1e-14 Score=110.68 Aligned_cols=35 Identities=46% Similarity=0.781 Sum_probs=33.4
Q ss_pred cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
.|+||++++|+|||+||++||+|+|||||||||||
T Consensus 36 ~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLR 70 (107)
T 1wwx_A 36 QGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALR 70 (107)
T ss_dssp TTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 46899999999999999999999999999999997
No 19
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=99.34 E-value=1.5e-13 Score=107.92 Aligned_cols=35 Identities=60% Similarity=0.938 Sum_probs=33.7
Q ss_pred cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
-|.||++++|+|||+||++||+|+|||||||||||
T Consensus 33 ~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLR 67 (102)
T 2ypr_A 33 HGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALR 67 (102)
T ss_dssp TTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHT
T ss_pred CceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 47899999999999999999999999999999998
No 20
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-13 Score=110.98 Aligned_cols=34 Identities=41% Similarity=0.639 Sum_probs=32.9
Q ss_pred chhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 195 G~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
|+||++++++|||+||++||+|+|||||||||||
T Consensus 36 g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLR 69 (118)
T 2dao_A 36 KIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALR 69 (118)
T ss_dssp TEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHH
Confidence 5899999999999999999999999999999997
No 21
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=99.33 E-value=1.4e-13 Score=109.45 Aligned_cols=35 Identities=63% Similarity=0.917 Sum_probs=33.5
Q ss_pred cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
-|+||++++|+|||+||.+||+|+|||||||||||
T Consensus 26 ~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLR 60 (110)
T 1awc_A 26 EGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60 (110)
T ss_dssp SSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHH
Confidence 47999999999999999999999999999999997
No 22
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=99.30 E-value=2.4e-13 Score=104.44 Aligned_cols=34 Identities=53% Similarity=0.862 Sum_probs=31.5
Q ss_pred chhhhh--hHHHHHHHhhhhc-CCCCCchhhhhcccC
Q psy8490 195 GYEKAS--RFEKVARRWGIRK-NKPKMNYEKLSRGLR 228 (228)
Q Consensus 195 G~~K~~--~pEkVAR~WGi~K-n~p~m~ydK~sralr 228 (228)
|+||++ ++|+|||+||++| |+|+|||||||||||
T Consensus 29 g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLR 65 (89)
T 1pue_E 29 GTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALR 65 (89)
T ss_dssp TEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred cEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHH
Confidence 678875 7999999999999 999999999999997
No 23
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=99.30 E-value=2.7e-13 Score=106.54 Aligned_cols=34 Identities=50% Similarity=0.750 Sum_probs=32.8
Q ss_pred chhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 195 G~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
|.||++++|+||++||++||+|+|||||||||||
T Consensus 33 g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLR 66 (103)
T 3jtg_A 33 GVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMR 66 (103)
T ss_dssp TEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred ceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHH
Confidence 6899999999999999999999999999999997
No 24
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=98.96 E-value=2.5e-13 Score=110.45 Aligned_cols=35 Identities=40% Similarity=0.635 Sum_probs=33.4
Q ss_pred cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
-|.||++++++|||+||.+||+|+|||||||||||
T Consensus 31 ~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALR 65 (128)
T 2lf8_A 31 SKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALR 65 (128)
Confidence 36899999999999999999999999999999998
No 25
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=99.27 E-value=4.5e-13 Score=111.05 Aligned_cols=35 Identities=71% Similarity=0.959 Sum_probs=33.5
Q ss_pred cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
.|.||++++|+|||+||++||+|+|||||||||||
T Consensus 65 ~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLR 99 (146)
T 1gvj_A 65 GWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 99 (146)
T ss_dssp TTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 46899999999999999999999999999999997
No 26
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=99.26 E-value=7.3e-13 Score=110.78 Aligned_cols=35 Identities=66% Similarity=0.982 Sum_probs=33.4
Q ss_pred cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
-|+||++++|+|||+||++||+|+|||||||||||
T Consensus 31 ~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALR 65 (157)
T 1hbx_G 31 DGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 65 (157)
T ss_dssp SSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHH
T ss_pred CCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHH
Confidence 37899999999999999999999999999999997
No 27
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=99.25 E-value=7.8e-13 Score=104.45 Aligned_cols=34 Identities=62% Similarity=0.899 Sum_probs=32.7
Q ss_pred chhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 195 GYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 195 G~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
+.||++++|+|||+||++||+|+|||||||||||
T Consensus 38 ~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLR 71 (106)
T 4avp_A 38 MEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLR 71 (106)
T ss_dssp TEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred ceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHH
Confidence 5799999999999999999999999999999997
No 28
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=99.23 E-value=9.6e-13 Score=111.39 Aligned_cols=35 Identities=71% Similarity=0.959 Sum_probs=33.5
Q ss_pred cchhhhhhHHHHHHHhhhhcCCCCCchhhhhcccC
Q psy8490 194 TGYEKASRFEKVARRWGIRKNKPKMNYEKLSRGLR 228 (228)
Q Consensus 194 YG~~K~~~pEkVAR~WGi~Kn~p~m~ydK~sralr 228 (228)
-|.||++++|+|||+||++||+|+|||||||||||
T Consensus 90 ~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLR 124 (171)
T 2nny_A 90 GWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLR 124 (171)
T ss_dssp TTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 46899999999999999999999999999999997
No 29
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=94.46 E-value=0.031 Score=44.44 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=45.0
Q ss_pred hHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHH-HhhhcCCCCchHHHHHhhhhcccchhhh
Q psy8490 134 LWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARR-WGIRKNKPKMNYEKLSRGLRRKTGYEKA 199 (228)
Q Consensus 134 LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArl-WG~~Knk~~MtYeKmSRaLRyYYG~~K~ 199 (228)
.-.=|.++|+|+.+.++|+|...+..|.|.|+++.++. --.. =.--+|..+-|-|-.| |.-|.
T Consensus 20 F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~y--Fkh~nfsSFvRQLN~Y-GF~Kv 83 (125)
T 2ldu_A 20 FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKY--FKHNNMASFVRQLNMY-GFRKV 83 (125)
T ss_dssp HHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHH--SSCCCHHHHHHHHHHT-TCEEE
T ss_pred HHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHh--cCCCcHHHHHHHhccc-CceEE
Confidence 33445577889999999999999999999999988752 2111 1223688888888775 55444
No 30
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=93.59 E-value=0.047 Score=42.34 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=47.0
Q ss_pred hhHHHHHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhhhh
Q psy8490 133 QLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASR 201 (228)
Q Consensus 133 ~LWqFLl~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~~~ 201 (228)
..-.=|.++|+|+.+.++|+|...+.-|.|.|++++++.==. +-=..-+|..+-|-|-.| |.-|..+
T Consensus 14 ~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp-~yFkh~nfsSFvRQLN~Y-GF~Kv~~ 80 (102)
T 3hts_B 14 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLP-KYFKHSNFASFVRQLNMY-GWHKVQD 80 (102)
T ss_dssp HHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHH-HHCSSCCHHHHHHHHHHT-TEEECC-
T ss_pred cHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHH-HhcCCCcHHHHHHHhhcC-CceEeec
Confidence 344445677889999999999999999999999888753111 111234678888888775 6656543
No 31
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=92.66 E-value=0.049 Score=41.80 Aligned_cols=60 Identities=27% Similarity=0.408 Sum_probs=42.7
Q ss_pred HHHhhCCCCCCCceeeecCCceEEEcChHHHHHHHhhhcCCCCchHHHHHhhhhcccchhhh
Q psy8490 138 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKA 199 (228)
Q Consensus 138 Ll~LL~d~~~~~~I~Wtg~~geFrlvdpe~VArlWG~~Knk~~MtYeKmSRaLRyYYG~~K~ 199 (228)
|.++|+|+.+.++|+|...+..|.|.|+++.++.==. +-=..-+|..+-|-|-.| |.-|.
T Consensus 11 L~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp-~yFkh~n~~SFvRQLN~Y-GF~Kv 70 (106)
T 1hks_A 11 LWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLP-LNYKHNNMASFIRQLNMY-GFHKI 70 (106)
T ss_dssp HHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTST-TTTSCCCHHHHHHHHHHH-CCCCS
T ss_pred HHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhH-HhcCCCcHHHHHHhhhcC-CCeEE
Confidence 4577899999999999999999999999876542111 111224788888888775 54444
No 32
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=28.04 E-value=39 Score=26.60 Aligned_cols=48 Identities=10% Similarity=0.306 Sum_probs=36.3
Q ss_pred CcchhHHHHHHhhCCCCCCCceeeecC-CceEEEc-----------ChHHHHHHHhhhcCC
Q psy8490 130 GPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT-----------DPDEVARRWGIRKNK 178 (228)
Q Consensus 130 G~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlv-----------dpe~VArlWG~~Knk 178 (228)
.+.+|-.+|++.++...+.+ +.|+|+ ...|+|- +...+-+.|..++++
T Consensus 7 ~k~rlr~WL~~qidsg~ypG-l~W~d~~kt~FrIPWkH~~r~~~~~~D~~IFkaWA~~~Gk 66 (116)
T 3qu6_A 7 PKPRILPWLVSQLDLGQLEG-VAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGA 66 (116)
T ss_dssp --CCHHHHHHHHHHHTCSTT-CEECSTTSCEEEEECCC--------CCCSHHHHHHHHTTS
T ss_pred CCccHHHHHHHHhccCCcCC-cEEEcCCCCEEEecCcCCCcCCcchhHHHHHHHHHHhcCc
Confidence 45689999999999999975 579996 5789982 123577889888865
No 33
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.75 E-value=46 Score=26.17 Aligned_cols=47 Identities=19% Similarity=0.459 Sum_probs=37.8
Q ss_pred cchhHHHHHHhhCCCCCCCceeeecC-CceEEEc-------Ch-----HHHHHHHhhhcCC
Q psy8490 131 PIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT-------DP-----DEVARRWGIRKNK 178 (228)
Q Consensus 131 ~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlv-------dp-----e~VArlWG~~Knk 178 (228)
..+|-.+|++-++...|++ +.|.|+ ...|+|- |. ..+-+.|..++++
T Consensus 6 ~~~lr~WL~~qidsg~ypG-L~W~d~ekt~FrIPWkH~~r~~~~~~~D~~iFkaWA~~~Gk 65 (121)
T 2dll_A 6 SGKLRQWLIDQIDSGKYPG-LVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGK 65 (121)
T ss_dssp SCCHHHHHHHHHHHTCSSS-CEESSSSSCEEEEECCCCCCSSSCHHHHTHHHHHHHHHHSC
T ss_pred ccchHHHHHHHhccCCCCC-ceEecCCCCEEEeeCccCCcCCCCcchhhHHHHHHHHHcCC
Confidence 4589999999999999987 789996 5899992 11 3677899988875
No 34
>3qu3_A IRF-7, interferon regulatory factor 7; helix-turn-helix, gene regulation, DNA binding protein; 1.30A {Mus musculus} SCOP: a.4.5.0
Probab=22.54 E-value=84 Score=25.40 Aligned_cols=48 Identities=10% Similarity=0.448 Sum_probs=38.1
Q ss_pred CcchhHHHHHHhhCCCCCCCceeeecC-CceEEEc-----------ChHHHHHHHhhhcCC
Q psy8490 130 GPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT-----------DPDEVARRWGIRKNK 178 (228)
Q Consensus 130 G~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlv-----------dpe~VArlWG~~Knk 178 (228)
..++|-..|++.++...|.+ +.|+|+ ...|+|- +...+-+.|..++++
T Consensus 11 ~r~rlrpWL~~qidSg~ypG-L~W~d~~kt~FrIPWkHa~r~d~~~~D~~IFkaWA~~tGk 70 (137)
T 3qu3_A 11 QRVLFGDWLLGEVSSGQYEG-LQWLNEARTVFRVPWKHFGRRDLDEEDAQIFKAWAVARGR 70 (137)
T ss_dssp -CCCHHHHHHHHHHHTCSTT-CEESSTTCCEEEEECCCCTTSCCCGGGGHHHHHHHHHTTS
T ss_pred CcccHHHHHHHHhccCCcCC-ceEecCCCCEEEeeCccCCcCCCchHHHHHHHHHHHHhCC
Confidence 35799999999999999975 579986 5799992 234778999998875
No 35
>2irf_G IRF-2, interferon regulatory factor 2; transcription factor, IFN induction, IRF family, gene regulation/DNA complex; HET: DNA 5IU; 2.20A {Mus musculus} SCOP: a.4.5.23 PDB: 1irf_A 1irg_A 1if1_A*
Probab=21.54 E-value=72 Score=24.80 Aligned_cols=48 Identities=19% Similarity=0.459 Sum_probs=37.4
Q ss_pred CcchhHHHHHHhhCCCCCCCceeeecC-CceEEEc-----------C-hHHHHHHHhhhcCC
Q psy8490 130 GPIQLWQFLLELLTDKTCQAFISWTGD-GWEFKLT-----------D-PDEVARRWGIRKNK 178 (228)
Q Consensus 130 G~i~LWqFLl~LL~d~~~~~~I~Wtg~-~geFrlv-----------d-pe~VArlWG~~Knk 178 (228)
...+|-.+|++-++...+.+ +.|+|+ ...|+|= + ...+-+.|..++++
T Consensus 4 ~r~rlrpWL~~qi~sg~ypG-L~W~d~~kt~FrIPWkHa~r~~~~~e~D~~IFkaWA~~~Gk 64 (113)
T 2irf_G 4 ERMRMRPWLEEQINSNTIPG-LKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 64 (113)
T ss_dssp -CCCHHHHHHHHHHTTCSTT-CEEEETTTTEEEEECCCTTSTTCCHHHHSHHHHHHHHHTTS
T ss_pred cccchHHHHHHHhccCCCCC-ceEEcCCCCEEEEeeeeCCcCCccccchhHHHHHHHHHhCC
Confidence 45689999999999999975 579986 6899991 1 23678899988865
Done!