RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8492
(489 letters)
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 74.9 bits (184), Expect = 9e-17
Identities = 40/44 (90%), Positives = 44/44 (100%)
Query: 440 RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKP 483
RYYYDKNIIHKTAGKRYVYRFVCDLQ+LLGY+PEELHAM+D+KP
Sbjct: 99 RYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKP 142
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 110
Score = 64.9 bits (158), Expect = 1e-13
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 440 RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEELHAMVDLKPDKK 486
RYYYD ++I K GKR+VY+FVCDL+TL+GYS EL+ +V KK
Sbjct: 60 RYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVIECEQKK 106
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 52.2 bits (125), Expect = 2e-08
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 279 VIAQVDKKYIVVLLNKTLLVAFDQHAVDERIRVEKL-FSYGAFLSHP-ITPCVLNLTPQE 336
V+ V ++ + + +R +L + P + P L ++ +E
Sbjct: 6 VLTIVHSDCALLE-RDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEE 64
Query: 337 INTLSNRQTCLQYYGLEFEFKNTGKCVKVTHVPKCLFVKVHKEEDRIRE 385
+ L Q+ L G++F+ + V + VP L + + I E
Sbjct: 65 KSALEKAQSALAELGIDFQSDA--QHVTIRAVPLPL--RQQNLQILIPE 109
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 44.8 bits (106), Expect = 8e-07
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 440 RYYYDKNIIHKTAGKRYVYRFVCD 463
RYYYDKNII K +G+++VY+FV
Sbjct: 61 RYYYDKNIIRKVSGQKFVYKFVSY 84
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 44.8 bits (106), Expect = 9e-07
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKTAGKRYVYRFVCDLQTLLGYSPEEL 475
+ K +R RYYY I+ + +R VY+F + G+ ++L
Sbjct: 51 DRMTYEKLSRALRYYYKTGILERV-DRRLVYKFGKNAH---GWQEDKL 94
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 45.3 bits (107), Expect = 2e-06
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 440 RYYYDKNIIHKTAGKRYVYRFVCDLQTL 467
RYYY KNII K G+++VY+FV + L
Sbjct: 63 RYYYVKNIIKKVNGQKFVYKFVSYPEIL 90
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 40.6 bits (95), Expect = 3e-05
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 440 RYYYDKNIIHKTAGKRYVYRF 460
RYYYDKNI+ K GKRY Y+F
Sbjct: 65 RYYYDKNIMTKVHGKRYAYKF 85
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets
transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.8 bits (93), Expect = 5e-05
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 430 PNVCLSKFTR--RYYYDKNIIHKT-AGKRYVYRFVC 462
P + K +R R YY K II K +R VY+FV
Sbjct: 52 PAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVH 87
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 37.5 bits (87), Expect = 3e-04
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 440 RYYYDKNIIHKTAGKRYVYRFVCDL 464
R Y + K K+ Y+F ++
Sbjct: 65 RNYGKTGEVKKVK-KKLTYQFSGEV 88
>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 33.8 bits (77), Expect = 0.010
Identities = 16/104 (15%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 218 EHKREDYEVDGYISREPISQP---QYQNIYINKRLVTNTILHDTINKLLVK--------S 266
E + D + G+++ + P + Q Y+N R++ + +++ I + +
Sbjct: 12 EWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPA 71
Query: 267 FYLNITKESNKLVIAQVDKKYIVVLLNKTLLVAFDQHAVDERIR 310
F L + + +++ + K+ V L+ F V ++
Sbjct: 72 FVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQ 115
>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo
sapiens), shp-2 [TaxId: 9606]}
Length = 307
Score = 30.6 bits (68), Expect = 0.38
Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 81 TRASVTSLKSKIQQLKEENRKRKRKDIKKIATSFHNKRNLQYLDERPKITHSNGKNDQNY 140
TR + ++S++++L + K + F LQ + + + G+ +N
Sbjct: 1 TRINAAEIESRVRELSKLAETTD-KVKQGFWEEF---ETLQQQECKLLYSRKEGQRQENK 56
Query: 141 RKQRKEQSLPTEQSNVTLNNERKYCEDNIKVDNN 174
K R + LP + + V L++ + ++ N
Sbjct: 57 NKNRYKNILPFDHTRVVLHDGDPNEPVSDYINAN 90
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 28.8 bits (64), Expect = 0.73
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 196 IAIEQLEVAKDIYAMKMVENFPEHKREDYEVDGYISREPI-----SQPQYQNIYINKRLV 250
I QL + + + + + + + G+IS+ S Q +IN+R
Sbjct: 9 IPFVQLPPSDSVCEEYGL-SCSDALHNLFYISGFISQ-CTHGVGRSSTDRQFFFINRRPC 66
Query: 251 TNTILHDTINK 261
+ +N+
Sbjct: 67 DPAKVCRLVNE 77
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 396
Score = 29.9 bits (66), Expect = 0.77
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 88 LKSKIQQLKEENRKRKRKDIKKIATSF 114
L IQ+L +E R R DI++ +F
Sbjct: 6 LDKAIQKLHDEGRYRTFIDIEREKGAF 32
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 26.7 bits (58), Expect = 4.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 182 CLEANEQKPEEAEEIAIEQLEVAKDI 207
L+ + + A EIA LE A +I
Sbjct: 141 ALKKHAGESMSASEIARAALETAGEI 166
>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease
spirochete (Borrelia burgdorferi), different strains
[TaxId: 139]}
Length = 164
Score = 26.2 bits (58), Expect = 6.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 85 VTSLKSKIQQLKEENRKRKRKDIKKIATSFHNK 117
+ K+ LK E K K K+ +T F NK
Sbjct: 65 SDLIAEKLNVLKNEELKEKIDTAKQCSTEFTNK 97
>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 25.6 bits (56), Expect = 7.2
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 348 QYYGLEFEFKNTGKCVKVTHVPKCLFVKVHKEEDRIRENQTSREP 392
Y+G++ TGK V + + + + I++ + +
Sbjct: 70 AYFGMDHNVDQTGKAVIINKTSNTRIPEQ-RFSEHIKDEKNTEFQ 113
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.7 bits (58), Expect = 7.7
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 87 SLKSKIQQL-----KEENRKRKRKDIKKIATSFHNKRNL 120
L I + KE KR K++ I + F + L
Sbjct: 4 GLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKAL 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.372
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,748,934
Number of extensions: 83791
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 30
Length of query: 489
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 400
Effective length of database: 1,185,626
Effective search space: 474250400
Effective search space used: 474250400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.5 bits)