RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8491
         (273 letters)



>d1a73a_ d.4.1.3 (A:) Intron-encoded homing endonuclease I-PpoI
           {Physarum polycephalum [TaxId: 5791]}
          Length = 162

 Score = 30.1 bits (67), Expect = 0.17
 Identities = 10/30 (33%), Positives = 11/30 (36%)

Query: 154 CDVGYTLNPRTLYCEPECFNCTRGYCLEPN 183
           C      NP  L  E    N  R +C  PN
Sbjct: 99  CHNTRCHNPLHLCWESLDDNKGRNWCPGPN 128


>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger,
           acid amylase [TaxId: 5061]}
          Length = 381

 Score = 28.1 bits (61), Expect = 1.2
 Identities = 13/165 (7%), Positives = 33/165 (20%), Gaps = 3/165 (1%)

Query: 38  VNASYCAPVCSSPCINGACVFPEQCHCSPGFQFVNETYCEPYCENCQHGTCTAPSVCECE 97
             A + +P+      + A       +       VN  +              A  +    
Sbjct: 57  FTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMY-LM 115

Query: 98  SGFVHNNETNACERICEEPKPPLYPGLGTIPNTERTCLDNKCHCSEGDSNPYCIIQCDVG 157
              V ++   A      +    ++    +       CL           + +        
Sbjct: 116 VDVVPDHMGYAGNG--NDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIVSL 173

Query: 158 YTLNPRTLYCEPECFNCTRGYCLEPNECSCPYNFHLEGGMCMIAE 202
             L+          ++         +      +  LE        
Sbjct: 174 PDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPG 218


>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac
           {Lactococcus lactis [TaxId: 1358]}
          Length = 104

 Score = 26.1 bits (58), Expect = 2.1
 Identities = 3/20 (15%), Positives = 9/20 (45%)

Query: 199 MIAEGFHTLYSELVDMYRKK 218
           M       +   L+++Y++ 
Sbjct: 84  MTTILLKDVIHHLIELYKRG 103


>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase
           (Pantoate-beta-alanine ligase, PanC) {Escherichia coli
           [TaxId: 562]}
          Length = 282

 Score = 27.1 bits (59), Expect = 2.1
 Identities = 14/183 (7%), Positives = 37/183 (20%), Gaps = 12/183 (6%)

Query: 69  QFVNETYCEPYCENCQHGTCTAPSVCECESGFVHNNETNACERICEEPKPPLYPGLGTIP 128
              +         +                   + +       +    +P  + G+ TI 
Sbjct: 75  LQEDCEKLNKRKVDLVFAPSVKEIYPNGTETHTYVDVPGLSTMLEGASRPGHFRGVSTIV 134

Query: 129 NTE-RTCLDNKCHCSEGDSNPYCIIQCDVGYTLNPRTLYCEPECFNCTRGYCLEPNECSC 187
           +        +     E D     +I+  +   +                G  L       
Sbjct: 135 SKLFNLVQPDIACFGEKDFQQLALIRK-MVADMGFDIEIVGVPIMRAKDGLALSS----- 188

Query: 188 PYNFHLEGGMCMIAEGFHTLYSELVDMYRKKVLFLSCQYDLENQTDISRVDMARFNLDTY 247
                  G +            +++     K+       D         ++   F  D  
Sbjct: 189 -----RNGYLTAEQRKIAPGLYKVLSSIADKLQAGERDLDEIITIAGQELNEKGFRADDI 243

Query: 248 EVV 250
           ++ 
Sbjct: 244 QIR 246


>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 50

 Score = 23.3 bits (50), Expect = 8.1
 Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 5/31 (16%)

Query: 43 CAPVCSSPCINGACVFPEQ-----CHCSPGF 68
          C       CI G C F        C C  G+
Sbjct: 8  CPKQYKHYCIKGRCRFVVAEQTPSCVCDEGY 38


>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
           63363]}
          Length = 372

 Score = 25.2 bits (54), Expect = 9.5
 Identities = 20/242 (8%), Positives = 54/242 (22%), Gaps = 23/242 (9%)

Query: 9   DEYLLSVIQSTSMSQDLRQAVICRFDLKFVNASYCAPVCSSPCINGACVFPEQCHCSPGF 68
           ++Y+ +++++       + A        + N    A    S    G+ V   +       
Sbjct: 62  EDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNV 121

Query: 69  QFVNETYCEPYCENCQHGTCTAPSVCECESGFVHNNETNACERICEEPKPPLYPGLGTIP 128
            F             +        +     G  +  +      +  +       G+    
Sbjct: 122 AFNPAGGM---HHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAF 178

Query: 129 NTERTCLDNKCHCSEGDSNP----YCIIQCDVGYTLNPRTLYCEPECFNCTRGYCLEPNE 184
                      H S   + P    +     +         +       +    + LE + 
Sbjct: 179 YDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSL 238

Query: 185 CSCPYNFHLE----------------GGMCMIAEGFHTLYSELVDMYRKKVLFLSCQYDL 228
                 F  E                    +    F   ++ + +++ + V      Y  
Sbjct: 239 EIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHP 298

Query: 229 EN 230
             
Sbjct: 299 YA 300


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.467 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,075,579
Number of extensions: 56322
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 160
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.0 bits)