RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8491
(273 letters)
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 51.1 bits (122), Expect = 1e-07
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 45 PVCSSPCINGACVFPEQCHCSPGF--QFVNETYCEPYCENCQHGTCTAPSVCECESGFVH 102
CS C NG C +C CSPG+ F CEP C + G C P+ C C+ G++
Sbjct: 393 SECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRH--GGVCVRPNKCLCKKGYLG 450
Query: 103 NNETNACERI 112
CE++
Sbjct: 451 PQ----CEQV 456
Score = 38.4 bits (89), Expect = 0.002
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 108 ACERICEEPKPPLYPGLGTIPNTERTCLDNKC--HCSEGDSNPYCIIQCDVGYT-LNPRT 164
+I + +P + +T L ++C C G P C G+ RT
Sbjct: 365 KLYKIVDPKRPLMPEECRATVQPAQT-LTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRT 423
Query: 165 LYCEPECFNCTRGYCLEPNECSCPYNF 191
CEP C + G C+ PN+C C +
Sbjct: 424 AKCEPACRH--GGVCVRPNKCLCKKGY 448
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 47.9 bits (114), Expect = 1e-06
Identities = 46/153 (30%), Positives = 57/153 (37%), Gaps = 36/153 (23%)
Query: 45 PVCSSPCINGA-CVFPEQCHCSPGFQFVN--ETYCEPYCENCQHGTCTAPSVCECESGFV 101
+C+ C+NG CV P C C PGF VN + C C N GTC P C C G
Sbjct: 181 ALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFN--GGTCFYPGKCICPPGLE 238
Query: 102 HNN-ETNACERICEEPKPPLYPGLGTIPNTERTCLD-NKCHCSEGDSNPYCIIQCDVGYT 159
E + C + C C+ +KC CS+G C
Sbjct: 239 GEQCEISKCPQPC---------------RNGGKCIGKSKCKCSKGYQGDLCSKPV----- 278
Query: 160 LNPRTLYCEPECFNCTRGYCLEPNECSCPYNFH 192
CEP C G C EPN+C C +H
Sbjct: 279 -------CEPGCGA--HGTCHEPNKCQCQEGWH 302
Score = 42.5 bits (100), Expect = 7e-05
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 22/116 (18%)
Query: 45 PVCSSPCINGA-CVFPEQCHCSPGFQFVN--ETYCEPYCENCQHGTCTAPSVCECESGFV 101
CS+ C NG C +P +C C PG + + C C N G C S C+C G+
Sbjct: 213 ANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRN--GGKCIGKSKCKCSKGYQ 270
Query: 102 HNN-ETNACERICEEPKPPLYPGLGTIPNTERTCLD-NKCHCSEGDSNPYCIIQCD 155
+ CE C TC + NKC C EG +C + +
Sbjct: 271 GDLCSKPVCEPGCGA---------------HGTCHEPNKCQCQEGWHGRHCNKRYE 311
Score = 37.9 bits (88), Expect = 0.002
Identities = 31/157 (19%), Positives = 40/157 (25%), Gaps = 33/157 (21%)
Query: 39 NASYCAPVCSSPCINGACVFPEQCHCSPGFQFVN--ETYCEPYCENCQHGTCTAPSVCEC 96
A + + F + C C N G C +CEC
Sbjct: 112 KQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRN--GGFCNERRICEC 169
Query: 97 ESGFVHNNETNACERICEEPKPPLYPGLGTIPNTERTCLD-NKCHCSEGDSNPYCIIQCD 155
GF + CE+ P + G C+ C C G C
Sbjct: 170 PDGFHGPH----CEKALCTP-RCMNGG---------LCVTPGFCICPPGFYGVNCDKAN- 214
Query: 156 VGYTLNPRTLYCEPECFNCTRGYCLEPNECSCPYNFH 192
C CFN G C P +C CP
Sbjct: 215 -----------CSTTCFN--GGTCFYPGKCICPPGLE 238
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 44.5 bits (104), Expect = 2e-05
Identities = 41/216 (18%), Positives = 62/216 (28%), Gaps = 23/216 (10%)
Query: 11 YLLSVIQSTSMSQDLRQAVICRFDLKFVNASYCAPVCSSPCINGACVFPEQCHCSPGFQF 70
L + + S+ L L + C +C + +
Sbjct: 123 NELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERC 182
Query: 71 VNETYCEPYC-ENCQHGTCTAPSVC---ECESGFVHNNETNAC--------ERICEEPKP 118
++C+ C C+ CTA +C EC ++ C + C E P
Sbjct: 183 WTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCP 242
Query: 119 P-LYPGLGTIPNTERTCLDNKCHCSEGDS---------NPYCIIQCDVGYTLNPRTLYCE 168
P Y C D C N CI +C GYT+N L C
Sbjct: 243 PPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCT 302
Query: 169 PECFNCTRG-YCLEPNECSCPYNFHLEGGMCMIAEG 203
P C + + LE + E C + G
Sbjct: 303 PCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 38.5 bits (90), Expect = 7e-04
Identities = 27/148 (18%), Positives = 36/148 (24%), Gaps = 31/148 (20%)
Query: 47 CSSPCINGA-CVFPEQCHCSPGFQFVN-ETYCEPYCENCQHGTCTAPSVCECESGFV-HN 103
S + C + +C P + H C C G++
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPE 62
Query: 104 NETNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGYTLNPR 163
C + C P L C C G YC
Sbjct: 63 CNRAICRQGCS-------------PKHGSCKLPGDCRCQYGWQGLYCDK----------- 98
Query: 164 TLYCEPECFNCTRGYCLEPNECSCPYNF 191
C P C G C EP +C C N+
Sbjct: 99 ---CIPHP-GCVHGICNEPWQCLCETNW 122
Score = 28.5 bits (64), Expect = 1.6
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 12/65 (18%)
Query: 46 VCSSPCINGACVFPEQCHCSPGF------QFVNETYCEPYCENCQHGTCTAPSV----CE 95
+ C++G C P QC C + + +N C N GTC+ C
Sbjct: 100 IPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLN--GGTCSNTGPDKYQCS 157
Query: 96 CESGF 100
C G+
Sbjct: 158 CPEGY 162
Score = 28.5 bits (64), Expect = 1.8
Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 21/123 (17%)
Query: 45 PVCSSPCINGA--CVFPEQCHCSPGF--QFVNETYCEPYCENCQHGTCTAPSVCECESGF 100
G C C G+ N C C + +HG+C P C C+ G+
Sbjct: 33 FCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGC-SPKHGSCKLPGDCRCQYGW 91
Query: 101 VHNNETNACERICEEPKPPLYPGLGTIPNTERTCLD-NKCHCSEGDSNPYCIIQCDVGYT 159
C++ P +PG C + +C C C + T
Sbjct: 92 QGLY--------CDKCIP--HPGCV-----HGICNEPWQCLCETNWGGQLCDKDLNYCGT 136
Query: 160 LNP 162
P
Sbjct: 137 HQP 139
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 38.9 bits (90), Expect = 0.001
Identities = 26/138 (18%), Positives = 41/138 (29%), Gaps = 13/138 (9%)
Query: 56 CVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCT-APSVCECESGFVHNN-ETNACERIC 113
C C+ Q EP C +G T VC C G++ + E + +
Sbjct: 427 VQVTFDCDCACQAQ------AEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRP 480
Query: 114 EEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGYTLNPRTLYCEPECFN 173
+ + + CL +C C D C+ R Y C
Sbjct: 481 SQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVR--YKGEMCSG 538
Query: 174 CTRGYCLEPNECSCPYNF 191
G C +C C ++
Sbjct: 539 --HGQC-SCGDCLCDSDW 553
Score = 32.8 bits (74), Expect = 0.13
Identities = 26/181 (14%), Positives = 45/181 (24%), Gaps = 9/181 (4%)
Query: 12 LLSVIQSTSMSQDLRQAVICRFDLKFVNASYCAPVCSSPCINGACVFPEQCHCSPGFQFV 71
+L +I + + R + ++ S+ A ++ I G +
Sbjct: 340 VLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSI 399
Query: 72 NETYCEPYCENCQHGTCTAPSVCECESGFVHNNETNACERICEEPKPPLYPGLGTIPNTE 131
E + T + V + AC+ E G G
Sbjct: 400 EAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNG------ 453
Query: 132 RTCLDNKCHCSEGDSNPYCIIQCDVGYTLNPRTLYCEPECFNCT-RGYCLEPNECSCPYN 190
T C C G C + C+ RG C +C C +
Sbjct: 454 -TFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGEC-LCGQCVCHSS 511
Query: 191 F 191
Sbjct: 512 D 512
Score = 32.0 bits (72), Expect = 0.19
Identities = 25/155 (16%), Positives = 37/155 (23%), Gaps = 13/155 (8%)
Query: 43 CAPVCSSPCINGACVFPEQCHCSPGF--QFVNETYCEPYCENCQHGTCTAPSVCECESGF 100
C C C C + + N T C + C+ CEC G
Sbjct: 528 CVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC--GS 585
Query: 101 VHNNETNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGYTL 160
+ + CE+ P ++ C C + D Y
Sbjct: 586 CVCIQPGSYGDTCEKC-----PTCPDACTFKKEC----VECKKFDRGALHDENTCNRYCR 636
Query: 161 NPRTLYCEPECFNCTRGYCLEPNECSCPYNFHLEG 195
+ E + C NE C F
Sbjct: 637 DEIESVKELKDTGKDAVNCTYKNEDDCVVRFQYYE 671
Score = 32.0 bits (72), Expect = 0.23
Identities = 34/176 (19%), Positives = 48/176 (27%), Gaps = 30/176 (17%)
Query: 43 CAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCEN-------------CQHGTCT 89
PVCS G C+ QC C YCE HG C+
Sbjct: 491 GQPVCSQ---RGECL-CGQCVCHSSD---FGKITGKYCECDDFSCVRYKGEMCSGHGQCS 543
Query: 90 APSVCECESGFVHNNETNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSE-GDSNP 148
C C+S + C C G + + C C C + G
Sbjct: 544 CG-DCLCDSDWTGYY----CN--CTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGD 596
Query: 149 YCIIQCDVGYTLNPRTLYCEPECFNCTRGYCLEPNECSCPYNFHLEGGMCMIAEGF 204
C + E + F+ RG + N C+ +E + G
Sbjct: 597 TCEKCPTCPDACTFKKECVECKKFD--RGALHDENTCNRYCRDEIESVKELKDTGK 650
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 38.9 bits (90), Expect = 0.002
Identities = 27/155 (17%), Positives = 41/155 (26%), Gaps = 14/155 (9%)
Query: 51 CINGACVFPEQCHCSPGFQFVNETYCEPYCE-----------NCQHGTCTAPSVCECESG 99
+ GF + P CE C +C C++G
Sbjct: 394 TATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTG 453
Query: 100 FVHNN-ETNACERICEEPKPPLYPGLGTIPNTER-TCLDNKCHCSEGDSNPYCIIQCDVG 157
++ N E R +E + +I + C+ +C C D I
Sbjct: 454 YIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCE 513
Query: 158 YTLNPRTLYCEPECFNCTRGYCLEPNECSCPYNFH 192
Y C RG C +C C F
Sbjct: 514 CDTINCERYNGQVCGGPGRGLC-FCGKCRCHPGFE 547
Score = 35.8 bits (82), Expect = 0.012
Identities = 30/167 (17%), Positives = 45/167 (26%), Gaps = 31/167 (18%)
Query: 46 VCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFVHNNE 105
+C + + G ++ + C C E Y C G C C C GF E
Sbjct: 496 LCHTSDVPGKLIYGQYCECDT---INCERYNGQVCGGPGRGLCF-CGKCRCHPGF----E 547
Query: 106 TNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCII------------- 152
+AC+ CE + C N C C G P C
Sbjct: 548 GSACQ--CERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYIS 605
Query: 153 -----QCDVGYTLNPRTLYCEPECFNCTR---GYCLEPNECSCPYNF 191
+ + G + C + C E + C +
Sbjct: 606 CAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAY 652
Score = 32.8 bits (74), Expect = 0.12
Identities = 27/147 (18%), Positives = 36/147 (24%), Gaps = 31/147 (21%)
Query: 43 CAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQ-HGTCTAPSVCECESGFV 101
C C C C G+Q C C + +C + E G
Sbjct: 560 CLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCA--ECLKFEKGPF 617
Query: 102 HNNETNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGYTLN 161
N + AC + P C E DS C V YT
Sbjct: 618 GKNCSAACPGLQLSNNP-----------------VKGRTCKERDSE-----GCWVAYT-- 653
Query: 162 PRTLYCEPECFNCTRGYCLEPNECSCP 188
+ + + Y E EC
Sbjct: 654 ----LEQQDGMDRYLIYVDESRECVAG 676
Score = 31.2 bits (70), Expect = 0.42
Identities = 20/144 (13%), Positives = 33/144 (22%), Gaps = 9/144 (6%)
Query: 48 SSPCINGA-CVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFVHNNET 106
S C NG + C V T+ + + V
Sbjct: 361 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 420
Query: 107 NACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGYTLNPRTLY 166
CE C + ++ + + C C G C Q +
Sbjct: 421 PQCECRCRDQSRD-----RSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSC 475
Query: 167 CEPECFNC--TRGYCLEPNECSCP 188
+ G C+ +C C
Sbjct: 476 RKDNNSIICSGLGDCV-CGQCLCH 498
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 35.5 bits (81), Expect = 0.017
Identities = 30/173 (17%), Positives = 45/173 (26%), Gaps = 19/173 (10%)
Query: 31 CRFDLKFVNASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETY---CEPYCENCQ-HG 86
++ +A S G +F + + + C C C +G
Sbjct: 150 DILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNG 209
Query: 87 TCTAPS-VCECESGFVHNNETNACERICEE------PKPPLYPGLGTIPNTERTCLDNKC 139
C + C C GF+ CE+ CE K G C
Sbjct: 210 VCHEDTGECICPPGFMGRT----CEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGC 265
Query: 140 HCSEGDSNPYCIIQCDVGYTLNPRTLYCEPECFNCTRGYCLEPNECSCPYNFH 192
C+ G C C G+ C+ C C C C +
Sbjct: 266 SCATGWKGLQCNEACHPGFYGPD----CKLRCSCNNGEMCDRFQGCLCSPGWQ 314
Score = 29.7 bits (66), Expect = 1.0
Identities = 25/158 (15%), Positives = 42/158 (26%), Gaps = 27/158 (17%)
Query: 47 CSSPCINGACVFPE--QCHCSPGF------QFVNETYCEPYCE---NCQHG-TCTAPSVC 94
C + P+ C C+ G+ + + + P C+ +C +G C C
Sbjct: 248 GQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGC 307
Query: 95 ECESGFVHNNETNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQC 154
C G+ CE P L + + G NP C
Sbjct: 308 LCSPGWQGLQ--------CEREGIPRMTPKI-------VDLPDHIEVNSGKFNPICKASG 352
Query: 155 DVGYTLNPRTLYCEPECFNCTRGYCLEPNECSCPYNFH 192
T TL + + + + H
Sbjct: 353 WPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIH 390
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 34.7 bits (80), Expect = 0.021
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 11/87 (12%)
Query: 48 SSPCINGACVFPE----QCHCSPGFQFVN-----ETYCEPYCENCQHGTC--TAPSVCEC 96
S PC++ C CSPG++ N + CQH C C
Sbjct: 10 SQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSC 69
Query: 97 ESGFVHNNETNACERICEEPKPPLYPG 123
G+ + C + L
Sbjct: 70 AQGYRLGEDHKQCVPHDQCACGVLTSE 96
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 34.4 bits (78), Expect = 0.032
Identities = 27/132 (20%), Positives = 40/132 (30%), Gaps = 16/132 (12%)
Query: 47 CSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAP-------SVCECESG 99
CS C + + +C C GFQ V + CE E TC+ C+CE G
Sbjct: 10 CSHVCNDLKIGY--ECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEG 67
Query: 100 FVHNNETNACERICEEP-------KPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCII 152
F + T AC+ + L T + + I
Sbjct: 68 FQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIY 127
Query: 153 QCDVGYTLNPRT 164
D+ + T
Sbjct: 128 WSDLSQRMICST 139
Score = 29.4 bits (65), Expect = 1.2
Identities = 19/81 (23%), Positives = 23/81 (28%), Gaps = 22/81 (27%)
Query: 134 CLDNKCHCSEG----DSNPYCIIQCDVGYTLNPRTL-----------YCEPECFNCTRGY 178
CLDN CS C C G+ L + C C N GY
Sbjct: 3 CLDNNGGCSHVCNDLKIGYEC--LCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 179 CLEPNECSCPYNFHLEGGMCM 199
+C C F L+
Sbjct: 61 -----KCQCEEGFQLDPHTKA 76
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 33.1 bits (75), Expect = 0.088
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 47 CSSPCINGACVFPEQCHCSPGFQFV-NETYCEPYCENCQH 85
CS C+ QC C G + + N C+ + H
Sbjct: 277 CSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHHHH 316
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 32.5 bits (73), Expect = 0.13
Identities = 40/205 (19%), Positives = 57/205 (27%), Gaps = 23/205 (11%)
Query: 22 SQDLRQAVICRFDLKFVNASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYC- 80
S+ L L + C +C + + ++C+ C
Sbjct: 134 SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCP 193
Query: 81 ENCQHGTCTAPSVC---ECESGFVHNNETNACER--------ICEEPKPP-LYPGLGTIP 128
C+ CTA +C EC ++ C C E PP Y
Sbjct: 194 TICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRC 253
Query: 129 NTERTCLDNKCHCSEGDS---------NPYCIIQCDVGYTLNPRTLYCEPECFNCTRGYC 179
C D C N CI +C GYT+N L C P C +
Sbjct: 254 VNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCH 313
Query: 180 L-EPNECSCPYNFHLEGGMCMIAEG 203
L E + E C + G
Sbjct: 314 LLEGEKTIDSVTSAQELRGCTVING 338
Score = 28.3 bits (62), Expect = 3.0
Identities = 22/128 (17%), Positives = 30/128 (23%), Gaps = 4/128 (3%)
Query: 42 YCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVC--ECESG 99
Y C C F + + F C+ H + C EC SG
Sbjct: 232 YLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSG 291
Query: 100 FVHNNETNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGYT 159
+ N+ C P L T + + N II G
Sbjct: 292 YTMNSSNLLCT--PCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNN 349
Query: 160 LNPRTLYC 167
L
Sbjct: 350 LAAELEAN 357
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 32.5 bits (73), Expect = 0.13
Identities = 24/152 (15%), Positives = 36/152 (23%), Gaps = 19/152 (12%)
Query: 61 QCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFVHNNETNACERICEEPKPPL 120
+ ++ C + GT +CE + N C++ P
Sbjct: 129 LILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPST 188
Query: 121 YPGLGTIPNTERTCLDNKCHCSEGDS------------NPYCIIQCDVG-YTLNPRTLYC 167
N E + CS D+ C+ C Y
Sbjct: 189 CGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVD 248
Query: 168 EPECFNCTRGYCLEPNECSCPYNFHLEGGMCM 199
C N E S F + G CM
Sbjct: 249 RDFCANIL------SAESSDSEGFVIHDGECM 274
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 32.2 bits (72), Expect = 0.20
Identities = 28/147 (19%), Positives = 39/147 (26%), Gaps = 26/147 (17%)
Query: 43 CAPVCSSPCINGACVFPE-------QCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCE 95
CA C S I F + C Q C E C+ C+
Sbjct: 26 CASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQ------CSKCLEPCKESGDLRKHQCQ 79
Query: 96 CESGFVHNNETNACERICEEPKPPLYPGLGTIPNTER------TCLDNKCHCSEGDSNPY 149
+ ++ C CE K L G P E+ C+++ C S
Sbjct: 80 SFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVES-CEVDNECSGVK 138
Query: 150 ------CIIQCDVGYTLNPRTLYCEPE 170
C C V TL +
Sbjct: 139 KCCSNGCGHTCQVPKTLYKGVPLKPRK 165
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 31.0 bits (69), Expect = 0.24
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 47 CSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGF 100
G + + F+ + C C N G C +CEC GF
Sbjct: 123 VIVMNSEGNTI-LXTPQNAIFFKTCQQAECPGGCRN--GGFCNERRICECPDGF 173
Score = 30.3 bits (67), Expect = 0.52
Identities = 11/56 (19%), Positives = 15/56 (26%)
Query: 137 NKCHCSEGDSNPYCIIQCDVGYTLNPRTLYCEPECFNCTRGYCLEPNECSCPYNFH 192
+ +S I+ E G+C E C CP FH
Sbjct: 119 FEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFH 174
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response,
innate immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 32.1 bits (72), Expect = 0.25
Identities = 16/115 (13%), Positives = 28/115 (24%), Gaps = 5/115 (4%)
Query: 76 CEPYCENCQHGTCTAPSVCECESGFVHNNETNACERICEEPKPPLYPGLGTIPNTERTCL 135
C+P+ + S C S N ++ C +
Sbjct: 859 CDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHC--QAPDHFLFAKLKTQ 916
Query: 136 DNKCHCSEGDSNPYCIIQCDVGYTLNPRTLYCEPECFNCTRGYCLEPNECSCPYN 190
N G S +C Y P ++ C + + C P +
Sbjct: 917 TNASDFPIGTS---LKYECRPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPD 968
Score = 30.2 bits (67), Expect = 0.85
Identities = 23/163 (14%), Positives = 36/163 (22%), Gaps = 10/163 (6%)
Query: 31 CRFDLKFVNASYCAPVCSSPCINGACVFPEQCHCSPGFQF-----VNETYCEPYCENCQH 85
C + PVC V P H + C+P+ +
Sbjct: 359 CVLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTS 418
Query: 86 GTCTAPSVCECESGFVHNNETNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGD 145
S C S N ++ C + N G
Sbjct: 419 FDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHC--QAPDHFLFAKLKTQTNASDFPIGT 476
Query: 146 SNPYCIIQCDVGYTLNPRTLYCEPECFNCTRGYCLEPNECSCP 188
S +C Y P ++ C + + C P
Sbjct: 477 S---LKYECRPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTP 516
Score = 29.4 bits (65), Expect = 1.5
Identities = 21/147 (14%), Positives = 33/147 (22%), Gaps = 4/147 (2%)
Query: 43 CAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFVH 102
C +P + C+P+ + S C S
Sbjct: 1276 EHIFCPNPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDRGMTFNLIGESTIRCTSDPHG 1335
Query: 103 NNETNACERICEEPKPPLYPG-LGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGYTLN 161
N ++ CE + P T N G S +C GY
Sbjct: 1336 NGVWSSPAPRCELSVRAGHCKTPEQFPFASPTIPINDFEFPVGTS---LNYECRPGYFGK 1392
Query: 162 PRTLYCEPECFNCTRGYCLEPNECSCP 188
++ C + C P
Sbjct: 1393 MFSISCLENLVWSSVEDNCRRKSCGPP 1419
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 31.7 bits (71), Expect = 0.26
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 13/76 (17%)
Query: 134 CLDNKCHCSE----GDSNPYCIIQCDVGYTLNPRTLYC--EPECFN---CTRGYCLEPN- 183
C N C++ C C GY L C EC C++G
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQC--TCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGA 63
Query: 184 -ECSCPYNFHLEGGMC 198
+C C + L
Sbjct: 64 FQCWCEAGYELRPDRR 79
Score = 28.6 bits (63), Expect = 2.5
Identities = 22/135 (16%), Positives = 34/135 (25%), Gaps = 23/135 (17%)
Query: 71 VNETYCEPYCENCQHGTCTAPSVCECESGFVHNNETNACERICEEPKPPLYPGLGTIPNT 130
VN C C+ + C C +G+ R C++ G
Sbjct: 8 VNNGGCAQKCQMIRGAV-----QCTCHTGY----RLTEDGRTCQDVNECAEEG------- 51
Query: 131 ERTCLDNKCHCSEGDSNPYCIIQCDVGYTLNPRTLYCEPECFNCTRGYCLEPNECSCPYN 190
C C SEG C+ GY L P C+ + + +
Sbjct: 52 --YC-SQGCTNSEG----AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPH 104
Query: 191 FHLEGGMCMIAEGFH 205
+ E
Sbjct: 105 RSEYTLLLNNLENAI 119
Score = 27.0 bits (59), Expect = 7.2
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 47 CSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENC-QHGTCTAPSVCECESG 99
C+ C QC C G++ + C + G C C G
Sbjct: 13 CAQKCQMIRGAV--QCTCHTGYRLTEDGRTCQDVNECAEEGYC--SQGCTNSEG 62
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 30.0 bits (68), Expect = 0.45
Identities = 7/65 (10%), Positives = 11/65 (16%), Gaps = 2/65 (3%)
Query: 43 CAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFVH 102
C C +C + + C C G+
Sbjct: 41 CIETIKGTCWQTVIDG--RCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSR 98
Query: 103 NNETN 107
T
Sbjct: 99 IKGTQ 103
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 30.8 bits (68), Expect = 0.47
Identities = 9/75 (12%), Positives = 16/75 (21%)
Query: 42 YCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFV 101
Y + C S C C C G+ T + + +
Sbjct: 189 YISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKIT 248
Query: 102 HNNETNACERICEEP 116
C + +
Sbjct: 249 GGQVGTGCGTLNDGR 263
Score = 26.9 bits (58), Expect = 7.8
Identities = 21/147 (14%), Positives = 30/147 (20%), Gaps = 24/147 (16%)
Query: 56 CVFPEQCHCSPGFQFVNETYCEPYCEN--CQHGTCTAPSVCECESGFVHNNETNACERIC 113
+ + ++ Y C + HG C + VC C+ G+ T
Sbjct: 170 WIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCIS-GVCFCDLGYTAAQGTCVSNTPN 228
Query: 114 EEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGY----TLNPRTLYCEP 169
E + G C D L R P
Sbjct: 229 HSEMF---------DRFEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNGLGKREARTVP 279
Query: 170 --------ECFNCTRGYCLEPNECSCP 188
F G C P
Sbjct: 280 LDTRNIRLVQFYIQIGSKTSGITCIKP 306
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 30.1 bits (68), Expect = 0.78
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 48 SSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFVHNNETN 107
S P + C + N + +C G C +G V +N
Sbjct: 385 SEPEHGPSPGQDTFCQGKADGLYPNPRERSSF-YSCAAGR---LFQQSCPTGLVFSNSCK 440
Query: 108 AC 109
C
Sbjct: 441 CC 442
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 29.4 bits (65), Expect = 1.2
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 43 CAPVC-SSPCINGACVFP---EQCHCSPGFQFVNETYCEPYCENCQH-GTCTAPSVCECE 97
C P G+ + C P + C+ +CQ+ GTC C C
Sbjct: 329 CKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCP 388
Query: 98 SGF 100
+ +
Sbjct: 389 AAY 391
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 29.5 bits (65), Expect = 1.3
Identities = 15/154 (9%), Positives = 27/154 (17%), Gaps = 16/154 (10%)
Query: 47 CSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFVHNNET 106
C C E +C + +
Sbjct: 146 SDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPS 205
Query: 107 NACERICEEPKPPLYPGLGTIPNTERTCLDNKCH-CSEGDSNPYCIIQCDVGYTLNPRTL 165
+ C C ++ C C + C C NP T
Sbjct: 206 DCCHNQC--------------AAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTY 251
Query: 166 YCEPECFNCTRGYCLEPNECSCPYNFHLEGGMCM 199
+ + + + G C+
Sbjct: 252 QMDV-NPEGKYSFGATCVKKCPRNYVVTDHGSCV 284
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 29.1 bits (65), Expect = 1.5
Identities = 16/106 (15%), Positives = 24/106 (22%), Gaps = 7/106 (6%)
Query: 47 CSSPCIN-GACVFPEQC---HCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFVH 102
+ C N C F + + YCE E G
Sbjct: 60 VENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLD-EDSDRAIEGATA 118
Query: 103 NNETNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNP 148
+E G P E+ L++K +S
Sbjct: 119 TSEYQTFFNPATFGSGE--ADCGLRPLFEKKSLEDKTERELLESYI 162
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 28.0 bits (63), Expect = 2.9
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 189 YNF----------HLEGGMCMIAEGFHTLYSE-LVDMYRKKVLFLSCQYDL 228
Y+F + +I EG LY + L D+ KV F+ D
Sbjct: 88 YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV-FVDADADE 137
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 28.5 bits (62), Expect = 3.1
Identities = 29/218 (13%), Positives = 49/218 (22%), Gaps = 17/218 (7%)
Query: 50 PCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFVHNNETNAC 109
+ V + P V + C +C N C
Sbjct: 149 RDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCC 208
Query: 110 ERICEEPKPPLYPGLGTIPNTERTCLDNKCH-CSEGDSNPYCIIQCDVGYTLNPRTLYCE 168
C D C C + + C+ +C N T E
Sbjct: 209 HDEC--------------AGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLE 254
Query: 169 PECFNCTRGYCLEPNECSCPYNFHLEGGMCMIAEGFHTLYSELVDMYRKKVLFLSCQYDL 228
P SCP+NF ++ C+ A + + + + C
Sbjct: 255 PNPHTKY--QYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKAC 312
Query: 229 ENQTDISRVDMARFNLDTYEVVRCIYNASVNRTCETQC 266
E SR + V +++
Sbjct: 313 EGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLN 350
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 28.3 bits (62), Expect = 3.2
Identities = 21/144 (14%), Positives = 31/144 (21%), Gaps = 11/144 (7%)
Query: 47 CSSPCINGAC-VFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFVHNNE 105
S C C P + H +
Sbjct: 736 NSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSN----DYFT 791
Query: 106 TNACERICEE-PKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGYTLNPRT 164
+ AC+ + E+ L + L+ + SN C GY
Sbjct: 792 SPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESC--GYDTCYDW 849
Query: 165 LYCEPECFNCTRGYCLEPNECSCP 188
C C CL P +C
Sbjct: 850 EKCSASTSKCV---CLLPPQCFKG 870
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 27.3 bits (61), Expect = 3.7
Identities = 16/114 (14%), Positives = 24/114 (21%), Gaps = 24/114 (21%)
Query: 61 QCHCSPGFQFVNETY-----CEPYCENCQHGTCTAPS-VCECESGFVHNNETNACERICE 114
C C P F+ C C E G + + C
Sbjct: 25 ICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA 84
Query: 115 EPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGYTLNPRTLYCE 168
P + + + C G+ NP T+ E
Sbjct: 85 WGTPC----------------EMCPAVNTSEYKILC--PGGEGFRPNPITVILE 120
Score = 26.2 bits (58), Expect = 8.7
Identities = 12/78 (15%), Positives = 15/78 (19%), Gaps = 10/78 (12%)
Query: 43 CAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV--------C 94
C G + C + P+V C
Sbjct: 47 GNCYLDIRPRGDNGDT--ACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILC 104
Query: 95 ECESGFVHNNETNACERI 112
GF N T E I
Sbjct: 105 PGGEGFRPNPITVILEDI 122
>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1
Length = 128
Score = 27.1 bits (60), Expect = 3.8
Identities = 10/69 (14%), Positives = 15/69 (21%), Gaps = 9/69 (13%)
Query: 122 PGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVGYTLNPRTLYCEP------ECFNCT 175
+ G S +C Y P ++ C C
Sbjct: 7 QAPDHFLFAKLKTQTTASDFPIGTS---LKYECRPEYYGRPFSITCLDNLVWSSPKDVCK 63
Query: 176 RGYCLEPNE 184
R C P +
Sbjct: 64 RKSCKTPPD 72
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 27.8 bits (61), Expect = 5.1
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 61 QCHCSPGFQFV-NETYCEPYCENCQH 85
+C C + +E C + H
Sbjct: 602 RCSCPMHLVLLQDELSCGGTKHHHHH 627
>2p3f_N Anti-coagulant protein 5; factor XA, hydrolase; 3.10A {Ancylostoma
caninum}
Length = 78
Score = 25.6 bits (55), Expect = 6.0
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 72 NETYCEPYCENCQHGTCTAPSVCECESGFVHNNETNAC 109
NE E C+ C P C C+ GF + C
Sbjct: 27 NEEPPEEEDPICRSRGCLLPPACVCKDGFYRDTVIGDC 64
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 27.3 bits (61), Expect = 6.5
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 53 NGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGT 87
G+C + CH P +ET+ C++C HG
Sbjct: 12 MGSC---QSCHAKPIKVTDSETHENAQCKSC-HGE 42
>3o0d_A YALI0A20350P, triacylglycerol lipase; alpha/beta-hydrolase,
lipids binding, glycosylation, extracellular,
hydrolase; HET: NAG; 1.70A {Yarrowia lipolytica}
Length = 301
Score = 26.9 bits (59), Expect = 7.4
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 36 KFVNASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQ 84
+ N YC + C QC P + + E + +
Sbjct: 23 RLANIGYCVGPGTKIFKPFNC--GLQCAHFPNVELIEEFHDPRLIFDVS 69
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 27.3 bits (59), Expect = 7.4
Identities = 7/76 (9%), Positives = 13/76 (17%)
Query: 34 DLKFVNASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSV 93
++ Y C C C C + + E
Sbjct: 524 QTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPS 583
Query: 94 CECESGFVHNNETNAC 109
+ + C
Sbjct: 584 NQNWLTVSGGKLSTVC 599
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog;
HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP:
e.12.1.1
Length = 301
Score = 26.7 bits (58), Expect = 7.6
Identities = 17/114 (14%), Positives = 27/114 (23%), Gaps = 7/114 (6%)
Query: 42 YCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECESGFV 101
C + + V F ET N + + G
Sbjct: 98 DCTKLGTGAYNIPNDVTKLNLETDADFILAIETSGMFARLNAERFWDKHNCILVSLKGVP 157
Query: 102 HNNETNACERICEEPKPPLY-------PGLGTIPNTERTCLDNKCHCSEGDSNP 148
+R+ EE P+ G I T + H ++ S P
Sbjct: 158 ARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGSGKAIHLADKLSIP 211
>1uwc_A Feruloyl esterase A; hydrolase, serine esterase, xylan degradation;
HET: NAG FER; 1.08A {Aspergillus niger} SCOP: c.69.1.17
PDB: 1uza_A* 2hl6_A* 2ix9_A* 1usw_A* 2bjh_A*
Length = 261
Score = 26.8 bits (59), Expect = 8.3
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 188 PYNFHLEGGMCMIAEGFHTLYSELVDMYRKKVLFLSCQYD 227
P++ + C + G++ + + D V + QY
Sbjct: 84 PFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYP 123
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 27.0 bits (59), Expect = 9.1
Identities = 19/130 (14%), Positives = 34/130 (26%), Gaps = 11/130 (8%)
Query: 76 CEPYCENCQHGTCTAPSVCECESGFVHNNETNACERICEEPKPPLYPGLGTIPNTERTCL 135
C P E + S C S + +C+ + I N +
Sbjct: 536 CNPGPERGVEFSLIGESTIRCTSNDQERGTWSGPAPLCKLSLLAVQCSHVHIANGYK-IS 594
Query: 136 DNKCHCSEGDSNPYCIIQCDVGYTLN-PRTLYC------EPECFNCTRGYCLEPNECSCP 188
+ D+ +C G+TL + C +PE C + C +
Sbjct: 595 GKEAPYFYNDT---VTFKCYSGFTLKGSSQIRCKADNTWDPEIPVCEKETCQHVRQSLQE 651
Query: 189 YNFHLEGGMC 198
+
Sbjct: 652 LPAGSRVELV 661
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 26.7 bits (58), Expect = 9.6
Identities = 23/171 (13%), Positives = 43/171 (25%), Gaps = 23/171 (13%)
Query: 37 FVNASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPS---- 92
+V A+ + G VF E + +++ C+ H + +
Sbjct: 212 WVTATDIRVTLNRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDK 271
Query: 93 -VCECESGFVHNNETNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCI 151
+C C+ N CE+ P E C C+ Y
Sbjct: 272 LMCNCKH--------NTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFD 323
Query: 152 IQCDVGYTLNPRTLYCEP-----ECFNCTRGYCLEPN-----ECSCPYNFH 192
+ C +C C + N + ++ H
Sbjct: 324 PELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAAHHHHH 374
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.467
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,106,496
Number of extensions: 242286
Number of successful extensions: 2029
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1231
Number of HSP's successfully gapped: 455
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.8 bits)