RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8490
(228 letters)
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 117 bits (295), Expect = 3e-34
Identities = 72/109 (66%), Positives = 80/109 (73%), Gaps = 12/109 (11%)
Query: 100 SSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGWE 159
+ + KP PA+ LAGY TGSGPIQLWQFLLELLTDK+CQ+FISWTGDGWE
Sbjct: 17 ADLNKDKPVI--PAAALAGY-------TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWE 67
Query: 160 FKLTDPDEVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRFEKVARR 208
FKL+DPDEVARRWG RKNKPKMNYEKLSRGLR Y + K A +
Sbjct: 68 FKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRY---YYDKNIIHKTAGK 113
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 109 bits (275), Expect = 8e-32
Identities = 48/81 (59%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
GSG IQLWQFLLELL+D + I+W G EFK+TDPDEVARRWG RK+KP MNY+KLS
Sbjct: 2 GSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLS 61
Query: 188 RGLRRKTGYEKASRFEKVARR 208
R LR Y + KV +
Sbjct: 62 RALRY---YYDKNIMTKVHGK 79
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 110
Score = 109 bits (274), Expect = 2e-31
Identities = 46/77 (59%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 132 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
IQLWQFLLELLTDK + ISW GD EFKL P+ VA++WG RKNKP MNYEKLSR LR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 192 RKTGYEKASRFEKVARR 208
Y KV +
Sbjct: 61 Y---YYDGDMICKVQGK 74
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 107 bits (269), Expect = 4e-31
Identities = 41/78 (52%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 132 IQLWQFLLELLTDKTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGL 190
+ LWQFLL+LL ++ ISWT DG EFKL D +EVAR WG+RKNK MNY+KLSR L
Sbjct: 1 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 60
Query: 191 RRKTGYEKASRFEKVARR 208
R Y + KV+ +
Sbjct: 61 RY---YYDKNIIRKVSGQ 75
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 104 bits (261), Expect = 5e-29
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 132 IQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGLR 191
I LWQFLL+LL + I WT + +FKL +EVAR WGIRKNKP MNY+KLSR LR
Sbjct: 4 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 63
Query: 192 RKTGYEKASRFEKVARR 208
Y + +KV +
Sbjct: 64 Y---YYVKNIIKKVNGQ 77
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 102 bits (255), Expect = 6e-29
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 132 IQLWQFLLELLTDKTCQAFISWTGDG---WEFKLTDPDEVARRWGIRK-NKPKMNYEKLS 187
I+L+QFLL+LL + I W ++F + +A RWGI+K N+ KM YEK++
Sbjct: 2 IRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMA 61
Query: 188 RGLRRKTGYEKASRFEKVARR 208
R LR Y K +KV ++
Sbjct: 62 RALRN---YGKTGEVKKVKKK 79
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 99.9 bits (249), Expect = 5e-28
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 133 QLWQFLLELLTD-KTCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSRGL 190
LW+F+ +LL + + W + F++ + +A+ WG RK +M YEKLSR L
Sbjct: 3 HLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRAL 62
Query: 191 RRKTGYEKASRFEKVARR 208
R Y K E+V RR
Sbjct: 63 RY---YYKTGILERVDRR 77
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets
transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 98.7 bits (246), Expect = 1e-27
Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 131 PIQLWQFLLELLTDK-TCQAFISWTG-DGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSR 188
PI LWQFL ELL + FI W + FK+ D +VAR WGIRKN+P MNY+KLSR
Sbjct: 2 PIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSR 61
Query: 189 GLRRKTGYEKASRFEKV 205
+R+ Y K K
Sbjct: 62 SIRQ---YYKKGIIRKP 75
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast
(Kluyveromyces lactis) [TaxId: 28985]}
Length = 92
Score = 30.6 bits (69), Expect = 0.034
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 138 LLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLSR-----GLRR 192
L ++ DK+ + FI W+ G + + + + + K N+ R G +
Sbjct: 9 LWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHS-NFASFVRQLNMYGWHK 67
Query: 193 KTGYEKASRFEKVARRW 209
+ S RW
Sbjct: 68 VQDVKSGSMLSNNDSRW 84
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila
melanogaster [TaxId: 7227]}
Length = 106
Score = 29.9 bits (67), Expect = 0.080
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 128 GSGPIQLWQFLLELLTDKTCQAFISWTGDGWEFKLTDPDEVARRWGIRKNKPKMNYEKLS 187
GSG L L+ D I WT DG F + + + A+ K N
Sbjct: 1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKH-NNMASFI 59
Query: 188 RGLRR 192
R L
Sbjct: 60 RQLNM 64
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 329
Score = 26.2 bits (57), Expect = 3.6
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 93 EAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLWQFLLELLTDKTCQAFIS 152
+ + YY+ K + G C TG G W + L + I
Sbjct: 84 GSTTSYYAVAVVKKGTEFT----VNDLQGKTSCHTGLGRSAGWNIPIGTLLHRG---AIE 136
Query: 153 WTGD 156
W G
Sbjct: 137 WEGI 140
>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein
(SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}
Length = 197
Score = 25.3 bits (55), Expect = 5.5
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 167 EVARRWGIRKNKPKMNYEKLSRGLRRKTGYEKASRF-EKVARRWGIRKNKPKMNYEKLSR 225
R WG R ++ + + G E F +V RR GI K +P YE R
Sbjct: 143 TTQRDWGNRTDRKNAKTKYTL----ERVGVET---FKAEVERRAGI-KFEPIRPYEFTGR 194
Query: 226 GLR 228
G R
Sbjct: 195 GDR 197
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 135
Score = 24.8 bits (54), Expect = 5.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 125 CFTGSGPIQLWQFLLELLTDKTCQAFISWTGDGW 158
C G + LW EL+T+++ ++ W D W
Sbjct: 99 CVEEDGTVLLWSAEEELVTEESWESVWHWARDVW 132
>d2brja1 b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Thale cress
(Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]}
Length = 174
Score = 25.2 bits (55), Expect = 6.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 70 PSEAGGPPAWPSPDVQFLPTGRGEAPSYYYSSFSD 104
P E G P PS D++ P + PS S++++
Sbjct: 140 PLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 174
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain
(domain II) {Human (Homo sapiens), calpain 9 [TaxId:
9606]}
Length = 310
Score = 25.2 bits (54), Expect = 8.2
Identities = 12/65 (18%), Positives = 20/65 (30%)
Query: 76 PPAWPSPDVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGPIQLW 135
A Q G G A +++ + S+ V L + + + W
Sbjct: 83 QKALARVIPQDQSFGPGYAGIFHFQFWQHSEWLDVVIDDRLPTFRDRLVFLHSADHNEFW 142
Query: 136 QFLLE 140
LLE
Sbjct: 143 SALLE 147
>d1i5pa2 b.77.2.1 (A:264-472) delta-Endotoxin (insectocide), middle
domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA
[TaxId: 29339]}
Length = 209
Score = 24.9 bits (54), Expect = 8.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 120 SGSGPCFTGSGPIQLWQFLLELLTDKT 146
SGSGP T S Q W FL L +
Sbjct: 15 SGSGPQQTQSFTAQNWPFLYSLFQVNS 41
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 23.9 bits (52), Expect = 9.5
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 19/68 (27%)
Query: 83 DVQFLPTGRGEAPSYYYSSFSDSKPPYVQPASMLAGYSGSGPCFTGSGP---IQLWQFLL 139
D +P GE S+ S+ S CF + I+ FL
Sbjct: 31 DSIQIPRQLGEVASFGGSNIEPS----------------VRSCFQFANNKPEIEAALFLD 74
Query: 140 ELLTDKTC 147
+ +
Sbjct: 75 WMRLEPQS 82
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 24.4 bits (53), Expect = 9.9
Identities = 10/27 (37%), Positives = 10/27 (37%)
Query: 58 QTVPNGTAAPTGPSEAGGPPAWPSPDV 84
P T A A P A PS DV
Sbjct: 23 AQAPATTGAAGTAPTAPQPTAAPSIDV 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.420
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 903,062
Number of extensions: 44362
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 29
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)