RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8491
         (273 letters)



>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
          Length = 1634

 Score = 32.2 bits (73), Expect = 0.38
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 38  VNASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECE 97
              +   PV ++P    AC  P    C   F+F  +  C   CE C    C A   C CE
Sbjct: 664 TAGAIITPVVANPENRTACEEP----CLRQFRF--QKLCNTICE-CGRQGCAAGEYCVCE 716

Query: 98  SGFVHNNETNA 108
           +    N     
Sbjct: 717 ACLKLNQYAYV 727


>gnl|CDD|225518 COG2971, COG2971, Predicted N-acetylglucosamine kinase
           [Carbohydrate transport and metabolism].
          Length = 301

 Score = 31.5 bits (72), Expect = 0.46
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 226 YD-LENQTDISRVDMARFNLDTYEVVRCIYNASVN 259
           +D     T ++   MA FNLD  ++V  IY A   
Sbjct: 169 FDGRREATPLTDAVMAEFNLDPEDLVAFIYKAGPG 203


>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 330

 Score = 29.0 bits (65), Expect = 2.4
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 103 NNETNACERICEEPKPPLYPGL-GTIPN-TERTCLDNKCHCSEGDSNPYCIIQCDVGYTL 160
             E+   E +   P  P    L   IP+        ++ +   G      + Q  +G  L
Sbjct: 237 TVESAPSEELVTMPHHPYTQALIRAIPDFGSALPHKSRLNTLPGAIPL--LEQLPIGCRL 294

Query: 161 NPRTLYCEPECFNCTRGYCLEPNECSCPYNFHLE 194
            PR  Y + EC    R    + +  +C +  ++E
Sbjct: 295 GPRCPYAQRECIETPRLTGAKNHLFACHFPLNME 328


>gnl|CDD|204499 pfam10489, RFPL3_antisense, Ret finger protein-like 3 antisense.
           This short transcript is purported to be the antisense
           protein of exon 2 of RFPL3 gene, however this was not
           confirmed. Since the RFPL3 (ret-finger protein-like 3)
           gene is expressed in testis the suggestion is that this
           may have a role in the antisense regulation of the RFPL
           genes. RFPL transcripts encode proteins with tripartite
           structure of RING finger, coiled-coil, and B30-2
           domains, which are characteristic of the RING-B30
           family. Each of these domains is thought to mediate
           protein-protein interactions by promoting homo- or
           heterodimerisation.
          Length = 124

 Score = 27.9 bits (61), Expect = 3.1
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 22/88 (25%)

Query: 135 LDNKCHCSEGDSN----------PYCIIQCDVGYTLNPRTLYCEPECFNCTRGYCLEPNE 184
           + N C C +GDS           PY   +   G T N  T           R Y +  N+
Sbjct: 1   MGNLCGCIQGDSKKPSKKRVKRKPYSTTKVTSGSTFNENT-----------RRYAVHTNQ 49

Query: 185 CSCPYNFHLEGGMCMIAEGF-HTLYSEL 211
           C  P+   ++  M    + F HT++S L
Sbjct: 50  CRRPHGSRVKKKMYPQEDDFHHTVFSNL 77


>gnl|CDD|152000 pfam11564, BpuJI_N, Restriction endonuclease BpuJI - N terminal.
           BpuJI is a restriction endonuclease which recognises the
           asymmetric sequence 5'-CCCGT and cuts at multiple sites
           in the surrounding area of the target sequence. This
           family of proteins is the N terminal domain of BpuJI
           which has DNA recognition functions. The recognition
           domain has two subdomains D1 and D2. The recognition of
           the target sequence occurs through major groove contacts
           of amino acids on the helix-turn-helix region and the
           N-terminal arm.
          Length = 294

 Score = 27.3 bits (60), Expect = 9.8
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 189 YNFHLEGGMCMIAEGFHTLYSELVDMYRKKVLFLSCQYDLENQTDISRVDMARFNLDTYE 248
           + F   GG             E+++     + F    Y LE   + S+ D     L   +
Sbjct: 113 FKFEFPGGHDKD--------DEIIEKCGAGIQFKPAPYILELFLEASQADEKNIQLSDDD 164

Query: 249 VVRCIYN 255
           +  CI+N
Sbjct: 165 IAHCIFN 171


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.138    0.467 

Gapped
Lambda     K      H
   0.267   0.0714    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,711,374
Number of extensions: 1086427
Number of successful extensions: 1010
Number of sequences better than 10.0: 1
Number of HSP's gapped: 996
Number of HSP's successfully gapped: 48
Length of query: 273
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 178
Effective length of database: 6,723,972
Effective search space: 1196867016
Effective search space used: 1196867016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.1 bits)