BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8491
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 46 VCSSPCINGA-CVFPEQCHCSPGFQFVN--ETYCEPYCENCQHGTCTAPSVCECESGFVH 102
+C+ C+NG CV P C C PGF VN + C C N GTC P C C G
Sbjct: 182 LCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFN--GGTCFYPGKCICPPGL-- 237
Query: 103 NNETNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGYTLNP 162
E CE I + P+P N + +KC CS+G C
Sbjct: 238 --EGEQCE-ISKCPQP--------CRNGGKCIGKSKCKCSKGYQGDLC------------ 274
Query: 163 RTLYCEPECFNCTRGYCLEPNECSCPYNFH 192
CEP C G C EPN+C C +H
Sbjct: 275 SKPVCEPGCG--AHGTCHEPNKCQCQEGWH 302
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 20/108 (18%)
Query: 47 CSSPCINGA-CVFPEQCHCSPGFQFVN--ETYCEPYCENCQHGTCTAPSVCECESGFVHN 103
CS+ C NG C +P +C C PG + + C C N G C S C+C G+
Sbjct: 215 CSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRN--GGKCIGKSKCKCSKGY--- 269
Query: 104 NETNACERICEEPKPPLYPGLGTIPNTERTCLD-NKCHCSEGDSNPYC 150
+ + C KP PG G TC + NKC C EG +C
Sbjct: 270 -QGDLCS------KPVCEPGCGA----HGTCHEPNKCQCQEGWHGRHC 306
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 47 CSSPCINGACVFPEQCHCSPGFQ--FVNETYCEPYCENCQHGTCTAPSVCECESGFV 101
CS C NG C +C CSPG++ F CEP C + G C P+ C C+ G++
Sbjct: 395 CSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHG--GVCVRPNKCLCKKGYL 449
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 47 CSSPCINGACVFPEQCHCSPGFQ--FVNETYCEPYCENCQHGTCTAPSVCECESGFV 101
CS C NG C +C CSPG++ F CEP C + G C P+ C C+ G++
Sbjct: 395 CSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHG--GVCVRPNKCLCKKGYL 449
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 47 CSSPCINGACVFPEQCHCSPGFQ--FVNETYCEPYCENCQHGTCTAPSVCECESGFV 101
CS C NG C +C CSPG++ F CEP C + G C P+ C C+ G++
Sbjct: 395 CSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHG--GVCVRPNKCLCKKGYL 449
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 47 CSSPCINGACVFPEQCHCSPGFQ--FVNETYCEPYCENCQHGTCTAPSVCECESGFV 101
CS C NG C +C CSPG++ F CEP C + G C P+ C C+ G++
Sbjct: 416 CSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHG--GVCVRPNKCLCKKGYL 470
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 47 CSSPCINGACVFPEQCHCSPGFQ--FVNETYCEPYCENCQHGTCTAPSVCECESGFV 101
CS C NG C +C CSPG++ F CEP C + G C P+ C C+ G++
Sbjct: 416 CSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHG--GVCVRPNKCLCKKGYL 470
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 39 NASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECES 98
N + C CS +G+C P C C G+Q + C P+ C HG C P C CE+
Sbjct: 64 NRAICRQGCSPK--HGSCKLPGDCRCQYGWQGLYCDKCIPH-PGCVHGICNEPWQCLCET 120
Query: 99 GFVHNNETNACER---ICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCII 152
N C++ C +P L G + ++ +C C EG S P C I
Sbjct: 121 ----NWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKY----QCSCPEGYSGPNCEI 169
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 61 QCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV-------CECESGFVHNNETNACERI 112
+C C GFQ V + CE E TC+ V C+CE GF + T AC+ +
Sbjct: 62 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 120
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 61 QCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV-------CECESGFVHNNETNACERI 112
+C C GFQ V + CE E TC+ V C+CE GF + T AC+ +
Sbjct: 22 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 80
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 61 QCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV-------CECESGFVHNNETNACERI 112
+C C GFQ V + CE E TC+ V C+CE GF + T AC+ +
Sbjct: 316 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 374
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 61 QCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV-------CECESGFVHNNETNACERI 112
+C C GFQ V + CE E TC+ V C+CE GF + T AC+ +
Sbjct: 334 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 392
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 39 NASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV----- 93
N C+ VC+ I C+ P+ GFQ V + CE E TC+ V
Sbjct: 8 NNGGCSHVCNDLKIGYECLCPD------GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 61
Query: 94 --CECESGFVHNNETNACERI 112
C+CE GF + T AC+ +
Sbjct: 62 YKCQCEEGFQLDPHTKACKAV 82
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 39 NASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV----- 93
N C+ VC+ I C+ P+ GFQ V + CE E TC+ V
Sbjct: 35 NNGGCSHVCNDLKIGYECLCPD------GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 88
Query: 94 --CECESGFVHNNETNACE 110
C+CE GF + T AC+
Sbjct: 89 YKCQCEEGFQLDPHTKACK 107
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 61 QCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV-------CECESGFVHNNETNACE 110
+C C GFQ V + CE E TC+ V C+CE GF + T AC+
Sbjct: 51 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 107
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 39 NASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV----- 93
N C+ VC+ I C+ P+ GFQ V + CE E TC+ V
Sbjct: 8 NNGGCSHVCNDLKIGYECLCPD------GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 61
Query: 94 --CECESGFVHNNETNACE 110
C+CE GF + T AC+
Sbjct: 62 YKCQCEEGFQLDPHTKACK 80
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 39 NASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV----- 93
N C+ VC+ I C+ P+ GFQ V + CE E TC+ V
Sbjct: 11 NNGGCSHVCNDLKIGYECLCPD------GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 64
Query: 94 --CECESGFVHNNETNACE 110
C+CE GF + T AC+
Sbjct: 65 YKCQCEEGFQLDPHTKACK 83
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 61 QCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV-------CECESGFVHNNETNACE 110
+C C GFQ V + CE E TC+ V C+CE GF + T AC+
Sbjct: 27 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 83
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 38 VNASYCAPVCSSPCINGACVFPEQCH-CSPGFQFVNETYCEPYCENCQHGTCTAP---SV 93
V+ + P+ C G + C CSPGF F E P C C T +P +
Sbjct: 254 VDGEWLVPIGQCLCQAGYEKVEDACQACSPGF-FKFEASESP-CLECPEHTLPSPEGATS 311
Query: 94 CECESGFVHNNETNACERICEEPKPPLY 121
CECE GF + A P P Y
Sbjct: 312 CECEEGFFRAPQDPASMPCTRPPSAPHY 339
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 38 VNASYCAPVCSSPCINGACVFPEQCH-CSPGFQFVNETYCEPYCENCQHGTCTAP---SV 93
V+ + P+ C G + C CSPGF F E P C C T +P +
Sbjct: 251 VDGEWLVPIGQCLCQAGYEKVEDACQACSPGF-FKFEASESP-CLECPEHTLPSPEGATS 308
Query: 94 CECESGFVHNNETNACERICEEPKPPLY 121
CECE GF + A P P Y
Sbjct: 309 CECEEGFFRAPQDPASXPCTRPPSAPHY 336
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,626,214
Number of Sequences: 62578
Number of extensions: 370507
Number of successful extensions: 979
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 144
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)