RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8490
(228 letters)
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Length = 98
Score = 100 bits (249), Expect = 1e-27
Identities = 48/81 (59%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
GSG IQLWQFLLELL+D + I+W G EFK+TDPDEVARRWG RK+KP MNY+KLS
Sbjct: 2 GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61
Query: 188 RGLRRKTGYEKASRFEKVARR 208
R LR Y + KV +
Sbjct: 62 RALRY---YYDKNIMTKVHGK 79
>1awc_A Protein (GA binding protein alpha); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: a.4.5.21
Length = 110
Score = 99.1 bits (246), Expect = 6e-27
Identities = 46/77 (59%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 132 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
IQLWQFLLELLTDK + ISW GD EFKL P+ VA++WG RKNKP MNYEKLSR LR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 192 RKTGYEKASRFEKVARR 208
Y KV +
Sbjct: 61 Y---YYDGDMICKVQGK 74
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged
helix-turn-helix, DNA-binding specificity,
transcription/DNA complex; HET: DNA; 1.93A {Homo
sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Length = 93
Score = 97.8 bits (243), Expect = 1e-26
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 130 GPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 189
I LWQFLL+LL + I WT + +FKL +EVAR WGIRKNKP MNY+KLSR
Sbjct: 3 SAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRA 62
Query: 190 LRRKTGYEKASRFEKVARR 208
LR Y + +KV +
Sbjct: 63 LRY---YYVKNIIKKVNGQ 78
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA
complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Length = 171
Score = 99 bits (248), Expect = 1e-26
Identities = 68/134 (50%), Positives = 82/134 (61%), Gaps = 6/134 (4%)
Query: 76 PPAWPSPDVQFLPTGR-GEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQL 134
P++ S D + P P + + + + + +TGSGPIQL
Sbjct: 10 VPSYDSFDSEDYPAALPNHKPKGTFKDYVRDRADL--NKDKPVIPAAALAGYTGSGPIQL 67
Query: 135 WQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKT 194
WQFLLELLTDK+ Q+FISWTGDGWEFKL+DPDEVARRWG RKNKPKMNYEKLSRGLR
Sbjct: 68 WQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRY-- 125
Query: 195 GYEKASRFEKVARR 208
Y + K A +
Sbjct: 126 -YYDKNIIHKTAGK 138
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain;
1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A
1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Length = 146
Score = 97.2 bits (241), Expect = 7e-26
Identities = 67/109 (61%), Positives = 77/109 (70%), Gaps = 8/109 (7%)
Query: 105 SKPPYVQPASMLAGYS-----GSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWE 159
+ YV+ + L + +TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWE
Sbjct: 8 TFKDYVRDRADLNKDKPVIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWE 67
Query: 160 FKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARR 208
FKL+DPDEVARRWG RKNKPKMNYEKLSRGLR Y + K A +
Sbjct: 68 FKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRY---YYDKNIIHKTAGK 113
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA
complex, double helix, transcription/DNA complex; 2.00A
{Homo sapiens} SCOP: a.4.5.21
Length = 97
Score = 94.7 bits (235), Expect = 2e-25
Identities = 39/81 (48%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 127 TGSGPIQLWQFLLELLTDK-TCQAFISWT-GDGWEFKLTDPDEVARRWGIRKNKPKMNYE 184
GS PI LWQFL ELL + FI W + FK+ D +VAR WGIRKN+P MNY+
Sbjct: 6 LGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYD 65
Query: 185 KLSRGLRRKTGYEKASRFEKV 205
KLSR +R+ Y K K
Sbjct: 66 KLSRSIRQ---YYKKGIIRKP 83
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Length = 128
Score = 95.6 bits (237), Expect = 2e-25
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 186
GS LW ++ +LL+D + FI W + F++ DP+ +AR WG KN+ M YEK+
Sbjct: 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 60
Query: 187 SRGLRRKTGYEKASRFEKVARR 208
SR LR Y K + K +
Sbjct: 61 SRALRH---YYKLNIIRKEPGQ 79
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex;
3.15A {Homo sapiens} SCOP: a.4.5.21
Length = 157
Score = 96.8 bits (240), Expect = 2e-25
Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
I LWQFLL+LL + I WT + +FKL +EVAR WGIRKNKP MNY+KLS
Sbjct: 2 SDSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLS 61
Query: 188 RGLRRKTGYEKASRFEKVARR 208
R LR Y + +KV +
Sbjct: 62 RALRY---YYVKNIIKKVNGQ 79
>4avp_A ETS translocation variant 1; transcription, transcriptional
activation and repression, DN binding protein, E
twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens}
Length = 106
Score = 93.7 bits (232), Expect = 6e-25
Identities = 47/86 (54%), Positives = 58/86 (67%), Gaps = 3/86 (3%)
Query: 123 GPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMN 182
GP G +QLWQFL+ LL D + FI+WTG G EFKL +P+EVARRWGI+KN+P MN
Sbjct: 3 GPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMN 62
Query: 183 YEKLSRGLRRKTGYEKASRFEKVARR 208
Y+KLSR LR Y + +KVA
Sbjct: 63 YDKLSRSLRY---YYEKGIMQKVAGE 85
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 93.3 bits (231), Expect = 1e-24
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKL 186
SG LW ++ +LL+D + FI W + F++ DP+ +AR WG KN+ M YEK+
Sbjct: 5 SSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKM 64
Query: 187 SRGLRRKTGYEKASRFEKVARR 208
SR LR Y K + K +
Sbjct: 65 SRALRH---YYKLNIIRKEPGQ 83
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation
and repression, structural genomics; NMR {Homo sapiens}
SCOP: a.4.5.21
Length = 107
Score = 92.8 bits (230), Expect = 1e-24
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 128 GSGPIQLWQFLLELLTDK-TCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEK 185
SG LW+F+ +LL + W + F++ + +A+ WG RK +M YEK
Sbjct: 5 SSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEK 64
Query: 186 LSRGLRRKTGYEKASRFEKVARR 208
LSR LR Y K E+V RR
Sbjct: 65 LSRALRY---YYKTGILERVDRR 84
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex
(transcription regulating/DNA), oncogene, transforming
protein, DNA- binding, activator; HET: DNA; 2.10A {Mus
musculus} SCOP: a.4.5.21
Length = 89
Score = 89.7 bits (222), Expect = 1e-23
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 132 IQLWQFLLELLTDKTCQAFISWTGDG---WEFKLTDPDEVARRWGIRK-NKPKMNYEKLS 187
I+L+QFLL+LL + I W ++F + +A RWGI+K N+ KM YEK++
Sbjct: 2 IRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMA 61
Query: 188 RGLRRKTGYEKASRFEKVARR 208
R LR Y K +KV ++
Sbjct: 62 RALRN---YGKTGEVKKVKKK 79
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex,
type II TGF-beta receptor, activa alternative splicing,
cytoplasm; HET: DNA; 2.20A {Mus musculus}
Length = 103
Score = 87.0 bits (215), Expect = 2e-22
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 132 IQLWQFLLELLTDK-TCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRG 189
LW+F+ ++L + + W FK + VA+ WG +K M YEKLSR
Sbjct: 5 THLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRA 64
Query: 190 LRRKTGYEKASRFEKVARR 208
+R Y K E+V R
Sbjct: 65 MRY---YYKREILERVDGR 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 8e-04
Identities = 38/200 (19%), Positives = 60/200 (30%), Gaps = 75/200 (37%)
Query: 16 IG-RAYRSY--KSIPLD---------------MELSVK----YQVPSQ-----AELPT-- 46
IG R Y +Y S+P M LS+ QV + LP
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 47 ------MNSPYDN---TG------GFQTVPNGTAAPTGPSEAGGPPAW--PSPDVQFLPT 89
+N N +G G AP+G ++ P + +FLP
Sbjct: 365 QVEISLVNGA-KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 90 GRGEAPSYYYSSFSDSKPPYVQPASMLAG---------YSGSG---PCF---TGSGPIQL 134
+P ++S + PAS L ++ P + GS L
Sbjct: 424 A---SP--FHS-------HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 135 WQFLLELLTDKTCQAFISWT 154
+ E + D + + W
Sbjct: 472 SGSISERIVDCIIRLPVKWE 491
Score = 30.8 bits (69), Expect = 0.49
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 44/119 (36%)
Query: 96 SYYYSSFSDSKPPYVQPASML--AGYSGSGPCFT---GSGPIQLW--------------- 135
+Y + +P + S L A G+ G G +
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 136 --------QFLLELLTDKT-CQAFISWTGD--GWEFKLTDPDEVARRWGIRKNKPKMNY 183
+ L EL+ + + + W L +P N P +Y
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW---LENPS----------NTPDKDY 230
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 36.0 bits (82), Expect = 0.008
Identities = 14/89 (15%), Positives = 26/89 (29%)
Query: 36 YQVPSQAELPTMNSPYDNTGGFQTVPNGTAAPTGPSEAGGPPAWPSPDVQFLPTGRGEAP 95
Q P+Q P + + G +P A P+ + PA Q
Sbjct: 23 LQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMND 82
Query: 96 SYYYSSFSDSKPPYVQPASMLAGYSGSGP 124
+ ++ Y+QP + +
Sbjct: 83 MHLHNVPLVDPNAYMQPQVPVQMGTPLQQ 111
Score = 29.4 bits (65), Expect = 1.0
Identities = 10/95 (10%), Positives = 15/95 (15%)
Query: 39 PSQAELPTMNSPYDNTGGFQTVPNGTAAPTGPSEAGGPPAWPSPDVQFLPTGRGEAPSYY 98
P N+ P AA G P + A
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69
Query: 99 YSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQ 133
+ + P+Q
Sbjct: 70 HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQ 104
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 35.1 bits (80), Expect = 0.017
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 45 PTMNSPYDNTGGFQTVPNGTAAPTGPSEAGGPPAWPSPDVQFLPTGRGEAPSYYYSSFSD 104
M SP ++G + G A G + + FS
Sbjct: 1489 ELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYG----EAPTSPGFGVSSPGFSP 1544
Query: 105 SKPPYVQPASMLAGYSGSGPCFTGSGP 131
+ P Y P S YS + P ++ + P
Sbjct: 1545 TSPTYS-PTSP--AYSPTSPSYSPTSP 1568
Score = 33.9 bits (77), Expect = 0.039
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Query: 33 SVKYQVPSQAELPTMNSPYDNTGGFQTVPNGTAAPTGPSEAGGPPAWPSPDVQFLPTGRG 92
S Y S + PT S + + +PT PS + PA+ + PT
Sbjct: 1616 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPAYSPTSPSYSPTSPS 1674
Query: 93 EAPS----YYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGP 131
+P+ S P P S YS + P ++ P
Sbjct: 1675 YSPTSPSYSPTSPSYSPTSPNYSPTS--PSYSPTSPGYSPGSP 1715
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 34.3 bits (78), Expect = 0.029
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 47 MNSPYDNTGGFQTVPNGTAAPTGPSEAGGP---PAWPSPDVQFLPTGRG-EAPSYYYSSF 102
SP G G G + P + SP + G G +PSY SS
Sbjct: 1504 AFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSP 1563
Query: 103 SDSKPPYVQPASMLAGYSGSGPCFTGSGP 131
S P P+S YS + P ++ + P
Sbjct: 1564 GYSTSPAYMPSS--PSYSPTSPSYSPTSP 1590
>3hts_B Heat shock transcription factor; transcription regulation,
DNA-binding protein, complex (WING helix_TURN_
helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22
PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A
1fbq_A
Length = 102
Score = 29.0 bits (65), Expect = 0.42
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 138 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVAR 170
L ++ DK+ + FI W+ G + + + +
Sbjct: 19 LWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQ 51
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein;
periplasmic
N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin
protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Length = 302
Score = 30.0 bits (68), Expect = 0.56
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 146 TCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKV 205
AF G+E+ + +PDE + N+ + N+ + + E
Sbjct: 206 VLAAFWRAALKGYEWMVENPDEALNV--LLTNQDEANFPLIQEVEEESLSIL-LEKMENP 262
Query: 206 ARRWG 210
+G
Sbjct: 263 NGPFG 267
>2ldu_A Heat shock factor protein 1; structural genomics, northeast
structural genomics consortiu DNA-binding, PSI-biology,
protein structure initiative; NMR {Homo sapiens}
Length = 125
Score = 28.9 bits (65), Expect = 0.63
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 138 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVARR 171
L L++D A I W+ G F + D + A+
Sbjct: 24 LWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKE 57
>1hks_A Heat-shock transcription factor; transcription regulation; NMR
{Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Length = 106
Score = 28.4 bits (64), Expect = 0.69
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 138 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVAR 170
L L+ D I WT DG F + + + A+
Sbjct: 11 LWRLVDDADTNRLICWTKDGQSFVIQNQAQFAK 43
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 29.0 bits (65), Expect = 0.87
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 70 PSEAGGPPAW-----PSPDVQFLPTG 90
P E GP P P+V+F+PTG
Sbjct: 132 PGEVVGPQFVKAMKGPFPNVKFVPTG 157
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.7
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
Query: 9 LESRLKNIGRAYRSYKSIPLDMELSVKYQV 38
L++ LK Y S P L++K +
Sbjct: 25 LQASLK----LYAD-DSAP---ALAIKATM 46
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural
genomics, PSI-2 structure initiative; 1.60A {Pseudomonas
syringae PV} SCOP: d.369.1.1
Length = 135
Score = 26.6 bits (58), Expect = 4.2
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 125 CFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGW 158
C G + LW EL+T+++ ++ W D W
Sbjct: 99 CVEEDGTVLLWSAEEELVTEESWESVWHWARDVW 132
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Chromobacterium violaceum}
Length = 407
Score = 27.4 bits (59), Expect = 5.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 38 VPSQAELPTMNSPYDNTGGFQTVPNGTAAP 67
+ +QA P ++P + G + P G+AAP
Sbjct: 18 LETQAAAPQSDAPDASAGQTRAAPQGSAAP 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 27.2 bits (59), Expect = 6.3
Identities = 19/93 (20%), Positives = 24/93 (25%), Gaps = 7/93 (7%)
Query: 45 PTMNSPYDNTGGFQTVPNGTAAP-------TGPSEAGGPPAWPSPDVQFLPTGRGEAPSY 97
N TGG T G++ P +G S G + TG S
Sbjct: 287 GNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRPGSTGTWNPGSS 346
Query: 98 YYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSG 130
S S +S SG S
Sbjct: 347 ERGSAGHWTSESSVSGSTGQWHSESGSFRPDSP 379
>1eys_H Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Length = 259
Score = 26.4 bits (58), Expect = 6.9
Identities = 14/64 (21%), Positives = 16/64 (25%), Gaps = 3/64 (4%)
Query: 56 GFQTVPNGTAAPTGPSEAGGPPAWPSPDVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASM 115
G+ N T G + G P P P LP G P S
Sbjct: 38 GYPLDSNRTERSGGRYKVVGFPDLPDPKTFVLPHNGGT---VVAPRVEAPVAVNATPFSP 94
Query: 116 LAGY 119
G
Sbjct: 95 APGS 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.420
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,599,308
Number of extensions: 213261
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 53
Length of query: 228
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,188,903
Effective search space: 578068614
Effective search space used: 578068614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.5 bits)