Query psy8492
Match_columns 489
No_of_seqs 350 out of 1540
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:16:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kdg_A DNA mismatch repair pro 100.0 2.6E-38 8.9E-43 299.7 8.8 160 275-439 7-191 (197)
2 3ncv_A DNA mismatch repair pro 100.0 2.1E-37 7.2E-42 299.2 11.0 159 276-439 29-214 (220)
3 1x9z_A DNA mismatch repair pro 100.0 1.3E-30 4.3E-35 245.0 8.0 143 276-430 8-170 (188)
4 1gvj_A C-ETS-1 protein, P54; t 99.7 4.6E-19 1.6E-23 160.8 1.3 78 410-487 67-146 (146)
5 2nny_A C-ETS-1 protein, P54; p 99.7 1.6E-18 5.3E-23 160.6 1.9 78 410-487 92-171 (171)
6 3na3_A DNA mismatch repair pro 99.7 4.4E-17 1.5E-21 167.0 10.6 105 160-264 172-282 (348)
7 3h4l_A DNA mismatch repair pro 99.6 7.3E-16 2.5E-20 158.9 9.0 105 160-264 169-306 (367)
8 1h7s_A PMS1 protein homolog 2; 99.6 1.4E-15 4.8E-20 156.4 10.1 105 160-264 179-311 (365)
9 1awc_A Protein (GA binding pro 99.6 1.2E-16 4.1E-21 139.1 1.3 71 410-480 28-100 (110)
10 1b63_A MUTL; DNA mismatch repa 99.6 5.5E-15 1.9E-19 149.9 9.0 105 160-264 168-279 (333)
11 2lf8_A Transcription factor ET 99.3 4.9E-16 1.7E-20 138.1 0.0 72 410-481 33-106 (128)
12 2dao_A Transcription factor ET 99.5 2.1E-15 7.3E-20 132.7 0.9 71 410-480 37-109 (118)
13 4avp_A ETS translocation varia 99.5 2.7E-15 9.4E-20 130.1 -1.4 63 411-473 40-104 (106)
14 1bc8_C SAP-1, protein (SAP-1 E 99.3 5.8E-14 2E-18 119.2 -0.6 59 410-468 32-92 (93)
15 1hbx_G ETS-domain protein ELK- 99.3 1.4E-13 4.7E-18 125.9 0.9 70 410-480 33-104 (157)
16 3jtg_A ETS-related transcripti 99.2 8.3E-13 2.8E-17 114.1 0.4 64 410-476 34-99 (103)
17 1yo5_C SAM pointed domain cont 99.1 5.4E-12 1.9E-16 107.9 0.3 54 410-463 40-96 (97)
18 2ypr_A Protein FEV; transcript 99.1 4.9E-12 1.7E-16 109.1 -1.6 57 409-467 34-92 (102)
19 1fli_A FLI-1; transcription/DN 99.1 1.1E-11 3.6E-16 106.2 -1.1 54 409-462 32-87 (98)
20 1wwx_A E74-like factor 5 ESE-2 99.0 1.6E-11 5.5E-16 106.5 -1.4 59 409-468 37-97 (107)
21 1pue_E Protein (transcription 99.0 3.4E-11 1.2E-15 101.5 -1.0 49 415-464 37-88 (89)
22 3cwv_A DNA gyrase, B subunit, 98.7 2.6E-08 9E-13 102.7 7.7 101 160-264 169-281 (369)
23 1s16_A Topoisomerase IV subuni 98.3 1.3E-06 4.3E-11 90.8 7.8 98 161-263 180-287 (390)
24 1ei1_A DNA gyrase B, GYRB; ATP 98.1 3.8E-06 1.3E-10 87.2 6.8 99 161-263 182-288 (391)
25 1kij_A DNA gyrase subunit B; t 97.9 1.1E-05 3.8E-10 83.6 7.5 87 161-253 181-276 (390)
26 1y4s_A Chaperone protein HTPG; 97.9 7.5E-06 2.6E-10 88.7 4.7 90 162-254 190-310 (559)
27 2ioq_A Chaperone protein HTPG; 97.9 1.3E-05 4.6E-10 87.8 6.7 89 162-254 190-310 (624)
28 2o1u_A Endoplasmin; GRP94, HSP 97.5 3.6E-05 1.2E-09 85.0 3.3 89 162-254 210-334 (666)
29 3fv5_A DNA topoisomerase 4 sub 84.2 0.6 2E-05 43.9 3.3 28 160-187 165-192 (201)
30 3rbn_A DNA mismatch repair pro 82.3 2 6.8E-05 43.0 6.3 93 276-374 60-178 (284)
31 2q2e_B Type 2 DNA topoisomeras 77.7 0.075 2.6E-06 58.3 -6.1 76 162-238 189-269 (621)
32 3ttz_A DNA gyrase subunit B; p 51.5 9.1 0.00031 35.8 3.2 26 161-186 156-181 (198)
33 2zbk_B Type 2 DNA topoisomeras 43.2 15 0.0005 39.5 3.6 74 161-234 182-262 (530)
34 2x4h_A Hypothetical protein SS 39.6 12 0.0004 31.6 1.7 18 338-355 46-63 (139)
35 1mu5_A Type II DNA topoisomera 34.5 25 0.00087 37.0 3.7 72 163-234 186-263 (471)
36 3azd_A Short alpha-tropomyosin 32.5 20 0.00068 25.2 1.7 18 83-100 4-21 (37)
37 4duh_A DNA gyrase subunit B; s 32.1 27 0.00093 33.2 3.2 26 161-186 183-208 (220)
38 2l5g_A GPS2 protein, G protein 28.1 56 0.0019 23.2 3.3 24 76-99 8-31 (38)
39 2w6b_A RHO guanine nucleotide 27.0 98 0.0034 23.7 4.8 33 84-116 11-52 (56)
40 2q2f_A Selenoprotein S; anti-p 26.3 42 0.0014 28.0 2.9 42 56-103 41-82 (89)
No 1
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=100.00 E-value=2.6e-38 Score=299.70 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=131.7
Q ss_pred ccceEEEEEcCeEEEEEeCCceEEEEehhhHHHHHHHHHHHhhc---CccCC-CCCceEeecCHHHHHHHHHHHHHHhhc
Q psy8492 275 SNKLVIAQVDKKYIVVLLNKTLLVAFDQHAVDERIRVEKLFSYG---AFLSH-PITPCVLNLTPQEINTLSNRQTCLQYY 350 (489)
Q Consensus 275 ~~~~vIgQl~~~YILae~~dgLLvLIDQHAAHERIlyErL~~~~---~i~sQ-LLiPl~l~Ls~~E~~~Lee~~e~L~~l 350 (489)
+.+++|||++++|||++.++|| ||||||||||||+||+|++.+ ++.+| ||+|++++|++.|.+.++++.+.|++|
T Consensus 7 ~~~~~igQ~~~~yIl~~~~~~L-~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~P~~l~ls~~e~~~l~~~~~~l~~~ 85 (197)
T 3kdg_A 7 PIMYPIGQMHGTYILAQNENGL-YIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYSTNEALIIEQHKQELESV 85 (197)
T ss_dssp CCCEEEEEETTTEEEEEETTEE-EEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEEEEECCTTHHHHHHHTHHHHHHT
T ss_pred CCCeEEEEEcCEEEEEEeCCCE-EEEEHHHHHHHHHHHHHHHHHccCCCCccccCCCEEEecCHHHHHHHHHHHHHHHhC
Confidence 3579999999999999999997 999999999999999999976 45677 999999999999999999999999999
Q ss_pred CeEEEEeCCCcEEEEeecCcchhhccchhh-----hhh-----------hhh---ccCccchhhhcCcCChhhhcC--Cc
Q psy8492 351 GLEFEFKNTGKCVKVTHVPKCLFVKVHKEE-----DRI-----------REN---QTSREPTSTVYDKVCLGRESN--PQ 409 (489)
Q Consensus 351 Gfeie~fG~~~ti~VrsVPalL~~~~~~~~-----~~l-----------r~~---~~~r~~AIK~gD~LS~~E~e~--~q 409 (489)
||+++.|| ++++.|++||+++........ ..+ +.. .++|++|||+|+.||.+||+. ++
T Consensus 86 Gf~~e~~g-~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~~~~~~~~~~~~~~~~ACr~AIk~g~~Ls~~Em~~Ll~~ 164 (197)
T 3kdg_A 86 GVFLESFG-SNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKNIDIKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDD 164 (197)
T ss_dssp TCCCEECS-TTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHH
T ss_pred CCEEEECC-CCEEEEEecCcccccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhHhhccCCCCCCHHHHHHHHHH
Confidence 99999999 699999999999976543211 000 010 234556999999999999999 99
Q ss_pred cCCCCCCcccCCCCCCCCCCCcCChhhhhh
Q psy8492 410 SSACKHVFPRKHHVLRSPMYPNVCLSKFTR 439 (489)
Q Consensus 410 L~~ce~PftCPHGrpRp~m~P~mnyeKLsR 439 (489)
|+.|++||+|||| ||++.+ +..+.|.+
T Consensus 165 L~~~~~p~~CpHG--RPt~~~-l~~~elek 191 (197)
T 3kdg_A 165 LRSTSDPFTCPHG--RPIIIH-HSTYEMEK 191 (197)
T ss_dssp HHHSSCTTBCTTS--CBCEEE-EEHHHHHH
T ss_pred HHcCCCCCcCCCC--CcEEEE-eCHHHHHH
Confidence 9999999999999 999874 54445554
No 2
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.1e-37 Score=299.17 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=134.7
Q ss_pred cceEEEEEcCeEEEEEeCCceEEEEehhhHHHHHHHHHHHhhc----CccCC-CCCceEeecCHHHHHHHHHHHHHHhhc
Q psy8492 276 NKLVIAQVDKKYIVVLLNKTLLVAFDQHAVDERIRVEKLFSYG----AFLSH-PITPCVLNLTPQEINTLSNRQTCLQYY 350 (489)
Q Consensus 276 ~~~vIgQl~~~YILae~~dgLLvLIDQHAAHERIlyErL~~~~----~i~sQ-LLiPl~l~Ls~~E~~~Lee~~e~L~~l 350 (489)
.+++|||++++|||++.++|| ||||||||||||+||+|++++ ++.+| ||+|++++|++.|.++++++.+.|++|
T Consensus 29 ~g~vigQv~~~YIL~e~~~gL-~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~P~~l~Ls~~e~~~l~~~~~~L~~l 107 (220)
T 3ncv_A 29 LGFAIAQLLGIYILAQAEDSL-LLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADHAETLAGF 107 (220)
T ss_dssp TCEEEEEETTTEEEEEETTEE-EEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHT
T ss_pred CceeeeeEcCEEEEEEeCCCE-EEEEHHHHHHHHHHHHHHHHHhccCCccceeeCCCeEEEcCHHHHHHHHHHHHHHHhC
Confidence 569999999999999999997 999999999999999999864 36677 999999999999999999999999999
Q ss_pred CeEEEEeCCCcEEEEeecCcchhhccchhh-----hhhh------------h---hccCccchhhhcCcCChhhhcC--C
Q psy8492 351 GLEFEFKNTGKCVKVTHVPKCLFVKVHKEE-----DRIR------------E---NQTSREPTSTVYDKVCLGRESN--P 408 (489)
Q Consensus 351 Gfeie~fG~~~ti~VrsVPalL~~~~~~~~-----~~lr------------~---~~~~r~~AIK~gD~LS~~E~e~--~ 408 (489)
||+++.|| ++++.|++||++|...+.... ..+. . ..++|.+|||+|+.||.+||+. +
T Consensus 108 Gf~ie~fg-~~~v~V~~vP~~l~~~d~~~ll~~ll~~l~~~~~~~~~~~~~~~~~as~ACr~AIk~g~~Ls~~Em~~Ll~ 186 (220)
T 3ncv_A 108 GLELSDMG-GNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRILATMSCHGSIRAGRRLTLPEMNALLR 186 (220)
T ss_dssp TCEEECCS-TTEEEEEEEETTSCCSCHHHHHHHHHHHHTTCC-----CTTHHHHHHHHTTCSSSCSSCCCCHHHHHHHHH
T ss_pred CCEEEECC-CCEEEEEEcCcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 99999999 799999999999976543211 1110 0 0234556999999999999999 9
Q ss_pred ccCCCCCCcccCCCCCCCCCCCcCChhhhhh
Q psy8492 409 QSSACKHVFPRKHHVLRSPMYPNVCLSKFTR 439 (489)
Q Consensus 409 qL~~ce~PftCPHGrpRp~m~P~mnyeKLsR 439 (489)
+|+.|++||+|||| ||++. .+..+.|.+
T Consensus 187 ~L~~~~~P~~CPHG--RPt~i-~ls~~eLek 214 (220)
T 3ncv_A 187 DMENTPRSNQCNHG--RPTWV-KLTLKELDT 214 (220)
T ss_dssp HHHTSTTTTBCTTS--CBSEE-EEEHHHHHH
T ss_pred HHHhCCCCCcCCCC--CcEEE-EeCHHHHHH
Confidence 99999999999999 99886 355555543
No 3
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=99.96 E-value=1.3e-30 Score=244.97 Aligned_cols=143 Identities=13% Similarity=0.113 Sum_probs=121.8
Q ss_pred cceEEEEEcCeEEEEEeCCceEEEEehhhHHHHHHHHHHHhhc--CccCC-CCCceEeecCHHHHHHHHHHHHHHhhcCe
Q psy8492 276 NKLVIAQVDKKYIVVLLNKTLLVAFDQHAVDERIRVEKLFSYG--AFLSH-PITPCVLNLTPQEINTLSNRQTCLQYYGL 352 (489)
Q Consensus 276 ~~~vIgQl~~~YILae~~dgLLvLIDQHAAHERIlyErL~~~~--~i~sQ-LLiPl~l~Ls~~E~~~Lee~~e~L~~lGf 352 (489)
.++++||++++|||++.++|| |||||||| |||+||++++.. ++.+| ||+|++++|++.|.+.++++.+.|+++||
T Consensus 8 ~~~vlgQ~~~~yIl~~~~~~L-~lIDQHAA-ERi~yE~l~~~~~~~~~~Q~LL~P~~l~ls~~e~~~l~~~~~~l~~~Gf 85 (188)
T 1x9z_A 8 FGRVLTIVHSDCALLERDGNI-SLLSLPVA-ERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAELGI 85 (188)
T ss_dssp CCEEEEEETTTEEEEEETTEE-EEEEHHHH-HHHHHHHHHSBTTBCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred CceeeeeecCEEEEEEeCCCE-EEEeHHHH-HHHHHHHHHHhcCCCCCcccCCCCEEEEeCHHHHHHHHHHHHHHHhCCc
Confidence 568999999999999999997 99999999 999999999862 45677 99999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeecCcchhhccchhh-----hhhh-------h---hccCccchhhhcCcCChhhhcC--CccCCCCC
Q psy8492 353 EFEFKNTGKCVKVTHVPKCLFVKVHKEE-----DRIR-------E---NQTSREPTSTVYDKVCLGRESN--PQSSACKH 415 (489)
Q Consensus 353 eie~fG~~~ti~VrsVPalL~~~~~~~~-----~~lr-------~---~~~~r~~AIK~gD~LS~~E~e~--~qL~~ce~ 415 (489)
+++.|| ++ ++|++||++|...+.... ..+. . ..++|.+ ||+|+.|+..||.. ++|..|
T Consensus 86 ~~e~~g-~~-~~v~~vP~~l~~~~~~~li~~ll~~l~~~~~~~~~~~~~~~AC~~-ik~g~~Ls~~em~~Ll~~L~~~-- 160 (188)
T 1x9z_A 86 DFQSDA-QH-VTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGNIAQWIARNL-MSEHAQWSMAQAITLLADVERL-- 160 (188)
T ss_dssp EEEECS-SE-EEEEEEEGGGTTSCHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT-SCCCCSCCHHHHHHHHHHHHHH--
T ss_pred EEEEcC-Cc-EEEEecCchhcccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHhh-CccCCCCCHHHHHHHHHHHHhH--
Confidence 999999 57 999999999976542221 1110 0 0235665 99999999999999 999999
Q ss_pred CcccCCCCCCCCCCC
Q psy8492 416 VFPRKHHVLRSPMYP 430 (489)
Q Consensus 416 PftCPHGrpRp~m~P 430 (489)
|||| ||+|.+
T Consensus 161 ---CpHG--RPt~~~ 170 (188)
T 1x9z_A 161 ---CPQL--VKTPPG 170 (188)
T ss_dssp ---CHHH--HHSCCT
T ss_pred ---CCCC--CcCcch
Confidence 9999 888754
No 4
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=99.72 E-value=4.6e-19 Score=160.79 Aligned_cols=78 Identities=56% Similarity=0.919 Sum_probs=68.6
Q ss_pred cCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeeccChhhhhCCChhhhhhccccccCCCC
Q psy8492 410 SSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKD 487 (489)
Q Consensus 410 L~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~~~~~~~~~~~~~~~~~~~~~~~~ 487 (489)
.|...+|-..+.-|+..+++|+|||+|||| ||||++|||.||+|+|+||+|+||+..|+||+|+|||.+++++|+.+|
T Consensus 67 eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY~F~~~~~~l~g~~~~e~~~~~~~~p~~~~ 146 (146)
T 1gvj_A 67 EFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKPDADE 146 (146)
T ss_dssp EEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSEEEECSCHHHHHSCCHHHHHHHTTCC-----
T ss_pred EEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEEeccchHhhcCCCHHHHHHHhCCCCCCCC
Confidence 466777777777777999999999999999 999999999999999999999999999999999999999999998765
No 5
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=99.70 E-value=1.6e-18 Score=160.60 Aligned_cols=78 Identities=55% Similarity=0.871 Sum_probs=68.6
Q ss_pred cCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeeccChhhhhCCChhhhhhccccccCCCC
Q psy8492 410 SSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKKD 487 (489)
Q Consensus 410 L~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~~~~~~~~~~~~~~~~~~~~~~~~ 487 (489)
.|...+|-..+.-|+..+++|+|||+||+| ||||++|||.||.|+||||+|+||+..|+||+|+|||.+++++|+.+|
T Consensus 92 eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY~F~~d~~~l~g~~~~el~~~~~~~p~~~~ 171 (171)
T 2nny_A 92 EFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLLGYTPEELHAMLDVKPDADE 171 (171)
T ss_dssp EEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTEEEECTTHHHHHCCCHHHHHHHTTCC-----
T ss_pred EEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEEEEeCCChHHHcCCCHHHHHHHhcCCCCCCC
Confidence 466777777777777999999999999999 999999999999999999999999999999999999999999998764
No 6
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.69 E-value=4.4e-17 Score=166.98 Aligned_cols=105 Identities=15% Similarity=0.215 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHhhhcCCCceEEEEeCCcccc-hhhhhhccHHHHHHHHccHHHhcccCcc--ccC--CeEEEEEEeCCC
Q psy8492 160 NERKYCEDNIKVDNNLERKTKYCLEANEQKPE-EAEEIAIEQLEVAKDIYAMKMVENFPEH--KRE--DYEVDGYISREP 234 (489)
Q Consensus 160 ~E~~h~~d~vkRlALa~p~v~F~L~~ngr~l~-~~~~~s~~l~eRIa~IlG~~fa~~li~I--e~~--~l~I~G~Is~P~ 234 (489)
-|+.+|.+.|+++|+++|+|+|+|.++|+... -.+..++++.+||.+|||.+++++|+++ +.+ +++|+|||++|+
T Consensus 172 ~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~i~G~is~p~ 251 (348)
T 3na3_A 172 EEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYISNAN 251 (348)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEEGGGTEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEECCEEEEEeecCCCCCHHHHHHHHhChHhHhhcEEEEeecCCccEEEEEEEeCCc
Confidence 58999999999999999999999999999431 1223346899999999999999999999 333 699999999999
Q ss_pred CCCC-cceEEeeccccccchhHHHHHHHhhc
Q psy8492 235 ISQP-QYQNIYINKRLVTNTILHDTINKLLV 264 (489)
Q Consensus 235 ~sR~-~~Qy~FVNGR~VRdk~L~~AIr~AL~ 264 (489)
++++ ..||+|||||+|+++.|.+||.+||.
T Consensus 252 ~~~~~~~q~~fVNgR~v~~~~l~~ai~~~y~ 282 (348)
T 3na3_A 252 YSVKKCIFLLFINHRLVESTSLRKAIETVYA 282 (348)
T ss_dssp CCBSSCEEEEEETTEECCCTTHHHHHHHHHH
T ss_pred cCCCcccEEEEECCeEecCHHHHHHHHHHHH
Confidence 9877 88999999999999999999999974
No 7
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.61 E-value=7.3e-16 Score=158.94 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHhhhcCCCceEEEEeC---Cc-ccchhhhhhccHHHHHHHHccHHHhcccCcc-c--------------
Q psy8492 160 NERKYCEDNIKVDNNLERKTKYCLEAN---EQ-KPEEAEEIAIEQLEVAKDIYAMKMVENFPEH-K-------------- 220 (489)
Q Consensus 160 ~E~~h~~d~vkRlALa~p~v~F~L~~n---gr-~l~~~~~~s~~l~eRIa~IlG~~fa~~li~I-e-------------- 220 (489)
-|+.+|.+.|+++|+++|+|+|+|.++ |+ .+...+.+++++.+||.+|||.+++.+|+++ .
T Consensus 169 ~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~~~ 248 (367)
T 3h4l_A 169 RQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKNRMLGK 248 (367)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEEEEECGGGCCCCC--
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCcceEEEECCCCCCHHHHHHHHhCHHHHhccEEEeccccccccccccccc
Confidence 489999999999999999999999984 43 2221233446899999999999999999987 2
Q ss_pred ----------cCCeEEEEEEeCCCC--CCC--cceEEeeccccccchhHHHHHHHhhc
Q psy8492 221 ----------REDYEVDGYISREPI--SQP--QYQNIYINKRLVTNTILHDTINKLLV 264 (489)
Q Consensus 221 ----------~~~l~I~G~Is~P~~--sR~--~~Qy~FVNGR~VRdk~L~~AIr~AL~ 264 (489)
.++++|+|||++|++ .|+ ++||||||||||+++.|.+||.+||.
T Consensus 249 ~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~ 306 (367)
T 3h4l_A 249 YTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYK 306 (367)
T ss_dssp ----------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHH
T ss_pred ccccccccccCCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecCHHHHHHHHHHHH
Confidence 246899999999996 566 89999999999999999999999974
No 8
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.60 E-value=1.4e-15 Score=156.44 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHhhhcCCCceEEEEeCCc----ccchhhhhhccHHHHHHHHccHHHhcccCcc--cc------------
Q psy8492 160 NERKYCEDNIKVDNNLERKTKYCLEANEQ----KPEEAEEIAIEQLEVAKDIYAMKMVENFPEH--KR------------ 221 (489)
Q Consensus 160 ~E~~h~~d~vkRlALa~p~v~F~L~~ngr----~l~~~~~~s~~l~eRIa~IlG~~fa~~li~I--e~------------ 221 (489)
.|+++|.+.|+++|+++|+|.|+|.++|. .+...+++++++.+||.+|||.+++++|+++ ..
T Consensus 179 ~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~i~~~~~~~~~~~~~~~~ 258 (365)
T 1h7s_A 179 KEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLS 258 (365)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHHCHHHHHTEEECCCCCCCHHHHHHHTCC
T ss_pred HHHHHHHHhhhhhhhcCCceEEEEEecCCCCcEEEEEEcCCCchHHHHHHHhcChHhHhceEEEeccCCccccccccccc
Confidence 48999999999999999999999999882 1111223345899999999999999999998 22
Q ss_pred ------CCeEEEEEEeCCCCC--CC--cceEEeeccccccchhHHHHHHHhhc
Q psy8492 222 ------EDYEVDGYISREPIS--QP--QYQNIYINKRLVTNTILHDTINKLLV 264 (489)
Q Consensus 222 ------~~l~I~G~Is~P~~s--R~--~~Qy~FVNGR~VRdk~L~~AIr~AL~ 264 (489)
++++|+||++.|+++ |+ +.||||||||+|+++.|.+||.+||.
T Consensus 259 ~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~~~l~~ai~~~y~ 311 (365)
T 1h7s_A 259 CSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYH 311 (365)
T ss_dssp TTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECCHHHHHHHHHHHH
T ss_pred ccccccccEEEEEEEeCcccccccCCCcceEEEECCeEecCHHHHHHHHHHHH
Confidence 579999999999988 76 89999999999999999999999974
No 9
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=99.60 E-value=1.2e-16 Score=139.14 Aligned_cols=71 Identities=39% Similarity=0.668 Sum_probs=64.8
Q ss_pred cCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeeccChhhhhCCChhhhhhccc
Q psy8492 410 SSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVD 480 (489)
Q Consensus 410 L~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~~~~~~~~~~~~~~~~~ 480 (489)
.|...+|-..+.-|+..+++|+|||+|||| ||||++|||.||+|+|+||+|+|||..|+||++.|+++++.
T Consensus 28 eFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~F~~~~~~l~g~~~~~~~~~~~ 100 (110)
T 1awc_A 28 EFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVI 100 (110)
T ss_dssp EEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEecCCCHHHHhCCCHHHHHHHHH
Confidence 455667777777777889999999999999 99999999999999999999999999999999999999875
No 10
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.55 E-value=5.5e-15 Score=149.88 Aligned_cols=105 Identities=13% Similarity=0.160 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHhhhcCCCceEEEEeCCcccchh--hhhhccHHHHHHHHccHHHhcccCcc--ccCCeEEEEEEeCCCC
Q psy8492 160 NERKYCEDNIKVDNNLERKTKYCLEANEQKPEEA--EEIAIEQLEVAKDIYAMKMVENFPEH--KREDYEVDGYISREPI 235 (489)
Q Consensus 160 ~E~~h~~d~vkRlALa~p~v~F~L~~ngr~l~~~--~~~s~~l~eRIa~IlG~~fa~~li~I--e~~~l~I~G~Is~P~~ 235 (489)
.|+++|.+.|+++|+++|+|.|+|.+||+.+... ...++++.+||..+||.+++++++++ +.++++|+||++.|++
T Consensus 168 ~e~~~i~~~~~~~al~~p~v~~~l~~ng~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~li~i~~~~~~~~v~G~i~~p~~ 247 (333)
T 1b63_A 168 TEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWVADPNH 247 (333)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEETTEEEEEECCCCTTCCTHHHHHHHHCHHHHHHEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEEECCEEEEecCCCCCCchHHHHHHHHhChhhHhheEEEEecCCCEEEEEEEEcCcc
Confidence 4889999999999999999999999999933211 11124788999999999999999999 7789999999999998
Q ss_pred CCC---cceEEeeccccccchhHHHHHHHhhc
Q psy8492 236 SQP---QYQNIYINKRLVTNTILHDTINKLLV 264 (489)
Q Consensus 236 sR~---~~Qy~FVNGR~VRdk~L~~AIr~AL~ 264 (489)
+|+ +.||+|||||+|+++.|.+||.+|+.
T Consensus 248 ~~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~ 279 (333)
T 1b63_A 248 TTPALAEIQYCYVNGRMMRDRLINHAIRQACE 279 (333)
T ss_dssp CCTTGGGCEEEEETTEECCCHHHHHHHHHHHH
T ss_pred ccCCCCCcEEEEECCEEecCHHHHHHHHHHHH
Confidence 874 78999999999999999999999864
No 11
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=99.30 E-value=4.9e-16 Score=138.08 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=66.5
Q ss_pred cCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeeccChhhhhCCChhhhhhcccc
Q psy8492 410 SSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDL 481 (489)
Q Consensus 410 L~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~~~~~~~~~~~~~~~~~~ 481 (489)
.|...+|...+.-|+..+++|+|||+||+| ||||++|||.||+|+|+||+|+|+|++|++++..+|..+..-
T Consensus 33 eFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY~k~Ii~Kv~GqrlvY~F~~~p~~l~~~~~~~~~~~~~~ 106 (128)
T 2lf8_A 33 IFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFMKTPDEIMSGRTDRLEHLESQ 106 (128)
Confidence 567778888888888999999999999999 999999999999999999999999999999999999887653
No 12
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-15 Score=132.67 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=64.2
Q ss_pred cCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeeccChhhhhCCChhhhhhccc
Q psy8492 410 SSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVD 480 (489)
Q Consensus 410 L~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~~~~~~~~~~~~~~~~~ 480 (489)
.|...+|...+.-|+..+++|+|||+||+| ||||++|||.||+|+||||+|+|+|++++++++.++.++..
T Consensus 37 ~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~vY~F~~~p~~~~~~~~~~~~~~~~ 109 (118)
T 2dao_A 37 IFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFMKTPDEIMSGRTDRLEHLES 109 (118)
T ss_dssp EEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSEEEECSCSGGGCCCSSSCGGGGGS
T ss_pred eEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEEEEecCCHHHHhccchHHhhhhhc
Confidence 466667777777677889999999999999 99999999999999999999999999999999999998654
No 13
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=99.46 E-value=2.7e-15 Score=130.13 Aligned_cols=63 Identities=33% Similarity=0.549 Sum_probs=56.4
Q ss_pred CCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeeccChhhhhCCChh
Q psy8492 411 SACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPE 473 (489)
Q Consensus 411 ~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~~~~~~~~~~ 473 (489)
+...+|...+.-|+..+++|+|||+||+| ||||++|||.||.|+|+||+|+|||++|+||...
T Consensus 40 Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYkF~~~p~~l~~~~~~ 104 (106)
T 4avp_A 40 FKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFS 104 (106)
T ss_dssp EEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEEECCSHHHHHHHHC-
T ss_pred EEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEEecCCHHHHHhccCC
Confidence 55667777777788899999999999999 9999999999999999999999999999998643
No 14
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=99.35 E-value=5.8e-14 Score=119.20 Aligned_cols=59 Identities=32% Similarity=0.431 Sum_probs=52.4
Q ss_pred cCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeeccChhhhh
Q psy8492 410 SSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLL 468 (489)
Q Consensus 410 L~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~~~~~ 468 (489)
.+...+|-..+.-|+..+++|+|||+|||| ||||++|||.||+|+|+||+|+|+|+.|.
T Consensus 32 ~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F~~~p~~~~ 92 (93)
T 1bc8_C 32 QFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKFVSYPEILN 92 (93)
T ss_dssp EEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEETTTTGGGC
T ss_pred EEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEeCCChHHhc
Confidence 466667777777677889999999999999 99999999999999999999999998763
No 15
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=99.34 E-value=1.4e-13 Score=125.90 Aligned_cols=70 Identities=29% Similarity=0.418 Sum_probs=53.1
Q ss_pred cCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeeccChhhhhCCChhhhhhccc
Q psy8492 410 SSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVD 480 (489)
Q Consensus 410 L~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~~~~~~~~~~~~~~~~~ 480 (489)
.|...+|-..+.-|+..+++|+|||+||+| ||||++|||.||.|+||||+|+|+| +++.++|..+...-+
T Consensus 33 eFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF~~~p-~~l~~~p~~~~~~~~ 104 (157)
T 1hbx_G 33 QFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKFVSYP-EILNMDPMTVGRIEG 104 (157)
T ss_dssp CEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEESSTT-GGGCC----------
T ss_pred EEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEeeCCCH-HHhcCCccccccccC
Confidence 355667777777777889999999999999 9999999999999999999999988 467889888754433
No 16
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=99.24 E-value=8.3e-13 Score=114.09 Aligned_cols=64 Identities=25% Similarity=0.420 Sum_probs=54.6
Q ss_pred cCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeeccChhhhhCCChhhhh
Q psy8492 410 SSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELH 476 (489)
Q Consensus 410 L~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~~~~~~~~~~~~~ 476 (489)
.|...+|...+.-|+..+++|+|||+||+| ||||++|||.||+|+|+||+|+++ ..|+.++|+-
T Consensus 34 ~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~F~~~---~~g~~~~~~~ 99 (103)
T 3jtg_A 34 VFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKN---SSGWKEEEVG 99 (103)
T ss_dssp EEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEEBCTT---CCSCSTTTC-
T ss_pred eEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEEeCCC---ccCCCHHHhc
Confidence 455556666777777889999999999999 999999999999999999999996 4589988864
No 17
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=99.13 E-value=5.4e-12 Score=107.85 Aligned_cols=54 Identities=28% Similarity=0.341 Sum_probs=47.2
Q ss_pred cCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccc-cceEEEeeccC
Q psy8492 410 SSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTA-GKRYVYRFVCD 463 (489)
Q Consensus 410 L~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~-g~r~vy~F~~d 463 (489)
.|...+|-..+.-|+..+++|+|||+||+| ||||++|||.||+ |+|+||+|+|.
T Consensus 40 ~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~~ii~Kv~~g~r~vY~F~~~ 96 (97)
T 1yo5_C 40 IFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVHP 96 (97)
T ss_dssp EEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTTTSEECCSSCCTTEEEESCC
T ss_pred EEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEeeccCCcEEEEecCCC
Confidence 455566777777677888999999999999 9999999999997 89999999984
No 18
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=99.09 E-value=4.9e-12 Score=109.07 Aligned_cols=57 Identities=40% Similarity=0.596 Sum_probs=49.7
Q ss_pred ccCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeeccChhhh
Q psy8492 409 QSSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTL 467 (489)
Q Consensus 409 qL~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~~~~ 467 (489)
..+...+|...+.-|+..+++|+|||+||+| ||||++|||.||.|+||||+| ++..|
T Consensus 34 g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYkF--~~~~l 92 (102)
T 2ypr_A 34 GEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRF--DFQGL 92 (102)
T ss_dssp TEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEEE--CHHHH
T ss_pred ceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEEe--CCCcH
Confidence 3456667777888788999999999999999 999999999999999999999 55554
No 19
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=99.06 E-value=1.1e-11 Score=106.23 Aligned_cols=54 Identities=35% Similarity=0.522 Sum_probs=47.0
Q ss_pred ccCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeecc
Q psy8492 409 QSSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVC 462 (489)
Q Consensus 409 qL~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~ 462 (489)
..|...+|-..+.-|+..+++|+|||+||+| ||||++|||.||+|+||||+|..
T Consensus 32 g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY~k~i~~Kv~gkr~vY~F~~ 87 (98)
T 1fli_A 32 GEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDF 87 (98)
T ss_dssp SSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHTTSCCCBGGGSSBCCCCT
T ss_pred CEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHcCcEeecCCCeEEEEecC
Confidence 3456666777777677899999999999999 99999999999999999999953
No 20
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=99.02 E-value=1.6e-11 Score=106.53 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=50.6
Q ss_pred ccCCCCCCcccCCCCCCCCCCCcCChhhhhh--hhcccCCcccccccceEEEeeccChhhhh
Q psy8492 409 QSSACKHVFPRKHHVLRSPMYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLL 468 (489)
Q Consensus 409 qL~~ce~PftCPHGrpRp~m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~~~~~ 468 (489)
..|...+|-..+.-|+..+++|+|||+||+| ||||++|||.|| ++||||+|++++..+.
T Consensus 37 g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv-~~rlvY~F~~~~~~~~ 97 (107)
T 1wwx_A 37 GIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERV-DRRLVYKFGKNAHGWQ 97 (107)
T ss_dssp TEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECC-SSSSEEEECSSCCSSC
T ss_pred CEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEec-cceEEEEeCCchhhhe
Confidence 3466667777777777899999999999999 999999999999 5999999999776554
No 21
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=98.98 E-value=3.4e-11 Score=101.53 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=41.4
Q ss_pred CCcccCCCCCCCC-CCCcCChhhhhh--hhcccCCcccccccceEEEeeccCh
Q psy8492 415 HVFPRKHHVLRSP-MYPNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDL 464 (489)
Q Consensus 415 ~PftCPHGrpRp~-m~P~mnyeKLsR--Ryyy~k~ii~Kv~g~r~vy~F~~d~ 464 (489)
+|-..+.-|+..+ ++|+|||+|||| ||||++|||.||+ +|+||+|++|.
T Consensus 37 ~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r~vY~F~~~~ 88 (89)
T 1pue_E 37 HKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KKLTYQFSGEV 88 (89)
T ss_dssp THHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-STTEEEECTTC
T ss_pred ChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ceEEEeecccc
Confidence 4545555555666 899999999999 9999999999997 89999998863
No 22
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.67 E-value=2.6e-08 Score=102.71 Aligned_cols=101 Identities=6% Similarity=-0.068 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHhhhcCCCceEEEEeCC---cccchhhhhhccHHHHHHHHccHH--HhcccCcc--ccCCeEEEEEEeC
Q psy8492 160 NERKYCEDNIKVDNNLERKTKYCLEANE---QKPEEAEEIAIEQLEVAKDIYAMK--MVENFPEH--KREDYEVDGYISR 232 (489)
Q Consensus 160 ~E~~h~~d~vkRlALa~p~v~F~L~~ng---r~l~~~~~~s~~l~eRIa~IlG~~--fa~~li~I--e~~~l~I~G~Is~ 232 (489)
-|+.+|.+.|+++|+++|+|.|+|.+++ +..... +. .+.++|..++|.+ +.+.++++ +.++++|+|+++.
T Consensus 169 ~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~-~g--Gl~~~v~~l~~~~~~~~~~~i~~~~~~~~i~ve~a~~~ 245 (369)
T 3cwv_A 169 FDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHL-PG--GVAQWAHVLTEARPQLHPEPVVFDFTWDGLRVQCALQW 245 (369)
T ss_dssp CCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEEC-TT--HHHHHHHHHHTTSCBSSSSCEEEEEEETTEEEEEEEEE
T ss_pred ccHHHHHHHHHHHcCcCCCcEEEEEeCCCCeeEEEEe-Cc--hHHHHHHHHhcCCcccCCCcEEEEEecCCEEEEEEEEe
Confidence 4689999999999999999999999998 422212 22 6899999999976 55677777 6678999999998
Q ss_pred CCCCCCcceEEeeccccccc-----hhHHHHHHHhhc
Q psy8492 233 EPISQPQYQNIYINKRLVTN-----TILHDTINKLLV 264 (489)
Q Consensus 233 P~~sR~~~Qy~FVNGR~VRd-----k~L~~AIr~AL~ 264 (489)
|. +....||.|||||++++ ..+..||.+||.
T Consensus 246 ~~-~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~ 281 (369)
T 3cwv_A 246 CE-DEDSTLLSFANAVRTVRHGAHVKGVTQALRGALA 281 (369)
T ss_dssp BS-SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHH
T ss_pred cC-CCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHH
Confidence 74 22277999999999999 999999998863
No 23
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.26 E-value=1.3e-06 Score=90.80 Aligned_cols=98 Identities=8% Similarity=-0.081 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEeCC---cccchhhhhhccHHHHHHHHccH-H-HhcccCcc--ccCCeEEEEEEeCC
Q psy8492 161 ERKYCEDNIKVDNNLERKTKYCLEANE---QKPEEAEEIAIEQLEVAKDIYAM-K-MVENFPEH--KREDYEVDGYISRE 233 (489)
Q Consensus 161 E~~h~~d~vkRlALa~p~v~F~L~~ng---r~l~~~~~~s~~l~eRIa~IlG~-~-fa~~li~I--e~~~l~I~G~Is~P 233 (489)
|+.+|.+.|+++|+++|+|.|+|.+++ +..... + +.+.++|..++|. + +....+++ +.++++|+|+++.|
T Consensus 180 e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~-~--gGl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~ve~a~~~~ 256 (390)
T 1s16_A 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY-Q--DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWL 256 (390)
T ss_dssp CHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECC-S--SCHHHHHHHHHTTSCCEEEEEEEEEEECSSEEEEEEEEEC
T ss_pred cHHHHHHHHHHHHhcCCCcEEEEEeCCCceeEEEEc-C--CcHHHHHHHHhCCCcccCCCcEEEEEeeCCEEEEEEEEec
Confidence 688999999999999999999999998 321111 2 2699999999986 3 45567777 66789999999998
Q ss_pred CCCCC--cceEEeeccccccch-hHHHHHHHhh
Q psy8492 234 PISQP--QYQNIYINKRLVTNT-ILHDTINKLL 263 (489)
Q Consensus 234 ~~sR~--~~Qy~FVNGR~VRdk-~L~~AIr~AL 263 (489)
+++ ..||.|||||++++. .-..+++.||
T Consensus 257 --~~~~~~~~~sFvN~i~t~~GGTH~~gfr~al 287 (390)
T 1s16_A 257 --PEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 (390)
T ss_dssp --TTCCCCCEEEEETTEECTTCBHHHHHHHHHH
T ss_pred --cCCCCceEEEEECCEecCCCCCHHHHHHHHH
Confidence 455 789999999999984 4444455553
No 24
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.07 E-value=3.8e-06 Score=87.25 Aligned_cols=99 Identities=8% Similarity=-0.025 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEeCC---cccchhhhhhccHHHHHHHHccHH--HhcccCcc--ccCCeEEEEEEeCC
Q psy8492 161 ERKYCEDNIKVDNNLERKTKYCLEANE---QKPEEAEEIAIEQLEVAKDIYAMK--MVENFPEH--KREDYEVDGYISRE 233 (489)
Q Consensus 161 E~~h~~d~vkRlALa~p~v~F~L~~ng---r~l~~~~~~s~~l~eRIa~IlG~~--fa~~li~I--e~~~l~I~G~Is~P 233 (489)
|+.+|.+.|+++|+++|+|.|+|.+++ +..... + +.+.++|..++|.+ +....+.+ +.+++.|+|+++.|
T Consensus 182 e~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~-~--gGl~~~v~~l~~~~~~~~~~~i~~~~~~~~i~veva~~~~ 258 (391)
T 1ei1_A 182 EYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHY-E--GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWN 258 (391)
T ss_dssp CHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECC-C--SHHHHHHHHHHHTSCBSSSCCEEEEEEETTEEEEEEEEEB
T ss_pred CHHHHHHHHHHhcccCCCcEEEEEcCCCcceEEEEc-C--chHHHHHHHHcCCCcccccccEEEEEecCCEEEEEEEEcc
Confidence 689999999999999999999999988 311111 2 26889999998875 55566666 66789999999987
Q ss_pred CCCCCcceEEeeccccccch-hHHHHHHHhh
Q psy8492 234 PISQPQYQNIYINKRLVTNT-ILHDTINKLL 263 (489)
Q Consensus 234 ~~sR~~~Qy~FVNGR~VRdk-~L~~AIr~AL 263 (489)
.- ....||.|||||++++. .-..+++.||
T Consensus 259 ~~-~~e~~~sFvN~i~t~~GGTH~~gfr~al 288 (391)
T 1ei1_A 259 DG-FQENIYCFTNNIPQRDGGTHLAGFRAAM 288 (391)
T ss_dssp SS-CCEEEEEEETTEECTTCBHHHHHHHHHH
T ss_pred CC-CCeeEEEEEcceecCCCCcHHHHHHHHH
Confidence 31 12678999999999987 4444455553
No 25
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=97.95 E-value=1.1e-05 Score=83.58 Aligned_cols=87 Identities=11% Similarity=-0.023 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEeCCc---ccchhhhhhccHHHHHHHHccHH--HhcccCcc--ccCCeEEEEEEeCC
Q psy8492 161 ERKYCEDNIKVDNNLERKTKYCLEANEQ---KPEEAEEIAIEQLEVAKDIYAMK--MVENFPEH--KREDYEVDGYISRE 233 (489)
Q Consensus 161 E~~h~~d~vkRlALa~p~v~F~L~~ngr---~l~~~~~~s~~l~eRIa~IlG~~--fa~~li~I--e~~~l~I~G~Is~P 233 (489)
|+.+|.+.|+++|+++|+|.|+|.+++. ..... + +.+.++|..++|.+ +....+++ +.+++.|+|+++.
T Consensus 181 ~~~~l~~rl~~~A~lnpgv~i~l~d~~~~~~~~f~~-~--~Gl~~~v~~l~~~~~~~~~~~i~~~~~~~~i~ve~a~~~- 256 (390)
T 1kij_A 181 DPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLD-K--GGVASFAKALAEGEDLLYEKPFLIRGTHGEVEVEVGFLH- 256 (390)
T ss_dssp CHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECC-T--THHHHHHHHHTTTSCBSCSSCEEEEEEETTEEEEEEEEE-
T ss_pred cHHHHHHHHHHhcCcCCCcEEEEEeCCCcceEEEEc-C--CcHHHHHHHHhCCCCcCCCCcEEEEeecCCeEEEEEEEe-
Confidence 5789999999999999999999999873 11111 2 26899999999875 55566666 6678999999986
Q ss_pred CCCCC--cceEEeeccccccch
Q psy8492 234 PISQP--QYQNIYINKRLVTNT 253 (489)
Q Consensus 234 ~~sR~--~~Qy~FVNGR~VRdk 253 (489)
+++ ..||.|||||++++.
T Consensus 257 --~~~~~~~~~sFvN~i~t~~G 276 (390)
T 1kij_A 257 --TQGYNAEILTYANMIPTRDG 276 (390)
T ss_dssp --BSSSCCEEEEEETTEECTTC
T ss_pred --cCCCCceEEEEEcCeeeCCC
Confidence 344 789999999999983
No 26
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=97.87 E-value=7.5e-06 Score=88.71 Aligned_cols=90 Identities=10% Similarity=0.020 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhh--hcCCCceE--------------EEEeCCcccchhhhhhccH-HHHHHHHccH---HHhcccCcc--
Q psy8492 162 RKYCEDNIKVDN--NLERKTKY--------------CLEANEQKPEEAEEIAIEQ-LEVAKDIYAM---KMVENFPEH-- 219 (489)
Q Consensus 162 ~~h~~d~vkRlA--La~p~v~F--------------~L~~ngr~l~~~~~~s~~l-~eRIa~IlG~---~fa~~li~I-- 219 (489)
..+|.++|+++| +++| |.| .+.++++.+-.. +++ ++ .+++.++|+. ++.+.|..+
T Consensus 190 ~~~I~~iv~kys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~~~lw~~-~~~-~i~~e~y~~fy~~~~~d~~~~l~~ih~ 266 (559)
T 1y4s_A 190 DWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKAQALWTR-NKS-EITDEEYKEFYKHIAHDFNDPLTWSHN 266 (559)
T ss_dssp HHHHHHHHHHHHTTCSSC-EEEEEEECSTTSCEEEEEECCCCCCGGGS-CGG-GCCHHHHHHHHHHHHTCSSCEEEEEEE
T ss_pred HHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCCccceec-Ccc-cccHHHHHHHHHhhhhhhhcCeEEEEe
Confidence 789999999999 9999 999 678888722211 111 33 3488888883 566778777
Q ss_pred ccC-CeEEEEEEeCCC------CCCC--cceEEeeccccccchh
Q psy8492 220 KRE-DYEVDGYISREP------ISQP--QYQNIYINKRLVTNTI 254 (489)
Q Consensus 220 e~~-~l~I~G~Is~P~------~sR~--~~Qy~FVNGR~VRdk~ 254 (489)
..+ ++.++|++..|. ++|. +.|++|||||+|.|+.
T Consensus 267 ~~eg~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~~ 310 (559)
T 1y4s_A 267 RVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDA 310 (559)
T ss_dssp CCCSSSCEEEEEEEESSCCTTCSSSSCCCCEEEEETTEEEEEEE
T ss_pred ccCCceEEEEEEEcCCcCcchhhhhcccCCeEEEEcCEEeecch
Confidence 444 699999999999 5666 8899999999999985
No 27
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=97.87 E-value=1.3e-05 Score=87.76 Aligned_cols=89 Identities=9% Similarity=-0.001 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhh--hcCCCceE--------------EEEeCCc-ccchhhhhhccH-HHHHHHHccH---HHhcccCcc-
Q psy8492 162 RKYCEDNIKVDN--NLERKTKY--------------CLEANEQ-KPEEAEEIAIEQ-LEVAKDIYAM---KMVENFPEH- 219 (489)
Q Consensus 162 ~~h~~d~vkRlA--La~p~v~F--------------~L~~ngr-~l~~~~~~s~~l-~eRIa~IlG~---~fa~~li~I- 219 (489)
..+|.++|+++| +++| |.| .+.++++ -|.. +++ ++ .++..++|+. ++.+.|..+
T Consensus 190 ~~~i~~ivkkys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~~~lw~~--~~~-~i~~e~y~~fy~~~~~d~~~~l~~ih 265 (624)
T 2ioq_A 190 DWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKAQALWTR--NKS-EITDEEYKEFYKHIAHDFNDPLTWSH 265 (624)
T ss_dssp HHHHHHHHHHHHTTCSSC-EEEEEEEECSSCEEEEEEECCCCSCTTTS--CTT-TCCHHHHHHHHHHHHTCCSCCSCCEE
T ss_pred HHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCCccceEe--cCc-cchHHHHHHHHHhhccchhcCeEEEE
Confidence 789999999999 9999 999 6888887 3321 111 23 3488888888 667888888
Q ss_pred --ccCCeEEEEEEeCCC------CCCC--cceEEeeccccccchh
Q psy8492 220 --KREDYEVDGYISREP------ISQP--QYQNIYINKRLVTNTI 254 (489)
Q Consensus 220 --e~~~l~I~G~Is~P~------~sR~--~~Qy~FVNGR~VRdk~ 254 (489)
..+++.++|++..|. +.|. +.+++|||||+|+|+.
T Consensus 266 ~~~eg~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~~ 310 (624)
T 2ioq_A 266 NRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDA 310 (624)
T ss_dssp EEEESSSCEEEEEECCSSCCGGGSSSSCCCCEEEEESSCEEEEEE
T ss_pred ecccceEEEEEEEEeCCcCccchhhhcccCCeEEEECCEEeecch
Confidence 345799999999999 5566 8899999999999876
No 28
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=97.51 E-value=3.6e-05 Score=84.99 Aligned_cols=89 Identities=9% Similarity=0.050 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhh--hcCCCceE---------------EEEeCCc-ccchhhhhhccH-HHHHHHHcc---HHHhcccCcc
Q psy8492 162 RKYCEDNIKVDN--NLERKTKY---------------CLEANEQ-KPEEAEEIAIEQ-LEVAKDIYA---MKMVENFPEH 219 (489)
Q Consensus 162 ~~h~~d~vkRlA--La~p~v~F---------------~L~~ngr-~l~~~~~~s~~l-~eRIa~IlG---~~fa~~li~I 219 (489)
..+|.++|+++| +++| |.| .+.++++ -|.. +++ ++ .+++.++|+ .++.+.|..+
T Consensus 210 ~~~I~~ivkkys~fi~~P-I~~~~~~~~~~~~~~~~~~~iN~~~~lw~~--~~~-~i~~eey~~fy~~~~~d~~~pl~~i 285 (666)
T 2o1u_A 210 LDTIKNLVKKYSQFINFP-IYVWSSKTGGGGKTVWDWELMNDIKPIWQR--PSK-EVEDDEYKAFYKSFSKESDDPMAYI 285 (666)
T ss_dssp TTHHHHHHHHHSTTCCSC-EEEEECC-------CCEEEECSCCSCTTTS--CTT-TCCHHHHHHHHHHTTCTTSCCSEEE
T ss_pred HHHHHHHHHHHHhhCCCc-eEEeccccccccccccceEEEecCcccccc--Ccc-cccHHHHHHHHhhhccccccCeeEE
Confidence 789999999999 9999 888 5677777 2221 111 33 348999998 5667778777
Q ss_pred ---ccCCeEEEEEEeCCC------CCC---C--cceEEeeccccccchh
Q psy8492 220 ---KREDYEVDGYISREP------ISQ---P--QYQNIYINKRLVTNTI 254 (489)
Q Consensus 220 ---e~~~l~I~G~Is~P~------~sR---~--~~Qy~FVNGR~VRdk~ 254 (489)
..+++.++|++..|. +.| + ..+++|||||+|.|..
T Consensus 286 h~~~eg~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~LYVn~vfI~d~~ 334 (666)
T 2o1u_A 286 HFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDF 334 (666)
T ss_dssp EEEECSSSCEEEEEEECSSCCC------------CEEEEETTEEEESCC
T ss_pred EecccCcEEEEEEEEcCCCCchhhhhhccccccCCeEEEEcCeEeeCch
Confidence 347899999999998 665 3 7899999999999985
No 29
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=84.20 E-value=0.6 Score=43.92 Aligned_cols=28 Identities=7% Similarity=-0.066 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhhhcCCCceEEEEeCC
Q psy8492 160 NERKYCEDNIKVDNNLERKTKYCLEANE 187 (489)
Q Consensus 160 ~E~~h~~d~vkRlALa~p~v~F~L~~ng 187 (489)
-|+.+|.+.|+++|+++|+|.|+|.++.
T Consensus 165 ~e~~~i~~~l~~lA~l~pgv~~~l~~~r 192 (201)
T 3fv5_A 165 FSVSRLTHVLKAKAVLCPGVEITFKDEI 192 (201)
T ss_dssp CCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 4799999999999999999999999865
No 30
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}
Probab=82.29 E-value=2 Score=42.98 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=65.5
Q ss_pred cceEEEEEcCeEEEEEeCCceEEEEehhhHHHHHHHHHHHhhcC-ccC-CCCCceEe------e----------------
Q psy8492 276 NKLVIAQVDKKYIVVLLNKTLLVAFDQHAVDERIRVEKLFSYGA-FLS-HPITPCVL------N---------------- 331 (489)
Q Consensus 276 ~~~vIgQl~~~YILae~~dgLLvLIDQHAAHERIlyErL~~~~~-i~s-QLLiPl~l------~---------------- 331 (489)
+..++|-++..+.|+|.+..| ||||-.+.-+-.-|+.....++ +.. +|-.|+.+ .
T Consensus 60 ~~tfVG~VD~~~aLiQ~~tkL-YLvd~~~l~~ElFYQ~~L~~FgNfg~i~L~~P~~L~dLl~~al~~~~~~~~e~d~~~~ 138 (284)
T 3rbn_A 60 NHSFVGCVNPQWALAQHQTKL-YLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKE 138 (284)
T ss_dssp TCEEEEESSSSEEEEEETTEE-EEEEHHHHHHHHHHHHHHHSTTCCEEEEEEEEEEHHHHHHHHHTSGGGTCCTTSCCHH
T ss_pred hCeEEEEECCCeeEEEeCCeE-EEecHHHHHHHHHHHHHHHHhcCCCeEeeCCCCCHHHHHHHHhhcccccCCcccccHH
Confidence 468899999999999999997 9999999999999998888762 222 12222211 0
Q ss_pred -cCHHHHHHHHHHHHHHhh-cCeEEEEeCCCcEEEEeecCcchhh
Q psy8492 332 -LTPQEINTLSNRQTCLQY-YGLEFEFKNTGKCVKVTHVPKCLFV 374 (489)
Q Consensus 332 -Ls~~E~~~Lee~~e~L~~-lGfeie~fG~~~ti~VrsVPalL~~ 374 (489)
+...-++.|.++.+.|.+ +|++|+..| .+.++|.+|.+
T Consensus 139 ~~~e~i~~~L~~~~eML~EYFsi~Id~~g-----~L~slPlLl~~ 178 (284)
T 3rbn_A 139 GLAEYIVEFLKKKAEMLADYFSLEIDEEG-----NLIGLPLLIDN 178 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEECTTS-----EEEEEEECSTT
T ss_pred HHHHHHHHHHHHHHHHHHhheeEEEeCCC-----cEEEechhhcC
Confidence 112223467777787765 788886444 37899998854
No 31
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=77.71 E-value=0.075 Score=58.32 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEeCCcccchhhhhhccHHHHHH----HHccHHHhcccCcc-ccCCeEEEEEEeCCCCC
Q psy8492 162 RKYCEDNIKVDNNLERKTKYCLEANEQKPEEAEEIAIEQLEVAK----DIYAMKMVENFPEH-KREDYEVDGYISREPIS 236 (489)
Q Consensus 162 ~~h~~d~vkRlALa~p~v~F~L~~ngr~l~~~~~~s~~l~eRIa----~IlG~~fa~~li~I-e~~~l~I~G~Is~P~~s 236 (489)
..+|.+.|+++|+++|++.|+|.++++...........+.+++. .++|.++...++.+ ..++++|.||++. .++
T Consensus 189 ~~~I~~~L~~lAllnpgv~I~L~d~~~~~~~~~gg~~~L~~~~~~i~p~~~G~~~~~~eval~~~~~~~i~sFvN~-i~T 267 (621)
T 2q2e_B 189 RQSIYEYLKATAIVNPHARITLIDPDGNEEVFERATDKMPEPAEEILPHPEGIELGTLMKMLHYTERQKLAPFLRY-SFC 267 (621)
T ss_dssp SSSSHHHHHHHHHHCCSCEEEECCTTSCCEEEECCCCCCCCCCCCCCCCSTTCCHHHHHHHHHHCC-----CTTSS-SSC
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEECCceEEEeCCcccchhcccccccCCceeeccCeEEEEEeeCCCeEEEEEeCC-ccc
Confidence 37899999999999999999999998622111010112333333 46776666555555 5667899999988 555
Q ss_pred CC
Q psy8492 237 QP 238 (489)
Q Consensus 237 R~ 238 (489)
+.
T Consensus 268 ~~ 269 (621)
T 2q2e_B 268 KI 269 (621)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 32
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=51.49 E-value=9.1 Score=35.81 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEeC
Q psy8492 161 ERKYCEDNIKVDNNLERKTKYCLEAN 186 (489)
Q Consensus 161 E~~h~~d~vkRlALa~p~v~F~L~~n 186 (489)
|+.+|.+.|+++|+++|+|.|.|.+.
T Consensus 156 ~~~~l~~rlrelA~ln~gv~i~l~de 181 (198)
T 3ttz_A 156 NYETLQQRIRELAFLNKGIQITLRDE 181 (198)
T ss_dssp CHHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEEee
Confidence 68899999999999999999999864
No 33
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=43.16 E-value=15 Score=39.51 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=46.4
Q ss_pred HH-HHHHHHHHHhhhcCCCceEEEEeCCcccchhhhhh----ccHHHHHHHHccHHHhcccCcc--ccCCeEEEEEEeCC
Q psy8492 161 ER-KYCEDNIKVDNNLERKTKYCLEANEQKPEEAEEIA----IEQLEVAKDIYAMKMVENFPEH--KREDYEVDGYISRE 233 (489)
Q Consensus 161 E~-~h~~d~vkRlALa~p~v~F~L~~ngr~l~~~~~~s----~~l~eRIa~IlG~~fa~~li~I--e~~~l~I~G~Is~P 233 (489)
|+ .++.+.++++|+++|++.|+|.++|+........+ ....+.+...+|.++...+..+ ....++|.||++..
T Consensus 182 e~~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~Gi~~~~~l~~~~~~~~~~~l~~fl~~~ 261 (530)
T 2zbk_B 182 KAKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNE 261 (530)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECTTSCEEEECCCCCCCCCCCCCCCCCGGGCCHHHHHHHHTTCSSCCBHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHCCCcEEEEEECCCeEEEecCccccccCCcceeccCCCChhHHHHHHHHhccCCCceeHhhhcCc
Confidence 45 89999999999999999999999887221110000 0112233345566655555544 33345788888775
Q ss_pred C
Q psy8492 234 P 234 (489)
Q Consensus 234 ~ 234 (489)
-
T Consensus 262 f 262 (530)
T 2zbk_B 262 F 262 (530)
T ss_dssp S
T ss_pred c
Confidence 4
No 34
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=39.58 E-value=12 Score=31.57 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhcCeEEE
Q psy8492 338 NTLSNRQTCLQYYGLEFE 355 (489)
Q Consensus 338 ~~Lee~~e~L~~lGfeie 355 (489)
..+......|++.|+...
T Consensus 46 ~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 46 SSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCEEe
Confidence 345667778889998654
No 35
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=34.52 E-value=25 Score=36.98 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCCcccch---hhhh-hccHHHHHHHHccHHHhcccCcc--ccCCeEEEEEEeCCC
Q psy8492 163 KYCEDNIKVDNNLERKTKYCLEANEQKPEE---AEEI-AIEQLEVAKDIYAMKMVENFPEH--KREDYEVDGYISREP 234 (489)
Q Consensus 163 ~h~~d~vkRlALa~p~v~F~L~~ngr~l~~---~~~~-s~~l~eRIa~IlG~~fa~~li~I--e~~~l~I~G~Is~P~ 234 (489)
.+|.+.|+++|+++|++.|.|.++|+.... .+.. ..-........+|.++...+..+ ....++|.||++.+-
T Consensus 186 ~~I~~~l~~~al~~p~v~i~l~~~~~~~~~~~r~~~~lp~~~~~~~p~~~G~~l~~~~~~~~~~~~~~~~~~fl~~~f 263 (471)
T 1mu5_A 186 SRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEF 263 (471)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCCCCCCCCCGGGCCHHHHHHHSTTCSSCCBHHHHHTTSS
T ss_pred HHHHHHHHHHHhHCCCeEEEEEECCceEEEecccccccCCccceeecCCCchhHHHHHHHHHhcCCCcchHHhhhccc
Confidence 799999999999999999999999872111 1000 00011223334565555555555 344458899998763
No 36
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=32.52 E-value=20 Score=25.17 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=13.7
Q ss_pred hhhhhhHHHHHHHHHHHH
Q psy8492 83 ASVTSLKSKIQQLKEENR 100 (489)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~ 100 (489)
.++..+|.|||+|+.+.-
T Consensus 4 ~~i~avKkKiq~lq~q~d 21 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNY 21 (37)
T ss_dssp --CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 467899999999997753
No 37
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=32.10 E-value=27 Score=33.16 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEeC
Q psy8492 161 ERKYCEDNIKVDNNLERKTKYCLEAN 186 (489)
Q Consensus 161 E~~h~~d~vkRlALa~p~v~F~L~~n 186 (489)
|+.+|.+.|+++|+.+|+|.|.|...
T Consensus 183 ~~~~l~~rlrelA~ln~gv~i~l~de 208 (220)
T 4duh_A 183 EYEILAKRLRELSFLNSGVSIRLRDK 208 (220)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 57889999999999999999999854
No 38
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.14 E-value=56 Score=23.22 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.1
Q ss_pred hhHHHhhhhhhhhHHHHHHHHHHH
Q psy8492 76 EMVKETRASVTSLKSKIQQLKEEN 99 (489)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ 99 (489)
.-+.||+..|..|..|+++|++|.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999985
No 39
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.96 E-value=98 Score=23.72 Aligned_cols=33 Identities=36% Similarity=0.679 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHHHH---------hhHHHHHHHHHHhhc
Q psy8492 84 SVTSLKSKIQQLKEENRK---------RKRKDIKKIATSFHN 116 (489)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 116 (489)
.|.+|+..++.|+.||.+ +-|+++..|...+..
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666665543 456777777776654
No 40
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=26.32 E-value=42 Score=27.97 Aligned_cols=42 Identities=43% Similarity=0.548 Sum_probs=36.3
Q ss_pred HHhhhccceeccCCCCCchhhhHHHhhhhhhhhHHHHHHHHHHHHHhh
Q psy8492 56 REVKRSEMVTASHSDPSPRNEMVKETRASVTSLKSKIQQLKEENRKRK 103 (489)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (489)
-.|+|-|-++|+ |-.|-.+.-|-..-.|.|..||.||.|+.|
T Consensus 41 ~vv~RQEAl~aa------RlRMQEeldAqAe~~keKQkqlEEeKR~qk 82 (89)
T 2q2f_A 41 VVVKRQEALAAA------RLKMQEELNAQVEKHKEKLKQLEEEKRRQK 82 (89)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888886 788999999999999999999999987765
Done!