BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8492
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|F Chain F, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K79|A Chain A, Ets-1(331-440)+ggaa Duplex
pdb|1K79|D Chain D, Ets-1(331-440)+ggaa Duplex
pdb|1K7A|A Chain A, Ets-1(331-440)+ggag Duplex
pdb|1K7A|D Chain D, Ets-1(331-440)+ggag Duplex
Length = 110
Score = 97.8 bits (242), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/57 (77%), Positives = 50/57 (87%), Gaps = 2/57 (3%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPD 484
P + K +R RYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM+D+KPD
Sbjct: 52 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKPD 108
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/57 (77%), Positives = 50/57 (87%), Gaps = 2/57 (3%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPD 484
P + K +R RYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM+D+KPD
Sbjct: 83 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKPD 139
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 50/57 (87%), Gaps = 2/57 (3%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPD 484
P + K +R RYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM+D+KPD
Sbjct: 104 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKPD 160
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 96.3 bits (238), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/60 (73%), Positives = 51/60 (85%), Gaps = 2/60 (3%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKD 487
P + K +R RYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM+D+KPD +
Sbjct: 87 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKPDADE 146
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 96.3 bits (238), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/57 (77%), Positives = 50/57 (87%), Gaps = 2/57 (3%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPD 484
P + K +R RYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM+D+KPD
Sbjct: 103 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKPD 159
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 96.3 bits (238), Expect = 4e-20, Method: Composition-based stats.
Identities = 44/60 (73%), Positives = 51/60 (85%), Gaps = 2/60 (3%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKD 487
P + K +R RYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM+D+KPD +
Sbjct: 103 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKPDADE 162
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 49/57 (85%), Gaps = 2/57 (3%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPD 484
P + K +R RYYYDKNIIHKTAGKRYVYRFV DLQ+LLGY+PEELHAM+D+KPD
Sbjct: 112 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLLGYTPEELHAMLDVKPD 168
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 93.6 bits (231), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/57 (75%), Positives = 49/57 (85%), Gaps = 2/57 (3%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPD 484
P + K +R RYYYDKNIIHKTAGKRYVYRFV DLQ+LLGY+PEELHAM+D+KPD
Sbjct: 82 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLLGYTPEELHAMLDVKPD 138
>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 110
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMV 479
P + K +R RYYYD ++I K GKR+VY+FVCDL+TL+GYS EL+ +V
Sbjct: 48 PTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLV 99
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25
Structures
pdb|2STW|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX,
Restrained Regularized Mean Structure
Length = 96
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/34 (73%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFV 461
P + K +R RYYYDKNIIHKTAGKRYVYRFV
Sbjct: 63 PKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFV 96
>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|C Chain C, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|D Chain D, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4B06|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1
Complexed With Dna
Length = 106
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLL 468
P + K +R RYYY+K I+ K AG+RYVY+FVCD + L
Sbjct: 59 PAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALF 99
>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
pdb|2YPR|B Chain B, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
Length = 102
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTL 467
PN+ K +R RYYYDKNI+ K GKRY YRF D Q L
Sbjct: 55 PNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRF--DFQGL 92
>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1
Length = 98
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRF 460
PN+ K +R RYYYDKNI+ K GKRY Y+F
Sbjct: 53 PNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKF 85
>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
pdb|1DUX|F Chain F, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
Length = 94
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Query: 431 NVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFV 461
N+ K +R RYYYDKNII K +G+++VY+FV
Sbjct: 54 NMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFV 86
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 157
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFV 461
PN+ K +R RYYY KNII K G+++VY+FV
Sbjct: 53 PNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKFV 86
>pdb|1BC7|C Chain C, Serum Response Factor Accessory Protein 1a (Sap-1)DNA
Complex
pdb|1BC8|C Chain C, Structures Of Sap-1 Bound To Dna Sequences From The E74
And C-Fos Promoters Provide Insights Into How Ets
Proteins Discriminate Between Related Dna Targets
pdb|1K6O|A Chain A, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 93
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFV 461
PN+ K +R RYYY KNII K G+++VY+FV
Sbjct: 52 PNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKFV 85
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 393 TSTVYDKVCLGRESNPQSSACKHVF-PRKHHVLRSPMYPNVCLSKFTRRYYYDK-NIIHK 450
TS+V++K+ S S +F P +H L+ P C+SKFTR + +++
Sbjct: 219 TSSVFEKL-----SKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 451 TAGKRYVYRFVCDLQTLLGY 470
+ +Y+ + D LL Y
Sbjct: 274 QENWKKIYKTLADTGALLVY 293
>pdb|3JTG|A Chain A, Crystal Structure Of Mouse Elf3 C-Terminal Dna-Binding
Domai Complex With Type Ii Tgf-Beta Receptor Promoter
Dna
Length = 103
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 431 NVCLSKFTR--RYYYDKNIIHKTAGKRYVYRF 460
N+ K +R RYYY + I+ + G+R VY+F
Sbjct: 55 NMTYEKLSRAMRYYYKREILERVDGRRLVYKF 86
>pdb|2LF8|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To R458
Length = 128
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 431 NVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFV 461
N+ K +R R+YY NII K G+R ++RF+
Sbjct: 54 NMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFM 86
>pdb|2DAO|A Chain A, Solution Structure Of Ets Domain Transcriptional Factor
Etv6 Protein
Length = 118
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 431 NVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFV 461
N+ K +R R+YY NII K G+R ++RF+
Sbjct: 58 NMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFM 90
>pdb|2LF7|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To Q436
Length = 106
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 431 NVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFV 461
N+ K +R R+YY NII K G+R ++RF+
Sbjct: 54 NMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFM 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,285,579
Number of Sequences: 62578
Number of extensions: 498888
Number of successful extensions: 1273
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1249
Number of HSP's gapped (non-prelim): 28
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)