Query psy8497
Match_columns 2355
No_of_seqs 381 out of 2875
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 20:24:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04837 ATP-dependent RNA hel 100.0 2.3E-48 5E-53 457.7 37.2 357 21-386 7-376 (423)
2 PRK11776 ATP-dependent RNA hel 100.0 5.7E-48 1.2E-52 458.7 38.7 356 22-387 4-364 (460)
3 PRK10590 ATP-dependent RNA hel 100.0 4.3E-48 9.3E-53 461.1 37.7 357 22-387 1-367 (456)
4 KOG0330|consensus 100.0 2E-48 4.4E-53 448.8 30.5 365 14-388 53-423 (476)
5 PTZ00110 helicase; Provisional 100.0 1.5E-47 3.3E-52 467.0 39.5 357 17-382 125-494 (545)
6 KOG0331|consensus 100.0 2.8E-48 6E-53 466.7 31.4 355 23-383 92-459 (519)
7 PRK11634 ATP-dependent RNA hel 100.0 6.3E-47 1.4E-51 468.5 43.2 360 21-389 5-369 (629)
8 PRK11192 ATP-dependent RNA hel 100.0 4.9E-47 1.1E-51 446.8 39.7 352 23-382 2-362 (434)
9 COG0513 SrmB Superfamily II DN 100.0 1.8E-47 3.8E-52 464.0 36.7 360 21-387 28-396 (513)
10 PRK04537 ATP-dependent RNA hel 100.0 7.3E-47 1.6E-51 463.5 38.9 355 22-385 9-377 (572)
11 PLN00206 DEAD-box ATP-dependen 100.0 9.6E-47 2.1E-51 457.0 38.8 357 17-383 116-486 (518)
12 PRK01297 ATP-dependent RNA hel 100.0 2.1E-46 4.7E-51 447.8 40.0 360 19-387 84-457 (475)
13 KOG0338|consensus 100.0 1.7E-47 3.6E-52 449.5 28.4 373 21-399 180-561 (691)
14 PTZ00424 helicase 45; Provisio 100.0 4.3E-46 9.4E-51 431.1 37.8 359 21-388 27-390 (401)
15 KOG0328|consensus 100.0 3.3E-46 7.2E-51 417.9 26.8 368 16-392 21-393 (400)
16 KOG0333|consensus 100.0 8.9E-45 1.9E-49 428.1 32.6 357 18-383 241-635 (673)
17 KOG0345|consensus 100.0 3.2E-43 6.9E-48 412.3 30.1 351 22-380 4-372 (567)
18 KOG0326|consensus 100.0 9.7E-44 2.1E-48 402.4 21.2 370 18-398 81-455 (459)
19 KOG0343|consensus 100.0 4.4E-43 9.4E-48 414.9 26.9 368 7-383 54-433 (758)
20 KOG0342|consensus 100.0 4E-42 8.7E-47 405.2 29.1 358 16-381 76-446 (543)
21 KOG0340|consensus 100.0 4E-41 8.7E-46 385.8 30.4 362 20-391 5-380 (442)
22 KOG0335|consensus 100.0 4.3E-41 9.3E-46 400.5 28.2 355 19-382 71-454 (482)
23 TIGR03817 DECH_helic helicase/ 100.0 1.6E-39 3.5E-44 408.8 42.5 340 23-372 16-386 (742)
24 KOG4284|consensus 100.0 2.6E-41 5.7E-46 403.2 24.1 360 14-374 17-381 (980)
25 KOG0348|consensus 100.0 8.3E-41 1.8E-45 395.1 28.0 359 20-382 134-564 (708)
26 KOG0346|consensus 100.0 6E-40 1.3E-44 382.3 29.7 347 22-376 19-414 (569)
27 TIGR00614 recQ_fam ATP-depende 100.0 2.8E-39 6E-44 387.5 35.6 320 38-382 6-343 (470)
28 KOG0341|consensus 100.0 1.8E-41 4E-46 389.4 14.2 348 18-374 166-530 (610)
29 KOG0332|consensus 100.0 1.1E-39 2.4E-44 375.3 28.5 375 5-388 73-460 (477)
30 KOG0336|consensus 100.0 1.3E-39 2.7E-44 376.2 23.8 357 17-383 214-583 (629)
31 PRK02362 ski2-like helicase; P 100.0 2.7E-38 5.9E-43 396.9 34.1 336 22-372 1-397 (737)
32 KOG0384|consensus 100.0 3.4E-40 7.3E-45 413.2 16.3 344 42-398 369-835 (1373)
33 KOG0385|consensus 100.0 3.4E-39 7.3E-44 391.5 24.4 346 43-398 167-623 (971)
34 PLN03137 ATP-dependent DNA hel 100.0 5.7E-38 1.2E-42 399.5 36.1 327 32-382 448-797 (1195)
35 KOG0339|consensus 100.0 3.2E-38 6.8E-43 371.1 29.4 357 16-380 217-583 (731)
36 TIGR01389 recQ ATP-dependent D 100.0 1.2E-37 2.6E-42 382.1 35.4 318 39-382 9-341 (591)
37 PRK11057 ATP-dependent DNA hel 100.0 1E-37 2.2E-42 385.1 34.3 317 39-381 21-352 (607)
38 KOG0327|consensus 100.0 1.6E-38 3.5E-43 368.1 23.0 363 19-393 23-391 (397)
39 PRK00254 ski2-like helicase; P 100.0 7E-37 1.5E-41 383.4 36.5 337 23-373 2-389 (720)
40 KOG0347|consensus 100.0 9.1E-38 2E-42 370.2 20.5 368 14-391 173-589 (731)
41 KOG0334|consensus 100.0 2.7E-37 5.8E-42 386.5 25.4 361 16-384 359-732 (997)
42 PRK13767 ATP-dependent helicas 100.0 3.6E-36 7.8E-41 384.2 36.2 332 29-369 18-395 (876)
43 KOG0350|consensus 100.0 1.7E-36 3.7E-41 357.5 24.1 349 32-388 148-556 (620)
44 PRK01172 ski2-like helicase; P 100.0 3.3E-35 7.2E-40 365.5 34.9 342 23-380 2-387 (674)
45 KOG0386|consensus 100.0 1.5E-36 3.3E-41 375.7 16.3 345 42-395 393-859 (1157)
46 TIGR00580 mfd transcription-re 100.0 2.2E-34 4.8E-39 368.2 34.0 312 32-371 441-769 (926)
47 COG1201 Lhr Lhr-like helicases 100.0 4.2E-34 9.1E-39 358.6 33.5 329 32-371 12-361 (814)
48 PRK10689 transcription-repair 100.0 7.9E-34 1.7E-38 369.2 35.6 312 32-371 590-918 (1147)
49 KOG0344|consensus 100.0 9.1E-35 2E-39 348.9 24.8 357 18-382 128-505 (593)
50 KOG0337|consensus 100.0 4E-35 8.6E-40 341.4 16.1 359 21-388 20-384 (529)
51 PRK10917 ATP-dependent DNA hel 100.0 5.2E-33 1.1E-37 347.6 35.9 312 32-370 251-587 (681)
52 TIGR00603 rad25 DNA repair hel 100.0 9.9E-34 2.2E-38 353.5 29.2 321 43-382 255-617 (732)
53 COG1111 MPH1 ERCC4-like helica 100.0 3.2E-33 7E-38 332.2 31.7 331 41-377 13-486 (542)
54 TIGR00643 recG ATP-dependent D 100.0 1.1E-32 2.5E-37 341.8 35.0 313 32-370 225-564 (630)
55 PLN03142 Probable chromatin-re 100.0 7.5E-34 1.6E-38 364.4 23.4 323 43-375 169-602 (1033)
56 COG0514 RecQ Superfamily II DN 100.0 3.5E-33 7.6E-38 341.3 26.7 320 39-383 13-348 (590)
57 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.3E-32 7.1E-37 343.0 30.2 312 39-369 12-388 (844)
58 PHA02558 uvsW UvsW helicase; P 100.0 6.9E-32 1.5E-36 326.9 31.3 308 42-363 113-443 (501)
59 COG1204 Superfamily II helicas 100.0 3.8E-32 8.3E-37 342.5 30.1 329 32-369 20-405 (766)
60 PRK13766 Hef nuclease; Provisi 100.0 1.6E-31 3.5E-36 336.2 35.4 331 41-377 13-484 (773)
61 PRK09751 putative ATP-dependen 100.0 8.2E-32 1.8E-36 353.6 33.8 301 63-369 1-382 (1490)
62 PRK04914 ATP-dependent helicas 100.0 9.8E-31 2.1E-35 334.8 39.0 367 43-417 152-647 (956)
63 TIGR01587 cas3_core CRISPR-ass 100.0 1.8E-30 3.9E-35 298.3 28.4 296 60-372 1-336 (358)
64 COG1202 Superfamily II helicas 100.0 9.1E-31 2E-35 311.9 25.7 332 22-371 194-552 (830)
65 KOG0389|consensus 100.0 6.2E-32 1.3E-36 329.9 14.5 327 39-377 396-893 (941)
66 KOG0354|consensus 100.0 6.9E-30 1.5E-34 316.0 29.2 336 32-377 52-534 (746)
67 PHA02653 RNA helicase NPH-II; 100.0 1.3E-29 2.8E-34 316.5 30.7 314 46-374 167-516 (675)
68 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3E-29 6.5E-34 318.6 33.6 311 46-374 5-338 (819)
69 KOG0387|consensus 100.0 1.8E-30 4E-35 317.6 21.4 330 43-382 205-668 (923)
70 KOG0952|consensus 100.0 7.6E-30 1.6E-34 317.8 26.5 340 37-382 104-501 (1230)
71 PRK09401 reverse gyrase; Revie 100.0 2.8E-29 6.2E-34 327.6 32.9 301 32-358 69-430 (1176)
72 PRK14701 reverse gyrase; Provi 100.0 1.9E-29 4.2E-34 335.4 31.1 315 32-370 68-454 (1638)
73 COG1205 Distinct helicase fami 100.0 4.3E-29 9.4E-34 318.1 31.2 343 24-372 51-422 (851)
74 PRK11664 ATP-dependent RNA hel 100.0 8.1E-29 1.8E-33 314.7 31.7 311 46-374 8-341 (812)
75 KOG0329|consensus 100.0 1.6E-30 3.5E-35 289.5 13.9 319 21-383 41-367 (387)
76 TIGR03158 cas3_cyano CRISPR-as 100.0 4.9E-28 1.1E-32 282.9 29.3 293 47-357 1-357 (357)
77 COG1061 SSL2 DNA or RNA helica 100.0 4.5E-28 9.7E-33 290.8 27.5 300 42-358 35-375 (442)
78 TIGR01054 rgy reverse gyrase. 100.0 1.2E-27 2.6E-32 312.6 33.8 287 32-344 67-409 (1171)
79 PRK09200 preprotein translocas 100.0 6E-27 1.3E-31 295.3 32.0 328 39-376 75-545 (790)
80 PRK12898 secA preprotein trans 100.0 6.1E-27 1.3E-31 290.6 30.0 318 39-376 100-590 (656)
81 TIGR03714 secA2 accessory Sec 100.0 1.7E-26 3.7E-31 289.6 33.7 326 43-376 68-541 (762)
82 KOG0947|consensus 100.0 8.1E-27 1.8E-31 288.4 29.7 328 38-380 293-733 (1248)
83 KOG0351|consensus 100.0 2E-27 4.4E-32 303.1 24.7 330 32-384 253-604 (941)
84 KOG0388|consensus 100.0 3.2E-28 6.9E-33 293.0 13.7 324 43-376 567-1158(1185)
85 PRK05580 primosome assembly pr 99.9 5.8E-26 1.2E-30 284.7 33.3 317 43-380 144-557 (679)
86 KOG0951|consensus 99.9 1.7E-26 3.7E-31 290.0 25.3 340 39-382 305-712 (1674)
87 COG0556 UvrB Helicase subunit 99.9 1.9E-27 4.1E-32 283.6 15.1 263 191-472 385-657 (663)
88 KOG0392|consensus 99.9 4.3E-27 9.4E-32 295.2 18.3 338 43-389 975-1469(1549)
89 TIGR00963 secA preprotein tran 99.9 1.8E-25 3.9E-30 279.3 31.2 327 39-376 53-521 (745)
90 KOG0391|consensus 99.9 1.9E-26 4.1E-31 286.0 21.4 120 265-384 1276-1397(1958)
91 KOG1123|consensus 99.9 9.8E-27 2.1E-31 274.4 15.2 321 43-383 302-664 (776)
92 TIGR00595 priA primosomal prot 99.9 3.7E-25 8.1E-30 269.8 29.0 297 62-380 1-389 (505)
93 COG1200 RecG RecG-like helicas 99.9 1.6E-24 3.4E-29 266.3 31.3 315 32-373 252-592 (677)
94 KOG0948|consensus 99.9 7.8E-26 1.7E-30 275.1 18.6 313 43-371 129-538 (1041)
95 KOG0352|consensus 99.9 1.5E-25 3.3E-30 261.5 19.6 337 32-382 7-372 (641)
96 COG4581 Superfamily II RNA hel 99.9 1.4E-24 3.1E-29 276.7 29.9 325 34-369 111-534 (1041)
97 PRK11131 ATP-dependent RNA hel 99.9 2.8E-24 6.1E-29 279.8 31.4 308 45-374 76-413 (1294)
98 COG1197 Mfd Transcription-repa 99.9 4.2E-24 9.1E-29 272.8 29.4 321 23-371 574-912 (1139)
99 KOG0353|consensus 99.9 2.9E-24 6.3E-29 247.4 23.2 323 39-380 90-475 (695)
100 KOG0349|consensus 99.9 2.9E-25 6.3E-30 258.8 15.0 285 92-376 288-619 (725)
101 PRK09694 helicase Cas3; Provis 99.9 1.8E-23 4E-28 267.1 32.7 311 42-361 285-664 (878)
102 KOG0390|consensus 99.9 7E-24 1.5E-28 265.1 28.1 329 43-380 238-713 (776)
103 cd00268 DEADc DEAD-box helicas 99.9 7.8E-24 1.7E-28 224.6 21.4 196 24-220 1-202 (203)
104 PRK11448 hsdR type I restricti 99.9 4.1E-23 9E-28 269.4 30.4 312 42-360 412-801 (1123)
105 TIGR01967 DEAH_box_HrpA ATP-de 99.9 4.2E-23 9.1E-28 269.6 30.3 309 49-374 73-406 (1283)
106 PRK13104 secA preprotein trans 99.9 7E-22 1.5E-26 250.3 28.9 328 39-376 79-591 (896)
107 KOG0950|consensus 99.9 1.1E-22 2.4E-27 254.2 21.4 341 32-382 212-621 (1008)
108 KOG1000|consensus 99.9 1E-22 2.2E-27 241.2 18.5 317 41-369 196-598 (689)
109 PRK12904 preprotein translocas 99.9 2.3E-21 5E-26 245.2 29.8 327 39-376 78-577 (830)
110 COG4098 comFA Superfamily II D 99.9 3.7E-20 8E-25 214.0 29.8 317 42-380 96-424 (441)
111 PRK12906 secA preprotein trans 99.9 7E-21 1.5E-25 240.1 26.0 328 39-376 77-557 (796)
112 TIGR00631 uvrb excinuclease AB 99.8 2.5E-20 5.4E-25 233.6 22.2 200 264-467 441-651 (655)
113 COG1203 CRISPR-associated heli 99.8 9.7E-20 2.1E-24 230.8 27.4 323 43-374 195-552 (733)
114 COG1198 PriA Primosomal protei 99.8 1.1E-19 2.4E-24 228.4 27.3 322 42-382 197-613 (730)
115 PF00270 DEAD: DEAD/DEAH box h 99.8 2.8E-20 6.1E-25 190.4 17.1 158 45-205 1-165 (169)
116 PRK13107 preprotein translocas 99.8 1.3E-19 2.8E-24 229.6 26.2 328 39-376 79-595 (908)
117 COG0553 HepA Superfamily II DN 99.8 2.6E-20 5.6E-25 233.5 19.1 331 42-380 337-828 (866)
118 PRK12899 secA preprotein trans 99.8 6E-19 1.3E-23 224.0 30.6 138 32-174 73-228 (970)
119 KOG1002|consensus 99.8 1.7E-19 3.8E-24 213.5 20.0 112 265-376 638-753 (791)
120 COG1643 HrpA HrpA-like helicas 99.8 2.5E-18 5.3E-23 218.9 28.7 314 45-374 52-389 (845)
121 KOG1015|consensus 99.8 3.7E-19 7.9E-24 219.9 15.2 127 254-380 1129-1283(1567)
122 TIGR00348 hsdR type I site-spe 99.8 6.5E-18 1.4E-22 212.5 25.7 304 43-359 238-634 (667)
123 TIGR01407 dinG_rel DnaQ family 99.8 2.6E-17 5.6E-22 211.7 31.7 332 32-372 235-814 (850)
124 PRK05298 excinuclease ABC subu 99.8 2.7E-16 5.9E-21 197.7 35.7 138 265-403 446-593 (652)
125 KOG0949|consensus 99.8 2.5E-17 5.5E-22 205.6 23.3 160 43-206 511-675 (1330)
126 COG1110 Reverse gyrase [DNA re 99.8 1E-16 2.2E-21 202.2 27.6 285 32-343 71-416 (1187)
127 KOG0922|consensus 99.8 1.2E-16 2.7E-21 196.4 26.7 311 45-374 53-392 (674)
128 smart00487 DEXDc DEAD-like hel 99.8 3.3E-17 7.1E-22 166.4 18.2 184 38-223 3-191 (201)
129 KOG4439|consensus 99.7 2.1E-17 4.6E-22 202.1 19.4 113 264-376 745-862 (901)
130 KOG0920|consensus 99.7 1.8E-16 3.9E-21 202.1 26.5 321 43-374 173-546 (924)
131 COG4096 HsdR Type I site-speci 99.7 8.7E-17 1.9E-21 200.9 22.6 302 42-359 164-525 (875)
132 PRK12900 secA preprotein trans 99.7 1.1E-15 2.4E-20 195.2 24.3 124 251-376 582-715 (1025)
133 COG4889 Predicted helicase [Ge 99.7 3.1E-16 6.7E-21 193.7 13.0 343 19-369 137-585 (1518)
134 PRK12326 preprotein translocas 99.7 1.8E-14 3.9E-19 180.7 28.0 327 39-376 75-551 (764)
135 KOG0923|consensus 99.6 4.9E-15 1.1E-19 181.0 21.3 309 43-371 265-605 (902)
136 PRK07246 bifunctional ATP-depe 99.6 3.2E-14 6.9E-19 183.0 29.6 314 39-371 242-782 (820)
137 PRK13103 secA preprotein trans 99.6 1.2E-14 2.5E-19 185.5 24.7 327 39-376 79-595 (913)
138 KOG0924|consensus 99.6 7.5E-15 1.6E-19 179.3 21.9 312 41-372 354-697 (1042)
139 cd00079 HELICc Helicase superf 99.6 2E-15 4.4E-20 147.8 12.6 117 252-368 13-131 (131)
140 KOG0926|consensus 99.6 1.4E-14 3.1E-19 178.9 20.8 305 52-372 265-704 (1172)
141 PF04851 ResIII: Type III rest 99.6 4.5E-15 9.7E-20 152.7 12.5 149 43-203 3-183 (184)
142 PRK08074 bifunctional ATP-depe 99.6 1.9E-13 4.1E-18 178.0 30.4 118 254-372 742-893 (928)
143 cd00046 DEXDc DEAD-like helica 99.6 2.5E-14 5.5E-19 137.4 15.8 140 59-202 1-144 (144)
144 KOG0951|consensus 99.6 2.3E-14 5E-19 182.7 18.6 354 43-417 1143-1553(1674)
145 PRK12903 secA preprotein trans 99.6 4.8E-13 1E-17 170.0 26.3 327 39-376 75-543 (925)
146 KOG0953|consensus 99.6 1.3E-13 2.9E-18 166.9 20.2 271 61-381 194-485 (700)
147 KOG1016|consensus 99.5 5.1E-14 1.1E-18 172.8 16.7 117 266-382 720-857 (1387)
148 KOG4150|consensus 99.5 4.2E-14 9E-19 170.0 15.6 336 32-374 275-642 (1034)
149 PF00271 Helicase_C: Helicase 99.5 2E-14 4.4E-19 133.4 8.9 78 283-360 1-78 (78)
150 TIGR03117 cas_csf4 CRISPR-asso 99.5 4E-12 8.6E-17 159.9 31.0 115 253-370 459-614 (636)
151 KOG0383|consensus 99.5 8.1E-16 1.7E-20 192.4 -4.5 276 42-328 294-696 (696)
152 PF00176 SNF2_N: SNF2 family N 99.5 1.6E-13 3.4E-18 152.5 13.6 159 47-211 1-181 (299)
153 CHL00122 secA preprotein trans 99.5 2.9E-12 6.3E-17 163.5 25.8 128 39-174 73-209 (870)
154 PRK14873 primosome assembly pr 99.5 1.5E-12 3.2E-17 164.7 23.1 288 61-380 163-546 (665)
155 KOG0925|consensus 99.5 2.6E-12 5.6E-17 154.0 22.2 319 21-371 24-386 (699)
156 COG1199 DinG Rad3-related DNA 99.5 1.8E-11 3.9E-16 153.5 29.5 117 251-371 466-616 (654)
157 PRK12902 secA preprotein trans 99.4 2E-11 4.4E-16 156.0 28.5 128 39-174 82-218 (939)
158 smart00490 HELICc helicase sup 99.4 8.8E-13 1.9E-17 119.7 9.0 81 280-360 2-82 (82)
159 TIGR00604 rad3 DNA repair heli 99.4 1.7E-10 3.7E-15 146.9 30.8 116 254-371 512-673 (705)
160 PRK11747 dinG ATP-dependent DN 99.4 2.1E-10 4.6E-15 146.2 31.1 114 254-372 525-674 (697)
161 TIGR02562 cas3_yersinia CRISPR 99.3 1E-10 2.2E-15 151.3 22.1 312 43-361 408-881 (1110)
162 PRK12901 secA preprotein trans 99.2 4.5E-10 9.8E-15 145.1 23.3 110 264-376 627-745 (1112)
163 KOG1001|consensus 99.2 1.4E-10 3.1E-15 146.9 15.5 110 267-376 541-654 (674)
164 PF06862 DUF1253: Protein of u 99.2 1.3E-08 2.9E-13 124.2 29.5 293 89-381 36-424 (442)
165 PF02399 Herpes_ori_bp: Origin 99.1 6.6E-09 1.4E-13 132.6 24.0 293 61-372 52-388 (824)
166 COG0610 Type I site-specific r 98.8 1.3E-07 2.8E-12 124.8 22.3 301 59-370 274-651 (962)
167 PF07652 Flavi_DEAD: Flaviviru 98.8 3.2E-08 7E-13 106.4 10.4 134 58-205 4-139 (148)
168 smart00488 DEXDc2 DEAD-like he 98.7 1.1E-07 2.3E-12 110.8 14.5 71 43-113 8-84 (289)
169 smart00489 DEXDc3 DEAD-like he 98.7 1.1E-07 2.3E-12 110.8 14.5 71 43-113 8-84 (289)
170 PRK15483 type III restriction- 98.7 3E-06 6.5E-11 111.3 29.0 139 60-204 61-240 (986)
171 COG0653 SecA Preprotein transl 98.6 8.3E-07 1.8E-11 114.5 19.9 322 43-374 80-547 (822)
172 KOG0921|consensus 98.6 2.2E-07 4.9E-12 118.0 12.9 322 48-374 383-776 (1282)
173 KOG2340|consensus 98.6 2.4E-06 5.1E-11 105.1 19.3 337 42-379 215-675 (698)
174 KOG0952|consensus 98.5 4E-08 8.6E-13 126.5 1.5 265 43-316 927-1206(1230)
175 TIGR00596 rad1 DNA repair prot 98.2 2.2E-05 4.7E-10 102.7 17.2 67 138-204 8-74 (814)
176 PF13086 AAA_11: AAA domain; P 98.1 2.4E-05 5.2E-10 84.0 13.1 69 43-112 1-75 (236)
177 PF13872 AAA_34: P-loop contai 98.1 3E-05 6.4E-10 91.9 14.9 158 42-205 36-223 (303)
178 PF07517 SecA_DEAD: SecA DEAD- 98.1 1.8E-05 3.8E-10 92.4 12.0 128 39-174 74-210 (266)
179 KOG1133|consensus 97.9 0.0063 1.4E-07 78.2 29.4 110 258-371 623-779 (821)
180 PF13307 Helicase_C_2: Helicas 97.9 3.6E-05 7.8E-10 83.2 8.2 112 257-371 2-149 (167)
181 PF13604 AAA_30: AAA domain; P 97.8 7.2E-05 1.6E-09 82.9 10.2 123 43-201 1-130 (196)
182 COG3587 Restriction endonuclea 97.8 0.00066 1.4E-08 88.1 17.8 46 314-359 482-527 (985)
183 KOG1802|consensus 97.6 0.00026 5.6E-09 89.5 10.3 86 33-126 400-485 (935)
184 PF02562 PhoH: PhoH-like prote 97.5 8.5E-05 1.8E-09 84.1 4.9 140 41-201 2-155 (205)
185 PF09848 DUF2075: Uncharacteri 97.4 0.00041 8.9E-09 82.9 9.4 94 61-175 4-97 (352)
186 KOG0298|consensus 97.4 0.00028 6E-09 93.9 8.4 143 58-207 374-555 (1394)
187 PRK10875 recD exonuclease V su 97.4 0.0011 2.5E-08 85.1 13.2 142 44-201 153-301 (615)
188 TIGR01448 recD_rel helicase, p 97.3 0.0024 5.2E-08 83.5 14.8 128 39-201 320-452 (720)
189 PRK10536 hypothetical protein; 97.3 0.0012 2.5E-08 77.6 10.7 150 33-200 49-211 (262)
190 TIGR01447 recD exodeoxyribonuc 97.3 0.0023 5E-08 82.0 13.7 139 46-200 148-294 (586)
191 KOG1803|consensus 97.1 0.00065 1.4E-08 85.9 6.6 65 43-111 185-250 (649)
192 PF12340 DUF3638: Protein of u 97.0 0.0055 1.2E-07 71.0 12.5 108 39-151 20-144 (229)
193 PRK13889 conjugal transfer rel 96.8 0.011 2.4E-07 79.7 14.6 127 38-201 342-470 (988)
194 cd00009 AAA The AAA+ (ATPases 96.7 0.022 4.8E-07 56.0 12.4 39 58-100 19-57 (151)
195 TIGR02768 TraA_Ti Ti-type conj 96.7 0.012 2.6E-07 77.4 13.5 122 43-200 352-475 (744)
196 PF00580 UvrD-helicase: UvrD/R 96.7 0.0042 9E-08 70.4 8.2 122 44-171 1-125 (315)
197 PRK04296 thymidine kinase; Pro 96.6 0.004 8.8E-08 68.9 7.0 109 61-200 5-113 (190)
198 PRK08181 transposase; Validate 96.5 0.026 5.5E-07 66.7 13.2 118 45-204 89-211 (269)
199 smart00492 HELICc3 helicase su 96.5 0.014 3E-07 62.9 10.1 94 278-371 4-137 (141)
200 smart00491 HELICc2 helicase su 96.5 0.011 2.3E-07 63.7 9.3 95 277-371 3-138 (142)
201 PRK12723 flagellar biosynthesi 96.5 0.029 6.2E-07 69.4 14.0 124 60-209 176-304 (388)
202 PF13245 AAA_19: Part of AAA d 96.5 0.01 2.2E-07 58.0 7.9 60 51-110 2-62 (76)
203 PRK06526 transposase; Provisio 96.5 0.015 3.3E-07 67.8 10.7 113 51-205 91-204 (254)
204 COG1875 NYN ribonuclease and A 96.4 0.011 2.5E-07 72.1 9.7 142 37-200 222-386 (436)
205 PF13401 AAA_22: AAA domain; P 96.4 0.023 4.9E-07 57.4 9.9 19 58-76 4-22 (131)
206 KOG1132|consensus 96.4 0.016 3.5E-07 76.2 10.9 74 43-116 21-136 (945)
207 COG3421 Uncharacterized protei 96.3 0.033 7.2E-07 71.1 12.9 144 63-212 2-174 (812)
208 smart00382 AAA ATPases associa 96.3 0.01 2.2E-07 57.5 6.8 41 58-102 2-42 (148)
209 PRK13826 Dtr system oriT relax 96.2 0.046 1E-06 74.6 14.7 124 42-201 380-505 (1102)
210 PRK14974 cell division protein 96.1 0.057 1.2E-06 65.7 13.4 129 61-214 143-276 (336)
211 PF13871 Helicase_C_4: Helicas 96.0 0.016 3.5E-07 68.9 7.7 64 306-369 52-124 (278)
212 KOG0298|consensus 96.0 0.0069 1.5E-07 81.5 5.0 118 254-375 1210-1329(1394)
213 PHA02533 17 large terminase pr 95.9 0.082 1.8E-06 67.8 13.8 152 43-205 59-213 (534)
214 PRK05703 flhF flagellar biosyn 95.5 0.17 3.8E-06 63.2 14.5 126 59-212 222-352 (424)
215 TIGR00376 DNA helicase, putati 95.5 0.041 9E-07 71.6 9.4 68 42-113 156-224 (637)
216 PF03354 Terminase_1: Phage Te 95.4 0.063 1.4E-06 67.3 10.4 150 46-200 1-161 (477)
217 PRK11889 flhF flagellar biosyn 95.3 0.23 4.9E-06 62.3 14.3 128 59-213 242-374 (436)
218 PF00448 SRP54: SRP54-type pro 95.3 0.074 1.6E-06 60.0 9.2 128 61-213 4-136 (196)
219 cd01120 RecA-like_NTPases RecA 95.2 0.22 4.8E-06 50.9 11.8 38 61-102 2-39 (165)
220 KOG1131|consensus 95.2 0.061 1.3E-06 67.9 8.9 62 39-100 12-77 (755)
221 KOG1513|consensus 95.2 0.027 5.9E-07 73.1 6.0 158 40-205 261-457 (1300)
222 PF05970 PIF1: PIF1-like helic 95.2 0.078 1.7E-06 64.5 9.7 60 43-106 1-66 (364)
223 PRK14722 flhF flagellar biosyn 95.1 0.17 3.7E-06 62.5 12.3 128 58-213 137-269 (374)
224 KOG1805|consensus 94.8 0.039 8.4E-07 73.3 6.2 122 40-175 666-810 (1100)
225 TIGR01075 uvrD DNA helicase II 94.7 0.11 2.4E-06 68.1 10.1 110 42-172 3-114 (715)
226 cd01124 KaiC KaiC is a circadi 94.7 0.1 2.2E-06 56.0 8.1 49 61-114 2-50 (187)
227 PRK13709 conjugal transfer nic 94.6 0.29 6.2E-06 69.9 14.0 125 43-201 967-1099(1747)
228 PRK14712 conjugal transfer nic 94.6 0.21 4.7E-06 70.5 12.7 63 43-106 835-900 (1623)
229 PRK08116 hypothetical protein; 94.6 0.36 7.8E-06 57.0 12.7 39 60-103 116-154 (268)
230 COG1419 FlhF Flagellar GTP-bin 94.5 0.4 8.6E-06 60.0 13.3 127 58-211 203-332 (407)
231 PRK05707 DNA polymerase III su 94.5 0.24 5.3E-06 60.0 11.4 136 43-201 3-145 (328)
232 TIGR02760 TraI_TIGR conjugativ 94.5 0.26 5.7E-06 71.2 13.4 135 43-201 429-566 (1960)
233 PRK11773 uvrD DNA-dependent he 94.4 0.14 3.1E-06 67.3 10.0 110 42-172 8-119 (721)
234 PRK07952 DNA replication prote 94.3 0.55 1.2E-05 55.2 13.4 105 59-203 100-206 (244)
235 PRK00149 dnaA chromosomal repl 94.2 0.37 8E-06 60.2 12.5 106 59-205 149-256 (450)
236 PHA03333 putative ATPase subun 94.2 0.35 7.6E-06 63.6 12.5 145 45-203 171-333 (752)
237 PRK09183 transposase/IS protei 94.2 0.3 6.5E-06 57.3 10.9 47 52-103 96-142 (259)
238 PTZ00112 origin recognition co 94.1 0.51 1.1E-05 63.6 13.8 39 45-84 760-806 (1164)
239 PRK07764 DNA polymerase III su 94.1 0.34 7.4E-06 65.1 12.6 40 159-199 118-157 (824)
240 TIGR03420 DnaA_homol_Hda DnaA 94.1 0.32 6.9E-06 54.1 10.4 20 58-77 38-57 (226)
241 PRK06835 DNA replication prote 93.9 0.76 1.7E-05 56.1 14.0 106 58-203 183-290 (329)
242 PHA03368 DNA packaging termina 93.9 0.44 9.5E-06 62.6 12.5 135 58-204 254-392 (738)
243 PRK06921 hypothetical protein; 93.9 0.39 8.4E-06 56.7 11.2 43 58-104 117-159 (266)
244 COG1484 DnaC DNA replication p 93.9 0.33 7.2E-06 57.0 10.5 50 57-111 104-153 (254)
245 PRK10919 ATP-dependent DNA hel 93.8 0.13 2.8E-06 67.4 7.7 110 43-172 2-113 (672)
246 PRK12377 putative replication 93.7 0.55 1.2E-05 55.3 11.8 43 59-106 102-144 (248)
247 PF05876 Terminase_GpA: Phage 93.6 0.085 1.8E-06 67.8 5.7 123 43-174 16-147 (557)
248 PRK07003 DNA polymerase III su 93.6 0.53 1.1E-05 62.8 12.7 40 160-200 118-157 (830)
249 PTZ00293 thymidine kinase; Pro 93.6 0.3 6.5E-06 56.5 9.4 36 61-100 7-42 (211)
250 PRK11054 helD DNA helicase IV; 93.6 0.17 3.8E-06 66.6 8.5 117 32-171 185-302 (684)
251 PRK00411 cdc6 cell division co 93.5 0.78 1.7E-05 55.5 13.1 36 59-96 56-91 (394)
252 PF00004 AAA: ATPase family as 93.3 0.9 2E-05 45.7 11.1 16 61-76 1-16 (132)
253 TIGR00362 DnaA chromosomal rep 93.2 0.47 1E-05 58.3 10.7 37 60-98 138-174 (405)
254 PRK05642 DNA replication initi 93.1 0.35 7.5E-06 55.7 8.9 44 161-204 97-141 (234)
255 TIGR02760 TraI_TIGR conjugativ 93.1 0.42 9.2E-06 69.3 11.6 62 42-106 1018-1084(1960)
256 PRK00771 signal recognition pa 93.1 0.72 1.6E-05 58.3 12.2 126 61-213 98-228 (437)
257 PRK06893 DNA replication initi 93.1 0.37 8.1E-06 55.1 9.0 47 160-206 90-138 (229)
258 COG4626 Phage terminase-like p 92.8 0.45 9.7E-06 61.3 10.0 147 43-200 61-223 (546)
259 TIGR02881 spore_V_K stage V sp 92.8 0.46 9.9E-06 55.2 9.3 20 59-78 43-62 (261)
260 PRK12402 replication factor C 92.7 0.65 1.4E-05 54.5 10.6 40 160-200 124-163 (337)
261 PRK08769 DNA polymerase III su 92.7 1 2.3E-05 54.8 12.5 143 42-203 3-154 (319)
262 TIGR02928 orc1/cdc6 family rep 92.7 1 2.2E-05 53.9 12.3 25 59-84 41-65 (365)
263 TIGR01074 rep ATP-dependent DN 92.7 0.4 8.6E-06 62.3 9.6 110 43-172 1-112 (664)
264 PF13177 DNA_pol3_delta2: DNA 92.5 0.9 2E-05 49.8 10.7 43 160-203 101-143 (162)
265 PRK14958 DNA polymerase III su 92.5 0.69 1.5E-05 59.3 11.2 39 160-199 118-156 (509)
266 PRK14087 dnaA chromosomal repl 92.4 0.62 1.3E-05 58.8 10.5 107 59-203 142-250 (450)
267 PRK06731 flhF flagellar biosyn 92.4 2.1 4.6E-05 51.2 14.3 127 59-213 76-208 (270)
268 PRK08727 hypothetical protein; 92.4 0.75 1.6E-05 53.0 10.2 35 59-97 42-76 (233)
269 PRK12323 DNA polymerase III su 92.4 0.76 1.7E-05 60.6 11.3 42 159-201 122-163 (700)
270 PHA02544 44 clamp loader, smal 92.3 1.2 2.5E-05 52.5 12.0 40 161-200 100-139 (316)
271 TIGR03877 thermo_KaiC_1 KaiC d 92.3 1.5 3.3E-05 50.4 12.6 61 49-114 7-72 (237)
272 PRK12422 chromosomal replicati 92.3 0.68 1.5E-05 58.4 10.6 105 59-205 142-248 (445)
273 PRK08691 DNA polymerase III su 92.1 1.3 2.7E-05 59.0 12.9 40 159-199 117-156 (709)
274 KOG0989|consensus 92.1 0.43 9.4E-06 58.1 8.1 46 157-203 125-170 (346)
275 PRK14964 DNA polymerase III su 92.1 1.6 3.4E-05 56.2 13.4 40 159-199 114-153 (491)
276 PRK14088 dnaA chromosomal repl 92.0 1.3 2.9E-05 55.8 12.5 38 59-98 131-168 (440)
277 PRK14956 DNA polymerase III su 92.0 0.94 2E-05 58.0 11.3 19 61-79 43-61 (484)
278 COG1444 Predicted P-loop ATPas 91.9 2 4.4E-05 57.5 14.5 150 33-203 204-357 (758)
279 PRK08084 DNA replication initi 91.9 1.4 3E-05 50.9 11.7 35 59-97 46-80 (235)
280 PRK06645 DNA polymerase III su 91.8 1.5 3.2E-05 56.5 12.9 20 60-79 45-64 (507)
281 PRK13342 recombination factor 91.8 1.3 2.9E-05 54.9 12.2 17 60-76 38-54 (413)
282 PRK14949 DNA polymerase III su 91.8 0.55 1.2E-05 63.5 9.4 38 160-198 118-155 (944)
283 PRK12727 flagellar biosynthesi 91.6 1.3 2.9E-05 57.4 12.1 121 58-206 350-473 (559)
284 PRK08699 DNA polymerase III su 91.5 1.1 2.5E-05 54.4 10.9 143 44-201 2-152 (325)
285 PRK09112 DNA polymerase III su 91.5 0.99 2.2E-05 55.5 10.4 42 159-201 139-180 (351)
286 TIGR01547 phage_term_2 phage t 91.4 1.1 2.4E-05 54.8 10.7 142 61-213 4-151 (396)
287 PRK14960 DNA polymerase III su 91.3 1.5 3.3E-05 58.0 12.4 39 160-199 117-155 (702)
288 PRK07994 DNA polymerase III su 91.2 0.87 1.9E-05 60.0 10.1 38 160-198 118-155 (647)
289 COG2256 MGS1 ATPase related to 91.1 0.8 1.7E-05 57.4 9.1 47 59-112 49-95 (436)
290 PLN03025 replication factor C 91.0 2.3 5E-05 51.0 12.7 39 160-199 98-136 (319)
291 PRK14961 DNA polymerase III su 91.0 1.3 2.9E-05 54.1 10.8 39 160-199 118-156 (363)
292 TIGR00678 holB DNA polymerase 91.0 2.2 4.9E-05 46.9 11.6 115 60-198 16-132 (188)
293 COG1435 Tdk Thymidine kinase [ 90.9 1.1 2.5E-05 51.7 9.5 89 61-174 7-95 (201)
294 TIGR02785 addA_Gpos recombinat 90.8 0.52 1.1E-05 65.8 8.1 123 43-172 1-126 (1232)
295 COG3973 Superfamily I DNA and 90.7 1 2.2E-05 58.6 9.8 83 32-114 194-284 (747)
296 PRK05986 cob(I)alamin adenolsy 90.7 1.4 3.1E-05 50.6 10.1 143 57-211 21-167 (191)
297 PRK14952 DNA polymerase III su 90.7 1.2 2.6E-05 58.1 10.7 40 159-199 116-155 (584)
298 TIGR01073 pcrA ATP-dependent D 90.6 0.5 1.1E-05 62.3 7.4 110 42-172 3-114 (726)
299 PRK12726 flagellar biosynthesi 90.6 2.4 5.2E-05 53.4 12.6 121 59-206 207-331 (407)
300 PRK08903 DnaA regulatory inact 90.5 1.3 2.8E-05 50.0 9.6 42 161-203 90-132 (227)
301 PRK12724 flagellar biosynthesi 90.5 4 8.6E-05 52.0 14.5 122 61-212 226-354 (432)
302 PRK14723 flhF flagellar biosyn 90.5 1.9 4E-05 58.0 12.2 125 61-213 188-317 (767)
303 PF00308 Bac_DnaA: Bacterial d 90.5 1.7 3.6E-05 50.0 10.5 106 60-205 36-143 (219)
304 COG1474 CDC6 Cdc6-related prot 90.4 4.1 9E-05 50.6 14.4 26 59-85 43-68 (366)
305 TIGR02880 cbbX_cfxQ probable R 90.3 0.97 2.1E-05 53.7 8.7 18 59-76 59-76 (284)
306 PRK14955 DNA polymerase III su 90.3 2.5 5.3E-05 52.5 12.4 40 159-199 125-164 (397)
307 COG0470 HolB ATPase involved i 90.2 3.5 7.6E-05 48.1 13.0 40 160-200 108-147 (325)
308 PRK09111 DNA polymerase III su 90.2 1.5 3.3E-05 57.3 11.0 40 159-199 130-169 (598)
309 PF05127 Helicase_RecD: Helica 90.2 0.17 3.7E-06 57.1 2.3 123 62-203 1-124 (177)
310 PRK14086 dnaA chromosomal repl 90.1 1.1 2.4E-05 58.7 9.7 104 60-203 316-421 (617)
311 PF01637 Arch_ATPase: Archaeal 90.1 0.54 1.2E-05 51.2 5.9 56 143-202 104-165 (234)
312 PF06745 KaiC: KaiC; InterPro 90.0 0.94 2E-05 51.1 7.9 140 51-201 7-159 (226)
313 PRK13341 recombination factor 89.9 2.4 5.3E-05 56.7 12.7 39 161-204 109-147 (725)
314 PF13173 AAA_14: AAA domain 89.8 1.9 4.1E-05 45.0 9.3 37 161-200 61-97 (128)
315 PRK14969 DNA polymerase III su 89.7 2.2 4.8E-05 55.0 11.8 40 159-199 117-156 (527)
316 TIGR00708 cobA cob(I)alamin ad 89.7 2.6 5.7E-05 47.8 10.9 137 61-211 8-149 (173)
317 TIGR03499 FlhF flagellar biosy 89.7 1.5 3.3E-05 52.1 9.6 36 60-97 196-231 (282)
318 CHL00181 cbbX CbbX; Provisiona 89.6 1.4 3E-05 52.7 9.3 21 59-79 60-80 (287)
319 PRK06871 DNA polymerase III su 89.6 2.1 4.6E-05 52.4 10.9 134 44-201 3-146 (325)
320 PRK08533 flagellar accessory p 89.5 2.4 5.3E-05 49.0 10.8 51 58-113 24-74 (230)
321 PRK14965 DNA polymerase III su 89.4 1.8 3.9E-05 56.3 10.8 40 159-199 117-156 (576)
322 TIGR03015 pepcterm_ATPase puta 89.4 2.4 5.3E-05 48.4 10.7 34 43-76 23-61 (269)
323 PRK08939 primosomal protein Dn 89.4 3.7 8E-05 49.8 12.7 35 58-96 156-190 (306)
324 PRK07940 DNA polymerase III su 89.4 2.5 5.5E-05 52.9 11.6 50 160-211 116-165 (394)
325 PRK07471 DNA polymerase III su 89.3 2.6 5.7E-05 52.2 11.5 132 60-203 43-182 (365)
326 TIGR00064 ftsY signal recognit 89.2 4.8 0.0001 48.1 13.2 130 60-214 74-214 (272)
327 PF05729 NACHT: NACHT domain 89.2 3.1 6.7E-05 43.3 10.4 42 61-103 3-46 (166)
328 PF03237 Terminase_6: Terminas 89.2 4.9 0.00011 46.6 13.1 145 62-216 1-153 (384)
329 cd00561 CobA_CobO_BtuR ATP:cor 89.2 3.3 7.2E-05 46.4 11.2 135 61-211 5-147 (159)
330 cd00984 DnaB_C DnaB helicase C 89.1 1.4 3E-05 49.9 8.4 38 58-98 13-50 (242)
331 PRK14951 DNA polymerase III su 89.0 2.3 5E-05 56.0 11.3 39 160-199 123-161 (618)
332 PRK05580 primosome assembly pr 88.9 2 4.4E-05 56.8 10.9 78 265-343 190-268 (679)
333 TIGR01425 SRP54_euk signal rec 88.9 2.8 6.1E-05 53.2 11.6 129 61-213 103-235 (429)
334 PRK06995 flhF flagellar biosyn 88.8 5.3 0.00012 51.5 14.0 55 158-212 331-386 (484)
335 PRK00440 rfc replication facto 88.8 4.3 9.4E-05 47.4 12.3 38 161-199 102-139 (319)
336 cd03115 SRP The signal recogni 88.7 3.4 7.4E-05 44.8 10.7 54 160-213 81-135 (173)
337 PRK14721 flhF flagellar biosyn 88.6 4.8 0.0001 51.1 13.2 128 60-212 193-321 (420)
338 TIGR03881 KaiC_arch_4 KaiC dom 88.2 2.3 4.9E-05 48.1 9.3 59 51-114 8-71 (229)
339 PRK10917 ATP-dependent DNA hel 88.1 1.3 2.9E-05 58.3 8.6 80 265-344 310-394 (681)
340 TIGR00595 priA primosomal prot 88.0 2 4.3E-05 55.2 9.7 77 265-342 25-102 (505)
341 PRK10867 signal recognition pa 87.9 6.1 0.00013 50.3 13.6 130 61-214 103-237 (433)
342 PF02572 CobA_CobO_BtuR: ATP:c 87.8 3.8 8.2E-05 46.5 10.6 134 61-211 6-148 (172)
343 PRK14957 DNA polymerase III su 87.7 3.7 7.9E-05 53.6 11.8 40 159-199 117-156 (546)
344 PF05496 RuvB_N: Holliday junc 87.7 0.76 1.6E-05 54.1 5.3 18 60-77 52-69 (233)
345 COG0552 FtsY Signal recognitio 87.6 6.8 0.00015 48.6 13.2 129 61-213 142-280 (340)
346 PRK13833 conjugal transfer pro 87.5 1.7 3.7E-05 53.2 8.3 63 36-102 123-186 (323)
347 PF01443 Viral_helicase1: Vira 87.4 0.48 1E-05 52.7 3.4 13 61-73 1-13 (234)
348 PRK06067 flagellar accessory p 87.4 1.5 3.2E-05 50.0 7.2 60 50-114 12-76 (234)
349 PRK14954 DNA polymerase III su 87.4 3.8 8.3E-05 54.1 11.8 40 159-199 125-164 (620)
350 PRK07993 DNA polymerase III su 87.3 2.9 6.4E-05 51.2 10.2 144 43-210 2-155 (334)
351 KOG0738|consensus 87.3 1.9 4.1E-05 54.2 8.4 46 59-112 246-291 (491)
352 PRK06964 DNA polymerase III su 87.2 2.6 5.5E-05 52.1 9.6 37 44-80 2-43 (342)
353 cd01125 repA Hexameric Replica 87.2 7.6 0.00017 44.7 12.8 51 61-111 4-65 (239)
354 PRK14963 DNA polymerase III su 87.2 3.2 7E-05 53.5 10.8 23 61-84 39-61 (504)
355 TIGR02639 ClpA ATP-dependent C 87.1 4.9 0.00011 53.7 12.8 18 59-76 204-221 (731)
356 PRK11331 5-methylcytosine-spec 86.9 3.9 8.5E-05 52.3 11.2 33 44-76 180-212 (459)
357 TIGR00643 recG ATP-dependent D 86.9 1.8 3.9E-05 56.7 8.5 80 265-344 284-368 (630)
358 PRK14959 DNA polymerase III su 86.7 3.7 8E-05 54.3 11.1 21 60-80 40-60 (624)
359 cd01121 Sms Sms (bacterial rad 86.6 3.1 6.7E-05 51.8 9.9 95 50-174 69-171 (372)
360 PF01695 IstB_IS21: IstB-like 86.6 1.2 2.5E-05 49.9 5.8 48 51-103 40-87 (178)
361 PRK11823 DNA repair protein Ra 86.6 2.5 5.3E-05 53.6 9.3 96 50-175 67-170 (446)
362 PRK04195 replication factor C 86.6 3.5 7.6E-05 52.4 10.6 19 58-76 39-57 (482)
363 PRK04328 hypothetical protein; 86.5 4.2 9.2E-05 47.5 10.5 60 50-114 10-74 (249)
364 KOG2028|consensus 86.5 1.8 4E-05 53.8 7.7 49 60-112 164-212 (554)
365 PRK14962 DNA polymerase III su 86.4 3.4 7.4E-05 52.8 10.4 18 61-78 39-56 (472)
366 TIGR02397 dnaX_nterm DNA polym 86.4 4.5 9.8E-05 48.3 10.9 24 60-84 38-61 (355)
367 COG2109 BtuR ATP:corrinoid ade 86.0 6.8 0.00015 45.6 11.4 139 61-211 31-174 (198)
368 PF00265 TK: Thymidine kinase; 85.9 0.56 1.2E-05 52.6 2.9 36 61-100 4-39 (176)
369 PRK11034 clpA ATP-dependent Cl 85.9 4 8.8E-05 55.0 11.1 29 50-78 197-227 (758)
370 PRK13894 conjugal transfer ATP 85.9 2 4.4E-05 52.3 7.7 64 35-102 126-190 (319)
371 cd01122 GP4d_helicase GP4d_hel 85.8 2.3 5E-05 49.1 7.8 39 57-98 29-67 (271)
372 PF02456 Adeno_IVa2: Adenoviru 85.6 1.6 3.6E-05 53.4 6.7 51 61-114 90-143 (369)
373 PF03796 DnaB_C: DnaB-like hel 85.5 9.7 0.00021 44.3 12.7 45 51-98 8-56 (259)
374 PRK14950 DNA polymerase III su 85.5 6.8 0.00015 51.3 12.6 38 159-197 118-155 (585)
375 PF05621 TniB: Bacterial TniB 85.5 2.8 6.1E-05 51.2 8.6 16 59-74 62-77 (302)
376 PRK08451 DNA polymerase III su 85.4 4.8 0.0001 52.4 11.1 40 159-199 115-154 (535)
377 PRK05563 DNA polymerase III su 85.3 3.5 7.7E-05 53.6 9.9 20 60-79 40-59 (559)
378 TIGR00959 ffh signal recogniti 85.3 10 0.00022 48.4 13.5 130 61-214 102-236 (428)
379 PF05707 Zot: Zonular occluden 85.2 1.1 2.3E-05 50.2 4.7 24 61-84 3-27 (193)
380 PRK10416 signal recognition pa 85.2 19 0.00041 44.2 15.3 129 61-214 117-256 (318)
381 TIGR03878 thermo_KaiC_2 KaiC d 85.0 6.2 0.00013 46.5 10.9 51 59-113 37-90 (259)
382 PRK05896 DNA polymerase III su 84.6 4.6 0.0001 53.3 10.5 22 703-724 470-491 (605)
383 COG0593 DnaA ATPase involved i 84.6 4.1 8.9E-05 51.5 9.7 46 161-206 175-222 (408)
384 PRK06090 DNA polymerase III su 84.5 6.5 0.00014 48.3 11.1 136 43-202 3-148 (319)
385 TIGR02782 TrbB_P P-type conjug 84.5 2.8 6E-05 50.6 7.9 58 43-102 116-174 (299)
386 KOG0739|consensus 84.2 7.5 0.00016 47.9 11.1 126 53-222 156-298 (439)
387 COG2255 RuvB Holliday junction 84.1 3.8 8.3E-05 50.0 8.7 20 60-79 54-73 (332)
388 PRK14873 primosome assembly pr 84.0 5.4 0.00012 53.1 10.9 77 265-342 188-266 (665)
389 COG1110 Reverse gyrase [DNA re 84.0 2.2 4.8E-05 58.2 7.3 69 256-324 116-190 (1187)
390 PRK10865 protein disaggregatio 83.6 6.4 0.00014 53.7 11.5 18 59-76 200-217 (857)
391 cd01129 PulE-GspE PulE/GspE Th 83.5 2.4 5.2E-05 50.2 6.8 55 36-97 59-115 (264)
392 TIGR00580 mfd transcription-re 83.5 3.5 7.6E-05 56.6 9.1 79 266-344 501-584 (926)
393 PRK04841 transcriptional regul 83.2 11 0.00023 50.5 13.2 42 162-203 122-163 (903)
394 PF06733 DEAD_2: DEAD_2; Inte 83.2 0.95 2.1E-05 49.6 3.2 43 134-176 116-160 (174)
395 PRK14948 DNA polymerase III su 83.2 6.5 0.00014 52.0 11.1 21 59-79 39-59 (620)
396 KOG0701|consensus 83.0 0.88 1.9E-05 64.4 3.4 94 267-360 294-399 (1606)
397 CHL00095 clpC Clp protease ATP 82.9 7.5 0.00016 52.7 11.7 20 59-78 201-220 (821)
398 TIGR00614 recQ_fam ATP-depende 82.4 11 0.00023 47.9 12.2 120 265-384 51-184 (470)
399 PRK06305 DNA polymerase III su 82.4 8.8 0.00019 48.9 11.5 39 160-199 120-158 (451)
400 TIGR01389 recQ ATP-dependent D 82.3 12 0.00026 48.7 12.8 121 265-385 53-185 (591)
401 TIGR03346 chaperone_ClpB ATP-d 82.1 8.7 0.00019 52.4 11.9 18 59-76 195-212 (852)
402 PRK14971 DNA polymerase III su 81.6 11 0.00024 49.9 12.2 41 159-201 119-159 (614)
403 PHA00729 NTP-binding motif con 81.6 8.9 0.00019 45.3 10.2 17 60-76 19-35 (226)
404 TIGR03345 VI_ClpV1 type VI sec 81.5 11 0.00025 51.5 12.7 29 48-76 192-226 (852)
405 PRK07399 DNA polymerase III su 81.5 13 0.00029 45.3 12.1 40 160-201 123-162 (314)
406 PRK07413 hypothetical protein; 81.1 74 0.0016 40.6 18.3 147 61-211 22-177 (382)
407 PRK05973 replicative DNA helic 80.9 5.8 0.00013 46.9 8.5 52 58-114 64-115 (237)
408 PRK09354 recA recombinase A; P 80.7 5.1 0.00011 49.8 8.3 97 50-174 46-151 (349)
409 TIGR03880 KaiC_arch_3 KaiC dom 80.6 7.5 0.00016 44.1 9.0 59 51-114 4-67 (224)
410 PRK08058 DNA polymerase III su 80.6 14 0.00031 45.0 12.0 41 159-200 108-148 (329)
411 COG0630 VirB11 Type IV secreto 80.5 7.9 0.00017 47.2 9.8 56 42-102 126-182 (312)
412 COG2804 PulE Type II secretory 80.4 3.4 7.4E-05 53.2 6.9 39 45-84 243-283 (500)
413 PRK07133 DNA polymerase III su 80.3 10 0.00022 51.1 11.4 40 159-199 116-155 (725)
414 PRK06647 DNA polymerase III su 80.0 11 0.00025 49.3 11.5 23 61-84 41-63 (563)
415 PF14617 CMS1: U3-containing 9 79.9 1.5 3.2E-05 52.2 3.4 81 90-172 126-212 (252)
416 TIGR00635 ruvB Holliday juncti 79.7 6.2 0.00013 46.4 8.3 18 59-76 31-48 (305)
417 PRK07414 cob(I)yrinic acid a,c 79.6 8.4 0.00018 44.2 8.9 137 61-210 24-166 (178)
418 TIGR03600 phage_DnaB phage rep 79.6 4.3 9.3E-05 50.5 7.3 36 59-97 195-230 (421)
419 TIGR02012 tigrfam_recA protein 79.5 4.2 9.2E-05 49.9 7.1 51 50-104 41-97 (321)
420 PHA03372 DNA packaging termina 79.4 9 0.0002 50.7 10.1 134 58-203 202-338 (668)
421 cd00983 recA RecA is a bacter 79.3 5.2 0.00011 49.3 7.7 51 50-104 41-97 (325)
422 PF13191 AAA_16: AAA ATPase do 79.0 7.1 0.00015 41.7 7.8 39 46-85 6-50 (185)
423 PRK10436 hypothetical protein; 79.0 3.6 7.7E-05 52.6 6.5 40 44-84 202-243 (462)
424 TIGR00767 rho transcription te 79.0 4.2 9.1E-05 51.5 7.0 27 57-84 167-193 (415)
425 TIGR02237 recomb_radB DNA repa 78.5 6.4 0.00014 43.9 7.6 37 59-99 13-49 (209)
426 TIGR00416 sms DNA repair prote 78.1 9.5 0.00021 48.7 9.8 99 49-174 80-183 (454)
427 TIGR02524 dot_icm_DotB Dot/Icm 78.1 5.4 0.00012 49.5 7.5 27 57-84 133-159 (358)
428 PHA00350 putative assembly pro 78.0 11 0.00023 48.0 9.9 24 61-84 4-28 (399)
429 cd01130 VirB11-like_ATPase Typ 77.9 5.5 0.00012 44.3 6.8 40 42-82 8-48 (186)
430 KOG0741|consensus 77.8 13 0.00028 48.7 10.6 51 159-209 596-656 (744)
431 cd01393 recA_like RecA is a b 77.8 7.9 0.00017 43.5 8.1 50 51-100 7-63 (226)
432 KOG0740|consensus 77.7 9.1 0.0002 48.9 9.3 49 160-208 244-304 (428)
433 TIGR02533 type_II_gspE general 77.6 3.6 7.9E-05 52.8 6.1 40 44-84 226-267 (486)
434 CHL00176 ftsH cell division pr 77.5 12 0.00027 49.7 10.9 18 59-76 217-234 (638)
435 PRK03992 proteasome-activating 77.4 9.2 0.0002 47.7 9.2 18 59-76 166-183 (389)
436 PRK13900 type IV secretion sys 77.3 6.6 0.00014 48.2 7.9 41 57-102 159-199 (332)
437 PRK06904 replicative DNA helic 77.2 10 0.00022 48.8 9.7 49 59-111 222-270 (472)
438 PRK10689 transcription-repair 77.1 6.7 0.00015 55.1 8.7 80 265-344 649-733 (1147)
439 COG2909 MalT ATP-dependent tra 77.0 6.2 0.00013 53.5 7.9 41 163-203 131-171 (894)
440 TIGR03689 pup_AAA proteasome A 76.9 7.9 0.00017 50.3 8.7 25 58-83 216-240 (512)
441 cd01128 rho_factor Transcripti 76.8 3.4 7.4E-05 48.9 5.1 19 56-74 14-32 (249)
442 PRK14953 DNA polymerase III su 76.8 18 0.00039 46.8 11.7 19 61-79 41-59 (486)
443 TIGR01243 CDC48 AAA family ATP 76.8 7.1 0.00015 52.2 8.5 18 59-76 488-505 (733)
444 PRK09376 rho transcription ter 76.4 4.3 9.4E-05 51.4 6.0 27 57-84 168-194 (416)
445 KOG0733|consensus 76.2 15 0.00033 48.7 10.7 46 160-205 603-658 (802)
446 TIGR02538 type_IV_pilB type IV 76.0 4.6 0.0001 52.6 6.4 39 45-84 301-341 (564)
447 KOG1807|consensus 76.0 4.2 9E-05 54.4 5.9 73 40-112 375-449 (1025)
448 PRK06620 hypothetical protein; 76.0 5.8 0.00013 45.7 6.5 18 59-76 45-62 (214)
449 PF00437 T2SE: Type II/IV secr 75.5 3.5 7.6E-05 47.9 4.7 51 48-102 116-167 (270)
450 PF12846 AAA_10: AAA-like doma 75.4 4 8.6E-05 46.5 5.0 40 59-102 2-41 (304)
451 KOG0742|consensus 75.0 4.1 9E-05 51.5 5.3 17 59-75 385-401 (630)
452 KOG0991|consensus 75.0 6.6 0.00014 47.1 6.6 24 60-84 50-73 (333)
453 COG0210 UvrD Superfamily I DNA 74.8 6.2 0.00013 51.6 7.1 71 43-115 2-72 (655)
454 TIGR00665 DnaB replicative DNA 74.7 7.8 0.00017 48.4 7.7 47 49-98 182-232 (434)
455 TIGR02688 conserved hypothetic 74.3 9.5 0.00021 48.9 8.3 25 53-77 204-228 (449)
456 KOG0745|consensus 74.2 4.2 9.1E-05 51.8 5.1 20 58-77 226-245 (564)
457 TIGR02655 circ_KaiC circadian 74.1 13 0.00027 47.8 9.4 62 48-114 248-314 (484)
458 COG3972 Superfamily I DNA and 74.0 15 0.00032 47.8 9.7 79 32-114 152-230 (660)
459 COG3267 ExeA Type II secretory 74.0 9.8 0.00021 46.0 7.8 52 57-113 49-103 (269)
460 KOG1132|consensus 74.0 38 0.00082 46.6 13.7 89 254-344 551-656 (945)
461 TIGR02525 plasmid_TraJ plasmid 73.9 7 0.00015 48.9 7.0 37 58-96 149-185 (372)
462 TIGR01243 CDC48 AAA family ATP 73.7 19 0.00041 48.4 11.2 18 58-75 212-229 (733)
463 PRK13531 regulatory ATPase Rav 73.6 9.1 0.0002 49.7 7.9 26 51-76 32-57 (498)
464 COG4962 CpaF Flp pilus assembl 73.5 7.2 0.00016 48.6 6.8 59 39-102 153-212 (355)
465 COG1198 PriA Primosomal protei 73.1 11 0.00025 50.7 9.0 92 266-358 246-349 (730)
466 PRK00080 ruvB Holliday junctio 72.9 6.9 0.00015 47.2 6.4 18 59-76 52-69 (328)
467 PRK13851 type IV secretion sys 72.6 6.4 0.00014 48.7 6.2 41 57-102 161-201 (344)
468 cd03239 ABC_SMC_head The struc 72.5 16 0.00034 41.0 8.7 42 160-201 115-157 (178)
469 COG1200 RecG RecG-like helicas 72.4 9.6 0.00021 50.8 7.9 78 266-343 312-394 (677)
470 COG0513 SrmB Superfamily II DN 72.1 29 0.00062 45.1 11.9 107 268-381 102-223 (513)
471 COG0464 SpoVK ATPases of the A 72.0 16 0.00034 46.6 9.5 46 161-206 335-390 (494)
472 KOG0730|consensus 71.8 14 0.00031 49.1 9.2 140 19-206 428-582 (693)
473 COG1132 MdlB ABC-type multidru 71.6 10 0.00022 48.8 7.9 37 55-95 352-388 (567)
474 cd01131 PilT Pilus retraction 71.3 5.6 0.00012 44.9 4.9 35 61-98 4-38 (198)
475 PRK12608 transcription termina 70.9 4.3 9.3E-05 51.0 4.2 38 46-84 118-158 (380)
476 PHA00012 I assembly protein 70.6 32 0.00069 43.3 11.2 24 61-84 4-27 (361)
477 PRK14701 reverse gyrase; Provi 70.3 10 0.00023 55.0 8.2 60 265-324 122-187 (1638)
478 TIGR01241 FtsH_fam ATP-depende 70.0 16 0.00034 46.8 9.0 18 59-76 89-106 (495)
479 PRK05748 replicative DNA helic 70.0 11 0.00024 47.5 7.6 46 50-98 191-240 (448)
480 COG1702 PhoH Phosphate starvat 70.0 4 8.7E-05 50.6 3.6 58 39-98 124-181 (348)
481 COG1197 Mfd Transcription-repa 69.7 11 0.00024 52.6 7.9 75 266-340 644-723 (1139)
482 TIGR01420 pilT_fam pilus retra 69.7 9 0.0002 46.9 6.5 42 58-102 122-163 (343)
483 TIGR02858 spore_III_AA stage I 69.4 28 0.0006 42.0 10.3 29 51-80 101-132 (270)
484 PRK08506 replicative DNA helic 69.4 8.9 0.00019 49.1 6.6 57 50-111 180-240 (472)
485 TIGR02640 gas_vesic_GvpN gas v 69.3 8.5 0.00018 45.3 6.0 29 49-77 12-40 (262)
486 KOG0734|consensus 69.1 15 0.00032 48.1 8.3 59 148-208 385-453 (752)
487 KOG2543|consensus 68.9 26 0.00056 44.7 10.0 140 43-205 9-161 (438)
488 PRK08760 replicative DNA helic 68.8 15 0.00032 47.4 8.3 59 51-113 218-280 (476)
489 KOG2004|consensus 68.1 22 0.00047 48.1 9.6 108 44-189 416-533 (906)
490 TIGR00763 lon ATP-dependent pr 68.1 32 0.00069 46.8 11.5 18 59-76 348-365 (775)
491 cd00268 DEADc DEAD-box helicas 68.0 81 0.0018 34.8 12.8 76 264-343 68-153 (203)
492 PTZ00454 26S protease regulato 67.8 34 0.00074 43.3 11.0 19 58-76 179-197 (398)
493 PRK08840 replicative DNA helic 67.8 17 0.00037 46.7 8.5 38 59-99 218-255 (464)
494 PRK05564 DNA polymerase III su 67.7 41 0.00089 40.5 11.2 40 159-199 91-130 (313)
495 PRK11057 ATP-dependent DNA hel 67.6 43 0.00094 44.2 12.3 78 266-343 66-149 (607)
496 cd01123 Rad51_DMC1_radA Rad51_ 66.9 11 0.00024 42.7 6.0 49 51-99 7-62 (235)
497 PF07088 GvpD: GvpD gas vesicl 66.6 17 0.00037 46.4 7.9 38 58-100 10-47 (484)
498 COG2805 PilT Tfp pilus assembl 66.6 10 0.00022 46.9 6.0 24 61-85 128-151 (353)
499 PRK07004 replicative DNA helic 66.5 9.4 0.0002 48.8 6.0 36 59-97 214-249 (460)
500 TIGR01242 26Sp45 26S proteasom 66.4 27 0.00059 42.9 9.6 18 59-76 157-174 (364)
No 1
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-48 Score=457.74 Aligned_cols=357 Identities=31% Similarity=0.525 Sum_probs=307.2
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC------CCCCeE
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP------VQQPQT 93 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr------~qggRV 93 (2355)
..+|+++++++ +++.|...||..|+|+|.++|+.++.++++|+++|||+|||++|+++++..+.... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 46899999998 99999999999999999999999999999999999999999999999998886422 235789
Q ss_pred EEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecc
Q psy8497 94 IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDE 169 (2355)
Q Consensus 94 LILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDE 169 (2355)
|||+|+++|+.|+.+.+..+.... ++.+.+++|+..... ....++|||+||++|.+++....+.+..+.+|||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 999999999999999999998777 789999998865332 223489999999999999988888899999999999
Q ss_pred cchhcccChHHHHHHHHHhCCC--CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 170 ADKLINTGFVEDITWIYSQLPP--MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 170 AHRLkN~GF~SrLeeILs~Lpp--nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
||++.+.+|...+..++..++. ..+.+++|||++......+..++..+..+.+.........+.+.+....
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~------- 238 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS------- 238 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC-------
Confidence 9999999999999999998874 4567999999998888888888888877766544433333433332211
Q ss_pred hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 248 t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
...+...|..++......++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 239 -~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~r 317 (423)
T PRK04837 239 -NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAAR 317 (423)
T ss_pred -HHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhc
Confidence 1234566777776666679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcc
Q psy8497 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINL 386 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKL 386 (2355)
|||+|++++||+||+|.++..|+||+||+||.|+.|.+|+|+...+...+..+.+.+..
T Consensus 318 GiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~ 376 (423)
T PRK04837 318 GLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGH 376 (423)
T ss_pred CCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999998877777776554443
No 2
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.7e-48 Score=458.73 Aligned_cols=356 Identities=30% Similarity=0.506 Sum_probs=312.9
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.+|..+.+.+ +++.|..+||.+|+|+|.++++.++.++++|+++|||+|||++|+++++..+.. .....++|||+||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-KRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh-ccCCceEEEEeCCH
Confidence 5799999888 999999999999999999999999999999999999999999999999998863 22345799999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc
Q psy8497 101 EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 101 ALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~ 176 (2355)
+|+.|+.+.++.+....+++++..++|+..... ....++|+|+||++|.+++....+.+..+++|||||||++.+.
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~ 162 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDM 162 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCc
Confidence 999999999999987777889999999875432 2345899999999999999888888899999999999999999
Q ss_pred ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHH
Q psy8497 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256 (2355)
Q Consensus 177 GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaL 256 (2355)
+|...+..++..++...|+|++|||++.....+...++..+..+....... ...+.+.+..++.. .+...|
T Consensus 163 g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~--------~k~~~l 233 (460)
T PRK11776 163 GFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD-LPAIEQRFYEVSPD--------ERLPAL 233 (460)
T ss_pred CcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC-CCCeeEEEEEeCcH--------HHHHHH
Confidence 999999999999999999999999999988888888888887776654432 33355555444332 255667
Q ss_pred HHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccE
Q psy8497 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDL 336 (2355)
Q Consensus 257 LqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDT 336 (2355)
..++......++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 234 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 234 QRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 77777666679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccc
Q psy8497 337 VINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLD 387 (2355)
Q Consensus 337 VIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLK 387 (2355)
||+++.|.++..|+||+||+||.|..|.+++|+...+...+..+...+...
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~ 364 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRK 364 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999988877777776655443
No 3
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.3e-48 Score=461.14 Aligned_cols=357 Identities=30% Similarity=0.522 Sum_probs=308.4
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-----CCCCeEEE
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-----VQQPQTII 95 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-----~qggRVLI 95 (2355)
++|+.+.+++ |++.|.+.||..|+++|.++|+.++.++++|+.+|||+|||++|+++++..+.... ....++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 3688998888 99999999999999999999999999999999999999999999999999886422 12347999
Q ss_pred EcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 96 LVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
|+||++|+.|+.+.++.+.... ++.+..++|+..... ....++|||+||++|++++....+.+..+++|||||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 9999999999999999997766 788888888865432 22348999999999999988888889999999999999
Q ss_pred hhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhh
Q psy8497 172 KLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD 251 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ls 251 (2355)
+|.+.+|...+..++..++...|+|++|||++..+......++..+..+.+.........+.+.+..+... .
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~--------~ 231 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKK--------R 231 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHH--------H
Confidence 99999999999999999999999999999999888888888888887766554444444455554443321 2
Q ss_pred HHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 252 EEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 252 KkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
+...|..++......++||||+++..++.|++.|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+
T Consensus 232 k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 232 KRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred HHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 33455566666666799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccc
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLD 387 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLK 387 (2355)
|++++||+|++|.++..|+||+||+||.|..|.+++|+...+...+..+.+.+..+
T Consensus 312 p~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred ccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999988887777776654443
No 4
>KOG0330|consensus
Probab=100.00 E-value=2e-48 Score=448.84 Aligned_cols=365 Identities=28% Similarity=0.471 Sum_probs=336.2
Q ss_pred cccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCe
Q psy8497 14 VLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQ 92 (2355)
Q Consensus 14 ~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggR 92 (2355)
..-..+...+|.++.+.+ +++.|+..||..|+++|.++||.+++|++||..++||+|||.+|++||+..|.+.+ ....
T Consensus 53 ~~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-~~~~ 131 (476)
T KOG0330|consen 53 EMQTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-KLFF 131 (476)
T ss_pred hhhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-CCce
Confidence 344467788999999999 99999999999999999999999999999999999999999999999999999643 4588
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHH-hhcccCcCceEEEe
Q psy8497 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIK-LKYLNMDSVRLFIM 167 (2355)
Q Consensus 93 VLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLd-rr~LdLSkIdLLIV 167 (2355)
+|||+|+++|+.|+.+.++.++... ++++.++.|+.... ...+.++|||+||.+|.+++. .+.+.+..+.++|+
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 9999999999999999999998888 99999999997654 344569999999999999998 57788999999999
Q ss_pred cccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 168 DEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
|||++|++..|...+.+|+..+|...|++++|||++..+.++....+..|..+........+..+.|.+.+++...
T Consensus 211 DEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~---- 286 (476)
T KOG0330|consen 211 DEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD---- 286 (476)
T ss_pred chHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccc----
Confidence 9999999999999999999999999999999999999999998888999999999888888888899888887652
Q ss_pred hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 248 t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
+...|+.+|.......+||||++...++.++-.|...|+.+..|||.|++..|.-+++.|++|...|||||+++.+
T Consensus 287 ----K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSR 362 (476)
T KOG0330|consen 287 ----KDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASR 362 (476)
T ss_pred ----cchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcc
Confidence 3355888888777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
|||+|.|++||+||.|.+..+||+|+||++|.|..|.+|.|++.-+++.+.+|...+..++
T Consensus 363 GLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 363 GLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred cCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999988877666655
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.5e-47 Score=467.01 Aligned_cols=357 Identities=28% Similarity=0.473 Sum_probs=303.2
Q ss_pred CcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc----CCCCC
Q psy8497 17 NIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL----PVQQP 91 (2355)
Q Consensus 17 siDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek----r~qgg 91 (2355)
.+.++.+|+++.+++ |++.|...||.+|+|+|.++|+.+++++++|+++|||+|||++|+++++..+... ...++
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 457788999999888 9999999999999999999999999999999999999999999999998877632 12467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEe
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIM 167 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIV 167 (2355)
.+|||+||++|+.|+.+.+.+|.... .+++.+++|+..... ....++|||+||++|.+++......+..+.+|||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 89999999999999999999998766 788888888865432 2234899999999999999888888899999999
Q ss_pred cccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhcc-CCeeeccCCCc-cccccceEEEEeccCCCCC
Q psy8497 168 DEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV-DPLLIRPEDAT-RPLLGVKQLVALIPECKNP 245 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLr-dPvIIrVesee-~~~seVrQvVvqVpe~kn~ 245 (2355)
||||+|.+.+|...+..++..+++..|+|++|||++..+..+...++. .++.+.+.... .....+.+.+..+...
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~--- 360 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEH--- 360 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEech---
Confidence 999999999999999999999999999999999999888777777765 35554443322 1223344444443321
Q ss_pred cchhhhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec
Q psy8497 246 SLRYVDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323 (2355)
Q Consensus 246 sLt~lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS 323 (2355)
.+...|..++... ...++||||++++.++.|+..|...++.+..+||+|++.+|..+++.|++|.+.|||||+
T Consensus 361 -----~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd 435 (545)
T PTZ00110 361 -----EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD 435 (545)
T ss_pred -----hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc
Confidence 2334455555443 356999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 324 LAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 324 ALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
++++|||+|++++||+||+|.++..|+||+||+||.|..|.+++|+...+......+.+
T Consensus 436 v~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 436 VASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887766655544
No 6
>KOG0331|consensus
Probab=100.00 E-value=2.8e-48 Score=466.74 Aligned_cols=355 Identities=30% Similarity=0.522 Sum_probs=312.0
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh-----cCCCCCeEEEE
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-----LPVQQPQTIIL 96 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e-----kr~qggRVLIL 96 (2355)
.|..+.+.+ +.+.|+..||..|+|+|.++|+.++.|+++|..+.||+|||++|++|++.+|.. ....++.+|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 788888888 999999999999999999999999999999999999999999999999999985 14457889999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
+|||+||.|+...+.++.... .++..+++|+.....+ .+.++|+|+||.+|.+++....+.+..+.++|+|||++
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 999999999999999998887 6889999999876644 34499999999999999999999999999999999999
Q ss_pred hcccChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCc--cccccceEEEEeccCCCCCcchh
Q psy8497 173 LINTGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDAT--RPLLGVKQLVALIPECKNPSLRY 249 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee--~~~seVrQvVvqVpe~kn~sLt~ 249 (2355)
|++.+|..++..|+..+ ++..|+|++|||++.++..+...+|.++..+.+.... .....+.|++..++.. ..
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~-----~K 325 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDET-----AK 325 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHH-----HH
Confidence 99999999999999999 5566899999999999999999999988887776543 3444556666555532 12
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccccc
Q psy8497 250 VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGI 329 (2355)
Q Consensus 250 lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGL 329 (2355)
..++..++..+......||||||.+++.|+.|+..|...++.+..|||++++.+|..+|+.|++|.+.|||||+++++||
T Consensus 326 ~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 326 LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccC
Confidence 22233333333334557999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh
Q psy8497 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 330 DLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
|+|+|++||+||+|.+.+.|+||+||+||.|+.|.++.|+...+......+.+.
T Consensus 406 Di~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~ 459 (519)
T KOG0331|consen 406 DVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKV 459 (519)
T ss_pred CCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988777666655544
No 7
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.3e-47 Score=468.47 Aligned_cols=360 Identities=29% Similarity=0.505 Sum_probs=317.8
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
..+|.++.+++ |++.|..+||.+|+|+|.++|+.++.++++|+.+|||+|||++|+++++..+.. ....+++||||||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-~~~~~~~LIL~PT 83 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-ELKAPQILVLAPT 83 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh-ccCCCeEEEEeCc
Confidence 44699998888 999999999999999999999999999999999999999999999999988763 2345789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
++|+.|+.+.+..+....+++.++.++|+..... ....++|||+||++|++++....+.+..+.+|||||||.|++
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~ 163 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR 163 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhh
Confidence 9999999999999988878899999999875432 233489999999999999988888899999999999999999
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHH
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkea 255 (2355)
.+|...+..++..++...|++++|||++..+......++.++..+.+.........+.+.+..+.. ..+...
T Consensus 164 ~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~--------~~k~~~ 235 (629)
T PRK11634 164 MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG--------MRKNEA 235 (629)
T ss_pred cccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech--------hhHHHH
Confidence 999999999999999999999999999998888888999888777666554444455555444332 234566
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
|..++......++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|.++
T Consensus 236 L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 236 LVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 77777776667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccc
Q psy8497 336 LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHA 389 (2355)
Q Consensus 336 TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLa 389 (2355)
+||+||.|.++..|+||+||+||.|+.|.+|+|+...+...+..+.+.++..+.
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~ 369 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999998888888888776666553
No 8
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.9e-47 Score=446.78 Aligned_cols=352 Identities=32% Similarity=0.513 Sum_probs=302.6
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC---CCCCeEEEEcc
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP---VQQPQTIILAP 98 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr---~qggRVLILVP 98 (2355)
+|+.+.+.+ |++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.... ....++|||+|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 689999888 99999999999999999999999999999999999999999999999998886421 23468999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
+++|+.|+.+++..+.... ++.+..++|+..... ....++|||+||++|++++....+.+..+++|||||||++.
T Consensus 82 t~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 9999999999999998776 789999999875432 22347899999999999998888888999999999999999
Q ss_pred ccChHHHHHHHHHhCCCCceEEEEEeccChh-HHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHH
Q psy8497 175 NTGFVEDITWIYSQLPPMKQMLVVSATYSHD-NLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEE 253 (2355)
Q Consensus 175 N~GF~SrLeeILs~LppnrQILLLSATLS~E-ILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKk 253 (2355)
+++|...+..+...++...|++++|||+... +..+...++..+..+...........+.+.+..+... ..+.
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-------~~k~ 233 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL-------EHKT 233 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH-------HHHH
Confidence 9999999999999998889999999999854 4455566667777666554444444455554443321 2344
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
..|..++......++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 234 ~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~ 313 (434)
T PRK11192 234 ALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDD 313 (434)
T ss_pred HHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCC
Confidence 56666666656679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+++||+||.|.++..|+||+||+||.|..|.+++|+...+...+..+.+
T Consensus 314 v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 314 VSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred CCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998777666665543
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-47 Score=463.99 Aligned_cols=360 Identities=35% Similarity=0.581 Sum_probs=323.6
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCe-EEEEcc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQ-TIILAP 98 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggR-VLILVP 98 (2355)
...|.++.+.+ +++.|...||..|+|+|..++|.++.++++|+.++||+|||++|++|++..+......... +|||+|
T Consensus 28 ~~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 28 PPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 46799999888 9999999999999999999999999999999999999999999999999997731122222 999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
|++||.|+.+.+..+....+.+++.+++|+.....+ ...++|||+||.+|++++....+.+..+.++|+|||++|+
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmL 187 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRML 187 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhh
Confidence 999999999999999887767889999999765432 2239999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCcc--ccccceEEEEeccCCCCCcchhhhH
Q psy8497 175 NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATR--PLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 175 N~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~--~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
+.+|...+..|+..++...|++++|||++..+..+...++.+|..+.+..... ....+.+.+..+.... .+
T Consensus 188 d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~-------~k 260 (513)
T COG0513 188 DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE-------EK 260 (513)
T ss_pred cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH-------HH
Confidence 99999999999999999999999999999988899999999998887774444 6777888888876541 46
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...|..++......++||||+++..++.|+..|...|+++..|||+|++.+|.++++.|++|.++|||||+++++|||+|
T Consensus 261 ~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 261 LELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred HHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcc
Confidence 77888888877777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEccc-CHHHHHHHHHhhccc
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE-SLVKFHSLMGEINLD 387 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd-DVEeIEsLrReLKLK 387 (2355)
.+++||+||.|.++..|+||+||+||.|..|.+|.|+... +...+..+...+...
T Consensus 341 ~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 341 DVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred ccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999875 777777777664443
No 10
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.3e-47 Score=463.55 Aligned_cols=355 Identities=31% Similarity=0.539 Sum_probs=304.8
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC------CCCCeEE
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP------VQQPQTI 94 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr------~qggRVL 94 (2355)
.+|.++.+.+ |++.|...||..|+|+|.++|+.++.++|+|+.+|||+|||++|+++++..|.... ....++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999988 99999999999999999999999999999999999999999999999999886321 1246899
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhh-cccCcCceEEEecc
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLK-YLNMDSVRLFIMDE 169 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr-~LdLSkIdLLIVDE 169 (2355)
||+|+++|+.|+.+.+.+|+... ++.+..++|+..... ....++|||+||++|++++... .+.+..+++|||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999998776 789999999875432 2234799999999999888764 46688899999999
Q ss_pred cchhcccChHHHHHHHHHhCCC--CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 170 ADKLINTGFVEDITWIYSQLPP--MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 170 AHRLkN~GF~SrLeeILs~Lpp--nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
||+|.+.+|...+..++..++. ..|+|++|||++..+...+..++..+..+...........+.+.+....
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~------- 240 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA------- 240 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC-------
Confidence 9999999999999999999876 6799999999999888888888887766555443333334444443322
Q ss_pred hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 248 t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
...+...|+.++......++||||+++..++.|++.|...++.+..|||+|+..+|..+++.|++|+++|||||+++++
T Consensus 241 -~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~ar 319 (572)
T PRK04537 241 -DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAAR 319 (572)
T ss_pred -HHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhc
Confidence 1234566777777766779999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhc
Q psy8497 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLK 385 (2355)
|||+|.+++||+||.|+++..|+||+||+||.|..+.+|+|+...+...+..+...+.
T Consensus 320 GIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 320 GLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred CCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998877666666655443
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=9.6e-47 Score=457.03 Aligned_cols=357 Identities=27% Similarity=0.483 Sum_probs=306.3
Q ss_pred CcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc------CCC
Q psy8497 17 NIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL------PVQ 89 (2355)
Q Consensus 17 siDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek------r~q 89 (2355)
.+.++.+|+.+.+++ |++.|...||..|+|+|.++|+.++.++++|+++|||+|||++|+++++..+... ...
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 457899999999888 9999999999999999999999999999999999999999999999999877531 124
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEE
Q psy8497 90 QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLF 165 (2355)
Q Consensus 90 ggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLL 165 (2355)
++.+|||+||++|+.|+.+.++.+.... ++.++.++|+..... ....++|||+||++|.+++....+.+..+.+|
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 6789999999999999999999987766 677777887764332 23448999999999999998888889999999
Q ss_pred EecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCC
Q psy8497 166 IMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245 (2355)
Q Consensus 166 IVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~ 245 (2355)
||||||+|.+.+|...+..++..++ ..|++++|||++..+..+...++..+..+...........+.+...++...
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~--- 350 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETK--- 350 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccch---
Confidence 9999999999999999999998885 689999999999988888888888887777665554445556665555432
Q ss_pred cchhhhHHHHHHHHHhcCC--CCeEEEEEcccccHHHHHHHHHh-cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe
Q psy8497 246 SLRYVDEEKKLVQLLSQTP--FNQCVIFSNYQLRPEVICENLAN-ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322 (2355)
Q Consensus 246 sLt~lsKkeaLLqLLerl~--kgRVLVFSQTRKmAEiLADyLrE-rGIKVarLHGgMSqEERqeILErFRSGEIdVLVST 322 (2355)
.+...|..++.... ..++||||+++..++.|+..|.. .++.+..+||+|+..+|..+++.|++|+++|||||
T Consensus 351 -----~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaT 425 (518)
T PLN00206 351 -----QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVAT 425 (518)
T ss_pred -----hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEe
Confidence 23445666665432 25899999999999999999975 58999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh
Q psy8497 323 DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 323 SALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
+++++|||+|.+++||+||+|.++.+|+||+|||||.|..|.+++|+...+...+..+...
T Consensus 426 dvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~ 486 (518)
T PLN00206 426 GVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVAL 486 (518)
T ss_pred cHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988777666666544
No 12
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-46 Score=447.79 Aligned_cols=360 Identities=30% Similarity=0.544 Sum_probs=307.5
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC------CCC
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV------QQP 91 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~------qgg 91 (2355)
+....|..+.+.+ |++.|...||..|+++|.++++.+++|+++|+.+|||+|||++|+++++..+..... ...
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3456788888888 999999999999999999999999999999999999999999999999998875321 146
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC-----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEE
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFI 166 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLI 166 (2355)
++|||+||++|+.|+.+.++.+.... ++.+..++|+..... ....++|||+||++|+.++......+..+++||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 89999999999999999999997766 788999998754321 123489999999999988887777889999999
Q ss_pred ecccchhcccChHHHHHHHHHhCCC--CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCC
Q psy8497 167 MDEADKLINTGFVEDITWIYSQLPP--MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKN 244 (2355)
Q Consensus 167 VDEAHRLkN~GF~SrLeeILs~Lpp--nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn 244 (2355)
|||+|++.+.+|...+..++..++. ..|+|++|||+.......+..++..+..+.+.........+.+.+..+...
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-- 320 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS-- 320 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch--
Confidence 9999999999999999999988864 569999999999888888888888887776655444334444444333221
Q ss_pred CcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc
Q psy8497 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324 (2355)
Q Consensus 245 ~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA 324 (2355)
.+...|..++......++||||+++..++.|+..|...++.+..+||+|+..+|.++++.|++|++.|||||++
T Consensus 321 ------~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~ 394 (475)
T PRK01297 321 ------DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDV 394 (475)
T ss_pred ------hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccc
Confidence 23455666776666679999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccc
Q psy8497 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLD 387 (2355)
Q Consensus 325 LGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLK 387 (2355)
+++|||+|++++||+++.|.+..+|+||+|||||.|+.|.+|+|+..++...+..+...+..+
T Consensus 395 l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 395 AGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred cccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999888776666665554444
No 13
>KOG0338|consensus
Probab=100.00 E-value=1.7e-47 Score=449.53 Aligned_cols=373 Identities=25% Similarity=0.436 Sum_probs=328.7
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC--CCCCeEEEEc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP--VQQPQTIILA 97 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr--~qggRVLILV 97 (2355)
..+|.+++++- |+++|..+||..|+|+|..+||..+-|++++.||.||+|||.+|++|+|.+|.-.+ ....+|||||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 45899999987 99999999999999999999999999999999999999999999999999998533 3456899999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHh-hcccCcCceEEEecccch
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdr-r~LdLSkIdLLIVDEAHR 172 (2355)
||++|+.|+....+++..+. .+.+.+..|+-....+ ...++|||+||++|.+++.. ..+.+.++.+||+|||++
T Consensus 260 PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999999999998888 7999999999766533 33499999999999998876 567899999999999999
Q ss_pred hcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 173 LINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
|++.+|...+..|+..++...|.+++|||+...+..++..-|..|+.+.+.........+.|.++.+..... ...
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re-----~dR 413 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKRE-----GDR 413 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccc-----ccc
Confidence 999999999999999999999999999999999999999999999999998887777777776665543321 123
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...|..++......++|||+.+++.|..|.-.|--.|+++.-|||.+++.+|...++.|++.+++|||||+++.+||||+
T Consensus 414 ea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 414 EAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIE 493 (691)
T ss_pred HHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcc
Confidence 34455666666667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhc-cccccccCCCccch
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN-LDHAFNVGLVPDNL 399 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLK-LKLaLe~eIVPkgL 399 (2355)
.|.+||+|++|.+...|++|+||++|.|+.|..|.|+...+..++..+..... ..-.+...++|..+
T Consensus 494 gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~ 561 (691)
T KOG0338|consen 494 GVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEV 561 (691)
T ss_pred ceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHH
Confidence 99999999999999999999999999999999999999999999888876532 22334455555543
No 14
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.3e-46 Score=431.07 Aligned_cols=359 Identities=34% Similarity=0.567 Sum_probs=306.1
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
+.+|+.+.+.+ +.+.|...||..|+|+|.++++.++.++++|+++|||+|||++|+++++..+.. .....++|||+|+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~-~~~~~~~lil~Pt 105 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY-DLNACQALILAPT 105 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-CCCCceEEEECCC
Confidence 67899999888 999999999999999999999999999999999999999999999999987652 2346789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
++|+.|+.+.+..++... .+.+....|+..... .....+|+|+||+.|.+++....+.+..+++|||||+|++.+
T Consensus 106 ~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~ 184 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLS 184 (401)
T ss_pred HHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHh
Confidence 999999999999987655 677777777754321 223378999999999999888777889999999999999999
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHH
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkea 255 (2355)
.++...+..++..+++..|+|++|||++.........++..+..+...........+.+.+..+... ......
T Consensus 185 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 257 (401)
T PTZ00424 185 RGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKE-------EWKFDT 257 (401)
T ss_pred cchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChH-------HHHHHH
Confidence 8898899999999999999999999999888888888887776655544333344444444433321 123345
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
+..++......++||||+++..++.++..|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 258 l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 258 LCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 56666665667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 336 LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 336 TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
+||+++.|.+...|+||+|||||.|..|.+++|+...+...+..+.+.+...+
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~ 390 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQI 390 (401)
T ss_pred EEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcc
Confidence 99999999999999999999999999999999999888888777766555443
No 15
>KOG0328|consensus
Probab=100.00 E-value=3.3e-46 Score=417.90 Aligned_cols=368 Identities=35% Similarity=0.575 Sum_probs=338.1
Q ss_pred cCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEE
Q psy8497 16 SNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTI 94 (2355)
Q Consensus 16 SsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVL 94 (2355)
..+.++.+|+.+++++ +++++++.||..|..+|+.|++.+++|+++|.++..|+|||.+|.+.+|..+. ......++|
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d-~~~r~tQ~l 99 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLD-ISVRETQAL 99 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecc-cccceeeEE
Confidence 4567899999999999 99999999999999999999999999999999999999999998888886654 234457899
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCC----CCcEEEECHHHHHHHHHhhcccCcCceEEEeccc
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR----PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEA 170 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqir----q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEA 170 (2355)
||.||++|+.|+.+.+..++... ++++....|+......++ ..+|+.+||.++++++++..+....+.+||+||+
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA 178 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH
Confidence 99999999999999999998888 899999999987554433 3889999999999999999999999999999999
Q ss_pred chhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhh
Q psy8497 171 DKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250 (2355)
Q Consensus 171 HRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~l 250 (2355)
+.|++.+|..++..++..+|+..|++++|||++.++++...+|+.+|+.+.+.........++++++.+... .
T Consensus 179 DemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~E-------e 251 (400)
T KOG0328|consen 179 DEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKE-------E 251 (400)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechh-------h
Confidence 999999999999999999999999999999999999999999999999999999998888899998877655 2
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccC
Q psy8497 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGID 330 (2355)
Q Consensus 251 sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLD 330 (2355)
.+...|..+.......+++|||++++.++.|.+.|.+..+.+..+||+|+++||..++..|++|..+|||+|++-++|||
T Consensus 252 wKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiD 331 (400)
T KOG0328|consen 252 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGID 331 (400)
T ss_pred hhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCC
Confidence 25567788877777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccccccc
Q psy8497 331 AANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNV 392 (2355)
Q Consensus 331 LPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~ 392 (2355)
+|.|.+||+||.|.+.+.|++||||+||.|++|.+|-|+..++...+..+.+.+.......+
T Consensus 332 v~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp 393 (400)
T KOG0328|consen 332 VQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMP 393 (400)
T ss_pred cceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999887776654433
No 16
>KOG0333|consensus
Probab=100.00 E-value=8.9e-45 Score=428.15 Aligned_cols=357 Identities=30% Similarity=0.490 Sum_probs=330.3
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc--------CC
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL--------PV 88 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek--------r~ 88 (2355)
..++..|++.+++. +++.+...||..|+|+|..+++.+++.+++|..++||+|||.+|+++++.++... ..
T Consensus 241 pnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 241 PNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred CccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 47899999999887 9999999999999999999999999999999999999999999999999887642 24
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceE
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRL 164 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdL 164 (2355)
.++.++||+||++|++|+.+.-.+|+..+ +++++.++|+...+.+ ...+.|+|+||.+|++.+....+-+.++.+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qcty 399 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTY 399 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCce
Confidence 57899999999999999999999999888 7999999999876543 334999999999999999999999999999
Q ss_pred EEecccchhcccChHHHHHHHHHhCCCC-------------------------ceEEEEEeccChhHHHHHHHhccCCee
Q psy8497 165 FIMDEADKLINTGFVEDITWIYSQLPPM-------------------------KQMLVVSATYSHDNLATLQKYMVDPLL 219 (2355)
Q Consensus 165 LIVDEAHRLkN~GF~SrLeeILs~Lppn-------------------------rQILLLSATLS~EILElLkKfLrdPvI 219 (2355)
||+|||++|.+.+|...+..++..+|.. .|.++||||+++.+..++..||..|+.
T Consensus 400 vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~ 479 (673)
T KOG0333|consen 400 VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVV 479 (673)
T ss_pred EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeE
Confidence 9999999999999999999999998631 589999999999999999999999999
Q ss_pred eccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCC
Q psy8497 220 IRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQ 299 (2355)
Q Consensus 220 IrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgM 299 (2355)
+.+.....+...++|.+..+... .+...|..+|......++|||+++++.|+.|++.|.+.|+.+..|||+-
T Consensus 480 vtig~~gk~~~rveQ~v~m~~ed--------~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k 551 (673)
T KOG0333|consen 480 VTIGSAGKPTPRVEQKVEMVSED--------EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGK 551 (673)
T ss_pred EEeccCCCCccchheEEEEecch--------HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCc
Confidence 99999999999999999888776 4578888999888667999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHH
Q psy8497 300 DQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHS 379 (2355)
Q Consensus 300 SqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEs 379 (2355)
++++|..+|..|+++..+|||||+++++|||+|+|.+||+||++.+...|++||||+||.|+.|.++.|++..+...+..
T Consensus 552 ~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 552 SQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYD 631 (673)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877776
Q ss_pred HHHh
Q psy8497 380 LMGE 383 (2355)
Q Consensus 380 LrRe 383 (2355)
+.+.
T Consensus 632 Lkq~ 635 (673)
T KOG0333|consen 632 LKQA 635 (673)
T ss_pred HHHH
Confidence 6553
No 17
>KOG0345|consensus
Probab=100.00 E-value=3.2e-43 Score=412.29 Aligned_cols=351 Identities=27% Similarity=0.468 Sum_probs=307.7
Q ss_pred cCcccCCcH--H-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCC--eEE
Q psy8497 22 FENDVLIEK--P-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQP--QTI 94 (2355)
Q Consensus 22 ~SFEeLlLk--p-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek--r~qgg--RVL 94 (2355)
..|+++..+ + |+..+...||...+|+|..+||.++.++++++.++||+|||++|++|++..+... ..+.. .+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 456666655 6 9999999999999999999999999999999999999999999999999999532 22233 589
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC-----CCCcEEEECHHHHHHHHHhhc--ccCcCceEEEe
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK-----RPVQIVVGSPGRIKQMIKLKY--LNMDSVRLFIM 167 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi-----rq~DILVTTPErLLDLLdrr~--LdLSkIdLLIV 167 (2355)
||+||++|+.|+.+.+..|...++.+++.+++|+....... ..++|+|+||++|.+++.... +.+..+.+||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 99999999999999999999888999999999997665433 238899999999999998743 44569999999
Q ss_pred cccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCcc--ccccceEEEEeccCCCCC
Q psy8497 168 DEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATR--PLLGVKQLVALIPECKNP 245 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~--~~seVrQvVvqVpe~kn~ 245 (2355)
|||++|++.+|...+..|+..+|.+.++-++|||...++..+....|.+|+.+.+..... .+..+...+..+...
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~--- 240 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEAD--- 240 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHH---
Confidence 999999999999999999999999999999999999999999999999999988887665 444455555555433
Q ss_pred cchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec
Q psy8497 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323 (2355)
Q Consensus 246 sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS 323 (2355)
.+...|+.+|......++|||.+|...++.....|... ...+..+||.|.+..|..+++.|.+..-.||+||+
T Consensus 241 -----eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TD 315 (567)
T KOG0345|consen 241 -----EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTD 315 (567)
T ss_pred -----HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeeh
Confidence 46688899998888889999999999999988888764 57889999999999999999999998888999999
Q ss_pred ccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 324 LAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 324 ALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
++++|||||++++||+||+|.++..++||+||++|.|..|.+|+|+.+.+..+++-+
T Consensus 316 VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred hhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988554444433
No 18
>KOG0326|consensus
Probab=100.00 E-value=9.7e-44 Score=402.40 Aligned_cols=370 Identities=32% Similarity=0.500 Sum_probs=335.5
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
--+-.+|+++.++. |+.++...||..|.|+|+++||.++.|++++..+..|+|||-+|++|+|+.+. .....-+++|+
T Consensus 81 ~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid-~~~~~IQ~~il 159 (459)
T KOG0326|consen 81 ATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID-PKKNVIQAIIL 159 (459)
T ss_pred cccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC-ccccceeEEEE
Confidence 34567899999998 99999999999999999999999999999999999999999999999998876 33456679999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
||+++||.|+.+.+.++.+.. ++.+.+.+|+...+..+ ..++|+|+||.+++++..+....+..+.++|+|||+.
T Consensus 160 VPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred eecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 999999999999999999988 79999999998876543 3489999999999999999999999999999999999
Q ss_pred hcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 173 LINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
|++..|...+..++..+|...|++++|||.+..+..++.++|.+|+.+....+ .....+.|++.++.+. .+
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~--------qK 309 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEER--------QK 309 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeeechh--------hh
Confidence 99999999999999999999999999999999999999999999999887654 4566788888887665 23
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
..-|-.++.+....+.||||++...++.|+..+.+.|+.+.++|+.|.+++|.+++..|++|.++.||||+.+.+|||++
T Consensus 310 vhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiq 389 (459)
T KOG0326|consen 310 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQ 389 (459)
T ss_pred hhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccc
Confidence 34455556666667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccCCCccc
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDN 398 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~eIVPkg 398 (2355)
++++||+||.|.+++.|++||||+||.|..|.+|.++.-.+...+..+.++++.++.-.+..+.+.
T Consensus 390 avNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk~ 455 (459)
T KOG0326|consen 390 AVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDKS 455 (459)
T ss_pred eeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCCcc
Confidence 999999999999999999999999999999999999999999999999999988876655555443
No 19
>KOG0343|consensus
Probab=100.00 E-value=4.4e-43 Score=414.85 Aligned_cols=368 Identities=26% Similarity=0.440 Sum_probs=325.8
Q ss_pred hhhhccccccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy8497 7 KCARTKDVLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK 85 (2355)
Q Consensus 7 sr~rTk~~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e 85 (2355)
+.+.++...-....+..|.+++++. .+++|...+|..++.+|.++|+..++|+++|-++-||+|||++|++|+|+.|..
T Consensus 54 ~~l~~ky~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r 133 (758)
T KOG0343|consen 54 EELKQKYAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYR 133 (758)
T ss_pred HHHHHHHHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHH
Confidence 3344444333466788999999999 999999999999999999999999999999999999999999999999999874
Q ss_pred ---cCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhh-ccc
Q psy8497 86 ---LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLK-YLN 158 (2355)
Q Consensus 86 ---kr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr-~Ld 158 (2355)
....+.-+|||.||++||.|+++.+.+++... .+...+++|+..... .+...+||||||++|+.+++.. .+.
T Consensus 134 ~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~ 212 (758)
T KOG0343|consen 134 LKWSPTDGLGALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFS 212 (758)
T ss_pred cCCCCCCCceeEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCC
Confidence 34567789999999999999999999998887 899999999987553 3445899999999999988764 456
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCC--ccccccceEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDA--TRPLLGVKQLV 236 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVese--e~~~seVrQvV 236 (2355)
-..+.+||+|||+++++++|...+..|++.+|+..|+|++|||....+..++...+.+|.++.+-.. ...+..++|.+
T Consensus 213 t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y 292 (758)
T KOG0343|consen 213 TSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSY 292 (758)
T ss_pred CCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheE
Confidence 7889999999999999999999999999999999999999999999999999988999988877632 34566778888
Q ss_pred EeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCC
Q psy8497 237 ALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRG 314 (2355)
Q Consensus 237 vqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSG 314 (2355)
..++.. .++..|..++......+.|||+.+.+++..++..+... |+.+..|||.|.+..|..+...|...
T Consensus 293 ~~v~l~--------~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~ 364 (758)
T KOG0343|consen 293 VIVPLE--------DKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK 364 (758)
T ss_pred EEEehh--------hHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh
Confidence 877665 46788888888888889999999999999999999875 78889999999999999999999999
Q ss_pred CccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh
Q psy8497 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 315 EIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
.-.||+||+++++|||+|.|+.||.+|.|-+...||+|+||++|....|.+++++.+.+.+++...++.
T Consensus 365 ~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 365 RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999886655544444
No 20
>KOG0342|consensus
Probab=100.00 E-value=4e-42 Score=405.20 Aligned_cols=358 Identities=27% Similarity=0.432 Sum_probs=314.3
Q ss_pred cCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc---CCCCC
Q psy8497 16 SNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL---PVQQP 91 (2355)
Q Consensus 16 SsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek---r~qgg 91 (2355)
+++.....|+...+++ ++++|..+||.+++++|...|+.++.++++++.|-||+|||++|++++++.+... ...+.
T Consensus 76 ~s~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~ 155 (543)
T KOG0342|consen 76 DSITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGT 155 (543)
T ss_pred cchhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCe
Confidence 3456678899999999 9999999999999999999999999999999999999999999999999998852 33566
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhh-cccCcCceEEE
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLK-YLNMDSVRLFI 166 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr-~LdLSkIdLLI 166 (2355)
.+||||||++|+.|++..++++....+.+.+.++.|+.... .....++|+|+||++|+++++.. .+......++|
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 79999999999999999999999999899999999997654 23346999999999999999873 33456678999
Q ss_pred ecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccC-CeeeccCCC--ccccccceEEEEeccCCC
Q psy8497 167 MDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVD-PLLIRPEDA--TRPLLGVKQLVALIPECK 243 (2355)
Q Consensus 167 VDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrd-PvIIrVese--e~~~seVrQvVvqVpe~k 243 (2355)
+|||+++++.+|...+..|+..++...|.+++|||.+..+.+.....|.. +..+..... ......+.|.+...+...
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc
Confidence 99999999999999999999999999999999999999998888866654 666655543 334456777777766653
Q ss_pred CCcchhhhHHHHHHHHHhcCCC-CeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe
Q psy8497 244 NPSLRYVDEEKKLVQLLSQTPF-NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322 (2355)
Q Consensus 244 n~sLt~lsKkeaLLqLLerl~k-gRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST 322 (2355)
. ...|+.+|.+... .+|||||.|......+++.|.+..+.|.-|||++++..|..+...|++.+.-|||||
T Consensus 316 ~--------f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cT 387 (543)
T KOG0342|consen 316 R--------FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCT 387 (543)
T ss_pred h--------HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEec
Confidence 2 3345555555544 699999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHH
Q psy8497 323 DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 323 SALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLr 381 (2355)
+++++|||+|+|+.||.||+|.++.+||+|+||++|.|+.|..++++.+.+...+..+.
T Consensus 388 DVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 388 DVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred chhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998888887776
No 21
>KOG0340|consensus
Probab=100.00 E-value=4e-41 Score=385.75 Aligned_cols=362 Identities=29% Similarity=0.439 Sum_probs=312.9
Q ss_pred cccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 20 VLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 20 kV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
....|.++++.+ +.+-|.++|+..++|+|..+||.|+.|++||-+|.||+|||.+|.+++|+.|.+.+ .+-.+|||.|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-~giFalvlTP 83 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-YGIFALVLTP 83 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-CcceEEEecc
Confidence 456899999999 99999999999999999999999999999999999999999999999999998543 4567999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhh----cccCcCceEEEeccc
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLK----YLNMDSVRLFIMDEA 170 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr----~LdLSkIdLLIVDEA 170 (2355)
|++|+.|+.+.|..++... ++++.+++|+...- .....+||||+||++|.+++... .+.+..+.++|+|||
T Consensus 84 TrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEA 162 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA 162 (442)
T ss_pred hHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecch
Confidence 9999999999999998777 99999999997543 23345999999999999888754 345788899999999
Q ss_pred chhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccC--CeeeccCCCccccccceEEEEeccCCCCCcch
Q psy8497 171 DKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVD--PLLIRPEDATRPLLGVKQLVALIPECKNPSLR 248 (2355)
Q Consensus 171 HRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrd--PvIIrVesee~~~seVrQvVvqVpe~kn~sLt 248 (2355)
+++++..|...+..+...+|...|.++||||+...+.+...--... .+.+...........+.+.+..++..
T Consensus 163 DrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~------ 236 (442)
T KOG0340|consen 163 DRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSID------ 236 (442)
T ss_pred hhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchh------
Confidence 9999999999999999999999999999999987666555433333 34444444445555666666666654
Q ss_pred hhhHHHHHHHHHhcC---CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc
Q psy8497 249 YVDEEKKLVQLLSQT---PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325 (2355)
Q Consensus 249 ~lsKkeaLLqLLerl---~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL 325 (2355)
.+...|..+|... ....++||+++...|+.|.-.|+..++.+..+|+.|++.+|..+|.+|+++.++|||||+++
T Consensus 237 --vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVA 314 (442)
T KOG0340|consen 237 --VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVA 314 (442)
T ss_pred --hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechh
Confidence 2333445554433 44689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccc
Q psy8497 326 ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFN 391 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe 391 (2355)
.+|||||.|++||++|.|..|..|++|+||.+|.|+.|.+|.|+...+++.+..+..+.+.++...
T Consensus 315 sRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~ 380 (442)
T KOG0340|consen 315 SRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEY 380 (442)
T ss_pred hcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999888887543
No 22
>KOG0335|consensus
Probab=100.00 E-value=4.3e-41 Score=400.53 Aligned_cols=355 Identities=27% Similarity=0.474 Sum_probs=314.3
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC---------
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV--------- 88 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~--------- 88 (2355)
..+..|...++.+ |...+...++..|+|+|+.+++.+..+++++++|+||+|||.+|+++++.++.+...
T Consensus 71 ~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~ 150 (482)
T KOG0335|consen 71 PHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGG 150 (482)
T ss_pred CCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCC
Confidence 4455888888888 888899999999999999999999999999999999999999999999999986321
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceE
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRL 164 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdL 164 (2355)
..+.+|||+||++|+.|+++..++|.... .+.++..+|+..... ..+.++|+|+||.+|.+++....+.+..+.+
T Consensus 151 ~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~ 229 (482)
T KOG0335|consen 151 VYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKF 229 (482)
T ss_pred CCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcE
Confidence 24789999999999999999999997666 888999999955443 3445999999999999999999999999999
Q ss_pred EEecccchhcc-cChHHHHHHHHHhCCC----CceEEEEEeccChhHHHHHHHhccC-CeeeccCCCccccccceEEEEe
Q psy8497 165 FIMDEADKLIN-TGFVEDITWIYSQLPP----MKQMLVVSATYSHDNLATLQKYMVD-PLLIRPEDATRPLLGVKQLVAL 238 (2355)
Q Consensus 165 LIVDEAHRLkN-~GF~SrLeeILs~Lpp----nrQILLLSATLS~EILElLkKfLrd-PvIIrVesee~~~seVrQvVvq 238 (2355)
||+|||++|++ .+|...+..|+..+.. ..|.+++|||.+..+...+..++.+ ...+.+.........+.+.+.+
T Consensus 230 ~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~ 309 (482)
T KOG0335|consen 230 LVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILF 309 (482)
T ss_pred EEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeee
Confidence 99999999999 9999999999998754 6799999999999988877777776 5666777777777888888888
Q ss_pred ccCCCCCcchhhhHHHHHHHHHhcCC----C-----CeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHH
Q psy8497 239 IPECKNPSLRYVDEEKKLVQLLSQTP----F-----NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLD 309 (2355)
Q Consensus 239 Vpe~kn~sLt~lsKkeaLLqLLerl~----k-----gRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILE 309 (2355)
+.+. .+...|+++|.... . +++||||.++++++.|+.+|...++.+.-+||..++.+|.++|.
T Consensus 310 V~~~--------~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~ 381 (482)
T KOG0335|consen 310 VNEM--------EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALN 381 (482)
T ss_pred ecch--------hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHH
Confidence 8766 46677777776443 2 28999999999999999999999999999999999999999999
Q ss_pred HHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 310 SFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 310 rFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
.|+.|.+.|||||+++++|||+|.|++||+||+|.....|++||||+||.|..|.++.|+...+....+.+.+
T Consensus 382 ~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~ 454 (482)
T KOG0335|consen 382 DFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVE 454 (482)
T ss_pred HhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998666666555543
No 23
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.6e-39 Score=408.85 Aligned_cols=340 Identities=17% Similarity=0.247 Sum_probs=262.8
Q ss_pred CcccCCcHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 23 ENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 23 SFEeLlLkpLLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
.|.......|.+.|...||..|+++|.++++.+++|+|+|+++|||+|||++|+++++..+.. ....++|||+||++|
T Consensus 16 ~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~--~~~~~aL~l~PtraL 93 (742)
T TIGR03817 16 PWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD--DPRATALYLAPTKAL 93 (742)
T ss_pred CCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh--CCCcEEEEEcChHHH
Confidence 444444455999999999999999999999999999999999999999999999999999875 346789999999999
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhh----cccCcCceEEEecccchhcc
Q psy8497 103 AVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLK----YLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 103 AqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr----~LdLSkIdLLIVDEAHRLkN 175 (2355)
+.|+.+.++++. ..++++..+.|+..... ....++|||+||++|...+... ...+..+++|||||+|.+..
T Consensus 94 a~q~~~~l~~l~--~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT--LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc--cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999986 33788999999876432 2334899999999986432210 11267889999999999865
Q ss_pred cChHHHHHHHHH-------hCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCC----
Q psy8497 176 TGFVEDITWIYS-------QLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKN---- 244 (2355)
Q Consensus 176 ~GF~SrLeeILs-------~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn---- 244 (2355)
.|...+..++. .++..+|+|++|||++... +.+..++..+..+. ..... ......+..+.+....
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i-~~~~~-~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAV-TEDGS-PRGARTVALWEPPLTELTGE 247 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEE-CCCCC-CcCceEEEEecCCccccccc
Confidence 35555444443 3456789999999998764 45556666564432 22111 1122223322222100
Q ss_pred -----CcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc--------CCccEEeeCCCCHHHHHHHHHHH
Q psy8497 245 -----PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA--------NFGAEYLSGAQDQKARLASLDSF 311 (2355)
Q Consensus 245 -----~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr--------GIKVarLHGgMSqEERqeILErF 311 (2355)
...........|..++.. ..++||||++++.++.|+.+|... +.++..+||++.+++|..+++.|
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred cccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 001112333445555543 369999999999999999998764 56788999999999999999999
Q ss_pred hCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 312 KRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 312 RSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
++|++++||||+++++|||+|.+++||+++.|.+...|+||+|||||.|+.+.+++++..+
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999888643
No 24
>KOG4284|consensus
Probab=100.00 E-value=2.6e-41 Score=403.21 Aligned_cols=360 Identities=39% Similarity=0.605 Sum_probs=333.8
Q ss_pred cccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCe
Q psy8497 14 VLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQ 92 (2355)
Q Consensus 14 ~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggR 92 (2355)
.|........|+++.+-. ++-+|...+|..|+++|..|||.++.+.++||++..|+|||++|.++++..|. ......+
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~-~~~~~~q 95 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD-SRSSHIQ 95 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC-cccCcce
Confidence 455567788999998887 99999999999999999999999999999999999999999999999988776 3455678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecc
Q psy8497 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDE 169 (2355)
Q Consensus 93 VLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDE 169 (2355)
++||+||++|+.|+.+.+.+++..+.++++.+++|+..... .+..++|+|+||++|..+...+.++...++++|+||
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDE 175 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEecc
Confidence 99999999999999999999999888999999999986553 344589999999999999999999999999999999
Q ss_pred cchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcch
Q psy8497 170 ADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLR 248 (2355)
Q Consensus 170 AHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt 248 (2355)
|+.|.+ ..|...+..|+..||...|++.+|||.+.++...+.++|.+|.+++..........++|++..++...+....
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsvee 255 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEE 255 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHH
Confidence 999998 5589999999999999999999999999999999999999999999999999999999999988888766666
Q ss_pred hhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccc
Q psy8497 249 YVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARG 328 (2355)
Q Consensus 249 ~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEG 328 (2355)
...++..|..++...+..++||||.....|+-++++|...|+.+.+|.|.|.+.+|..+++.++.-.++|||+|+..++|
T Consensus 256 mrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRG 335 (980)
T KOG4284|consen 256 MRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARG 335 (980)
T ss_pred HHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhcc
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 329 IDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 329 LDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
||-+.|++||++|.|.+...|++|||||||+|..|..|.|+.....
T Consensus 336 IDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 336 IDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred CCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999866543
No 25
>KOG0348|consensus
Probab=100.00 E-value=8.3e-41 Score=395.06 Aligned_cols=359 Identities=25% Similarity=0.414 Sum_probs=296.1
Q ss_pred cccCcccCCcHH-HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc-----CCCCCe
Q psy8497 20 VLFENDVLIEKP-IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL-----PVQQPQ 92 (2355)
Q Consensus 20 kV~SFEeLlLkp-LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek-----r~qggR 92 (2355)
....|.++++.+ +.+-|+. ++|..|+.+|.++||.|+++++++|.++||+|||++|++|++..|+.. +..+..
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 346789999999 8888877 799999999999999999999999999999999999999999999853 345788
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHh-hcccCcCceEEEe
Q psy8497 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIM 167 (2355)
Q Consensus 93 VLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdr-r~LdLSkIdLLIV 167 (2355)
+||||||++|+.|+++.+.++...+--|-..++.|+...... ...++|||+||++|++.+.. ..+.+..+.|||+
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 999999999999999999999876644555677787654432 33499999999999998876 5667888999999
Q ss_pred cccchhcccChHHHHHHHHHhCC-------------CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccc------
Q psy8497 168 DEADKLINTGFVEDITWIYSQLP-------------PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRP------ 228 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~Lp-------------pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~------ 228 (2355)
||+++|++.+|...+..|++.+. ...|.+++|||+...+..+...-|.+|+.|..+.....
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 99999999999999999988762 23578999999998888888888899988873321111
Q ss_pred -------------------cccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc-
Q psy8497 229 -------------------LLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA- 288 (2355)
Q Consensus 229 -------------------~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr- 288 (2355)
+..+.+.+..+|.. +..+.....|.+........++|||+.+..+++--++.|...
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK----LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK----LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCc----hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 11222333333322 233344455566666666679999999999998877776541
Q ss_pred ---------------------CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHh
Q psy8497 289 ---------------------NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAA 347 (2355)
Q Consensus 289 ---------------------GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPq 347 (2355)
+.++.+|||+|.+++|..+++.|....-.||+||+++++|||||.|++||.||+|+++.
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 36789999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 348 TYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 348 SYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+|++|+||++|+|.+|..++|..+.+.+++..+..
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 99999999999999999999999999887666644
No 26
>KOG0346|consensus
Probab=100.00 E-value=6e-40 Score=382.31 Aligned_cols=347 Identities=25% Similarity=0.380 Sum_probs=298.5
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc-----CCCCCeEEE
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL-----PVQQPQTII 95 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek-----r~qggRVLI 95 (2355)
.+|+++.+.+ |++++..+||..|+-+|..+||.+++|++++..|.||+|||.+|++|+++.|... ...+..++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 7999999999 9999999999999999999999999999999999999999999999999988752 234678999
Q ss_pred EcccHHHHHHHHHHHHHHhcccC-CcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhhc-ccCcCceEEEecc
Q psy8497 96 LAPTREIAVQITDVVRSVGAHVK-NLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLKY-LNMDSVRLFIMDE 169 (2355)
Q Consensus 96 LVPTRALAqQ~anwLREFgk~AP-gLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr~-LdLSkIdLLIVDE 169 (2355)
||||++|++|++..+.++...++ .++++-+..+.... .....++|||+||..|+.++..+. ..+..+.+|||||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999876654 45554444333222 334559999999999999998877 5678899999999
Q ss_pred cchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccc-cccceEEEEeccCCCCCcch
Q psy8497 170 ADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRP-LLGVKQLVALIPECKNPSLR 248 (2355)
Q Consensus 170 AHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~-~seVrQvVvqVpe~kn~sLt 248 (2355)
|+.|+..||...+..+...+|+..|.++||||+..++..+-..++.+|+++.......+ ...+.|+.+.+.+.
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~------ 252 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEE------ 252 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccc------
Confidence 99999999999999999999999999999999999998888899999999888766544 35566777766643
Q ss_pred hhhHHHHHHHHHhc-CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc---
Q psy8497 249 YVDEEKKLVQLLSQ-TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL--- 324 (2355)
Q Consensus 249 ~lsKkeaLLqLLer-l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA--- 324 (2355)
++...++.++.- .-.+++|||++++.++..|.-+|..-|++.++|.|.|+...|.-+|+.|+.|-+++||||+.
T Consensus 253 --DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 253 --DKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSAD 330 (569)
T ss_pred --hhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccc
Confidence 122222222211 12369999999999999999999999999999999999999999999999999999999981
Q ss_pred --------------------------------cccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 325 --------------------------------AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 325 --------------------------------LGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
..+|||+..|.+||+||+|.++..||+|+||++|.+.+|.++.|+.+.
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecch
Confidence 468999999999999999999999999999999999999999999987
Q ss_pred CHHH
Q psy8497 373 SLVK 376 (2355)
Q Consensus 373 DVEe 376 (2355)
+..-
T Consensus 411 e~~g 414 (569)
T KOG0346|consen 411 EEFG 414 (569)
T ss_pred HHhh
Confidence 7763
No 27
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.8e-39 Score=387.46 Aligned_cols=320 Identities=18% Similarity=0.281 Sum_probs=249.2
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+||..|+|+|.++++.+++++++|+++|||+|||++|+++++.. .+.+|||+|+++|+.|+...+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-------~~~~lVi~P~~~L~~dq~~~l~~~---- 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-------DGITLVISPLISLMEDQVLQLKAS---- 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-------CCcEEEEecHHHHHHHHHHHHHHc----
Confidence 489999999999999999999999999999999999999998732 467999999999999998888765
Q ss_pred CCcEEEEEECCcccc--------CCCCCCcEEEECHHHHHHHH-Hhhcc-cCcCceEEEecccchhcccC--hHHHHH--
Q psy8497 118 KNLHVDYFIGGTQVE--------RPKRPVQIVVGSPGRIKQMI-KLKYL-NMDSVRLFIMDEADKLINTG--FVEDIT-- 183 (2355)
Q Consensus 118 PgLrVVvytGGkq~r--------kqirq~DILVTTPErLLDLL-drr~L-dLSkIdLLIVDEAHRLkN~G--F~SrLe-- 183 (2355)
++.+..+.++.... .....++||++||+.+.... ....+ ....+.+|||||||++.+++ |...+.
T Consensus 75 -gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 75 -GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 45666666665432 11234789999999875322 11222 46788999999999999876 333333
Q ss_pred -HHHHhCCCCceEEEEEeccChhHHHHHHHhc--cCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHH
Q psy8497 184 -WIYSQLPPMKQMLVVSATYSHDNLATLQKYM--VDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL 260 (2355)
Q Consensus 184 -eILs~LppnrQILLLSATLS~EILElLkKfL--rdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLL 260 (2355)
.+...+ +..++++||||++......+...+ ..+.++..... ...+...+ ..... .....++.++
T Consensus 154 ~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~---r~nl~~~v--~~~~~-------~~~~~l~~~l 220 (470)
T TIGR00614 154 GSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD---RPNLYYEV--RRKTP-------KILEDLLRFI 220 (470)
T ss_pred HHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC---CCCcEEEE--EeCCc-------cHHHHHHHHH
Confidence 333444 578899999999988776665544 23433322211 11111111 11110 1233455555
Q ss_pred h-cCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE
Q psy8497 261 S-QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN 339 (2355)
Q Consensus 261 e-rl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII 339 (2355)
. .....++||||++++.++.++..|...|+.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 221 ~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~ 300 (470)
T TIGR00614 221 RKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH 300 (470)
T ss_pred HHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE
Confidence 4 334457799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 340 LEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 340 yDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+++|.++..|+|++|||||.|.++.+++|+...+...+..++.
T Consensus 301 ~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 301 YSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred eCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 9999999999999999999999999999999888877777654
No 28
>KOG0341|consensus
Probab=100.00 E-value=1.8e-41 Score=389.41 Aligned_cols=348 Identities=30% Similarity=0.488 Sum_probs=309.4
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh-------cCCC
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-------LPVQ 89 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e-------kr~q 89 (2355)
+-++.+|.++.++. |++.|++.|+..|+|+|.++||.++.|++.|-.+-||+|||++|+++++....+ ....
T Consensus 166 pPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~E 245 (610)
T KOG0341|consen 166 PPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGE 245 (610)
T ss_pred CCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCC
Confidence 45688899988766 999999999999999999999999999999999999999999999998765443 2456
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhcc-----cCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcccCc
Q psy8497 90 QPQTIILAPTREIAVQITDVVRSVGAH-----VKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYLNMD 160 (2355)
Q Consensus 90 ggRVLILVPTRALAqQ~anwLREFgk~-----APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~LdLS 160 (2355)
++.-|||||+++|+.|+.+.+..+... .|.++..+..|+.....+. ..++|+|+||.+|.+++..+.+.+.
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd 325 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLD 325 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHH
Confidence 788999999999999999999987643 4678888999998766543 4489999999999999999999999
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEecc
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIP 240 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVp 240 (2355)
-+.+|.+|||++|++.+|...+..|+.+++...|.|++|||++..+..+....|..|+.+.+.........+.|.+.++.
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVk 405 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVK 405 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888777666666554443
Q ss_pred CCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEE
Q psy8497 241 ECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320 (2355)
Q Consensus 241 e~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLV 320 (2355)
.. .+...|++.|.... .+||||+..+..++.+.+||.-.|+.++.|||+-.+++|..+++.|+.|+-+|||
T Consensus 406 qE--------aKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLV 476 (610)
T KOG0341|consen 406 QE--------AKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLV 476 (610)
T ss_pred hh--------hhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEE
Confidence 32 23445666665543 4899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 321 STSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
+|+++..|||+|++.+||+||+|-...+|++||||+||.|+.|.+-.|+.....
T Consensus 477 ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 477 ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 999999999999999999999999999999999999999999999999976543
No 29
>KOG0332|consensus
Probab=100.00 E-value=1.1e-39 Score=375.30 Aligned_cols=375 Identities=33% Similarity=0.510 Sum_probs=325.8
Q ss_pred hhhhhhccccccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHH
Q psy8497 5 IQKCARTKDVLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALN 81 (2355)
Q Consensus 5 Iesr~rTk~~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILe 81 (2355)
|++.++--+-.+.+=++.+|+++.++| |+++|+.++|..|+.+|..+||.|+.. +++|.++..|+|||.+|++.+|.
T Consensus 73 ~~~~vk~~dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLs 152 (477)
T KOG0332|consen 73 IESNVKLADPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLS 152 (477)
T ss_pred hhhceeecCCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHH
Confidence 333333333445556789999999999 999999999999999999999999975 78999999999999999999998
Q ss_pred HHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc-CCCCCCcEEEECHHHHHHHHHh-hcccC
Q psy8497 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE-RPKRPVQIVVGSPGRIKQMIKL-KYLNM 159 (2355)
Q Consensus 82 rL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r-kqirq~DILVTTPErLLDLLdr-r~LdL 159 (2355)
++. .....+++|.|+|+++||.|+-+.+.+++.+. .+.+.+.+-+.... -..-..+|+|+||..+.+++.. ..+.+
T Consensus 153 rvd-~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~ 230 (477)
T KOG0332|consen 153 RVD-PDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDL 230 (477)
T ss_pred hcC-ccccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhCh
Confidence 765 34456788999999999999999999999988 88887777666332 2222378999999999998877 77888
Q ss_pred cCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEe
Q psy8497 160 DSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL 238 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvq 238 (2355)
..+.++|+|||+.+++ .+|...-..|...+|+..|+|++|||....+..+..+.+.++-.+.+..+......+.+++..
T Consensus 231 ~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~ 310 (477)
T KOG0332|consen 231 EKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVL 310 (477)
T ss_pred hhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheee
Confidence 9999999999998886 458888888999999999999999999999999999999999999899899999999999999
Q ss_pred ccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccE
Q psy8497 239 IPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRI 318 (2355)
Q Consensus 239 Vpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdV 318 (2355)
+... ..+...|.+++.....++.||||.+++.+..|+..|...|+.+..+||.|...+|..++++|+.|..+|
T Consensus 311 C~~~-------~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kV 383 (477)
T KOG0332|consen 311 CACR-------DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKV 383 (477)
T ss_pred ccch-------hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceE
Confidence 8766 245577777777777789999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCCccEEEEecCCC------CHhHHHHHhhccCCCCCccEEEEEEccc-CHHHHHHHHHhhcccc
Q psy8497 319 LVTTDLAARGIDAANVDLVINLEIPH------DAATYLHRMGRAGRYGTRGLVITIVSAE-SLVKFHSLMGEINLDH 388 (2355)
Q Consensus 319 LVSTSALGEGLDLPaVDTVIIyDSP~------SPqSYIQRIGRAGRiGQkGkVIVLVSsd-DVEeIEsLrReLKLKL 388 (2355)
||+|++.++|||++.|++||+||+|. .++.|++||||+||.|+.|.+|.++... ...++..+...+....
T Consensus 384 LitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i 460 (477)
T KOG0332|consen 384 LITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKI 460 (477)
T ss_pred EEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcc
Confidence 99999999999999999999999996 7899999999999999999999998654 4555667666554443
No 30
>KOG0336|consensus
Probab=100.00 E-value=1.3e-39 Score=376.17 Aligned_cols=357 Identities=27% Similarity=0.493 Sum_probs=306.1
Q ss_pred CcccccCcccCCcH-H-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh-----cCCC
Q psy8497 17 NIDVLFENDVLIEK-P-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-----LPVQ 89 (2355)
Q Consensus 17 siDkV~SFEeLlLk-p-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e-----kr~q 89 (2355)
-+.++.+|++..-+ + ++..+.+.||.+|+|+|.+++|.+++|.++|.++.||+|||++++++.+..+.. ....
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 45789999986644 3 999999999999999999999999999999999999999999999988765542 2245
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEE
Q psy8497 90 QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLF 165 (2355)
Q Consensus 90 ggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLL 165 (2355)
++.+|++.|+++|+.|+.-.+.++. +.++..++++|+..... ..+.+.|+|+||.+|.++.....+.+..+.+|
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 6789999999999999998888773 33778888888765443 33458999999999999999999999999999
Q ss_pred EecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccc-cccceEEEEeccCCCC
Q psy8497 166 IMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRP-LLGVKQLVALIPECKN 244 (2355)
Q Consensus 166 IVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~-~seVrQvVvqVpe~kn 244 (2355)
|+|||++|++++|...+.+|+-.+.+..|++++|||++..+..+...|+..|.++.+...... ...+.|.+ .++..
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d-- 448 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTD-- 448 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-Eeccc--
Confidence 999999999999999999999999999999999999999999999999999998887765443 33455555 33333
Q ss_pred CcchhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec
Q psy8497 245 PSLRYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323 (2355)
Q Consensus 245 ~sLt~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS 323 (2355)
..+...+..++... ...++||||..+.+++.|..-|.-.|+....|||+-.+.+|+.+++.|++|.++|||+|+
T Consensus 449 -----~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTD 523 (629)
T KOG0336|consen 449 -----SEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATD 523 (629)
T ss_pred -----HHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEec
Confidence 12222222222222 346999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh
Q psy8497 324 LAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 324 ALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
++.+|||+|++++|++||.|.+.+.|++|+||+||.|+.|..|.|+...+-.+...+++.
T Consensus 524 laSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 524 LASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred hhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888777766553
No 31
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.7e-38 Score=396.94 Aligned_cols=336 Identities=18% Similarity=0.271 Sum_probs=256.2
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPY-VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~-LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
+.|+++.+++ +++.+...||.+|+|+|.++++. +..++|+|+++|||+|||++|.++++..+. .++++|||+|+
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~----~~~kal~i~P~ 76 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA----RGGKALYIVPL 76 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh----cCCcEEEEeCh
Confidence 3678888777 99999999999999999999998 678999999999999999999999998876 36789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
++|+.|+.+.++++.. . ++++..++|+..... .....+|+|+||+++..++......+..+++|||||+|.+.+..+
T Consensus 77 raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 77 RALASEKFEEFERFEE-L-GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 9999999999998753 3 789999999865443 234589999999999888876544567899999999999988777
Q ss_pred HHHHHHHHHhC---CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEe-----ccCCCCCcch--
Q psy8497 179 VEDITWIYSQL---PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL-----IPECKNPSLR-- 248 (2355)
Q Consensus 179 ~SrLeeILs~L---ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvq-----Vpe~kn~sLt-- 248 (2355)
...+..++..+ .+..|+|+||||+++. ..+..|+..... .... .+ ..+...+.. +... ...+.
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~-~~~~--rp-v~l~~~v~~~~~~~~~~~-~~~~~~~ 227 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELV-DSEW--RP-IDLREGVFYGGAIHFDDS-QREVEVP 227 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcc-cCCC--CC-CCCeeeEecCCeeccccc-cccCCCc
Confidence 77777666554 5678999999999742 334444432211 1000 00 111111100 0000 00000
Q ss_pred -hhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc------------------------------------CCc
Q psy8497 249 -YVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA------------------------------------NFG 291 (2355)
Q Consensus 249 -~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr------------------------------------GIK 291 (2355)
.......+...+. ..+++||||++++.++.++..|... ..+
T Consensus 228 ~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 228 SKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred cchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 0112233333333 3469999999999999888887643 136
Q ss_pred cEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ec-----CCCCHhHHHHHhhccCCCCCc
Q psy8497 292 AEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LE-----IPHDAATYLHRMGRAGRYGTR 362 (2355)
Q Consensus 292 VarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yD-----SP~SPqSYIQRIGRAGRiGQk 362 (2355)
++++|++|+..+|..+++.|++|.++|||||+++++|||+|++++||. || .|.+..+|+||+|||||.|.+
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 899999999999999999999999999999999999999999998885 66 578999999999999999865
Q ss_pred --cEEEEEEccc
Q psy8497 363 --GLVITIVSAE 372 (2355)
Q Consensus 363 --GkVIVLVSsd 372 (2355)
|.+|+++...
T Consensus 386 ~~G~~ii~~~~~ 397 (737)
T PRK02362 386 PYGEAVLLAKSY 397 (737)
T ss_pred CCceEEEEecCc
Confidence 8888888653
No 32
>KOG0384|consensus
Probab=100.00 E-value=3.4e-40 Score=413.17 Aligned_cols=344 Identities=17% Similarity=0.247 Sum_probs=248.9
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|+.||.++++||+ .+.+|||+++||+|||+ +.+++|.+|.....-.+++|||||++++ ..|.++|..|+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktv-qti~fl~~l~~~~~~~gpflvvvplst~----~~W~~ef~~w~ 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTV-QTITFLSYLFHSLQIHGPFLVVVPLSTI----TAWEREFETWT 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcch-HHHHHHHHHHHhhhccCCeEEEeehhhh----HHHHHHHHHHh
Confidence 589999999999987 57899999999999995 4568888887666567889999999999 88999999999
Q ss_pred CCcEEEEEECCccccCCCC-------------CCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHH
Q psy8497 118 KNLHVDYFIGGTQVERPKR-------------PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITW 184 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqir-------------q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLee 184 (2355)
.+++++|.|+...+..++ .+++|||||+++ +.+..+|.-..|.+++|||||+|+|.. ..+..
T Consensus 444 -~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~--LkDk~~L~~i~w~~~~vDeahrLkN~~--~~l~~ 518 (1373)
T KOG0384|consen 444 -DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIV--LKDKAELSKIPWRYLLVDEAHRLKNDE--SKLYE 518 (1373)
T ss_pred -hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHH--hccHhhhccCCcceeeecHHhhcCchH--HHHHH
Confidence 999999999976553221 389999999998 444456777889999999999999875 66666
Q ss_pred HHHhCCCCceEEEEEeccChhHHHHHHHhc--cCCeeeccC------------------------------C---Ccccc
Q psy8497 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYM--VDPLLIRPE------------------------------D---ATRPL 229 (2355)
Q Consensus 185 ILs~LppnrQILLLSATLS~EILElLkKfL--rdPvIIrVe------------------------------s---ee~~~ 229 (2355)
.+..+.. ...|++|+||.++.+..+..++ ..|..+... . +....
T Consensus 519 ~l~~f~~-~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp 597 (1373)
T KOG0384|consen 519 SLNQFKM-NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLP 597 (1373)
T ss_pred HHHHhcc-cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCC
Confidence 6766653 4457789998887666665443 111111000 0 00000
Q ss_pred ccceEEEE--------------------------------------eccCCC-CCcchh------h--------------
Q psy8497 230 LGVKQLVA--------------------------------------LIPECK-NPSLRY------V-------------- 250 (2355)
Q Consensus 230 seVrQvVv--------------------------------------qVpe~k-n~sLt~------l-------------- 250 (2355)
....+++. .+..+. .+++.. +
T Consensus 598 ~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~ 677 (1373)
T KOG0384|consen 598 PKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQA 677 (1373)
T ss_pred CCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHH
Confidence 00111100 011111 111110 0
Q ss_pred -----hHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC---CCccEEE
Q psy8497 251 -----DEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR---GKVRILV 320 (2355)
Q Consensus 251 -----sKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS---GEIdVLV 320 (2355)
.++..|..+|.+ ..++|||||+||++|+++|++||..+++.+.+|+|.+..+-|+++|+.|+. ..|+||+
T Consensus 678 lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLL 757 (1373)
T KOG0384|consen 678 LIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLL 757 (1373)
T ss_pred HHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEE
Confidence 000111122222 134799999999999999999999999999999999999999999999995 5788999
Q ss_pred EecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccE--EEEEEcccCHHHHHHHHHhhccccccccCCCccc
Q psy8497 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL--VITIVSAESLVKFHSLMGEINLDHAFNVGLVPDN 398 (2355)
Q Consensus 321 STSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGk--VIVLVSsdDVEeIEsLrReLKLKLaLe~eIVPkg 398 (2355)
||+|||.||||.+||+|||||++|||++++|+++||||+||+.. |+.|++..+++. .+......++.+...++..+
T Consensus 758 STRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEe--EilERAk~KmvLD~aVIQ~m 835 (1373)
T KOG0384|consen 758 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEE--EILERAKLKMVLDHAVIQRM 835 (1373)
T ss_pred ecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHH--HHHHHHHHHhhhHHHHHHhh
Confidence 99999999999999999999999999999999999999998765 555555555443 34444444444444444443
No 33
>KOG0385|consensus
Probab=100.00 E-value=3.4e-39 Score=391.50 Aligned_cols=346 Identities=16% Similarity=0.230 Sum_probs=257.3
Q ss_pred CCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
.|++||.++++||.+ +-++|++++||+||| ++.|++|.+|.......+++|||||.++| .+|+.+|..|+|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKT-lQtIs~l~yl~~~~~~~GPfLVi~P~StL----~NW~~Ef~rf~P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKT-LQTISLLGYLKGRKGIPGPFLVIAPKSTL----DNWMNEFKRFTP 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchH-HHHHHHHHHHHHhcCCCCCeEEEeeHhhH----HHHHHHHHHhCC
Confidence 899999999999975 668999999999999 55668888888767778899999999999 999999999999
Q ss_pred CcEEEEEECCccccCC-------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 119 NLHVDYFIGGTQVERP-------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 119 gLrVVvytGGkq~rkq-------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
++++++|+|+...+.. ...++|+|||||+++. ....+....|.+|||||||||++.. +.+..++..+..
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~--dk~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~ 317 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIK--DKSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKT 317 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHh--hHHHHhcCCceEEEechhhhhcchh--hHHHHHHHHhcc
Confidence 9999999999865532 2249999999999743 3456667789999999999999987 888888888864
Q ss_pred CceEEEEEeccChhHHHHHHHhcc--CCeeecc----------------------------------C-----CCcccc-
Q psy8497 192 MKQMLVVSATYSHDNLATLQKYMV--DPLLIRP----------------------------------E-----DATRPL- 229 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKfLr--dPvIIrV----------------------------------e-----see~~~- 229 (2355)
. ..|++|+||.++.+..++.+|. -|.++.. . ....+.
T Consensus 318 ~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKk 396 (971)
T KOG0385|consen 318 D-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKK 396 (971)
T ss_pred c-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcc
Confidence 4 4577899988776655544331 0111000 0 000000
Q ss_pred -----------------------------------ccceEEEEeccCCCCCcch------------------hhhHHHHH
Q psy8497 230 -----------------------------------LGVKQLVALIPECKNPSLR------------------YVDEEKKL 256 (2355)
Q Consensus 230 -----------------------------------seVrQvVvqVpe~kn~sLt------------------~lsKkeaL 256 (2355)
..+..++.++..+.+..+. ...++..|
T Consensus 397 E~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 397 ELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred eeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehH
Confidence 0000011111111111110 11222333
Q ss_pred HHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC---CccEEEEecccccccCC
Q psy8497 257 VQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG---KVRILVTTDLAARGIDA 331 (2355)
Q Consensus 257 LqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG---EIdVLVSTSALGEGLDL 331 (2355)
..+|... .++|||||+|+..++++|.+|+..+++.+.+|+|.++.++|...|+.|+.. .+-|||+|+|+|.||||
T Consensus 477 DkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL 556 (971)
T KOG0385|consen 477 DKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINL 556 (971)
T ss_pred HHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccc
Confidence 3333322 357999999999999999999999999999999999999999999999964 45579999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccCCCccc
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDN 398 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~eIVPkg 398 (2355)
.++|+||+||++|||+.++|++.||||+||...|++|....+....+.+......++.+...++..+
T Consensus 557 ~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 557 TAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred ccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 9999999999999999999999999999987766666655555555555555555555555566555
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.7e-38 Score=399.51 Aligned_cols=327 Identities=18% Similarity=0.267 Sum_probs=249.1
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+...+.. +|+..|+|+|.++|+.++.++++|+.+|||+|||++|+++++.. .+.+|||+|+++|+.++...+
T Consensus 448 L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSLmqDQV~~L 520 (1195)
T PLN03137 448 LEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSLIQDQIMNL 520 (1195)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHHHHHHHHHH
Confidence 4444444 79999999999999999999999999999999999999999742 467999999999998666666
Q ss_pred HHHhcccCCcEEEEEECCccccCC----------CCCCcEEEECHHHHHH--HHHh--hcc-cCcCceEEEecccchhcc
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVERP----------KRPVQIVVGSPGRIKQ--MIKL--KYL-NMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rkq----------irq~DILVTTPErLLD--LLdr--r~L-dLSkIdLLIVDEAHRLkN 175 (2355)
... ++.+..+.++...... ...++|||+|||+|.. .+.. ..+ ....+.+|||||||++..
T Consensus 521 ~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSq 595 (1195)
T PLN03137 521 LQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQ 595 (1195)
T ss_pred HhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhh
Confidence 553 5777888877543211 1347999999999852 1211 111 124478999999999999
Q ss_pred cC--hHHHHHH--HHHhCCCCceEEEEEeccChhHHHHHHHhcc--CCeeeccCCCccccccceEEEEeccCCCCCcchh
Q psy8497 176 TG--FVEDITW--IYSQLPPMKQMLVVSATYSHDNLATLQKYMV--DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRY 249 (2355)
Q Consensus 176 ~G--F~SrLee--ILs~LppnrQILLLSATLS~EILElLkKfLr--dPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ 249 (2355)
|+ |...+.. ++....+..++++||||++..+...+...+. .+.++.... ....+ .+..++..
T Consensus 596 WGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf---~RpNL--~y~Vv~k~------- 663 (1195)
T PLN03137 596 WGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF---NRPNL--WYSVVPKT------- 663 (1195)
T ss_pred cccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc---Cccce--EEEEeccc-------
Confidence 87 5444433 2333345788999999999888776665543 222222111 11112 12222211
Q ss_pred hhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccc
Q psy8497 250 VDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARG 328 (2355)
Q Consensus 250 lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEG 328 (2355)
......|..++... .....||||.+++.++.|+..|...|+.+..+||+|+..+|..+++.|..|+++|||||.++++|
T Consensus 664 kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMG 743 (1195)
T PLN03137 664 KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743 (1195)
T ss_pred hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcC
Confidence 01123445555432 24578999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 329 IDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 329 LDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
||+|+|++||+|++|.++..|+|++|||||.|.++.+|+|+...+...+..++.
T Consensus 744 IDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 744 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998777766666654
No 35
>KOG0339|consensus
Probab=100.00 E-value=3.2e-38 Score=371.12 Aligned_cols=357 Identities=29% Similarity=0.448 Sum_probs=319.0
Q ss_pred cCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh----cCCCC
Q psy8497 16 SNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK----LPVQQ 90 (2355)
Q Consensus 16 SsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e----kr~qg 90 (2355)
+..+++..|+.+.+.. |...+....|.+++|+|-++|+..+.++++|-.|-||+|||-+|+.+++..++. .+..+
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~g 296 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEG 296 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCC
Confidence 4568899999999888 999999999999999999999999999999999999999999999999988874 23567
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEE
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFI 166 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLI 166 (2355)
+-.||||||++|+.|++..+++|++.+ +|++++++|+.....+ ...+.|||+||++|++++..+..++..+.+||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 888999999999999999999998887 9999999998765433 23489999999999999999999999999999
Q ss_pred ecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCc
Q psy8497 167 MDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPS 246 (2355)
Q Consensus 167 VDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~s 246 (2355)
|||+++|.+.+|...+..|..++.+..|.|++|||+...+..+...+|.+|+.+........-..+.|.+..++..
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~---- 451 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE---- 451 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc----
Confidence 9999999999999999999999999999999999999999999999999999887777767777788888777765
Q ss_pred chhhhHHHHHHHHHh-cCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc
Q psy8497 247 LRYVDEEKKLVQLLS-QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325 (2355)
Q Consensus 247 Lt~lsKkeaLLqLLe-rl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL 325 (2355)
..++..|+.-|. ....++||||+.-...++.|+..|...++.+..+||+|.+.+|.++|..|+.+...|||+|++.
T Consensus 452 ---~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDva 528 (731)
T KOG0339|consen 452 ---EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVA 528 (731)
T ss_pred ---HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHh
Confidence 123333333332 2234699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 326 ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
.+|+|||.+.+||+||.-.+...+.|||||.||.|.+|..+.|++..+....-.|
T Consensus 529 argldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 529 ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred hcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHH
Confidence 9999999999999999999999999999999999999999999988776644333
No 36
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.2e-37 Score=382.15 Aligned_cols=318 Identities=21% Similarity=0.323 Sum_probs=252.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+||..|+|+|.++++.++.++++|+++|||+|||++|+++++.. .+.+|||+|+++|+.|+.+.++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-------~g~~lVisPl~sL~~dq~~~l~~~----- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-------KGLTVVISPLISLMKDQVDQLRAA----- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-------CCcEEEEcCCHHHHHHHHHHHHHc-----
Confidence 89999999999999999999999999999999999999988732 457899999999999999988876
Q ss_pred CcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC--hHH---HHHHH
Q psy8497 119 NLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG--FVE---DITWI 185 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G--F~S---rLeeI 185 (2355)
++.+..+.++..... .....+|+++||++|........+....+++|||||||++..++ |.. .+..+
T Consensus 77 gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l 156 (591)
T TIGR01389 77 GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSL 156 (591)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHH
Confidence 456777777643321 12347899999999875554555667789999999999998876 433 34444
Q ss_pred HHhCCCCceEEEEEeccChhHHHHHHHhcc--CCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcC
Q psy8497 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMV--DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT 263 (2355)
Q Consensus 186 Ls~LppnrQILLLSATLS~EILElLkKfLr--dPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl 263 (2355)
...++ ..++|++|||++......+..++. .+..+... . ....+. +..... ......+..++...
T Consensus 157 ~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~--~r~nl~--~~v~~~--------~~~~~~l~~~l~~~ 222 (591)
T TIGR01389 157 AERFP-QVPRIALTATADAETRQDIRELLRLADANEFITS-F--DRPNLR--FSVVKK--------NNKQKFLLDYLKKH 222 (591)
T ss_pred HHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-C--CCCCcE--EEEEeC--------CCHHHHHHHHHHhc
Confidence 45554 445999999999888777766553 22222111 1 011111 111111 12334566666665
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP 343 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP 343 (2355)
...++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|..|.++|||||+++++|||+|++++||++++|
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 344 HDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 344 ~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
.+...|+|++|||||.|.++.+++|+...+...+..++.
T Consensus 303 ~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 303 GNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHh
Confidence 999999999999999999999999988877766666543
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1e-37 Score=385.13 Aligned_cols=317 Identities=20% Similarity=0.313 Sum_probs=247.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+||..|+|+|.++++.++.++++|+++|||+|||++|+++++.. .+.+|||+|+++|+.|+.+.++.+
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL~~dqv~~l~~~----- 88 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISLMKDQVDQLLAN----- 88 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHHHHHHHHHHHHc-----
Confidence 79999999999999999999999999999999999999998732 457999999999999999988876
Q ss_pred CcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC--hHH---HHHHH
Q psy8497 119 NLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG--FVE---DITWI 185 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G--F~S---rLeeI 185 (2355)
++.+..+.+...... .....+|+++||++|........+....+++|||||||++..++ |.. .+..+
T Consensus 89 gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l 168 (607)
T PRK11057 89 GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQL 168 (607)
T ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHH
Confidence 455666655543221 12237899999999864333333445678899999999999876 333 33344
Q ss_pred HHhCCCCceEEEEEeccChhHHHHHHHhc--cCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcC
Q psy8497 186 YSQLPPMKQMLVVSATYSHDNLATLQKYM--VDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT 263 (2355)
Q Consensus 186 Ls~LppnrQILLLSATLS~EILElLkKfL--rdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl 263 (2355)
...+ +..+++++|||++......+...+ ..+.++..... . ..+. +..+... .....|+.++...
T Consensus 169 ~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~-r--~nl~--~~v~~~~--------~~~~~l~~~l~~~ 234 (607)
T PRK11057 169 RQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD-R--PNIR--YTLVEKF--------KPLDQLMRYVQEQ 234 (607)
T ss_pred HHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCC-C--Ccce--eeeeecc--------chHHHHHHHHHhc
Confidence 4444 478899999999987765554433 33333221111 1 1111 1111111 1234556666666
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP 343 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP 343 (2355)
...++||||++++.++.++..|...++.+..+||+|+..+|..+++.|+.|.++|||||+++++|||+|+|++||+|+.|
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P 314 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIP 314 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCC
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHH
Q psy8497 344 HDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 344 ~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLr 381 (2355)
.+...|+|++|||||.|.++.+++|+...+...+..++
T Consensus 315 ~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 315 RNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999887776666554
No 38
>KOG0327|consensus
Probab=100.00 E-value=1.6e-38 Score=368.14 Aligned_cols=363 Identities=34% Similarity=0.571 Sum_probs=327.9
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
+.+.+|+.+.+++ |++++++.||.+|+.+|+.||..+..|.++++.+.+|+|||.++.++++..+. ......++|+++
T Consensus 23 evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD-~~~ke~qalila 101 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID-MSVKETQALILA 101 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC-cchHHHHHHHhc
Confidence 4477999999999 99999999999999999999999999999999999999999999999887653 344566799999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC-----CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK-----RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi-----rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
|+++|++|.....+.++... +.++....|+....... ..++|+|+||.++.+++....+....+.++|+||++.
T Consensus 102 PtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 99999999998888887666 78888888877655221 2279999999999999998888888899999999999
Q ss_pred hcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 173 LINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
++..+|...+..++..+++..|++++|||++.+++.....++..|..+.+.........+++++..+.... +
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~--------k 252 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE--------K 252 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc--------c
Confidence 99999999999999999999999999999999999999999999999999988888888888887776653 5
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...|..+.. ...+.+|||++++.+..|.+.|...++.+..+||.|.+.+|..++..|+.|..+|||.|..+++|||+.
T Consensus 253 ~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 253 LDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred ccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchh
Confidence 566666666 446899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccC
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVG 393 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~e 393 (2355)
.+.+||+|+.|.+...|++|+||+||.|.+|.++.++...+...+..+.+.+...+...+.
T Consensus 331 ~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 331 QVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred hcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 9999999999999999999999999999999999999999999999998887776655443
No 39
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=7e-37 Score=383.41 Aligned_cols=337 Identities=18% Similarity=0.258 Sum_probs=257.6
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPY-VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~-LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.|+.+.+++ +++.|...||..|+|+|.++++. ++.++++|+++|||+|||+++.++++..+.. .+.++|||+|++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---~~~~~l~l~P~~ 78 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---EGGKAVYLVPLK 78 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---cCCeEEEEeChH
Confidence 577777777 99999999999999999999985 7889999999999999999999999988763 367899999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChH
Q psy8497 101 EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFV 179 (2355)
Q Consensus 101 ALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~ 179 (2355)
+|+.|+.+.+..+.. . ++++..++|+..... ....++|+|+||+++..++......+..+++|||||+|.+.+..+.
T Consensus 79 aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg 156 (720)
T PRK00254 79 ALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRG 156 (720)
T ss_pred HHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccch
Confidence 999999999988642 3 788999999875432 2345899999999998887765555788999999999999888888
Q ss_pred HHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEE-----EEeccCCCCCcchhhhHHH
Q psy8497 180 EDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQL-----VALIPECKNPSLRYVDEEK 254 (2355)
Q Consensus 180 SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQv-----VvqVpe~kn~sLt~lsKke 254 (2355)
..+..++..+....|+|++|||+++. ..+..|+....... ... ...+... ............ ......
T Consensus 157 ~~le~il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~~~~-~~r---pv~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 229 (720)
T PRK00254 157 ATLEMILTHMLGRAQILGLSATVGNA--EELAEWLNAELVVS-DWR---PVKLRKGVFYQGFLFWEDGKIERF-PNSWES 229 (720)
T ss_pred HHHHHHHHhcCcCCcEEEEEccCCCH--HHHHHHhCCccccC-CCC---CCcceeeEecCCeeeccCcchhcc-hHHHHH
Confidence 99999999998889999999999752 33444554332211 111 1111110 011111100000 011123
Q ss_pred HHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc---------------------------------CCccEEeeCCCCH
Q psy8497 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA---------------------------------NFGAEYLSGAQDQ 301 (2355)
Q Consensus 255 aLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr---------------------------------GIKVarLHGgMSq 301 (2355)
.+.+++.. ..++||||++++.++.++..|... ..++.++|++|++
T Consensus 230 ~~~~~i~~--~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 230 LVYDAVKK--GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHh--CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 34444442 468999999999998877666321 2368999999999
Q ss_pred HHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE-------ecC-CCCHhHHHHHhhccCCCC--CccEEEEEEcc
Q psy8497 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN-------LEI-PHDAATYLHRMGRAGRYG--TRGLVITIVSA 371 (2355)
Q Consensus 302 EERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII-------yDS-P~SPqSYIQRIGRAGRiG--QkGkVIVLVSs 371 (2355)
.+|..+++.|++|.++|||||+++++|||+|++++||. ++. +.+..+|+||+|||||.| ..|.+|+++..
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999998884 333 235779999999999976 66888888876
Q ss_pred cC
Q psy8497 372 ES 373 (2355)
Q Consensus 372 dD 373 (2355)
.+
T Consensus 388 ~~ 389 (720)
T PRK00254 388 EE 389 (720)
T ss_pred cc
Confidence 54
No 40
>KOG0347|consensus
Probab=100.00 E-value=9.1e-38 Score=370.21 Aligned_cols=368 Identities=24% Similarity=0.395 Sum_probs=293.7
Q ss_pred cccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhc-----
Q psy8497 14 VLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKL----- 86 (2355)
Q Consensus 14 ~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ek----- 86 (2355)
.++....+..|..+.++. ++++|..+||..|+++|...||.+..+ .++|-+|+||+|||++|-|||+..|.+.
T Consensus 173 ~~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~ 252 (731)
T KOG0347|consen 173 DDSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ 252 (731)
T ss_pred ccccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh
Confidence 455566788899998888 999999999999999999999999998 7899999999999999999999966531
Q ss_pred -------CCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhh
Q psy8497 87 -------PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLK 155 (2355)
Q Consensus 87 -------r~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr 155 (2355)
....+..|||+|||+||.|+.+-+..+.... ++++..++|+-... ...+.++|||+||++|..++...
T Consensus 253 e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~ 331 (731)
T KOG0347|consen 253 ELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEED 331 (731)
T ss_pred hhhhHHhccCcceeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhh
Confidence 1122349999999999999999999997655 99999999996543 23345999999999999988765
Q ss_pred cc---cCcCceEEEecccchhcccChHHHHHHHHHhCC-----CCceEEEEEeccChhHHHHHH----------------
Q psy8497 156 YL---NMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-----PMKQMLVVSATYSHDNLATLQ---------------- 211 (2355)
Q Consensus 156 ~L---dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp-----pnrQILLLSATLS~EILElLk---------------- 211 (2355)
.. .+.++.+|||||++||+..++...+..++..+. ...|.+.+|||+.-...+-+.
T Consensus 332 n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~ki 411 (731)
T KOG0347|consen 332 NTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKI 411 (731)
T ss_pred hhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHH
Confidence 43 467888999999999999998888888888774 457999999998733221111
Q ss_pred -Hh------ccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHH
Q psy8497 212 -KY------MVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICEN 284 (2355)
Q Consensus 212 -Kf------LrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADy 284 (2355)
.+ ...|.++...........+....+.|+... +-..|..+|.+.+ +++||||+++..+..|.-+
T Consensus 412 q~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~e--------KD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~ 482 (731)
T KOG0347|consen 412 QHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLE--------KDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVL 482 (731)
T ss_pred HHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccc--------cceeEEEEEeecC-CceEEEechHHHHHHHHHH
Confidence 11 123344443333322222222222222111 0111223333333 6999999999999999999
Q ss_pred HHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccE
Q psy8497 285 LANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364 (2355)
Q Consensus 285 LrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGk 364 (2355)
|...++....||+.|.+..|.+-|+.|++..-.|||||+++++|||||.|++||+|-.|.+...|++|.||++|.+..|.
T Consensus 483 L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gv 562 (731)
T KOG0347|consen 483 LNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGV 562 (731)
T ss_pred HhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcccCHHHHHHHHHhhccccccc
Q psy8497 365 VITIVSAESLVKFHSLMGEINLDHAFN 391 (2355)
Q Consensus 365 VIVLVSsdDVEeIEsLrReLKLKLaLe 391 (2355)
.++++.+.++..+..+..-+.....+.
T Consensus 563 svml~~P~e~~~~~KL~ktL~k~~dlp 589 (731)
T KOG0347|consen 563 SVMLCGPQEVGPLKKLCKTLKKKEDLP 589 (731)
T ss_pred EEEEeChHHhHHHHHHHHHHhhccCCC
Confidence 999999999988888877666555443
No 41
>KOG0334|consensus
Probab=100.00 E-value=2.7e-37 Score=386.53 Aligned_cols=361 Identities=29% Similarity=0.480 Sum_probs=315.9
Q ss_pred cCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc----CCCC
Q psy8497 16 SNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL----PVQQ 90 (2355)
Q Consensus 16 SsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek----r~qg 90 (2355)
..+.++++|.+.++.. |+..++++||..++|+|.+|||.|+.|++||.++.||+|||++|++|++.+.... ...+
T Consensus 359 ~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdG 438 (997)
T KOG0334|consen 359 ECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDG 438 (997)
T ss_pred CCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCC
Confidence 3568899999999999 9999999999999999999999999999999999999999999999999766532 2458
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhc---ccCcCce
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKY---LNMDSVR 163 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~---LdLSkId 163 (2355)
+-+|||+||++|+.|+.+|+++|...+ ++++++++|+...... .+...|+||||.++++++.... ..+..+.
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 889999999999999999999998886 9999999999765543 3348999999999998887643 3455666
Q ss_pred EEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCC
Q psy8497 164 LFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECK 243 (2355)
Q Consensus 164 LLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~k 243 (2355)
+||+|||++|.+.+|...+..|+..+++..|++++|||++..+..+....+..|+.+.+.........+.+.+..++...
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~ 597 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIEN 597 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCch
Confidence 99999999999999999999999999999999999999998888888888889999888877777778888887776331
Q ss_pred CCcchhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe
Q psy8497 244 NPSLRYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322 (2355)
Q Consensus 244 n~sLt~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST 322 (2355)
.+...|+.+|... ...++||||.....|+.|...|.+.|+.+..|||+.++.+|..+++.|+++.+.+||+|
T Consensus 598 -------eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaT 670 (997)
T KOG0334|consen 598 -------EKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVAT 670 (997)
T ss_pred -------HHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEeh
Confidence 2334444444322 24699999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 323 DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 323 SALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
+.+++|||+..+.+||+||.|.....|++|+||+||.|..|.+++|+.+++..+.-.|...+
T Consensus 671 svvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 671 SVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred hhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997666666655544
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.6e-36 Score=384.22 Aligned_cols=332 Identities=21% Similarity=0.316 Sum_probs=239.4
Q ss_pred cHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-----CCCCeEEEEcccHHH
Q psy8497 29 EKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-----VQQPQTIILAPTREI 102 (2355)
Q Consensus 29 Lkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-----~qggRVLILVPTRAL 102 (2355)
+.+ +.+.+.. +|..|+|+|.++++.+++++++||++|||+|||++|+++++..+.... ..+.++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 344 5555554 789999999999999999999999999999999999999998886421 235679999999999
Q ss_pred HHHHHHHHHH-------H----hcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcc--cCcCceEE
Q psy8497 103 AVQITDVVRS-------V----GAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYL--NMDSVRLF 165 (2355)
Q Consensus 103 AqQ~anwLRE-------F----gk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~L--dLSkIdLL 165 (2355)
+.|+.+.+.+ + +...+++.+.+.+|+..... ....++||||||++|..++....+ .+..+++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9998876543 1 23344788999999875432 223589999999999777654322 36788999
Q ss_pred EecccchhcccChHHHHHHHH----HhCCCCceEEEEEeccChhHHHHHHHhccCC--------eeeccCCCccccccce
Q psy8497 166 IMDEADKLINTGFVEDITWIY----SQLPPMKQMLVVSATYSHDNLATLQKYMVDP--------LLIRPEDATRPLLGVK 233 (2355)
Q Consensus 166 IVDEAHRLkN~GF~SrLeeIL----s~LppnrQILLLSATLS~EILElLkKfLrdP--------vIIrVesee~~~seVr 233 (2355)
||||+|.+.+..+...+..++ .......|+|++|||+.+. ..+..++... ..+. ..... ..+.
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~~~iv-~~~~~--k~~~ 251 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRDCEIV-DARFV--KPFD 251 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCceEEE-ccCCC--ccce
Confidence 999999998766554444333 3334678999999999752 2233333221 1111 00000 0000
Q ss_pred EEEEecc--CCCCC--cchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc------CCccEEeeCCCCHHH
Q psy8497 234 QLVALIP--ECKNP--SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA------NFGAEYLSGAQDQKA 303 (2355)
Q Consensus 234 QvVvqVp--e~kn~--sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr------GIKVarLHGgMSqEE 303 (2355)
.....+ ..... ..........|..++.. ..++||||+++..++.++..|... +..+..+||+|+..+
T Consensus 252 -i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~ 328 (876)
T PRK13767 252 -IKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREV 328 (876)
T ss_pred -EEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHH
Confidence 111111 00000 00011122334444433 368999999999999999999873 467999999999999
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC-CCccEEEEEE
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY-GTRGLVITIV 369 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi-GQkGkVIVLV 369 (2355)
|..+++.|++|.++|||||+++++|||+|.+++||+++.|.+...|+||+|||||. |.....++++
T Consensus 329 R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 329 RLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred HHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999986 4444444444
No 43
>KOG0350|consensus
Probab=100.00 E-value=1.7e-36 Score=357.48 Aligned_cols=349 Identities=28% Similarity=0.430 Sum_probs=272.1
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHc---------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLN---------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLS---------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
+...+.+.++..++|+|..+++|++. .+++.|.||||+|||++|.|||++.|........++|||+|+++|
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTREL 227 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHH
Confidence 44568889999999999999999964 468999999999999999999999999776778899999999999
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEECCccccCCC---------CCCcEEEECHHHHHHHHH-hhcccCcCceEEEecccch
Q psy8497 103 AVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK---------RPVQIVVGSPGRIKQMIK-LKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 103 AqQ~anwLREFgk~APgLrVVvytGGkq~rkqi---------rq~DILVTTPErLLDLLd-rr~LdLSkIdLLIVDEAHR 172 (2355)
+.|+++.|.++.... ++.|..+.|....+... ...+|||+||++|.+++. ...+.+..+.+||||||+|
T Consensus 228 ~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADR 306 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADR 306 (620)
T ss_pred HHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHH
Confidence 999999999998777 88888888876544221 126999999999999998 4778899999999999999
Q ss_pred hcccChHHHHHHHHHhCC----------------------------------CCceEEEEEeccChhHHHHHHHhccCCe
Q psy8497 173 LINTGFVEDITWIYSQLP----------------------------------PMKQMLVVSATYSHDNLATLQKYMVDPL 218 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~Lp----------------------------------pnrQILLLSATLS~EILElLkKfLrdPv 218 (2355)
|++..|..-+-.+...+. +..+.+++|||+.+.-..+...-+..|.
T Consensus 307 ll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Pr 386 (620)
T KOG0350|consen 307 LLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPR 386 (620)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCc
Confidence 998765444333332221 1123456666666554444444444443
Q ss_pred eeccCCCccccccceEEEEeccCCCCCcchh---hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHH----hcCCc
Q psy8497 219 LIRPEDATRPLLGVKQLVALIPECKNPSLRY---VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLA----NANFG 291 (2355)
Q Consensus 219 IIrVesee~~~seVrQvVvqVpe~kn~sLt~---lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLr----ErGIK 291 (2355)
...+.... .....++......... ..+...+..++......++|+|+++...+..|+..|. ...++
T Consensus 387 l~~v~~~~-------~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~ 459 (620)
T KOG0350|consen 387 LFHVSKPL-------IGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFK 459 (620)
T ss_pred eEEeeccc-------ceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccch
Confidence 33222100 0011111111111111 1233556677777777899999999999999998887 23567
Q ss_pred cEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 292 AEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 292 VarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+-.+.|.+....|..+++.|+.|++.||||++++++|||+.+++.||+||+|.+...|++|+||++|.|+.|.++.+...
T Consensus 460 ~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~ 539 (620)
T KOG0350|consen 460 VSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDK 539 (620)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecc
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhhcccc
Q psy8497 372 ESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 372 dDVEeIEsLrReLKLKL 388 (2355)
.+...+..++.....-.
T Consensus 540 ~~~r~F~klL~~~~~~d 556 (620)
T KOG0350|consen 540 HEKRLFSKLLKKTNLWD 556 (620)
T ss_pred ccchHHHHHHHHhcccC
Confidence 99999888887766543
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.3e-35 Score=365.46 Aligned_cols=342 Identities=17% Similarity=0.200 Sum_probs=249.5
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
.|.++++++ +++.+...+|. |+++|.++++.+..++++||++|||+|||+++.++++..+.. ++++|||+|+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~----~~k~v~i~P~ra 76 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA----GLKSIYIVPLRS 76 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh----CCcEEEEechHH
Confidence 567777777 99999999985 999999999999999999999999999999999999887763 568999999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHH
Q psy8497 102 IAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVE 180 (2355)
Q Consensus 102 LAqQ~anwLREFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~S 180 (2355)
|+.|+.+.+.++.. . ++.+...+|+..... ....++|+|+||+++..++......+..+++|||||+|.+.+..+..
T Consensus 77 La~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~ 154 (674)
T PRK01172 77 LAMEKYEELSRLRS-L-GMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGP 154 (674)
T ss_pred HHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccH
Confidence 99999999988642 3 678888888765432 23458999999999988877655557889999999999998777666
Q ss_pred HHHHHHHh---CCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCC-CCCcc-hhhhHHHH
Q psy8497 181 DITWIYSQ---LPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPEC-KNPSL-RYVDEEKK 255 (2355)
Q Consensus 181 rLeeILs~---LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~-kn~sL-t~lsKkea 255 (2355)
.+..++.. +.+..|+|++|||+++. ..+..|+....+. .... ...+...+...... ..... ........
T Consensus 155 ~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~~~-~~~r---~vpl~~~i~~~~~~~~~~~~~~~~~~~~~ 228 (674)
T PRK01172 155 TLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASLIK-SNFR---PVPLKLGILYRKRLILDGYERSQVDINSL 228 (674)
T ss_pred HHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCccC-CCCC---CCCeEEEEEecCeeeecccccccccHHHH
Confidence 66665543 45678999999999742 3344455433211 1111 11111111000000 00000 00011122
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc-------------------------CCccEEeeCCCCHHHHHHHHHH
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANA-------------------------NFGAEYLSGAQDQKARLASLDS 310 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr-------------------------GIKVarLHGgMSqEERqeILEr 310 (2355)
+...+. ..+++||||++++.++.++..|... ..++.++||+|+..+|..+++.
T Consensus 229 i~~~~~--~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~ 306 (674)
T PRK01172 229 IKETVN--DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEM 306 (674)
T ss_pred HHHHHh--CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHH
Confidence 222222 3469999999999999999888653 1357899999999999999999
Q ss_pred HhCCCccEEEEecccccccCCCCccEEEEecC---------CCCHhHHHHHhhccCCCCC--ccEEEEEEcccC-HHHHH
Q psy8497 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEI---------PHDAATYLHRMGRAGRYGT--RGLVITIVSAES-LVKFH 378 (2355)
Q Consensus 311 FRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS---------P~SPqSYIQRIGRAGRiGQ--kGkVIVLVSsdD-VEeIE 378 (2355)
|++|.++|||||+++++|||+|+. .||+.+. |.++.+|.||+|||||.|. .|.+++++.... ...+.
T Consensus 307 f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~ 385 (674)
T PRK01172 307 FRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAK 385 (674)
T ss_pred HHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHH
Confidence 999999999999999999999986 5555543 4588999999999999884 566777765433 33344
Q ss_pred HH
Q psy8497 379 SL 380 (2355)
Q Consensus 379 sL 380 (2355)
.+
T Consensus 386 ~~ 387 (674)
T PRK01172 386 KY 387 (674)
T ss_pred HH
Confidence 43
No 45
>KOG0386|consensus
Probab=100.00 E-value=1.5e-36 Score=375.68 Aligned_cols=345 Identities=15% Similarity=0.189 Sum_probs=258.0
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|.+||..+|.|+.+ +-+.|++++||+||| ++.|+++.+|++.....+++|||||+.+| .+|-.+|..|+
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKT-IQtIsLitYLmE~K~~~GP~LvivPlstL----~NW~~Ef~kWa 467 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKT-IQTISLITYLMEHKQMQGPFLIIVPLSTL----VNWSSEFPKWA 467 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchH-HHHHHHHHHHHHHcccCCCeEEecccccc----CCchhhccccc
Confidence 5999999999999985 346999999999999 55668888998877888899999999999 89999999999
Q ss_pred CCcEEEEEECCccccCCC------CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 118 KNLHVDYFIGGTQVERPK------RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqi------rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
|.+..+.|.|....+..+ ..|+||+|||+.+.. ....+....|.+|||||.|+|++.. ..+...+.....
T Consensus 468 PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 468 PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHYR 543 (1157)
T ss_pred cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhhcccc
Confidence 999999999998766433 339999999999854 5556667889999999999999865 667666665444
Q ss_pred CceEEEEEeccChhHHHHHHHhcc------------------CCeeecc-----CCCc----------------------
Q psy8497 192 MKQMLVVSATYSHDNLATLQKYMV------------------DPLLIRP-----EDAT---------------------- 226 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKfLr------------------dPvIIrV-----esee---------------------- 226 (2355)
....+++|+||.++.+..++.+|. .|+.-.- ..+.
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 556688888887665554443321 1100000 0000
Q ss_pred ----cccc-----------c----------------------------ceEEEEeccC-CCCCc----------------
Q psy8497 227 ----RPLL-----------G----------------------------VKQLVALIPE-CKNPS---------------- 246 (2355)
Q Consensus 227 ----~~~s-----------e----------------------------VrQvVvqVpe-~kn~s---------------- 246 (2355)
..+. . +...+.++.. |..++
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~ 703 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIK 703 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChh
Confidence 0000 0 0000000000 00000
Q ss_pred --chhhhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC---CccEE
Q psy8497 247 --LRYVDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG---KVRIL 319 (2355)
Q Consensus 247 --Lt~lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG---EIdVL 319 (2355)
+....+...|..+|... .+|+||+|+++...+++|.+||...++++.+++|.+...+|-..++.|+.. .+.||
T Consensus 704 dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fl 783 (1157)
T KOG0386|consen 704 DLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFL 783 (1157)
T ss_pred HHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeee
Confidence 11112334444444433 357999999999999999999999999999999999999999999999964 45689
Q ss_pred EEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccCCC
Q psy8497 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLV 395 (2355)
Q Consensus 320 VSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~eIV 395 (2355)
++|++++.|||++.+++||+||.+|+|+.++|+..||||+|+...|.++.........+.++.....++.....++
T Consensus 784 lstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kvi 859 (1157)
T KOG0386|consen 784 LSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVI 859 (1157)
T ss_pred eeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhh
Confidence 9999999999999999999999999999999999999999998888888877777777777776555554444444
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.2e-34 Score=368.25 Aligned_cols=312 Identities=19% Similarity=0.204 Sum_probs=244.2
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
+......++| +|+++|.++++.++.+ .++||+++||+|||++++++++..+.. +.++||||||++|+.|
T Consensus 441 ~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----g~qvlvLvPT~~LA~Q 515 (926)
T TIGR00580 441 QQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----GKQVAVLVPTTLLAQQ 515 (926)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----CCeEEEEeCcHHHHHH
Confidence 3444445788 6999999999999874 689999999999999999999888763 5789999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+++.+++++... ++++.+++|...... ....++|||+||..+ ...+.+.++++|||||+|++.
T Consensus 516 ~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfg--- 586 (926)
T TIGR00580 516 HFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFG--- 586 (926)
T ss_pred HHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccc---
Confidence 999999987766 678888887654221 112489999999533 234567889999999999842
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHH
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLL 257 (2355)
......+..++...|+|+|||||.+..+......+.++.++....... ..+...+.... .......+.
T Consensus 587 --v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~--------~~~i~~~i~ 654 (926)
T TIGR00580 587 --VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYD--------PELVREAIR 654 (926)
T ss_pred --hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecC--------HHHHHHHHH
Confidence 344556677778899999999998877666555555555554332211 12222222111 011122333
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
..+. ..++++|||++++.++.+++.|... ++++..+||.|++.+|..+++.|++|+++|||||+++++|||+|.++
T Consensus 655 ~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~ 732 (926)
T TIGR00580 655 RELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNAN 732 (926)
T ss_pred HHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCC
Confidence 3333 3469999999999999999999985 78899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 336 LVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 336 TVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+||++++|. ...+|.|++||+||.|+.|.|++++..
T Consensus 733 ~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 733 TIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred EEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 999999975 678999999999999999999999854
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.2e-34 Score=358.59 Aligned_cols=329 Identities=21% Similarity=0.315 Sum_probs=259.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC----CCCCeEEEEcccHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP----VQQPQTIILAPTREIAVQIT 107 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr----~qggRVLILVPTRALAqQ~a 107 (2355)
+++.+... |..|+|.|.+|++.+.+|+|++|.+|||+|||++++++++..|.... ..+-.+|||.|+++|...+.
T Consensus 12 v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~ 90 (814)
T COG1201 12 VREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIR 90 (814)
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHH
Confidence 88888888 99999999999999999999999999999999999999999998652 33467999999999999999
Q ss_pred HHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhh--cccCcCceEEEecccchhcccChHHH
Q psy8497 108 DVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLK--YLNMDSVRLFIMDEADKLINTGFVED 181 (2355)
Q Consensus 108 nwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr--~LdLSkIdLLIVDEAHRLkN~GF~Sr 181 (2355)
..++.++... ++.+.+-+|+..... ..+++||+|||||.|.-++... .-.+.++.++||||+|.+.+...+..
T Consensus 91 ~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~ 169 (814)
T COG1201 91 RRLEEPLREL-GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQ 169 (814)
T ss_pred HHHHHHHHHc-CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchh
Confidence 9999998877 899999999976542 3445999999999997776542 22478899999999999997766555
Q ss_pred HHHHHHhC---CCCceEEEEEeccChhHHHHHHHhccCC----eeeccCCCccccccceEEEEeccCCC--CCcchhhhH
Q psy8497 182 ITWIYSQL---PPMKQMLVVSATYSHDNLATLQKYMVDP----LLIRPEDATRPLLGVKQLVALIPECK--NPSLRYVDE 252 (2355)
Q Consensus 182 LeeILs~L---ppnrQILLLSATLS~EILElLkKfLrdP----vIIrVesee~~~seVrQvVvqVpe~k--n~sLt~lsK 252 (2355)
+...+..+ ....|.|+||||..+ ...+.+|+... .++.+...... ++....+... .........
T Consensus 170 Lsl~LeRL~~l~~~~qRIGLSATV~~--~~~varfL~g~~~~~~Iv~~~~~k~~-----~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 170 LALSLERLRELAGDFQRIGLSATVGP--PEEVAKFLVGFGDPCEIVDVSAAKKL-----EIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred hhhhHHHHHhhCcccEEEeehhccCC--HHHHHHHhcCCCCceEEEEcccCCcc-----eEEEEecCCccccccchhHHH
Confidence 54444433 337899999999983 34445555432 23333322211 1111222111 111122334
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC-CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN-FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG-IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
...+..++... ..+|||++|+.+++.|+..|.+.+ ..+..+||+++.+.|..+.++|++|+++++|||+.++.|||+
T Consensus 243 ~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 243 YERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 45566666554 389999999999999999999987 889999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCC-CCCccEEEEEEcc
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGR-YGTRGLVITIVSA 371 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGR-iGQkGkVIVLVSs 371 (2355)
..+++||++.+|.+...++||+||+|+ .+...+.+++...
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999985 5666777777655
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=7.9e-34 Score=369.17 Aligned_cols=312 Identities=19% Similarity=0.188 Sum_probs=246.7
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
..+.+..++| .|+++|.++++.++.+ .++||+++||+|||++++.+++..+. .+.++||||||++|+.|
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----~g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----NHKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHH
Confidence 5666777888 8999999999999986 78999999999999999988876654 47889999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+++.+.+++... ++++.+++|....... ...++|||+||+.+. ..+.+..+++|||||+|++.
T Consensus 665 ~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG--- 735 (1147)
T PRK10689 665 HYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFG--- 735 (1147)
T ss_pred HHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcc---
Confidence 999999876555 5778788776543211 124799999997442 23456789999999999962
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHH
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLL 257 (2355)
......+..++...|+|+|||||.+....+....+.++.++...... ...+...+..... ......++
T Consensus 736 --~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~--------~~~k~~il 803 (1147)
T PRK10689 736 --VRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDS--------LVVREAIL 803 (1147)
T ss_pred --hhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCc--------HHHHHHHH
Confidence 22345567788889999999999988877777677777766543322 1223333222111 11122333
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
..+. ..++++|||++++.++.+++.|.+. ++++..+||+|++.+|..++..|++|+++|||||+++++|||+|.++
T Consensus 804 ~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~ 881 (1147)
T PRK10689 804 REIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 (1147)
T ss_pred HHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCC
Confidence 3333 2469999999999999999999987 78899999999999999999999999999999999999999999999
Q ss_pred EEEEecCC-CCHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 336 LVINLEIP-HDAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 336 TVIIyDSP-~SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+||+.+++ +...+|+|++||+||.|+.+.+++++..
T Consensus 882 ~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99988775 5788999999999999999999998854
No 49
>KOG0344|consensus
Probab=100.00 E-value=9.1e-35 Score=348.93 Aligned_cols=357 Identities=28% Similarity=0.393 Sum_probs=300.5
Q ss_pred cccccCcccC----CcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC----C
Q psy8497 18 IDVLFENDVL----IEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP----V 88 (2355)
Q Consensus 18 iDkV~SFEeL----lLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr----~ 88 (2355)
..++.+|..+ ...+ |+..+...+|..|+|+|.++++.++..++++.|+|||+|||++|.++++..|.... .
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 4567777763 2333 89999999999999999999999999999999999999999999999999998644 5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHh--cccCCcEEEEEECCccccC-----CCCCCcEEEECHHHHHHHHHhhc--ccC
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVG--AHVKNLHVDYFIGGTQVER-----PKRPVQIVVGSPGRIKQMIKLKY--LNM 159 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFg--k~APgLrVVvytGGkq~rk-----qirq~DILVTTPErLLDLLdrr~--LdL 159 (2355)
.+-+++||.|+++|+.|++..+.++. ... .++++.+........ ....++|+|.||-+|..++.... +.+
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 67889999999999999999999986 333 344444443322211 12238999999999988887654 678
Q ss_pred cCceEEEecccchhccc-ChHHHHHHHHHhCC-CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEE
Q psy8497 160 DSVRLFIMDEADKLINT-GFVEDITWIYSQLP-PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~-GF~SrLeeILs~Lp-pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVv 237 (2355)
..+.++|+||+++|.+. .|..++..|+..+. +...+-++|||.+.++.+++...+.....+.+.........+.|-..
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qelv 366 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELV 366 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhe
Confidence 99999999999999998 88999999988864 45677889999999999999888887777766665555555666555
Q ss_pred eccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHH-HhcCCccEEeeCCCCHHHHHHHHHHHhCCCc
Q psy8497 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENL-ANANFGAEYLSGAQDQKARLASLDSFKRGKV 316 (2355)
Q Consensus 238 qVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyL-rErGIKVarLHGgMSqEERqeILErFRSGEI 316 (2355)
++... ..+...+.+++...-..++|||+++.+.+..|...| ...++.+.++||..++.+|..++++|+.|++
T Consensus 367 F~gse-------~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 367 FCGSE-------KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI 439 (593)
T ss_pred eeecc-------hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCe
Confidence 55444 345667777777776679999999999999999999 7889999999999999999999999999999
Q ss_pred cEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 317 dVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
.|||||+++++|||+.++++||+||.|.+..+|++||||+||.|+.|.+|.|++..+...+..+..
T Consensus 440 wvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 440 WVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred eEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999988877766644
No 50
>KOG0337|consensus
Probab=100.00 E-value=4e-35 Score=341.39 Aligned_cols=359 Identities=28% Similarity=0.411 Sum_probs=318.1
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
.-.|+++++.. +++.|...||..|+|+|++.+|.++++++++-.+-||+|||.+++++++..|......+.++||++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 57899999999 99999999999999999999999999999999999999999999999999998766667899999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
++|+.|..+.+++++... ++++++++|+..... ....++||++||.++..+.-.-.+.+..+.+||+||+++|..
T Consensus 100 reLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfe 178 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFE 178 (529)
T ss_pred HHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHh
Confidence 999999999999999888 888888888765443 233589999999998877666567899999999999999999
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHH
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkea 255 (2355)
.+|..++..++..++...|.++||||++..+..+.+.-+..|+.++++.+......++.....+... .+...
T Consensus 179 mgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a--------~K~aa 250 (529)
T KOG0337|consen 179 MGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA--------EKEAA 250 (529)
T ss_pred hhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH--------HHHHH
Confidence 9999999999999999999999999999999999999999999998776655444444444433332 45667
Q ss_pred HHHHHhcCC-CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc
Q psy8497 256 LVQLLSQTP-FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV 334 (2355)
Q Consensus 256 LLqLLerl~-kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV 334 (2355)
|+.++.... ..++|||+.+...++-+...|...|+.+..++|.|++.-|..-+..|+.+...+||.|+++.+|+|+|-.
T Consensus 251 Ll~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipll 330 (529)
T KOG0337|consen 251 LLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLL 330 (529)
T ss_pred HHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccc
Confidence 777776543 3589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 335 DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 335 DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
+.||+||.|..+.-|++|+||+.|.|..|..|.++..++..++-.+...+...+
T Consensus 331 dnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~ 384 (529)
T KOG0337|consen 331 DNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPL 384 (529)
T ss_pred cccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCce
Confidence 999999999999999999999999999999999999998888777765555444
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.2e-33 Score=347.56 Aligned_cols=312 Identities=20% Similarity=0.268 Sum_probs=233.1
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
+...+..++| +|+++|.++++.+..+ .++||++|||+|||++|+++++..+. .+.++|||+||++|+.|
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~----~g~q~lilaPT~~LA~Q 325 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE----AGYQAALMAPTEILAEQ 325 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH----cCCeEEEEeccHHHHHH
Confidence 4555566787 7999999999999876 37999999999999999999988776 37789999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+.+.+++++... ++++.+++|+..... ....++|||+||..+.. .+.+..+++|||||+|++..
T Consensus 326 ~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~-- 397 (681)
T PRK10917 326 HYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV-- 397 (681)
T ss_pred HHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH--
Confidence 999999998776 789999999876321 12248999999987643 23467889999999998642
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHH
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLL 257 (2355)
.....+......+++|+|||||.+...........+...+. ........+...+. .... .......+.
T Consensus 398 ---~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~--~~p~~r~~i~~~~~--~~~~-----~~~~~~~i~ 465 (681)
T PRK10917 398 ---EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVID--ELPPGRKPITTVVI--PDSR-----RDEVYERIR 465 (681)
T ss_pred ---HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEe--cCCCCCCCcEEEEe--Cccc-----HHHHHHHHH
Confidence 22333444455689999999998765543332111222211 11111111222211 1110 011123333
Q ss_pred HHHhcCCCCeEEEEEcccc--------cHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 258 QLLSQTPFNQCVIFSNYQL--------RPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTRK--------mAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
..+. ...+++|||+.++ .++.+++.|... ++.+..+||+|+..+|..+++.|++|+++|||||+++++
T Consensus 466 ~~~~--~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 466 EEIA--KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHHH--cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 3332 3469999999654 345677777765 478999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEc
Q psy8497 328 GIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVS 370 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVS 370 (2355)
|||+|++++||++++|. ...++.|++||+||.|..+.|++++.
T Consensus 544 GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 544 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999999986 67899999999999999999999995
No 52
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.9e-34 Score=353.53 Aligned_cols=321 Identities=16% Similarity=0.207 Sum_probs=229.1
Q ss_pred CCcHHHHHHHHHHHcC---CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNG---YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG---RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg 119 (2355)
.|+|||++++.+++.+ +.+||++|||+|||++++.++... ..++|||||+..|+.||.+.+.+|... +.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-------~k~tLILvps~~Lv~QW~~ef~~~~~l-~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-------KKSCLVLCTSAVSVEQWKQQFKMWSTI-DD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-------CCCEEEEeCcHHHHHHHHHHHHHhcCC-CC
Confidence 4799999999998853 368999999999999988665432 356999999999999999999998533 35
Q ss_pred cEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh--------hcccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 120 LHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL--------KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 120 LrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr--------r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
..+..++|+..... .....|+|+||+++.....+ ..+....|++||+||||++... .+..++..+.
T Consensus 327 ~~I~~~tg~~k~~~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr~il~~l~- 400 (732)
T TIGR00603 327 SQICRFTSDAKERF-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFRRVLTIVQ- 400 (732)
T ss_pred ceEEEEecCccccc-ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHHHHHHhcC-
Confidence 66777777654321 22368999999988532111 2334467999999999998653 3444555553
Q ss_pred CceEEEEEeccChhHHHHH-HHhccCCeeeccCC----CccccccceEEEEeccCCCCCcchhh---------------h
Q psy8497 192 MKQMLVVSATYSHDNLATL-QKYMVDPLLIRPED----ATRPLLGVKQLVALIPECKNPSLRYV---------------D 251 (2355)
Q Consensus 192 nrQILLLSATLS~EILElL-kKfLrdPvIIrVes----ee~~~seVrQvVvqVpe~kn~sLt~l---------------s 251 (2355)
....|+|||||..+..... ..++..|.++...- .......+....++++.....+..+. .
T Consensus 401 a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~ 480 (732)
T TIGR00603 401 AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPN 480 (732)
T ss_pred cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChH
Confidence 4467999999985433211 13344555544321 12233344444444443211111100 1
Q ss_pred HHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC-CccEEEEecccccc
Q psy8497 252 EEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG-KVRILVTTDLAARG 328 (2355)
Q Consensus 252 KkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG-EIdVLVSTSALGEG 328 (2355)
+...+..++... ...++||||.++..++.++..|. +.+|||.++..+|..+++.|+.+ .+++||+|+++.+|
T Consensus 481 K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 481 KFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 223333344322 55799999999999988888773 57799999999999999999965 88999999999999
Q ss_pred cCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCc-------cEEEEEEcccCHHHHHHHHH
Q psy8497 329 IDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTR-------GLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 329 LDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQk-------GkVIVLVSsdDVEeIEsLrR 382 (2355)
||+|++++||++++|+ |+.+|+||+||++|.+.. ..++.|++.++.++.....+
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~R 617 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKR 617 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHH
Confidence 9999999999999986 999999999999997643 45688999999888665543
No 53
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.2e-33 Score=332.23 Aligned_cols=331 Identities=22% Similarity=0.304 Sum_probs=250.7
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
..+++.||.......+.+ |++|+.|||+|||+++++.+..+|.+ .++++|+|+||+.|+.|..+.++++... |.-
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~---~~~kvlfLAPTKPLV~Qh~~~~~~v~~i-p~~ 87 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW---FGGKVLFLAPTKPLVLQHAEFCRKVTGI-PED 87 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh---cCCeEEEecCCchHHHHHHHHHHHHhCC-Chh
Confidence 348899999988887766 89999999999999999999988885 2338999999999999999999999644 467
Q ss_pred EEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 121 HVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 121 rVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
.++.++|...... ......|+|+||+.+.+-+..+.+++.++.+||||||||...+.-+..+...+......+.+|+
T Consensus 88 ~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 88 EIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred heeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEE
Confidence 7889999875442 2234789999999999999999999999999999999998877777777777777777889999
Q ss_pred EEeccChhHH---HHHHHhccCCeeeccCCCccccccceE-----EEEe----------------------------ccC
Q psy8497 198 VSATYSHDNL---ATLQKYMVDPLLIRPEDATRPLLGVKQ-----LVAL----------------------------IPE 241 (2355)
Q Consensus 198 LSATLS~EIL---ElLkKfLrdPvIIrVesee~~~seVrQ-----vVvq----------------------------Vpe 241 (2355)
|||||..... +.+..+....+.++.....+...-+.. +.+. ...
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~ 247 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIES 247 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 9999986543 333333333333333222111000000 0000 000
Q ss_pred C-------------------CC-Ccc------------------------------hhh---------------------
Q psy8497 242 C-------------------KN-PSL------------------------------RYV--------------------- 250 (2355)
Q Consensus 242 ~-------------------kn-~sL------------------------------t~l--------------------- 250 (2355)
. .. ... .++
T Consensus 248 ~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 248 SSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred cCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcC
Confidence 0 00 000 000
Q ss_pred --------------------hHHHHHH----HHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccE-Eee--------C
Q psy8497 251 --------------------DEEKKLV----QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAE-YLS--------G 297 (2355)
Q Consensus 251 --------------------sKkeaLL----qLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVa-rLH--------G 297 (2355)
.++..+. +.+......|+|||++.+..++.+.++|...+..+. ++- .
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~ 407 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDK 407 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccccc
Confidence 0111122 222233446999999999999999999999988774 322 4
Q ss_pred CCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHH
Q psy8497 298 AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377 (2355)
Q Consensus 298 gMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeI 377 (2355)
||++.++.++|+.|+.|+++|||||+++++|||+|++|+||+|++-.|+..++||+||+|| ++.|.|++++...+..+.
T Consensus 408 GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR-~r~Grv~vLvt~gtrdea 486 (542)
T COG1111 408 GMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-KRKGRVVVLVTEGTRDEA 486 (542)
T ss_pred ccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc-CCCCeEEEEEecCchHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999 599999999988765553
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.1e-32 Score=341.77 Aligned_cols=313 Identities=20% Similarity=0.252 Sum_probs=229.3
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
+.+.+..++| +|+++|.++++.++.+ .+.||++|||+|||++|+++++..+. .+.++|||+||++|+.|
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~----~g~qvlilaPT~~LA~Q 299 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE----AGYQVALMAPTEILAEQ 299 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH----cCCcEEEECCHHHHHHH
Confidence 5667778898 8999999999999875 25899999999999999999988776 36789999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+.+.+++++... ++++.+++|+..... ....++|||+||..+.. .+.+..+++|||||+|++....
T Consensus 300 ~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 300 HYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH
Confidence 999999988766 789999999865432 12247999999987643 2346788999999999864221
Q ss_pred hHHHHHHHHHhCC--CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHH
Q psy8497 178 FVEDITWIYSQLP--PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255 (2355)
Q Consensus 178 F~SrLeeILs~Lp--pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkea 255 (2355)
...+..... ..+++|+|||||.+...........+...+.. .......+...+ +... . .......
T Consensus 374 ----r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~--~p~~r~~i~~~~--~~~~---~--~~~~~~~ 440 (630)
T TIGR00643 374 ----RKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDE--LPPGRKPITTVL--IKHD---E--KDIVYEF 440 (630)
T ss_pred ----HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeecc--CCCCCCceEEEE--eCcc---h--HHHHHHH
Confidence 112222222 25789999999876554432211111111111 000011122211 1111 0 0111122
Q ss_pred HHHHHhcCCCCeEEEEEcccc--------cHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQL--------RPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRK--------mAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL 325 (2355)
+...+. ...+++|||+.+. .++.+++.|... ++.+..+||+|+..+|..+++.|++|+++|||||+++
T Consensus 441 i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 441 IEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 222222 3468999998764 455667777653 6789999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEc
Q psy8497 326 ARGIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVS 370 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVS 370 (2355)
++|||+|++++||+++.|. +..++.|++||+||.|+.+.|++++.
T Consensus 519 e~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999985 78899999999999999999999983
No 55
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=7.5e-34 Score=364.41 Aligned_cols=323 Identities=20% Similarity=0.259 Sum_probs=226.2
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|++||.++++||+ .+.++||+++||+|||++++ +++.++.......+++|||||.+.| .+|..++..|+|
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~~~~gp~LIVvP~SlL----~nW~~Ei~kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYRGITGPHMVVAPKSTL----GNWMNEIRRFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhcCCCCCEEEEeChHHH----HHHHHHHHHHCC
Confidence 79999999999997 46789999999999997655 5555665444456789999999776 555555556678
Q ss_pred CcEEEEEECCccccC-------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 119 NLHVDYFIGGTQVER-------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 119 gLrVVvytGGkq~rk-------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
.+.++.++|....+. ....++||||||+++.... ..+....|++|||||||++++.. +.+..++..+.
T Consensus 244 ~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~--~~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~- 318 (1033)
T PLN03142 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEK--TALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFS- 318 (1033)
T ss_pred CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHH--HHhccCCCCEEEEcCccccCCHH--HHHHHHHHHhh-
Confidence 889999999864321 1234899999999986433 34445678999999999999865 55666666665
Q ss_pred CceEEEEEeccChhHHHHHHHhcc--CC----------------------------------eeeccCCCc--cccccce
Q psy8497 192 MKQMLVVSATYSHDNLATLQKYMV--DP----------------------------------LLIRPEDAT--RPLLGVK 233 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKfLr--dP----------------------------------vIIrVesee--~~~seVr 233 (2355)
....|+||+||.++....+..++. .| ++++..... ...+...
T Consensus 319 a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~ 398 (1033)
T PLN03142 319 TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKK 398 (1033)
T ss_pred cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCce
Confidence 345688999998765544433221 11 010000000 0011111
Q ss_pred EEEEeccCCC--------------------------------------CCc-----------------chhhhHHHHHHH
Q psy8497 234 QLVALIPECK--------------------------------------NPS-----------------LRYVDEEKKLVQ 258 (2355)
Q Consensus 234 QvVvqVpe~k--------------------------------------n~s-----------------Lt~lsKkeaLLq 258 (2355)
..+..+.... .+. .....++..|..
T Consensus 399 e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdk 478 (1033)
T PLN03142 399 ETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDK 478 (1033)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHH
Confidence 1111111100 000 000112222333
Q ss_pred HHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC---CccEEEEecccccccCCCC
Q psy8497 259 LLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG---KVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 259 LLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG---EIdVLVSTSALGEGLDLPa 333 (2355)
+|... .+++||||+++..++++|.++|...++.+.+|+|+++..+|..+++.|+.. .+.|||+|.++++||||+.
T Consensus 479 LL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 479 LLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred HHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 33222 346999999999999999999999999999999999999999999999863 3567999999999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEE--EEcccCHH
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT--IVSAESLV 375 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIV--LVSsdDVE 375 (2355)
+++||+||+||||..++|++|||+|+||...|.+ |+...+++
T Consensus 559 Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 559 ADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred CCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 9999999999999999999999999998765554 44555443
No 56
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.5e-33 Score=341.34 Aligned_cols=320 Identities=21% Similarity=0.286 Sum_probs=253.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+..+++-|.++|..++.++++|+..|||.||++||.+|++-. .+.+|||.|+.+|+..+.+.++..
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------~G~TLVVSPLiSLM~DQV~~l~~~----- 80 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------EGLTLVVSPLISLMKDQVDQLEAA----- 80 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------CCCEEEECchHHHHHHHHHHHHHc-----
Confidence 79999999999999999999999999999999999999999733 457999999999999999999887
Q ss_pred CcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC--h---HHHHHHH
Q psy8497 119 NLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG--F---VEDITWI 185 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G--F---~SrLeeI 185 (2355)
++.+..+.+.-.... .....+||+.+||+|..-.....+....+.++||||||++..|| | +..+..+
T Consensus 81 Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l 160 (590)
T COG0514 81 GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRL 160 (590)
T ss_pred CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHH
Confidence 456666665533221 11237899999999876555555567788899999999999997 5 4555556
Q ss_pred HHhCCCCceEEEEEeccChhHHHHHHHhccCCe-eeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHH--hc
Q psy8497 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPL-LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL--SQ 262 (2355)
Q Consensus 186 Ls~LppnrQILLLSATLS~EILElLkKfLrdPv-IIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLL--er 262 (2355)
...++ ..+++.||||.++.+...+...|.-.. .+.......+ ++...+..... ....+.-+. ..
T Consensus 161 ~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp--Ni~~~v~~~~~----------~~~q~~fi~~~~~ 227 (590)
T COG0514 161 RAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP--NLALKVVEKGE----------PSDQLAFLATVLP 227 (590)
T ss_pred HhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc--hhhhhhhhccc----------HHHHHHHHHhhcc
Confidence 66665 789999999999988877776554221 1111111111 11111111100 112222222 13
Q ss_pred CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC
Q psy8497 263 TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI 342 (2355)
Q Consensus 263 l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS 342 (2355)
......||||.+++.++.++.+|...|+.+..+|++|..++|..+.+.|..+++.|+|||.|.++|||-|++.+||+|++
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh
Q psy8497 343 PHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 343 P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
|.++..|.|-+|||||.|.+..+++|+...+......++..
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999888877666554
No 57
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.3e-32 Score=343.02 Aligned_cols=312 Identities=18% Similarity=0.237 Sum_probs=228.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCC-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 39 NGFVKESPIQMAAFPYVLNGY-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGR-NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.||. |+|||.++++.++.|+ ++++++|||+|||.++.+.++. +........++|++||+++|+.|+.+.+++++..+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~-~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLA-VEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcc-ccccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 5886 9999999999999998 5777899999999865544442 22111222345557799999999999999998755
Q ss_pred C----------------------CcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcc--------------
Q psy8497 118 K----------------------NLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYL-------------- 157 (2355)
Q Consensus 118 P----------------------gLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~L-------------- 157 (2355)
+ .+++..++|+..... ....++|||+|++.+. .+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~----sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG----SRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc----CCccccccccccccccch
Confidence 2 488999999976542 2344899999976543 3332
Q ss_pred --cCcCceEEEecccchhcccChHHHHHHHHHhC--CCC---ceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccc
Q psy8497 158 --NMDSVRLFIMDEADKLINTGFVEDITWIYSQL--PPM---KQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLL 230 (2355)
Q Consensus 158 --dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L--ppn---rQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~s 230 (2355)
.+..+.+||||||| ++.+|...+..|+..+ ++. .|+++||||++.++......++..+..+.+........
T Consensus 166 ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ 243 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAK 243 (844)
T ss_pred hhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccccc
Confidence 25778999999999 5678999999999975 332 69999999999877777667776666555443322222
Q ss_pred cceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHH-----
Q psy8497 231 GVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL----- 305 (2355)
Q Consensus 231 eVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERq----- 305 (2355)
.+.+++ .+... .........+..++. ....++||||++++.++.|+..|...++ ..|||.|++.+|.
T Consensus 244 ki~q~v-~v~~e----~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 244 KIVKLV-PPSDE----KFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred ceEEEE-ecChH----HHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHH
Confidence 333321 11111 011111222323332 3456899999999999999999998876 8999999999999
Q ss_pred HHHHHHhC----CC-------ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCcc-EEEEEE
Q psy8497 306 ASLDSFKR----GK-------VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG-LVITIV 369 (2355)
Q Consensus 306 eILErFRS----GE-------IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkG-kVIVLV 369 (2355)
.+++.|+. +. ..|||||+++++||||+. ++||+...| ...|+||+||++|.|..+ ..+.++
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 78999987 43 689999999999999986 888887766 689999999999998753 334444
No 58
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=6.9e-32 Score=326.90 Aligned_cols=308 Identities=17% Similarity=0.177 Sum_probs=216.7
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
..|++||.++++.++.+.++|+++|||+|||+++...+ ..+.. ....++|||||+++|+.||.+.+++++.. +...
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~--~~~~~vLilvpt~eL~~Q~~~~l~~~~~~-~~~~ 188 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE--NYEGKVLIIVPTTSLVTQMIDDFVDYRLF-PREA 188 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh--cCCCeEEEEECcHHHHHHHHHHHHHhccc-cccc
Confidence 58999999999999999999999999999998765433 22222 22348999999999999999999998643 3444
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
+..+.++.... ...+|+|+||+.|..... ..+..+++|||||||++.... +..++..++...++++||||
T Consensus 189 ~~~i~~g~~~~---~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGLTAT 258 (501)
T PHA02558 189 MHKIYSGTAKD---TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGLTGS 258 (501)
T ss_pred eeEEecCcccC---CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchh----HHHHHHhhhccceEEEEecc
Confidence 54555554332 347899999999865432 135688999999999987543 45666667667889999999
Q ss_pred cChhHHHHHH-HhccCCeeeccCCCc----cccccceEEEEeccCC-------CCCcch----h----hhHHHHHHHHHh
Q psy8497 202 YSHDNLATLQ-KYMVDPLLIRPEDAT----RPLLGVKQLVALIPEC-------KNPSLR----Y----VDEEKKLVQLLS 261 (2355)
Q Consensus 202 LS~EILElLk-KfLrdPvIIrVesee----~~~seVrQvVvqVpe~-------kn~sLt----~----lsKkeaLLqLLe 261 (2355)
|.......+. ..+..++...+.... .....+......+... ....+. . ......+..++.
T Consensus 259 p~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~ 338 (501)
T PHA02558 259 LRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLAL 338 (501)
T ss_pred CCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHH
Confidence 9753322211 112223322221110 0000111111111000 000000 0 011122222221
Q ss_pred c--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCccEEE
Q psy8497 262 Q--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT-DLAARGIDAANVDLVI 338 (2355)
Q Consensus 262 r--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST-SALGEGLDLPaVDTVI 338 (2355)
. ....++|||+..++.++.|++.|...++.+..+||+|+..+|..+++.|+++...||||| +++++|+|+|.+++||
T Consensus 339 ~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vI 418 (501)
T PHA02558 339 KLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVI 418 (501)
T ss_pred HHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEE
Confidence 1 234588999999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred EecCCCCHhHHHHHhhccCCCCCcc
Q psy8497 339 NLEIPHDAATYLHRMGRAGRYGTRG 363 (2355)
Q Consensus 339 IyDSP~SPqSYIQRIGRAGRiGQkG 363 (2355)
++.++.+...|+|++||++|.+...
T Consensus 419 l~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 419 FAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999986443
No 59
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.8e-32 Score=342.49 Aligned_cols=329 Identities=18% Similarity=0.274 Sum_probs=247.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHH-cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVL-NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LL-SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+...+...++.++.+.|+.++...+ ++.|+||++|||+|||++++++|+..+.+ .+.++|||||+++|+.|.++.+
T Consensus 20 v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~---~~~k~vYivPlkALa~Ek~~~~ 96 (766)
T COG1204 20 VLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE---GGGKVVYIVPLKALAEEKYEEF 96 (766)
T ss_pred HHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHh
Confidence 8888888899899998888886655 56999999999999999999999999884 2678999999999999999999
Q ss_pred HHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L 189 (2355)
..+ ..+ +++|..++|+..... .+..++|||+|||++..++......+..+++|||||+|.+.+...+..+..++..+
T Consensus 97 ~~~-~~~-GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~ 174 (766)
T COG1204 97 SRL-EEL-GIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARM 174 (766)
T ss_pred hhH-Hhc-CCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHH
Confidence 944 333 899999999988553 55669999999999988888776677899999999999998876666676666665
Q ss_pred CC---CceEEEEEeccChhHHHHHHHhccCCee---eccCCCccccccceEEEEeccCCC-CCcchhhhHHHHHHHHHhc
Q psy8497 190 PP---MKQMLVVSATYSHDNLATLQKYMVDPLL---IRPEDATRPLLGVKQLVALIPECK-NPSLRYVDEEKKLVQLLSQ 262 (2355)
Q Consensus 190 pp---nrQILLLSATLS~EILElLkKfLrdPvI---IrVesee~~~seVrQvVvqVpe~k-n~sLt~lsKkeaLLqLLer 262 (2355)
.. ..|+++||||+++ ...+..|+..... +++............+...-...+ ............++..+.
T Consensus 175 ~~~~~~~rivgLSATlpN--~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~- 251 (766)
T COG1204 175 RRLNELIRIVGLSATLPN--AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLA- 251 (766)
T ss_pred HhhCcceEEEEEeeecCC--HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHh-
Confidence 43 3799999999984 3445555554322 222222222222222222221121 011111122233333333
Q ss_pred CCCCeEEEEEcccccHHHHHHHHHhc-------------------------------------CCccEEeeCCCCHHHHH
Q psy8497 263 TPFNQCVIFSNYQLRPEVICENLANA-------------------------------------NFGAEYLSGAQDQKARL 305 (2355)
Q Consensus 263 l~kgRVLVFSQTRKmAEiLADyLrEr-------------------------------------GIKVarLHGgMSqEERq 305 (2355)
..+++||||++++.+...+..|... -.+++++|++|+.++|.
T Consensus 252 -~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~ 330 (766)
T COG1204 252 -EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQ 330 (766)
T ss_pred -cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHH
Confidence 3469999999999999988888830 03578999999999999
Q ss_pred HHHHHHhCCCccEEEEecccccccCCCCccEEE----Eec-----CCCCHhHHHHHhhccCCCC--CccEEEEEE
Q psy8497 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVI----NLE-----IPHDAATYLHRMGRAGRYG--TRGLVITIV 369 (2355)
Q Consensus 306 eILErFRSGEIdVLVSTSALGEGLDLPaVDTVI----IyD-----SP~SPqSYIQRIGRAGRiG--QkGkVIVLV 369 (2355)
.+.+.|+.|.++|||||.+++.|+|+|+-.+|| .|+ .+.++.+++||+|||||.| .-|.++++.
T Consensus 331 ~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 331 LVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 999999999999999999999999999777666 455 3457899999999999988 445666666
No 60
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.6e-31 Score=336.18 Aligned_cols=331 Identities=21% Similarity=0.297 Sum_probs=241.6
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
..++++||.+++..++.+ ++||++|||+|||++++++++..+. ..++++|||+|+++|+.|+.+.+++++.. +..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-~~~ 87 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH---KKGGKVLILAPTKPLVEQHAEFFRKFLNI-PEE 87 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH---hCCCeEEEEeCcHHHHHHHHHHHHHHhCC-CCc
Confidence 348999999999998887 8999999999999999988887764 35678999999999999999999998643 256
Q ss_pred EEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 121 HVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 121 rVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
.+..++|+..... .....+|+|+||+.+...+....+.+..|++|||||||++.....+..+...+.......++++
T Consensus 88 ~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~ 167 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLG 167 (773)
T ss_pred eEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEE
Confidence 7888888764321 1234789999999998877777778889999999999999866555555555555556678999
Q ss_pred EEeccChhHH---HHHHHhccCCeeeccCCCccc-----cccceEEEE--------------------------------
Q psy8497 198 VSATYSHDNL---ATLQKYMVDPLLIRPEDATRP-----LLGVKQLVA-------------------------------- 237 (2355)
Q Consensus 198 LSATLS~EIL---ElLkKfLrdPvIIrVesee~~-----~seVrQvVv-------------------------------- 237 (2355)
|||||..... ..+..+....+.+........ ...+.....
T Consensus 168 lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~ 247 (773)
T PRK13766 168 LTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVS 247 (773)
T ss_pred EEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 9999864321 111111111111100000000 000000000
Q ss_pred -------------------eccC------------------------------------------CC-------------
Q psy8497 238 -------------------LIPE------------------------------------------CK------------- 243 (2355)
Q Consensus 238 -------------------qVpe------------------------------------------~k------------- 243 (2355)
.+.. ..
T Consensus 248 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~ 327 (773)
T PRK13766 248 ISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLV 327 (773)
T ss_pred CCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHH
Confidence 0000 00
Q ss_pred ------------CCcchhhhHHHHHHHHHhc----CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCC--------C
Q psy8497 244 ------------NPSLRYVDEEKKLVQLLSQ----TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGA--------Q 299 (2355)
Q Consensus 244 ------------n~sLt~lsKkeaLLqLLer----l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGg--------M 299 (2355)
........+...|..+|.. ....++||||+++..++.|.++|...++.+..++|. |
T Consensus 328 ~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~ 407 (773)
T PRK13766 328 EDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGM 407 (773)
T ss_pred hCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCC
Confidence 0000001122333444422 456799999999999999999999999999999986 9
Q ss_pred CHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHH
Q psy8497 300 DQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377 (2355)
Q Consensus 300 SqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeI 377 (2355)
++.+|..+++.|++|+++|||||+++++|+|+|.+++||+||+|+++..++||+||+||.+. +.+++++...+.++.
T Consensus 408 ~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ee~ 484 (773)
T PRK13766 408 SQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTRDEA 484 (773)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999754 888888887776553
No 61
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.2e-32 Score=353.56 Aligned_cols=301 Identities=20% Similarity=0.293 Sum_probs=214.9
Q ss_pred EEccCCchHHHHHHHHHHHHHHhcC---------CCCCeEEEEcccHHHHHHHHHHHHHHh-----------cccCCcEE
Q psy8497 63 VQSKSGTGKSIVFVVAALNKLIKLP---------VQQPQTIILAPTREIAVQITDVVRSVG-----------AHVKNLHV 122 (2355)
Q Consensus 63 LAAPTGSGKTLVALIAILerL~ekr---------~qggRVLILVPTRALAqQ~anwLREFg-----------k~APgLrV 122 (2355)
|++|||+|||++|+++++..+.... ..+.++|||+|+++|+.|+.+.++... ....+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999998887432 235789999999999999998887522 12347899
Q ss_pred EEEECCccccC----CCCCCcEEEECHHHHHHHHHhh-cccCcCceEEEecccchhcccChHH----HHHHHHHhCCCCc
Q psy8497 123 DYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLK-YLNMDSVRLFIMDEADKLINTGFVE----DITWIYSQLPPMK 193 (2355)
Q Consensus 123 VvytGGkq~rk----qirq~DILVTTPErLLDLLdrr-~LdLSkIdLLIVDEAHRLkN~GF~S----rLeeILs~Lppnr 193 (2355)
.+++|+..... ....++|||||||+|..++..+ ...+..+++|||||+|.|.+..++. .+..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999976543 2245899999999998877543 2357899999999999998754433 3444445556678
Q ss_pred eEEEEEeccChhHHHHHHHhccC--CeeeccCCCccccccceEEEEeccCCCCCc--------------chh--hhHHHH
Q psy8497 194 QMLVVSATYSHDNLATLQKYMVD--PLLIRPEDATRPLLGVKQLVALIPECKNPS--------------LRY--VDEEKK 255 (2355)
Q Consensus 194 QILLLSATLS~EILElLkKfLrd--PvIIrVesee~~~seVrQvVvqVpe~kn~s--------------Lt~--lsKkea 255 (2355)
|+|++|||+.+. ..+..|+.. +..+.... ......+. +...+....... ... ......
T Consensus 161 QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~-~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRSA--SDVAAFLGGDRPVTVVNPP-AMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCCH--HHHHHHhcCCCCEEEECCC-CCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 999999999863 344455542 33332211 11112222 111111110000 000 001112
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC---------------------------------CccEEeeCCCCHH
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN---------------------------------FGAEYLSGAQDQK 302 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG---------------------------------IKVarLHGgMSqE 302 (2355)
++..+. ...++||||++++.++.++..|.+.. +.+..+||+|+.+
T Consensus 237 il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 237 ILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 222222 24689999999999999999997641 1256899999999
Q ss_pred HHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC-CCccEEEEEE
Q psy8497 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY-GTRGLVITIV 369 (2355)
Q Consensus 303 ERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi-GQkGkVIVLV 369 (2355)
+|..+++.|++|.+++||||+++++|||++.+++||++++|.+..+|+||+|||||. |..+.++++.
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999995 3334445333
No 62
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=9.8e-31 Score=334.77 Aligned_cols=367 Identities=16% Similarity=0.149 Sum_probs=244.4
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
.|.|||..++..++.. ..+||+++||+|||+.+.+.+...+.. ....++|||||. .|+.||...+.+.+ ++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~--g~~~rvLIVvP~-sL~~QW~~El~~kF----~l 224 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT--GRAERVLILVPE-TLQHQWLVEMLRRF----NL 224 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc--CCCCcEEEEcCH-HHHHHHHHHHHHHh----CC
Confidence 6899999999887754 369999999999998887555544442 445789999998 68888887776543 34
Q ss_pred EEEEEECCcccc------CCCCCCcEEEECHHHHHHHH-HhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhC-CC
Q psy8497 121 HVDYFIGGTQVE------RPKRPVQIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQL-PP 191 (2355)
Q Consensus 121 rVVvytGGkq~r------kqirq~DILVTTPErLLDLL-drr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~L-pp 191 (2355)
.+.++.+..... ......+++|+|++.+...- ....+.-..|++|||||||++.... ..+.....+..+ ..
T Consensus 225 ~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~ 304 (956)
T PRK04914 225 RFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV 304 (956)
T ss_pred CeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc
Confidence 445554432111 11223689999999886421 1123334579999999999997321 001112222222 23
Q ss_pred CceEEEEEeccChhHHHHHHHhc--cCCee--------------------------------------------------
Q psy8497 192 MKQMLVVSATYSHDNLATLQKYM--VDPLL-------------------------------------------------- 219 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKfL--rdPvI-------------------------------------------------- 219 (2355)
...+|+|||||.......+...+ .+|..
T Consensus 305 ~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l 384 (956)
T PRK04914 305 IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPL 384 (956)
T ss_pred cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHH
Confidence 45789999998742221111000 00000
Q ss_pred --------------------------------eccCCCc---cccccceEEEEeccCCCC--------------------
Q psy8497 220 --------------------------------IRPEDAT---RPLLGVKQLVALIPECKN-------------------- 244 (2355)
Q Consensus 220 --------------------------------IrVesee---~~~seVrQvVvqVpe~kn-------------------- 244 (2355)
++..... .+...+..+...++....
T Consensus 385 ~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~ 464 (956)
T PRK04914 385 LQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQI 464 (956)
T ss_pred HhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHH
Confidence 0000000 000000000000000000
Q ss_pred --------CcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHH-HhcCCccEEeeCCCCHHHHHHHHHHHhCC-
Q psy8497 245 --------PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENL-ANANFGAEYLSGAQDQKARLASLDSFKRG- 314 (2355)
Q Consensus 245 --------~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyL-rErGIKVarLHGgMSqEERqeILErFRSG- 314 (2355)
.......+...|..++......++||||+++.++..|++.| ...|+.+..+||+|+..+|.++++.|+++
T Consensus 465 ~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~ 544 (956)
T PRK04914 465 YQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEE 544 (956)
T ss_pred HHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCC
Confidence 00011123456777777776789999999999999999999 46799999999999999999999999974
Q ss_pred -CccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccC
Q psy8497 315 -KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVG 393 (2355)
Q Consensus 315 -EIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~e 393 (2355)
.+.|||||.++++|+|++.+++||+||+||||..|+|||||++|+|+.+.|.+++........+.+.+.+...+.+...
T Consensus 545 ~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~ 624 (956)
T PRK04914 545 DGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEH 624 (956)
T ss_pred CCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceec
Confidence 6999999999999999999999999999999999999999999999999988888776666777777777777776676
Q ss_pred CCccchhhhhhhHHHHHHHHHhCC
Q psy8497 394 LVPDNLTGDQINWTQRVQTLLAKP 417 (2355)
Q Consensus 394 IVPkgLlKeqiDw~~~LERILKnP 417 (2355)
.++..-.- ...+...+...+..+
T Consensus 625 ~~~~~~~v-~~~~~~~l~~~l~~~ 647 (956)
T PRK04914 625 TCPTGRAL-YDEFGDELIPYLASP 647 (956)
T ss_pred cCCCHHHH-HHHHHHHHHHHHhCC
Confidence 76654222 223344555555444
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=1.8e-30 Score=298.31 Aligned_cols=296 Identities=18% Similarity=0.160 Sum_probs=201.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc-------
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE------- 132 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r------- 132 (2355)
++||.+|||+|||++++++++..+.. ....++|||+|+++|+.|+.+.+..++.. .++.+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~--~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS--QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh--CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCC
Confidence 47999999999999999999987653 34678999999999999999999997532 233333332100
Q ss_pred ------------C---CCCCCcEEEECHHHHHHHHHhhc------ccCcCceEEEecccchhcccChHHHHHHHHHhCC-
Q psy8497 133 ------------R---PKRPVQIVVGSPGRIKQMIKLKY------LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP- 190 (2355)
Q Consensus 133 ------------k---qirq~DILVTTPErLLDLLdrr~------LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp- 190 (2355)
. .....+|+|+||+++...+.... +......+|||||+|.+....+.. +..++..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~ 153 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKD 153 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHH
Confidence 0 01126799999999877665411 111223689999999988754333 555555443
Q ss_pred CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhc-CCCCeEE
Q psy8497 191 PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQ-TPFNQCV 269 (2355)
Q Consensus 191 pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLer-l~kgRVL 269 (2355)
...|+|+||||++......+..+............... ....+.+..+... . ..+...+..++.. ....++|
T Consensus 154 ~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~---~~~~~~l~~l~~~~~~~~~~l 226 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESD---K---VGEISSLERLLEFIKKGGKIA 226 (358)
T ss_pred cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccc---c---ccCHHHHHHHHHHhhCCCeEE
Confidence 46899999999986554544443322111111100000 0001111111111 0 0112223333322 2346999
Q ss_pred EEEcccccHHHHHHHHHhcCC--ccEEeeCCCCHHHHHH----HHHHHhCCCccEEEEecccccccCCCCccEEEEecCC
Q psy8497 270 IFSNYQLRPEVICENLANANF--GAEYLSGAQDQKARLA----SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP 343 (2355)
Q Consensus 270 VFSQTRKmAEiLADyLrErGI--KVarLHGgMSqEERqe----ILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP 343 (2355)
|||++++.++.++..|.+.+. .+..+||+|+..+|.. +++.|+++...|||||+++++|||++ +++||++..|
T Consensus 227 Vf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~ 305 (358)
T TIGR01587 227 IIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP 305 (358)
T ss_pred EEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC
Confidence 999999999999999988776 4899999999999976 48899999999999999999999996 8888888766
Q ss_pred CCHhHHHHHhhccCCCCCc----cEEEEEEccc
Q psy8497 344 HDAATYLHRMGRAGRYGTR----GLVITIVSAE 372 (2355)
Q Consensus 344 ~SPqSYIQRIGRAGRiGQk----GkVIVLVSsd 372 (2355)
+.+|+||+||+||.|+. +.+++|....
T Consensus 306 --~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 306 --IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred --HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 88999999999998853 3667666543
No 64
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.97 E-value=9.1e-31 Score=311.89 Aligned_cols=332 Identities=19% Similarity=0.268 Sum_probs=257.6
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPY-VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~-LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
...+.+.+++ +.+.|...|+.+|.|+|.-++.. |+.|.|.+|+.+|++|||++.-++-+..+. ..++++|||||+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l---~~g~KmlfLvPL 270 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL---SGGKKMLFLVPL 270 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH---hCCCeEEEEehh
Confidence 4567777777 99999999999999999999976 678999999999999999999999888877 468899999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
.+|++|.++.|++-...+ ++.+.+-+|-.-.... ...++|||+|||-+..++... ..+.+++.|||||+|
T Consensus 271 VALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiH 348 (830)
T COG1202 271 VALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIH 348 (830)
T ss_pred HHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeee
Confidence 999999999999876666 7777777776443322 123899999999998888765 568999999999999
Q ss_pred hhcccChHHHH---HHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcch
Q psy8497 172 KLINTGFVEDI---TWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLR 248 (2355)
Q Consensus 172 RLkN~GF~SrL---eeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt 248 (2355)
.|.+...+.++ ..-+..+.+..|+|+||||..+.. +....+-...+.+ .. .+.++...+.+.....
T Consensus 349 tL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~a~lV~y--~~---RPVplErHlvf~~~e~----- 417 (830)
T COG1202 349 TLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLGAKLVLY--DE---RPVPLERHLVFARNES----- 417 (830)
T ss_pred eccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhCCeeEee--cC---CCCChhHeeeeecCch-----
Confidence 99876544444 444455567899999999998543 3333322222222 21 1223333444443221
Q ss_pred hhhHHHHHHHHH--------hcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEE
Q psy8497 249 YVDEEKKLVQLL--------SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320 (2355)
Q Consensus 249 ~lsKkeaLLqLL--------erl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLV 320 (2355)
.+...+..+. ...-.+++|||+.+++.|..|+++|..+|+++..+|++|+..+|..+...|.++++.++|
T Consensus 418 --eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VV 495 (830)
T COG1202 418 --EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVV 495 (830)
T ss_pred --HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEe
Confidence 1222222222 222346999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCCccEEE---EecCCC-CHhHHHHHhhccCCCC--CccEEEEEEcc
Q psy8497 321 TTDLAARGIDAANVDLVI---NLEIPH-DAATYLHRMGRAGRYG--TRGLVITIVSA 371 (2355)
Q Consensus 321 STSALGEGLDLPaVDTVI---IyDSP~-SPqSYIQRIGRAGRiG--QkGkVIVLVSs 371 (2355)
+|.+++.|+|+|+-.+|+ -+...| ++++|.||+|||||.+ ..|+|++++.+
T Consensus 496 TTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 496 TTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred ehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 999999999999776554 455666 9999999999999977 66888888843
No 65
>KOG0389|consensus
Probab=99.97 E-value=6.2e-32 Score=329.89 Aligned_cols=327 Identities=18% Similarity=0.263 Sum_probs=234.3
Q ss_pred CCCCCCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 39 NGFVKESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
-|+ +|.+||.-+++||. .+-++||+++||+||| |+++++|.+|.+... .++-|||||.++| -+|+++|.
T Consensus 396 s~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKT-iQvIaFlayLkq~g~-~gpHLVVvPsSTl----eNWlrEf~ 468 (941)
T KOG0389|consen 396 SGI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKT-IQVIAFLAYLKQIGN-PGPHLVVVPSSTL----ENWLREFA 468 (941)
T ss_pred CCC-cccchhhhhHHHHHHHHHccccceehhhccCcch-hHHHHHHHHHHHcCC-CCCcEEEecchhH----HHHHHHHH
Confidence 344 69999999999986 4567999999999999 778899999986544 6678999999999 99999999
Q ss_pred cccCCcEEEEEECCccccCCC--------CCCcEEEECHHHHHHH-HHhhcccCcCceEEEecccchhcccCh--HHHHH
Q psy8497 115 AHVKNLHVDYFIGGTQVERPK--------RPVQIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINTGF--VEDIT 183 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~rkqi--------rq~DILVTTPErLLDL-Ldrr~LdLSkIdLLIVDEAHRLkN~GF--~SrLe 183 (2355)
.|+|.++|..|+|....+..+ ..++||||||..+..- -++.++....|+++|+||+|.|++..- +..+.
T Consensus 469 kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM 548 (941)
T KOG0389|consen 469 KWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLM 548 (941)
T ss_pred HhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhc
Confidence 999999999999997655332 2499999999876422 223455667888999999999998762 22222
Q ss_pred HHHHhCCCCceEEEEEeccChhHHHHHHHhcc---------------------------------------------CCe
Q psy8497 184 WIYSQLPPMKQMLVVSATYSHDNLATLQKYMV---------------------------------------------DPL 218 (2355)
Q Consensus 184 eILs~LppnrQILLLSATLS~EILElLkKfLr---------------------------------------------dPv 218 (2355)
. ++ ..+.|+||+||-++.+..+..+|. .|+
T Consensus 549 ~----I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PF 623 (941)
T KOG0389|consen 549 S----IN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPF 623 (941)
T ss_pred c----cc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHH
Confidence 2 22 456688999988765543332210 011
Q ss_pred eeccCCCc--cccccceEEEEeccCC----------------------CC---Cc---c---------------------
Q psy8497 219 LIRPEDAT--RPLLGVKQLVALIPEC----------------------KN---PS---L--------------------- 247 (2355)
Q Consensus 219 IIrVesee--~~~seVrQvVvqVpe~----------------------kn---~s---L--------------------- 247 (2355)
+++..... ...+...+.+..+... .+ .. +
T Consensus 624 ILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~ 703 (941)
T KOG0389|consen 624 ILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEK 703 (941)
T ss_pred HHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHH
Confidence 11000000 0000111111111000 00 00 0
Q ss_pred ------------------------------------------------------hhhhHHHHHHHHHhcC--CCCeEEEE
Q psy8497 248 ------------------------------------------------------RYVDEEKKLVQLLSQT--PFNQCVIF 271 (2355)
Q Consensus 248 ------------------------------------------------------t~lsKkeaLLqLLerl--~kgRVLVF 271 (2355)
....+...|..+|... .++|||||
T Consensus 704 L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiF 783 (941)
T KOG0389|consen 704 LRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIF 783 (941)
T ss_pred HHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEe
Confidence 0001123333333222 23799999
Q ss_pred EcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC--CccEEEEecccccccCCCCccEEEEecCCCCHhHH
Q psy8497 272 SNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG--KVRILVTTDLAARGIDAANVDLVINLEIPHDAATY 349 (2355)
Q Consensus 272 SQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG--EIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSY 349 (2355)
++...++++|.-+|.-+++++.+|+|.+...+|+.+|+.|+.. -+-+|++|.++|.||||..+++||++|.++||..+
T Consensus 784 SQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD 863 (941)
T KOG0389|consen 784 SQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDD 863 (941)
T ss_pred eHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCccc
Confidence 9999999999999999999999999999999999999999964 34569999999999999999999999999999999
Q ss_pred HHHhhccCCCCCc--cEEEEEEcccCHHHH
Q psy8497 350 LHRMGRAGRYGTR--GLVITIVSAESLVKF 377 (2355)
Q Consensus 350 IQRIGRAGRiGQk--GkVIVLVSsdDVEeI 377 (2355)
.|+--||||.||. ..|+.|++..++++-
T Consensus 864 ~QAEDRcHRvGQtkpVtV~rLItk~TIEE~ 893 (941)
T KOG0389|consen 864 KQAEDRCHRVGQTKPVTVYRLITKSTIEEG 893 (941)
T ss_pred chhHHHHHhhCCcceeEEEEEEecCcHHHH
Confidence 9999999999965 556666677666653
No 66
>KOG0354|consensus
Probab=99.97 E-value=6.9e-30 Score=316.02 Aligned_cols=336 Identities=20% Similarity=0.287 Sum_probs=230.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
....+..-.+ .||+||.+.+..++ ++|+||++|||+|||+++...++.++.+ .+.+++|+++|++.|+.|+...+.
T Consensus 52 ~~~~~~p~~~-~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw--~p~~KiVF~aP~~pLv~QQ~a~~~ 127 (746)
T KOG0354|consen 52 AQRWIYPTNL-ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW--RPKGKVVFLAPTRPLVNQQIACFS 127 (746)
T ss_pred hccccccCcc-cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc--CCcceEEEeeCCchHHHHHHHHHh
Confidence 4444333333 89999999999999 9999999999999999999999999986 345899999999999999987777
Q ss_pred HHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhccc-CcCceEEEecccchhcccChHHHHHHHH
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLN-MDSVRLFIMDEADKLINTGFVEDITWIY 186 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~Ld-LSkIdLLIVDEAHRLkN~GF~SrLeeIL 186 (2355)
.++.. ..+....|+..... .....+|+|+||+.|.+.+...... +..|.+|||||||+.....-+..+..-+
T Consensus 128 ~~~~~---~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 128 IYLIP---YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREY 204 (746)
T ss_pred hccCc---ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHH
Confidence 76644 34444455533222 2234899999999999888775443 4889999999999988766666666444
Q ss_pred HhCCCCc-eEEEEEeccChhHHHHHH---HhccCCeeec-------------------cC--------------------
Q psy8497 187 SQLPPMK-QMLVVSATYSHDNLATLQ---KYMVDPLLIR-------------------PE-------------------- 223 (2355)
Q Consensus 187 s~Lppnr-QILLLSATLS~EILElLk---KfLrdPvIIr-------------------Ve-------------------- 223 (2355)
-.++... |||+|||||+........ .+... +.++ +.
T Consensus 205 l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 205 LDLKNQGNQILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLL 283 (746)
T ss_pred HHhhhccccEEEEecCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHH
Confidence 4444444 999999999965433221 11100 0000 00
Q ss_pred ------------CCc--cc--cccce------------------------------EEEEecc----------CCCCCc-
Q psy8497 224 ------------DAT--RP--LLGVK------------------------------QLVALIP----------ECKNPS- 246 (2355)
Q Consensus 224 ------------see--~~--~seVr------------------------------QvVvqVp----------e~kn~s- 246 (2355)
... .. ....+ ..+..++ ......
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 000 00 00000 0000000 000000
Q ss_pred ---------chh------------------hhHHHHHHHH----HhcCCCCeEEEEEcccccHHHHHHHHHh---cCCcc
Q psy8497 247 ---------LRY------------------VDEEKKLVQL----LSQTPFNQCVIFSNYQLRPEVICENLAN---ANFGA 292 (2355)
Q Consensus 247 ---------Lt~------------------lsKkeaLLqL----Lerl~kgRVLVFSQTRKmAEiLADyLrE---rGIKV 292 (2355)
... -.+...|.++ ....+..|+|||+.++..++.|..+|.. .+++.
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 000 0111222222 2233446999999999999999999983 24444
Q ss_pred EEeeC--------CCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccE
Q psy8497 293 EYLSG--------AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364 (2355)
Q Consensus 293 arLHG--------gMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGk 364 (2355)
..+-| +|++.++.++|+.|++|+++|||||+++++|||+++|++||.||.-.||...+||+|| ||. +.++
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~ 521 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSK 521 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCe
Confidence 44443 8999999999999999999999999999999999999999999999999999999999 994 6677
Q ss_pred EEEEEcccCHHHH
Q psy8497 365 VITIVSAESLVKF 377 (2355)
Q Consensus 365 VIVLVSsdDVEeI 377 (2355)
+++++........
T Consensus 522 ~vll~t~~~~~~~ 534 (746)
T KOG0354|consen 522 CVLLTTGSEVIEF 534 (746)
T ss_pred EEEEEcchhHHHH
Confidence 7777764444333
No 67
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.97 E-value=1.3e-29 Score=316.50 Aligned_cols=314 Identities=14% Similarity=0.202 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCchHHHHH---------HHHHHHHHHh--cCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVF---------VVAALNKLIK--LPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 46 PYQeEALn~LLSGRNVILAAPTGSGKTLVA---------LIAILerL~e--kr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
.+|.++++.+++++++|+.|+||+|||.+. +++.+..+.. ......++||++|+++|+.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999762 2223333321 12245689999999999999999988765
Q ss_pred cc--cCCcEEEEEECCcccc---CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC
Q psy8497 115 AH--VKNLHVDYFIGGTQVE---RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189 (2355)
Q Consensus 115 k~--APgLrVVvytGGkq~r---kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L 189 (2355)
.. ..++.+.+.+|+.... ...+..+|||+|+... ...+..+++|||||||.+...+ ..+..++..+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~ 317 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKH 317 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHHHHh
Confidence 44 3466778888887532 2223478999996521 1236788999999999987655 4445555444
Q ss_pred C-CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchh-hhHHHHHHHHHhc---CC
Q psy8497 190 P-PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRY-VDEEKKLVQLLSQ---TP 264 (2355)
Q Consensus 190 p-pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~-lsKkeaLLqLLer---l~ 264 (2355)
. ...|+|+||||++.+... +..++.++..+.+... ....+.+.+............+ ......++.++.. ..
T Consensus 318 ~~~~rq~ILmSATl~~dv~~-l~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~ 394 (675)
T PHA02653 318 IDKIRSLFLMTATLEDDRDR-IKEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPK 394 (675)
T ss_pred hhhcCEEEEEccCCcHhHHH-HHHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhccc
Confidence 3 335999999999876654 4677877777766532 2234454443222110000011 1112223333322 23
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHH-hCCCccEEEEecccccccCCCCccEEEEec
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSF-KRGKVRILVTTDLAARGIDAANVDLVINLE 341 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErF-RSGEIdVLVSTSALGEGLDLPaVDTVIIyD 341 (2355)
.+.+|||++++..++.+++.|... ++.+..|||+|++. .++++.| ++|+.+|||||+++++|||+|+|++||.++
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G 472 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTG 472 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECC
Confidence 468999999999999999999987 68999999999975 4666777 689999999999999999999999999997
Q ss_pred ---CCC---------CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 342 ---IPH---------DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 342 ---SP~---------SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.|. |..+++||+|||||. ++|.++.|++..+.
T Consensus 473 ~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 473 RVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred CccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 443 788999999999998 89999999987654
No 68
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=3e-29 Score=318.59 Aligned_cols=311 Identities=19% Similarity=0.219 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEE
Q psy8497 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYF 125 (2355)
Q Consensus 46 PYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvy 125 (2355)
.+-.+.+..|..+.++||+++||+|||.++.++++.... ..+++||+.|+++++.|+.+.+.+......+..|.+.
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 344566777777889999999999999999999887653 3568999999999999999998655444335666665
Q ss_pred ECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc-hhcccChHH-HHHHHHHhCCCCceEEEEEeccC
Q psy8497 126 IGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD-KLINTGFVE-DITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 126 tGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH-RLkN~GF~S-rLeeILs~LppnrQILLLSATLS 203 (2355)
++.... .....+|+|+|++.|+.++... ..+..+++|||||+| ++++..+.- .+..+...++...|+|+||||+.
T Consensus 81 vr~~~~--~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 81 VRGENK--VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred Eccccc--cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 554332 2234789999999999888764 468899999999999 567665533 33455566778899999999998
Q ss_pred hhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHH
Q psy8497 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICE 283 (2355)
Q Consensus 204 ~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLAD 283 (2355)
... +..++.++.++...... ..+...+...... .. ........+..++.. ..+.+|||++++..++.++.
T Consensus 158 ~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~--~~-~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~ 227 (819)
T TIGR01970 158 GER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGD--QR-LEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQE 227 (819)
T ss_pred HHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchh--hh-HHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHH
Confidence 654 35566554444443322 1233333222111 00 001112334444443 34689999999999999999
Q ss_pred HHHh---cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC----------------
Q psy8497 284 NLAN---ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH---------------- 344 (2355)
Q Consensus 284 yLrE---rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~---------------- 344 (2355)
.|.. .++.+..|||+|+..+|..+++.|.+|..+|||||++++.|||||+|++||.++.+.
T Consensus 228 ~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 307 (819)
T TIGR01970 228 QLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETV 307 (819)
T ss_pred HHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEE
Confidence 9987 378899999999999999999999999999999999999999999999999998874
Q ss_pred --CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 345 --DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 345 --SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|..+++||+|||||. .+|.||.+++..+.
T Consensus 308 ~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 308 RISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred EECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 345689999999997 89999999976543
No 69
>KOG0387|consensus
Probab=99.97 E-value=1.8e-30 Score=317.57 Aligned_cols=330 Identities=17% Similarity=0.172 Sum_probs=238.2
Q ss_pred CCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
.|++||+++++||.. +...||.++||+||| ++++++|..|.+...--+++|||||...+ .+|+.+|..|.|
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKT-IQiisFLaaL~~S~k~~~paLIVCP~Tii----~qW~~E~~~w~p 279 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKT-IQIISFLAALHHSGKLTKPALIVCPATII----HQWMKEFQTWWP 279 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccc-hhHHHHHHHHhhcccccCceEEEccHHHH----HHHHHHHHHhCc
Confidence 689999999999974 567999999999999 55668888887652334789999998766 677778888889
Q ss_pred CcEEEEEECCcccc-----------------CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHH
Q psy8497 119 NLHVDYFIGGTQVE-----------------RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVED 181 (2355)
Q Consensus 119 gLrVVvytGGkq~r-----------------kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~Sr 181 (2355)
.++|.++++..... ......+|+||||+.+ .+....+....|+++|+||+|++.|.. ..
T Consensus 280 ~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~--r~~~d~l~~~~W~y~ILDEGH~IrNpn--s~ 355 (923)
T KOG0387|consen 280 PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGF--RIQGDDLLGILWDYVILDEGHRIRNPN--SK 355 (923)
T ss_pred ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhh--cccCcccccccccEEEecCcccccCCc--cH
Confidence 99999999876621 1112267999999988 344445567789999999999999987 77
Q ss_pred HHHHHHhCCCCceEEEEEeccChhHHHHHHHhcc--CC------------e--eeccCCC--------------------
Q psy8497 182 ITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV--DP------------L--LIRPEDA-------------------- 225 (2355)
Q Consensus 182 LeeILs~LppnrQILLLSATLS~EILElLkKfLr--dP------------v--IIrVese-------------------- 225 (2355)
+...+..++ ..+.|+||+||.++.+..++.++. .| + .|.....
T Consensus 356 islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~ 434 (923)
T KOG0387|consen 356 ISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRD 434 (923)
T ss_pred HHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHH
Confidence 777777775 455677899988877766653321 00 0 0000000
Q ss_pred ---------------ccccccceEEEEeccCCCC----------------------------------------------
Q psy8497 226 ---------------TRPLLGVKQLVALIPECKN---------------------------------------------- 244 (2355)
Q Consensus 226 ---------------e~~~seVrQvVvqVpe~kn---------------------------------------------- 244 (2355)
..........+.++.-...
T Consensus 435 lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~ 514 (923)
T KOG0387|consen 435 LISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDE 514 (923)
T ss_pred HhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccc
Confidence 0000111111111111000
Q ss_pred ---------CcchhhhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHH-hcCCccEEeeCCCCHHHHHHHHHHHh
Q psy8497 245 ---------PSLRYVDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLA-NANFGAEYLSGAQDQKARLASLDSFK 312 (2355)
Q Consensus 245 ---------~sLt~lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLr-ErGIKVarLHGgMSqEERqeILErFR 312 (2355)
.......++..+..+|..- .+++||+|++++.|+++|..+|. ..++.+.+++|.++...|+.++++|+
T Consensus 515 ~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fn 594 (923)
T KOG0387|consen 515 DEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFN 594 (923)
T ss_pred ccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhc
Confidence 0011123344444444322 34699999999999999999999 68999999999999999999999999
Q ss_pred CCCc-c-EEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEE--cccCHHHHHHHHH
Q psy8497 313 RGKV-R-ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV--SAESLVKFHSLMG 382 (2355)
Q Consensus 313 SGEI-d-VLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLV--SsdDVEeIEsLrR 382 (2355)
++.. . ||++|++++.||||..|+-|||||++|||..+.|+.-||-|+||+..|++|. +..+.++....++
T Consensus 595 e~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQ 668 (923)
T KOG0387|consen 595 EDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQ 668 (923)
T ss_pred CCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHH
Confidence 7653 3 6889999999999999999999999999999999999999999876655554 5555555444433
No 70
>KOG0952|consensus
Probab=99.97 E-value=7.6e-30 Score=317.83 Aligned_cols=340 Identities=20% Similarity=0.238 Sum_probs=252.1
Q ss_pred HHCCCCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhc------CCCCCeEEEEcccHHHHHHHHHH
Q psy8497 37 QENGFVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKL------PVQQPQTIILAPTREIAVQITDV 109 (2355)
Q Consensus 37 qa~GF~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ek------r~qggRVLILVPTRALAqQ~anw 109 (2355)
.-++|.+|+.+|.++++.++. +.|+|||||||+|||.+|+++||..+.+. .....+++||+|+++||.++.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 347888999999999999996 57899999999999999999999988741 23567899999999999888876
Q ss_pred HHHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhh---cccCcCceEEEecccchhcccChHHHHHHH
Q psy8497 110 VRSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLK---YLNMDSVRLFIMDEADKLINTGFVEDITWI 185 (2355)
Q Consensus 110 LREFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr---~LdLSkIdLLIVDEAHRLkN~GF~SrLeeI 185 (2355)
+.+-+.++ ++.|..++|+.+... .+..++|||||||.+.-.-++. .-.+..+.+|||||+|.|.+. .+..++.|
T Consensus 184 ~~kkl~~~-gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEti 261 (1230)
T KOG0952|consen 184 FSKKLAPL-GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETI 261 (1230)
T ss_pred Hhhhcccc-cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHH
Confidence 66655666 899999999987653 3556999999999874333221 112577889999999977654 44555555
Q ss_pred HHh-------CCCCceEEEEEeccChhHHHHHHHhccCC--eeeccCCCccccccceEEEEeccCCCCC---cchhhhHH
Q psy8497 186 YSQ-------LPPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNP---SLRYVDEE 253 (2355)
Q Consensus 186 Ls~-------LppnrQILLLSATLS~EILElLkKfLrdP--vIIrVesee~~~seVrQvVvqVpe~kn~---sLt~lsKk 253 (2355)
+.. .....++|+||||+++ ...+..||..+ .-+........+..+.+.+.-++..+.. ........
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN--~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN--YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC--HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 544 3467899999999984 33444455432 2233333334444455544444333111 11222233
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC-----------------------CccEEeeCCCCHHHHHHHHHH
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN-----------------------FGAEYLSGAQDQKARLASLDS 310 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG-----------------------IKVarLHGgMSqEERqeILEr 310 (2355)
..+.+.+.. +++|||||.++......+..|.+.. ....++|.+|...+|..+.+.
T Consensus 340 ~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 340 DKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 555555554 3799999999999999888887631 356789999999999999999
Q ss_pred HhCCCccEEEEecccccccCCCCccEEE----EecCCC------CHhHHHHHhhccCCCC--CccEEEEEEcccCHHHHH
Q psy8497 311 FKRGKVRILVTTDLAARGIDAANVDLVI----NLEIPH------DAATYLHRMGRAGRYG--TRGLVITIVSAESLVKFH 378 (2355)
Q Consensus 311 FRSGEIdVLVSTSALGEGLDLPaVDTVI----IyDSP~------SPqSYIQRIGRAGRiG--QkGkVIVLVSsdDVEeIE 378 (2355)
|..|.++||+||.++++|+|||+--+|| +||+-. ..-..+|..|||||.. ..|.+|++.+.+....+.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 9999999999999999999999766666 344332 5678899999999965 678999999988888887
Q ss_pred HHHH
Q psy8497 379 SLMG 382 (2355)
Q Consensus 379 sLrR 382 (2355)
.++.
T Consensus 498 sLl~ 501 (1230)
T KOG0952|consen 498 SLLT 501 (1230)
T ss_pred HHHc
Confidence 7754
No 71
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=2.8e-29 Score=327.59 Aligned_cols=301 Identities=20% Similarity=0.236 Sum_probs=228.7
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+.+.+.. .|+ .|+++|..+++.++.++++++++|||+|||. ++++++..+. ..+.++|||+||++|+.|+.+.+
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~---~~g~~alIL~PTreLa~Qi~~~l 143 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA---KKGKKSYIIFPTRLLVEQVVEKL 143 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH---hcCCeEEEEeccHHHHHHHHHHH
Confidence 4555544 477 8999999999999999999999999999995 4444444443 24788999999999999999999
Q ss_pred HHHhcccCCcEEEEEECCccc-----cC-----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc-----
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQV-----ER-----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN----- 175 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~-----rk-----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN----- 175 (2355)
++++... ++.+.++.|+... .. ....++|+|+||++|.+.+. .+....+++|||||||+++.
T Consensus 144 ~~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 144 EKFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccch
Confidence 9998766 6677666665421 10 12348999999999988775 45566799999999999885
Q ss_pred ------cChH-HHHHHHHHhCCC------------------------CceEEEEEeccChhHHHHHHHhccCCeeeccCC
Q psy8497 176 ------TGFV-EDITWIYSQLPP------------------------MKQMLVVSATYSHDNLATLQKYMVDPLLIRPED 224 (2355)
Q Consensus 176 ------~GF~-SrLeeILs~Lpp------------------------nrQILLLSATLS~EILElLkKfLrdPvIIrVes 224 (2355)
.+|. ..+..++..++. ..|++++|||+++..... .++.....+.+..
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~~ll~~~v~~ 298 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--KLFRELLGFEVGS 298 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--HHhhccceEEecC
Confidence 4563 566666666553 679999999998642221 1222333344443
Q ss_pred CccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEccccc---HHHHHHHHHhcCCccEEeeCCCCH
Q psy8497 225 ATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLR---PEVICENLANANFGAEYLSGAQDQ 301 (2355)
Q Consensus 225 ee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKm---AEiLADyLrErGIKVarLHGgMSq 301 (2355)
.......+.+.+.... .+...|..++.... .++||||++... ++.|+++|...|+++..+||+|
T Consensus 299 ~~~~~rnI~~~yi~~~----------~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-- 365 (1176)
T PRK09401 299 PVFYLRNIVDSYIVDE----------DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-- 365 (1176)
T ss_pred cccccCCceEEEEEcc----------cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH--
Confidence 3334445555555433 23445666665543 589999999888 9999999999999999999999
Q ss_pred HHHHHHHHHHhCCCccEEEE----ecccccccCCCC-ccEEEEecCCC------CHhHHHHHhhccCC
Q psy8497 302 KARLASLDSFKRGKVRILVT----TDLAARGIDAAN-VDLVINLEIPH------DAATYLHRMGRAGR 358 (2355)
Q Consensus 302 EERqeILErFRSGEIdVLVS----TSALGEGLDLPa-VDTVIIyDSP~------SPqSYIQRIGRAGR 358 (2355)
...++.|++|+++|||| |+++++|||+|. +++||+|+.|. ....+.+++||+..
T Consensus 366 ---~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 ---ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred ---HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459999999999999 689999999999 89999999998 66789999999975
No 72
>PRK14701 reverse gyrase; Provisional
Probab=99.97 E-value=1.9e-29 Score=335.37 Aligned_cols=315 Identities=17% Similarity=0.196 Sum_probs=234.1
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+.+.+.. +|| .|+++|.++++.+++++++++.+|||+|||++++++++.... .+.++|||+||++|+.|+.+.+
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~----~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL----KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh----cCCeEEEEECHHHHHHHHHHHH
Confidence 6777776 899 799999999999999999999999999999865555443322 4678999999999999999999
Q ss_pred HHHhcccC-CcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc------
Q psy8497 111 RSVGAHVK-NLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN------ 175 (2355)
Q Consensus 111 REFgk~AP-gLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN------ 175 (2355)
+.++.... ++.+..++|+...... ...++|||+||+.|.+.+... . ...+++|||||||+|+.
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccc
Confidence 99876542 4677788888654321 124899999999887766532 2 26789999999999976
Q ss_pred -----cChHHHHHH----HHH----------------------hCCCCce-EEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 176 -----TGFVEDITW----IYS----------------------QLPPMKQ-MLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 176 -----~GF~SrLee----ILs----------------------~LppnrQ-ILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
.+|...+.. ++. .++...| ++++|||++... ....++..+..+.+.
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeEEEec
Confidence 356555543 321 2344455 567999998531 122334555555555
Q ss_pred CCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEccccc---HHHHHHHHHhcCCccEEeeCCCC
Q psy8497 224 DATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLR---PEVICENLANANFGAEYLSGAQD 300 (2355)
Q Consensus 224 see~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKm---AEiLADyLrErGIKVarLHGgMS 300 (2355)
........+.+.+...... ....|+.++... ...+||||++++. ++.|+.+|...|+++..+||+
T Consensus 299 ~~~~~lr~i~~~yi~~~~~---------~k~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEKI---------IKEHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred CCCCCCCCcEEEEEECCHH---------HHHHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 5444445555555443221 123566666555 3589999999886 489999999999999999984
Q ss_pred HHHHHHHHHHHhCCCccEEEEe----cccccccCCCC-ccEEEEecCCC---CHhHHHHH-------------hhccCCC
Q psy8497 301 QKARLASLDSFKRGKVRILVTT----DLAARGIDAAN-VDLVINLEIPH---DAATYLHR-------------MGRAGRY 359 (2355)
Q Consensus 301 qEERqeILErFRSGEIdVLVST----SALGEGLDLPa-VDTVIIyDSP~---SPqSYIQR-------------IGRAGRi 359 (2355)
|..+++.|++|+++||||| +++++|||+|. |+.||+++.|. +...|.|. +|||+|.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8899999999999999999 48999999999 99999999998 76655554 4888888
Q ss_pred CCccEEEEEEc
Q psy8497 360 GTRGLVITIVS 370 (2355)
Q Consensus 360 GQkGkVIVLVS 370 (2355)
|.+..+++...
T Consensus 444 g~~~~~~~~~~ 454 (1638)
T PRK14701 444 GIPIEGVLDVF 454 (1638)
T ss_pred CCcchhHHHhH
Confidence 87766653333
No 73
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=4.3e-29 Score=318.10 Aligned_cols=343 Identities=18% Similarity=0.298 Sum_probs=259.8
Q ss_pred cccCCcHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 24 FEeLlLkpLLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
|..+....+...+.+.|+..|+.+|.+|+..+.+|+++||+.+||||||++|++||+..+.+. ...++|||.||++|+
T Consensus 51 ~~~~~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~--~~a~AL~lYPtnALa 128 (851)
T COG1205 51 FPELRDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD--PSARALLLYPTNALA 128 (851)
T ss_pred chhhhhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC--cCccEEEEechhhhH
Confidence 444433447888889999999999999999999999999999999999999999999999863 344899999999999
Q ss_pred HHHHHHHHHHhcccC-CcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHh----hcccCcCceEEEecccchhc
Q psy8497 104 VQITDVVRSVGAHVK-NLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKL----KYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 104 qQ~anwLREFgk~AP-gLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdr----r~LdLSkIdLLIVDEAHRLk 174 (2355)
+.+.+.++++....+ .+.+..|+|+..-... ...++||+|||+||..++.. -.+.+..+.+|||||+|...
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999988886 6899999999876544 45699999999999774443 22335678999999999764
Q ss_pred ccChHHHH-------HHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 175 NTGFVEDI-------TWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 175 N~GF~SrL-------eeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
.. |++.+ ..++...+...|+|++|||+.... +....+....+...+. ........+.++...+.......
T Consensus 209 Gv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 209 GV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred cc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhh
Confidence 32 33444 344444456789999999998543 4444444444444222 22333344444444442111111
Q ss_pred ----hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHH----HHHHhcC----CccEEeeCCCCHHHHHHHHHHHhCCC
Q psy8497 248 ----RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVIC----ENLANAN----FGAEYLSGAQDQKARLASLDSFKRGK 315 (2355)
Q Consensus 248 ----t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLA----DyLrErG----IKVarLHGgMSqEERqeILErFRSGE 315 (2355)
........+...+-. ..-++|+|+.++++++.+. ..+...+ ..+..++++|..++|.+++..|+.|+
T Consensus 286 ~~r~s~~~~~~~~~~~~~~-~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 286 SIRRSALAELATLAALLVR-NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred hcccchHHHHHHHHHHHHH-cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 111122223333222 2359999999999999986 4444445 56888999999999999999999999
Q ss_pred ccEEEEecccccccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 316 VRILVTTDLAARGIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 316 IdVLVSTSALGEGLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
+.++++|++++.|||+..++.||....|. +..+++|++|||||.++...++++...+
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 99999999999999999999999999999 8999999999999999877777777643
No 74
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.97 E-value=8.1e-29 Score=314.70 Aligned_cols=311 Identities=19% Similarity=0.247 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEE
Q psy8497 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYF 125 (2355)
Q Consensus 46 PYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvy 125 (2355)
.+-.+.+..+.+++++||.+|||+|||+++.++++.... ..+++||++|++.++.|+.+.+.+......+..|.+.
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 334466777778889999999999999999888876432 2358999999999999999998765444446777777
Q ss_pred ECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccCh-HHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 126 IGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGF-VEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 126 tGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~GF-~SrLeeILs~LppnrQILLLSATLS 203 (2355)
++..... .....|+|+|+++|.+++... ..+..+++|||||+|. ..+..+ ...+..++..++...|+|+||||+.
T Consensus 84 vr~~~~~--~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 84 MRAESKV--GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred ecCcccc--CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 7655422 223579999999999888754 4689999999999996 444332 3344556667788899999999998
Q ss_pred hhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHH
Q psy8497 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICE 283 (2355)
Q Consensus 204 ~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLAD 283 (2355)
... +..++.++..+...... ..+.+.+..++.. .. ........+..++.. ..+.+|||++++..++.+++
T Consensus 161 ~~~---l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~--~~-~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 161 NDR---LQQLLPDAPVIVSEGRS---FPVERRYQPLPAH--QR-FDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred HHH---HHHhcCCCCEEEecCcc---ccceEEeccCchh--hh-HHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHH
Confidence 653 34556554444433221 2234433322211 11 001111234444443 34789999999999999999
Q ss_pred HHHh---cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC----------------
Q psy8497 284 NLAN---ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH---------------- 344 (2355)
Q Consensus 284 yLrE---rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~---------------- 344 (2355)
.|.. .++.+..+||+|+..+|.+++..|.+|..+|||||++++.|||||+|++||.++.+.
T Consensus 231 ~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 310 (812)
T PRK11664 231 QLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQ 310 (812)
T ss_pred HHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEE
Confidence 9987 578899999999999999999999999999999999999999999999999977653
Q ss_pred --CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 345 --DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 345 --SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|..+++||+|||||. .+|.||.+++..+.
T Consensus 311 ~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 311 RISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred eechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 346899999999997 79999999976544
No 75
>KOG0329|consensus
Probab=99.97 E-value=1.6e-30 Score=289.49 Aligned_cols=319 Identities=34% Similarity=0.565 Sum_probs=270.2
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
...|..++++| |++++-..||..|..+|.++||...-|.+++.+|..|.|||.+|+++.|+.+. .....-.+||+|.+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie-pv~g~vsvlvmcht 119 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE-PVDGQVSVLVMCHT 119 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC-CCCCeEEEEEEecc
Confidence 45788999999 99999999999999999999999999999999999999999999999888776 33335568999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
++|+-|+.+....|.+..|++++.+++|+..+.... .-++|+|+||.+++.+.+.+.+.+..+..+|+|||+.++.
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH
Confidence 999999999999999999999999999998765432 2489999999999999999999999999999999998774
Q ss_pred -cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCcc-ccccceEEEEeccCCCCCcchhhhHH
Q psy8497 176 -TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATR-PLLGVKQLVALIPECKNPSLRYVDEE 253 (2355)
Q Consensus 176 -~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~-~~seVrQvVvqVpe~kn~sLt~lsKk 253 (2355)
-.....+..|....|...|++.+|||++.++.....+++.+|..+.+..+.. ....++|.+..+.+. .+.
T Consensus 200 ~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~--------eKN 271 (387)
T KOG0329|consen 200 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKEN--------EKN 271 (387)
T ss_pred HHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhh--------hhh
Confidence 3467889999999999999999999999999999999999998888776543 334555555544433 344
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
..|.++|......+|+||+.++..+. | +.+ ||+|++.++|||+..
T Consensus 272 rkl~dLLd~LeFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdier 316 (387)
T KOG0329|consen 272 RKLNDLLDVLEFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIER 316 (387)
T ss_pred hhhhhhhhhhhhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCccc
Confidence 66777777777889999998766510 2 223 899999999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHH-HHHHHHHh
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV-KFHSLMGE 383 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVE-eIEsLrRe 383 (2355)
++.||+||.|-++..|++|+|||||.|.+|.+|.|++..... .+..+...
T Consensus 317 vNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdR 367 (387)
T KOG0329|consen 317 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDR 367 (387)
T ss_pred ceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHh
Confidence 999999999999999999999999999999999999765443 34444333
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=4.9e-28 Score=282.92 Aligned_cols=293 Identities=16% Similarity=0.207 Sum_probs=200.2
Q ss_pred HHHHHHHHHHcCCc--EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc---CCcE
Q psy8497 47 IQMAAFPYVLNGYD--AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV---KNLH 121 (2355)
Q Consensus 47 YQeEALn~LLSGRN--VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A---PgLr 121 (2355)
+|.++++.++.+.+ +||++|||+|||++++++++. ...++|||+|+++|+.|+.+.++++.... .+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~-------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH-------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN 73 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 59999999998874 788999999999999988873 13468999999999999999988886433 2566
Q ss_pred EEEEECCcccc----C--------------------CCCCCcEEEECHHHHHHHHHhhcc--------cCcCceEEEecc
Q psy8497 122 VDYFIGGTQVE----R--------------------PKRPVQIVVGSPGRIKQMIKLKYL--------NMDSVRLFIMDE 169 (2355)
Q Consensus 122 VVvytGGkq~r----k--------------------qirq~DILVTTPErLLDLLdrr~L--------dLSkIdLLIVDE 169 (2355)
+..+.|....+ . ....+.|++|||++|..++..... .+..+++|||||
T Consensus 74 v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE 153 (357)
T TIGR03158 74 LLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDE 153 (357)
T ss_pred EEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEec
Confidence 77777752211 0 012478999999998765543111 146889999999
Q ss_pred cchhcccCh-----HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh--ccCCeeeccCC-----------Cccc---
Q psy8497 170 ADKLINTGF-----VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY--MVDPLLIRPED-----------ATRP--- 228 (2355)
Q Consensus 170 AHRLkN~GF-----~SrLeeILs~LppnrQILLLSATLS~EILElLkKf--LrdPvIIrVes-----------ee~~--- 228 (2355)
+|.+..... ......++.......++|+||||++......+... +..+....... ....
T Consensus 154 ~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~ 233 (357)
T TIGR03158 154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQS 233 (357)
T ss_pred ccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccc
Confidence 999775331 12333444444445799999999998777777654 33332221111 0000
Q ss_pred ---c-ccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC--CccEEeeCCCCHH
Q psy8497 229 ---L-LGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN--FGAEYLSGAQDQK 302 (2355)
Q Consensus 229 ---~-seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG--IKVarLHGgMSqE 302 (2355)
. ..+...+...... ...........+.+.+......++||||++++.++.++..|.+.+ +.+..+||.+++.
T Consensus 234 ~~~~~~~i~~~~~~~~~~--~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~ 311 (357)
T TIGR03158 234 FRPVLPPVELELIPAPDF--KEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKK 311 (357)
T ss_pred cceeccceEEEEEeCCch--hHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHH
Confidence 0 1222222221111 000011111223333333455799999999999999999999865 5788899999999
Q ss_pred HHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccC
Q psy8497 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAG 357 (2355)
Q Consensus 303 ERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAG 357 (2355)
+|.+++ ++.|||||+++++|||++.+ +|| ++ |.++..|+||+||+|
T Consensus 312 ~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 312 DRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 887653 78999999999999999976 565 45 889999999999986
No 77
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=4.5e-28 Score=290.76 Aligned_cols=300 Identities=19% Similarity=0.260 Sum_probs=210.1
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
..|++||.+++..+.. .+.+||++|||+|||++++.++... . ..+|||||+++|+.||.+.+..+....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-~------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-K------RSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-c------CCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 4799999999999998 7889999999999998887655433 2 239999999999999987777764321
Q ss_pred CCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 118 KNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
..+..+.|+...... ..|+|+|++++........+....+++|||||||++....+.. +...+.....+|+
T Consensus 108 --~~~g~~~~~~~~~~~---~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~----~~~~~~~~~~~LG 178 (442)
T COG1061 108 --DEIGIYGGGEKELEP---AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR----ILELLSAAYPRLG 178 (442)
T ss_pred --cccceecCceeccCC---CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH----HHHhhhcccceee
Confidence 134444444433222 5699999999865422223334579999999999988754333 2223222222899
Q ss_pred EEeccChhHHHHHH--HhccCCeeeccCCC----ccccccceEEEEeccCCCCCcc------------------------
Q psy8497 198 VSATYSHDNLATLQ--KYMVDPLLIRPEDA----TRPLLGVKQLVALIPECKNPSL------------------------ 247 (2355)
Q Consensus 198 LSATLS~EILElLk--KfLrdPvIIrVese----e~~~seVrQvVvqVpe~kn~sL------------------------ 247 (2355)
|||||.......+. ..+..+.++..... .....+.......+........
T Consensus 179 LTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (442)
T COG1061 179 LTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENE 258 (442)
T ss_pred eccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHH
Confidence 99998754421111 11223344433321 1122222222222211100000
Q ss_pred ------hhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEE
Q psy8497 248 ------RYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320 (2355)
Q Consensus 248 ------t~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLV 320 (2355)
....+...+..++... ...++|||+..+..+..++..|...++ +..+.+..+..+|..+++.|+.|.+++||
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv 337 (442)
T COG1061 259 ARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLV 337 (442)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 0011123333334333 356999999999999999999998888 89999999999999999999999999999
Q ss_pred EecccccccCCCCccEEEEecCCCCHhHHHHHhhccCC
Q psy8497 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGR 358 (2355)
Q Consensus 321 STSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGR 358 (2355)
++.++.+|+|+|+++++|+..+..|+..|+||+||..|
T Consensus 338 ~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 338 TVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.96 E-value=1.2e-27 Score=312.62 Aligned_cols=287 Identities=18% Similarity=0.265 Sum_probs=208.2
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
+...+.......|+++|..+++.++.++++++++|||+|||+ +.++++..+.. .+.++|||+||++|+.|+.+.++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHH
Confidence 666666644458999999999999999999999999999996 55555555542 36889999999999999999999
Q ss_pred HHhcccCCcE---EEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc-----
Q psy8497 112 SVGAHVKNLH---VDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN----- 175 (2355)
Q Consensus 112 EFgk~APgLr---VVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN----- 175 (2355)
.+.... ++. +.+++|+..... ....++|||+||+.|.+.+.. +.. .+++|||||||+|++
T Consensus 143 ~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 143 SLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccccH
Confidence 997654 333 335667654321 112489999999999877653 222 789999999999987
Q ss_pred ------cChHHH-HHHH----------------------HHhCCCCce--EEEEEecc-ChhHHHHHHHhccCCeeeccC
Q psy8497 176 ------TGFVED-ITWI----------------------YSQLPPMKQ--MLVVSATY-SHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 176 ------~GF~Sr-LeeI----------------------Ls~LppnrQ--ILLLSATL-S~EILElLkKfLrdPvIIrVe 223 (2355)
.+|... +..+ +..++...| ++++|||+ +..... .++.....+.+.
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~ 295 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVG 295 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEec
Confidence 455442 3332 223344444 56789994 433322 223333334444
Q ss_pred CCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEccc---ccHHHHHHHHHhcCCccEEeeCCCC
Q psy8497 224 DATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQ---LRPEVICENLANANFGAEYLSGAQD 300 (2355)
Q Consensus 224 see~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTR---KmAEiLADyLrErGIKVarLHGgMS 300 (2355)
........+.+.+..... ....|..++... ..++||||+++ +.++.|+.+|...|+++..+||+|+
T Consensus 296 ~~~~~~r~I~~~~~~~~~----------~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 296 GGSDTLRNVVDVYVEDED----------LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred CccccccceEEEEEeccc----------HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 333333444444432211 123455555544 35899999999 9999999999999999999999997
Q ss_pred HHHHHHHHHHHhCCCccEEEEe----cccccccCCCC-ccEEEEecCCC
Q psy8497 301 QKARLASLDSFKRGKVRILVTT----DLAARGIDAAN-VDLVINLEIPH 344 (2355)
Q Consensus 301 qEERqeILErFRSGEIdVLVST----SALGEGLDLPa-VDTVIIyDSP~ 344 (2355)
+.+++.|++|+++||||| +++++|||+|. +++||+|+.|.
T Consensus 365 ----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 ----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 378999999999999995 89999999999 89999999884
No 79
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6e-27 Score=295.25 Aligned_cols=328 Identities=16% Similarity=0.182 Sum_probs=228.6
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|+++|..++..+.+|+ |+.+.||+|||+++++|++.... .+..++||+|++.||.|..+++..+..++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al----~G~~v~VvTpt~~LA~qd~e~~~~l~~~l- 146 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL----EGKGVHLITVNDYLAKRDAEEMGQVYEFL- 146 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH----cCCCeEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 576 89999999999888776 99999999999999999985544 37789999999999999999999999888
Q ss_pred CcEEEEEECCcc-cc--CCCCCCcEEEECHHHH-HHHHHhhc------ccCcCceEEEecccchhc-cc-----------
Q psy8497 119 NLHVDYFIGGTQ-VE--RPKRPVQIVVGSPGRI-KQMIKLKY------LNMDSVRLFIMDEADKLI-NT----------- 176 (2355)
Q Consensus 119 gLrVVvytGGkq-~r--kqirq~DILVTTPErL-LDLLdrr~------LdLSkIdLLIVDEAHRLk-N~----------- 176 (2355)
++.+.++.|+.. .. .....++|+++|+..| .+++.... ..+..+.++||||+|.++ +.
T Consensus 147 Gl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~ 226 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKP 226 (790)
T ss_pred CCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCC
Confidence 999999999876 21 2334489999999887 45444322 345788999999999865 21
Q ss_pred ----ChHHHHHHHHHhCCCC--------ceEEEEEecc--------------Ch-------hHHHHHHH-hc-cC--Cee
Q psy8497 177 ----GFVEDITWIYSQLPPM--------KQMLVVSATY--------------SH-------DNLATLQK-YM-VD--PLL 219 (2355)
Q Consensus 177 ----GF~SrLeeILs~Lppn--------rQILLLSATL--------------S~-------EILElLkK-fL-rd--PvI 219 (2355)
.++..+..++..+... .+.+.+|..- .. .+...+.. ++ .. .++
T Consensus 227 ~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYi 306 (790)
T PRK09200 227 RVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYI 306 (790)
T ss_pred ccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEE
Confidence 1234444444444321 1223333310 00 00011110 00 00 000
Q ss_pred e------ccCCC-c----------------------------c----------------------c----cccc----eE
Q psy8497 220 I------RPEDA-T----------------------------R----------------------P----LLGV----KQ 234 (2355)
Q Consensus 220 I------rVese-e----------------------------~----------------------~----~seV----rQ 234 (2355)
+ .+... . . . ...+ ..
T Consensus 307 V~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l 386 (790)
T PRK09200 307 VYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNM 386 (790)
T ss_pred EECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCC
Confidence 0 00000 0 0 0 0000 01
Q ss_pred EEEeccCCCC---------CcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 235 LVALIPECKN---------PSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 235 vVvqVpe~kn---------~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
.+..+|..+. .......+...|...+.. ....++||||.+++.++.|...|...|+.+..|||.+...+
T Consensus 387 ~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e 466 (790)
T PRK09200 387 EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKE 466 (790)
T ss_pred cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHH
Confidence 1122221110 011123444666666644 24569999999999999999999999999999999999988
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCC---CCcc-----EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHH
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDA---ANVD-----LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV 375 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDL---PaVD-----TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVE 375 (2355)
+..+...+..| .|||||+++++|+|+ |.|. +||+++.|.+...|+|++||+||.|.+|.++.|++..+.-
T Consensus 467 ~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l 544 (790)
T PRK09200 467 AQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDL 544 (790)
T ss_pred HHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHH
Confidence 88888777766 799999999999999 6898 9999999999999999999999999999999999765443
Q ss_pred H
Q psy8497 376 K 376 (2355)
Q Consensus 376 e 376 (2355)
+
T Consensus 545 ~ 545 (790)
T PRK09200 545 L 545 (790)
T ss_pred H
Confidence 3
No 80
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=6.1e-27 Score=290.62 Aligned_cols=318 Identities=17% Similarity=0.175 Sum_probs=223.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|+++|..+++.++.|+ |..+.||+|||++++++++.... .+..++||+|++.||.|..+++..++..+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al----~G~~v~VvTptreLA~qdae~~~~l~~~l- 171 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL----AGLPVHVITVNDYLAERDAELMRPLYEAL- 171 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh----cCCeEEEEcCcHHHHHHHHHHHHHHHhhc-
Confidence 565 88999999999999998 99999999999999999987655 36789999999999999999999999887
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHH-HHHHHhhc-------------------------ccCcCceEEEeccc
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRI-KQMIKLKY-------------------------LNMDSVRLFIMDEA 170 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErL-LDLLdrr~-------------------------LdLSkIdLLIVDEA 170 (2355)
++.+.+++|+.... .....++|+|+|...| .++|.... .-.+.+.++||||+
T Consensus 172 Glsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 172 GLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred CCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 89999999986432 2234589999998765 34443221 12356789999999
Q ss_pred chhc-cc-----------------ChHHHHHHHHHhCCCC--------c-------------------------------
Q psy8497 171 DKLI-NT-----------------GFVEDITWIYSQLPPM--------K------------------------------- 193 (2355)
Q Consensus 171 HRLk-N~-----------------GF~SrLeeILs~Lppn--------r------------------------------- 193 (2355)
+.++ +. .++..+..+...+... .
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 9753 11 1222222222222111 1
Q ss_pred ------------------------------------------------------------------------------eE
Q psy8497 194 ------------------------------------------------------------------------------QM 195 (2355)
Q Consensus 194 ------------------------------------------------------------------------------QI 195 (2355)
++
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 12
Q ss_pred EEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcC--CCCeEEEEEc
Q psy8497 196 LVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT--PFNQCVIFSN 273 (2355)
Q Consensus 196 LLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl--~kgRVLVFSQ 273 (2355)
.+||||......++...|..+++.+...... .....+.+..+ ....+...|...+... ...++||||+
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~--------t~~~K~~aL~~~i~~~~~~~~pvLIft~ 481 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFL--------TAAAKWAAVAARVRELHAQGRPVLVGTR 481 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEe--------CHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3344454433333333333333222221111 00011111111 1123445566666442 2357999999
Q ss_pred ccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC---Ccc-----EEEEecCCCC
Q psy8497 274 YQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA---NVD-----LVINLEIPHD 345 (2355)
Q Consensus 274 TRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP---aVD-----TVIIyDSP~S 345 (2355)
++..++.|+..|...|+.+..|||.+...+ ..+..|..+...|||||+++++|+||+ .|. +||+++.|.+
T Consensus 482 t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s 559 (656)
T PRK12898 482 SVAASERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDS 559 (656)
T ss_pred cHHHHHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCC
Confidence 999999999999999999999999876544 444556655667999999999999999 665 9999999999
Q ss_pred HhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 346 AATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
...|+|++||+||.|.+|.++.|++..+.-+
T Consensus 560 ~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 560 ARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred HHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 9999999999999999999999998755433
No 81
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.95 E-value=1.7e-26 Score=289.56 Aligned_cols=326 Identities=15% Similarity=0.150 Sum_probs=217.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.++|||.+++..+.-.+..|+.++||+|||+++++|++.... .+..++||+|++.||.|+.+|+..+..++ ++.+
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL----~g~~V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv 142 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL----TGKGAMLVTTNDYLAKRDAEEMGPVYEWL-GLTV 142 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh----cCCceEEeCCCHHHHHHHHHHHHHHHhhc-CCcE
Confidence 346666666665555555799999999999999999865544 35569999999999999999999998888 8888
Q ss_pred EEEECCccc-------cCCCCCCcEEEECHHHH-HHHHHhh------cccCcCceEEEecccchhccc------------
Q psy8497 123 DYFIGGTQV-------ERPKRPVQIVVGSPGRI-KQMIKLK------YLNMDSVRLFIMDEADKLINT------------ 176 (2355)
Q Consensus 123 VvytGGkq~-------rkqirq~DILVTTPErL-LDLLdrr------~LdLSkIdLLIVDEAHRLkN~------------ 176 (2355)
.+.+++... ......++|+++||..| .+++... ...+..+.++||||||.++-.
T Consensus 143 ~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~ 222 (762)
T TIGR03714 143 SLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAP 222 (762)
T ss_pred EEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCC
Confidence 887765211 11224589999999998 4555332 234678889999999987421
Q ss_pred ----ChHHHHHHHHHhCCCC--------ceEEEEEecc-------------C-hh-------HHHHHHH-h-cc-C-Cee
Q psy8497 177 ----GFVEDITWIYSQLPPM--------KQMLVVSATY-------------S-HD-------NLATLQK-Y-MV-D-PLL 219 (2355)
Q Consensus 177 ----GF~SrLeeILs~Lppn--------rQILLLSATL-------------S-~E-------ILElLkK-f-Lr-d-PvI 219 (2355)
.++..+..+...+... .+.+.||-.- . .. +...+.. + +. + .++
T Consensus 223 ~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYi 302 (762)
T TIGR03714 223 RVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYV 302 (762)
T ss_pred ccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 1234444444544332 1223333210 0 00 0000000 0 00 0 000
Q ss_pred e------ccCC-Cc----------------------------c----------------------c----cccc----eE
Q psy8497 220 I------RPED-AT----------------------------R----------------------P----LLGV----KQ 234 (2355)
Q Consensus 220 I------rVes-ee----------------------------~----------------------~----~seV----rQ 234 (2355)
+ .+.. .. . . ...+ ..
T Consensus 303 V~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l 382 (762)
T TIGR03714 303 VTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSL 382 (762)
T ss_pred EECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCC
Confidence 0 0000 00 0 0 0000 00
Q ss_pred EEEeccCCC---------CCcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 235 LVALIPECK---------NPSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 235 vVvqVpe~k---------n~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
-+..+|..+ ..+.....+..++...+.. ....+|||||.++..++.|...|...|+.+..|||.+.+.+
T Consensus 383 ~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E 462 (762)
T TIGR03714 383 SVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKE 462 (762)
T ss_pred CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHH
Confidence 111222111 1111222445566665543 34569999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCC---------CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAA---------NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLP---------aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
+..+...|+.| .|+|||+++++|+||+ .+.+||.++.|..... +|++||+||.|.+|.++.|++..+.
T Consensus 463 ~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 463 AQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred HHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 88887777666 7999999999999999 8999999999987655 9999999999999999999987554
Q ss_pred HH
Q psy8497 375 VK 376 (2355)
Q Consensus 375 Ee 376 (2355)
-+
T Consensus 540 l~ 541 (762)
T TIGR03714 540 LI 541 (762)
T ss_pred hh
Confidence 43
No 82
>KOG0947|consensus
Probab=99.95 E-value=8.1e-27 Score=288.38 Aligned_cols=328 Identities=18% Similarity=0.175 Sum_probs=242.4
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+.| +|-.+|++||-.+.++.+|+|+|+|.+|||+++-.+|...-. ...+++|..|.++|.+|.++.|++.+..
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~----h~TR~iYTSPIKALSNQKfRDFk~tF~D- 366 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK----HMTRTIYTSPIKALSNQKFRDFKETFGD- 366 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh----hccceEecchhhhhccchHHHHHHhccc-
Confidence 3555 899999999999999999999999999999999988865444 3678999999999999999999987543
Q ss_pred CCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 118 KNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
+.+++|+.+.... +.++|+|.|.|..++.+..--++++.+||+||+|.+-+...+..|++++-.+|...++|+
T Consensus 367 ----vgLlTGDvqinPe---AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~Il 439 (1248)
T KOG0947|consen 367 ----VGLLTGDVQINPE---ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFIL 439 (1248)
T ss_pred ----cceeecceeeCCC---cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEE
Confidence 3489999887654 679999999999999998877899999999999999888888999999999999999999
Q ss_pred EEeccChhHHHHHHHhc-cCCeeeccCCCccccccceEEEEe----c----------cC----CCCC-------------
Q psy8497 198 VSATYSHDNLATLQKYM-VDPLLIRPEDATRPLLGVKQLVAL----I----------PE----CKNP------------- 245 (2355)
Q Consensus 198 LSATLS~EILElLkKfL-rdPvIIrVesee~~~seVrQvVvq----V----------pe----~kn~------------- 245 (2355)
||||.++.. ++..+.- .+...+.+......+.++.+++.. + .. .+..
T Consensus 440 LSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~ 518 (1248)
T KOG0947|consen 440 LSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKS 518 (1248)
T ss_pred EeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccc
Confidence 999998543 3333221 111111111111111111111100 0 00 0000
Q ss_pred ----------------cchh-----------h--hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC-------
Q psy8497 246 ----------------SLRY-----------V--DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN------- 289 (2355)
Q Consensus 246 ----------------sLt~-----------l--sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG------- 289 (2355)
...- . .....|+..|.....-++||||-+++.|+..+++|....
T Consensus 519 ~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EK 598 (1248)
T KOG0947|consen 519 DARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEK 598 (1248)
T ss_pred cccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhH
Confidence 0000 0 012334444444444589999999999999999998532
Q ss_pred --------------------------------CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEE
Q psy8497 290 --------------------------------FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLV 337 (2355)
Q Consensus 290 --------------------------------IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTV 337 (2355)
-+++++||++-+--+.-+.-.|..|-++||+||.++++|||+|+-.+|
T Consensus 599 seV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvV 678 (1248)
T KOG0947|consen 599 SEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVV 678 (1248)
T ss_pred HHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEE
Confidence 357889999999999999999999999999999999999999977666
Q ss_pred EEecCC---------CCHhHHHHHhhccCCCC--CccEEEEEEcc--cCHHHHHHH
Q psy8497 338 INLEIP---------HDAATYLHRMGRAGRYG--TRGLVITIVSA--ESLVKFHSL 380 (2355)
Q Consensus 338 IIyDSP---------~SPqSYIQRIGRAGRiG--QkGkVIVLVSs--dDVEeIEsL 380 (2355)
+ -..- ..|-+|.||+|||||.| ..|.||++... .....+..+
T Consensus 679 F-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 679 F-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred e-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhH
Confidence 5 2221 27899999999999998 56777777643 344444444
No 83
>KOG0351|consensus
Probab=99.95 E-value=2e-27 Score=303.12 Aligned_cols=330 Identities=18% Similarity=0.234 Sum_probs=252.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
..-....+|...+++-|.++|..++.|++++|.+|||.||++||.+|++-. .+-+|||.|+.+|++.+...+.
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-------~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-------GGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-------CCceEEeccHHHHHHHHHHhhh
Confidence 444555689999999999999999999999999999999999999998632 4579999999999877777764
Q ss_pred HHhcccCCcEEEEEECCccccC----------CCCCCcEEEECHHHHHHHH--HhhcccCcC---ceEEEecccchhccc
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVER----------PKRPVQIVVGSPGRIKQMI--KLKYLNMDS---VRLFIMDEADKLINT 176 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rk----------qirq~DILVTTPErLLDLL--drr~LdLSk---IdLLIVDEAHRLkN~ 176 (2355)
.. ++....+.+...... ....++|+..|||++...- ......+.. +.++||||||.+..|
T Consensus 326 ~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 326 KK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 44 456666666654421 1123889999999875322 112223333 789999999999988
Q ss_pred C--h---HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhcc--CCeeeccCCCccccccceEEEEeccCCCCCcchh
Q psy8497 177 G--F---VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV--DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRY 249 (2355)
Q Consensus 177 G--F---~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLr--dPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ 249 (2355)
+ | +..+..+....+. ..+|.||||....+.+.+...|. ++.++.... ...++... ..++.. .
T Consensus 401 gHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf---nR~NL~ye--V~~k~~-----~ 469 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFKSSF---NRPNLKYE--VSPKTD-----K 469 (941)
T ss_pred cccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceecccC---CCCCceEE--EEeccC-----c
Confidence 7 3 4555555555554 88999999999888776665443 333222211 11122222 222210 0
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccccc
Q psy8497 250 VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGI 329 (2355)
Q Consensus 250 lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGL 329 (2355)
......+..+....+....||||.++++|+.++..|...+++++.+|++|+..+|..+...|..++++|+|||=|.|+||
T Consensus 470 ~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGI 549 (941)
T KOG0351|consen 470 DALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGI 549 (941)
T ss_pred cchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCC
Confidence 01122233333444556899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 330 DLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
|.|+|+.||+|..|.+.+.|.|-+|||||.|....+++|+...+...+..++..-
T Consensus 550 dK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 550 DKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999998888888776644
No 84
>KOG0388|consensus
Probab=99.95 E-value=3.2e-28 Score=292.99 Aligned_cols=324 Identities=15% Similarity=0.228 Sum_probs=229.6
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|..||.++|+||. +|-+.||+++||+|||++ .++++.+|.+...-.+++|||+|.++| .+|..++..++|
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~nIwGPFLVVtpaStL----~NWaqEisrFlP 641 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETHNIWGPFLVVTPASTL----HNWAQEISRFLP 641 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhccCCCceEEeehHHHH----hHHHHHHHHhCc
Confidence 88999999999987 478899999999999954 558888999888889999999999999 899999999999
Q ss_pred CcEEEEEECCccccCCC-------------CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHH
Q psy8497 119 NLHVDYFIGGTQVERPK-------------RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqi-------------rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeI 185 (2355)
.+++..|.|+...+..+ ..++|+||||+.+. .+...+..-.|.++|+|||+.++... ..++..+
T Consensus 642 ~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvV--tDeky~qkvKWQYMILDEAQAIKSSs-S~RWKtL 718 (1185)
T KOG0388|consen 642 SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVV--TDEKYLQKVKWQYMILDEAQAIKSSS-SSRWKTL 718 (1185)
T ss_pred cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeee--chHHHHHhhhhhheehhHHHHhhhhh-hhHHHHH
Confidence 99999999998766432 33899999999873 33344455678899999999987542 3455555
Q ss_pred HHhCCCCceEEEEEeccChhHHHHHHHhc---------------------------------------------------
Q psy8497 186 YSQLPPMKQMLVVSATYSHDNLATLQKYM--------------------------------------------------- 214 (2355)
Q Consensus 186 Ls~LppnrQILLLSATLS~EILElLkKfL--------------------------------------------------- 214 (2355)
+.+-. ...|+||+||.++.++.++.+|
T Consensus 719 LsF~c--RNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRR 796 (1185)
T KOG0388|consen 719 LSFKC--RNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRR 796 (1185)
T ss_pred hhhhc--cceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHH
Confidence 54432 2346666665543322221110
Q ss_pred ----------------------------------------------------cCC-------------------------
Q psy8497 215 ----------------------------------------------------VDP------------------------- 217 (2355)
Q Consensus 215 ----------------------------------------------------rdP------------------------- 217 (2355)
..|
T Consensus 797 vKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S 876 (1185)
T KOG0388|consen 797 VKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVS 876 (1185)
T ss_pred HHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHh
Confidence 000
Q ss_pred -----eeeccCCC------------------------------c----------------cc------------------
Q psy8497 218 -----LLIRPEDA------------------------------T----------------RP------------------ 228 (2355)
Q Consensus 218 -----vIIrVese------------------------------e----------------~~------------------ 228 (2355)
+.+.++.. . ..
T Consensus 877 ~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p 956 (1185)
T KOG0388|consen 877 FGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNP 956 (1185)
T ss_pred CCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCc
Confidence 00000000 0 00
Q ss_pred ----------cc------cceEEEEeccCCC---------------------------------CCcchhhhHHHHHHHH
Q psy8497 229 ----------LL------GVKQLVALIPECK---------------------------------NPSLRYVDEEKKLVQL 259 (2355)
Q Consensus 229 ----------~s------eVrQvVvqVpe~k---------------------------------n~sLt~lsKkeaLLqL 259 (2355)
+. .....+...|... +.+++...++..|..+
T Consensus 957 ~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeL 1036 (1185)
T KOG0388|consen 957 ESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDEL 1036 (1185)
T ss_pred ccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHH
Confidence 00 0000000000000 0000111222333333
Q ss_pred HhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCcc-EEEEecccccccCCCCccE
Q psy8497 260 LSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR-ILVTTDLAARGIDAANVDL 336 (2355)
Q Consensus 260 Lerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEId-VLVSTSALGEGLDLPaVDT 336 (2355)
|... .+++||+|.++.+|++.+.+||..+++.+.+|+|.....+|..++..|...++. ||++|++++.||||.++++
T Consensus 1037 L~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADT 1116 (1185)
T KOG0388|consen 1037 LPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADT 1116 (1185)
T ss_pred HHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccce
Confidence 3332 357999999999999999999999999999999999999999999999987655 5899999999999999999
Q ss_pred EEEecCCCCHhHHHHHhhccCCCCCccE--EEEEEcccCHHH
Q psy8497 337 VINLEIPHDAATYLHRMGRAGRYGTRGL--VITIVSAESLVK 376 (2355)
Q Consensus 337 VIIyDSP~SPqSYIQRIGRAGRiGQkGk--VIVLVSsdDVEe 376 (2355)
||+||++|||..+.|++.||||.|+... |+.++...++++
T Consensus 1117 ViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1117 VIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred EEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 9999999999999999999999997654 555555555443
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=5.8e-26 Score=284.74 Aligned_cols=317 Identities=23% Similarity=0.247 Sum_probs=223.0
Q ss_pred CCcHHHHHHHHHHHcC---CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNG---YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG---RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg 119 (2355)
.|+++|.++++.+..+ .+++|.++||+|||.+|+.++...+. .+.++|||+|+++|+.|+.+.+++.+ +
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~----~g~~vLvLvPt~~L~~Q~~~~l~~~f----g 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA----QGKQALVLVPEIALTPQMLARFRARF----G 215 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHHHHHHHHHHh----C
Confidence 6999999999999874 67999999999999999988777665 26789999999999999999998864 4
Q ss_pred cEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-----h-HHHHHHH
Q psy8497 120 LHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-----F-VEDITWI 185 (2355)
Q Consensus 120 LrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-----F-~SrLeeI 185 (2355)
..+.+++|+..... .....+|||+|+..+ ++.+.++++|||||+|...-.. + ...+ .+
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-------~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~ 287 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-------FLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AV 287 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-------cccccCCCEEEEECCCccccccCcCCCCcHHHH-HH
Confidence 57888888754321 123478999999876 2457888999999999765322 1 1222 23
Q ss_pred HHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCc--cccccceEEEEeccCCC--CCcchhhhHHHHHHHHHh
Q psy8497 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDAT--RPLLGVKQLVALIPECK--NPSLRYVDEEKKLVQLLS 261 (2355)
Q Consensus 186 Ls~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee--~~~seVrQvVvqVpe~k--n~sLt~lsKkeaLLqLLe 261 (2355)
........++|++|||++.+....+.. .....+...... .....+ .++..-.... ............+.+.+.
T Consensus 288 ~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v-~~id~~~~~~~~~~~~ls~~l~~~i~~~l~ 364 (679)
T PRK05580 288 VRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEV-EIIDMRELLRGENGSFLSPPLLEAIKQRLE 364 (679)
T ss_pred HHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeE-EEEechhhhhhcccCCCCHHHHHHHHHHHH
Confidence 334456789999999998665544332 111112121111 111111 1111100000 001111223334444443
Q ss_pred cCCCCeEEEEEccc------------------------------------------------------------ccHHHH
Q psy8497 262 QTPFNQCVIFSNYQ------------------------------------------------------------LRPEVI 281 (2355)
Q Consensus 262 rl~kgRVLVFSQTR------------------------------------------------------------KmAEiL 281 (2355)
. +.++|||++.+ .-++.+
T Consensus 365 ~--g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 365 R--GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred c--CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 3 35788887642 145678
Q ss_pred HHHHHhc--CCccEEeeCCCC--HHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCC------------
Q psy8497 282 CENLANA--NFGAEYLSGAQD--QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHD------------ 345 (2355)
Q Consensus 282 ADyLrEr--GIKVarLHGgMS--qEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~S------------ 345 (2355)
++.|.+. +.++.++|+++. ..++..+++.|++|+++|||+|++++.|+|+|.+++|++++.+..
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~ 522 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERT 522 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHH
Confidence 8888876 778999999986 467899999999999999999999999999999999999887742
Q ss_pred HhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 346 AATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
.+.|+|++|||||.+..|.|++.....+...+..+
T Consensus 523 ~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 523 FQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred HHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 36799999999999999999999877665555544
No 86
>KOG0951|consensus
Probab=99.95 E-value=1.7e-26 Score=290.04 Aligned_cols=340 Identities=21% Similarity=0.237 Sum_probs=249.0
Q ss_pred CCCCCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCC-------CCCeEEEEcccHHHHHHHHHHH
Q psy8497 39 NGFVKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPV-------QQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~-------qggRVLILVPTRALAqQ~anwL 110 (2355)
.|...|.++|......++.+ .++++|||||+|||.++++.||+.+..... ...+++|++|+++|++.|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 46667999999999998876 579999999999999999999998875322 3457999999999999999888
Q ss_pred HHHhcccCCcEEEEEECCcccc-CCCCCCcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccChHHHHHHHHH
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVE-RPKRPVQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~r-kqirq~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs 187 (2355)
.+....+ ++.|.-.+|+.... ..+....|||||||...-.-+. +....+-++++||||+|.+-+. .++.++.|..
T Consensus 385 SkRla~~-GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLESIVa 462 (1674)
T KOG0951|consen 385 SKRLAPL-GITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLESIVA 462 (1674)
T ss_pred Hhhcccc-CcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHHHHHHH
Confidence 8877777 89999999987643 3455588999999987333322 1223456789999999977443 3355544443
Q ss_pred hC-------CCCceEEEEEeccChhHHHHHHHhcc-CCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHH
Q psy8497 188 QL-------PPMKQMLVVSATYSHDNLATLQKYMV-DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL 259 (2355)
Q Consensus 188 ~L-------ppnrQILLLSATLS~EILElLkKfLr-dPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqL 259 (2355)
.. ....++++||||+++.. ....|+. ++.-+........+.++.|-++-+..................++
T Consensus 463 Rt~r~ses~~e~~RlVGLSATLPNy~--DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKV 540 (1674)
T KOG0951|consen 463 RTFRRSESTEEGSRLVGLSATLPNYE--DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKV 540 (1674)
T ss_pred HHHHHhhhcccCceeeeecccCCchh--hhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHH
Confidence 32 34689999999999543 3333332 22222223333444555555555544433332233333556667
Q ss_pred HhcCCCCeEEEEEcccccHHHHHHHHHh-------------------------------------cCCccEEeeCCCCHH
Q psy8497 260 LSQTPFNQCVIFSNYQLRPEVICENLAN-------------------------------------ANFGAEYLSGAQDQK 302 (2355)
Q Consensus 260 Lerl~kgRVLVFSQTRKmAEiLADyLrE-------------------------------------rGIKVarLHGgMSqE 302 (2355)
+.....++||||+.+++..-..+..++. ..++++++|.+|...
T Consensus 541 m~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~ 620 (1674)
T KOG0951|consen 541 LEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRK 620 (1674)
T ss_pred HHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcc
Confidence 7777778999999999988777766662 126789999999999
Q ss_pred HHHHHHHHHhCCCccEEEEecccccccCCCCccEEE----EecCCC------CHhHHHHHhhccCCCC--CccEEEEEEc
Q psy8497 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI----NLEIPH------DAATYLHRMGRAGRYG--TRGLVITIVS 370 (2355)
Q Consensus 303 ERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVI----IyDSP~------SPqSYIQRIGRAGRiG--QkGkVIVLVS 370 (2355)
+|..+.+.|..|.++|||+|.++++|+|+|+.+++| .||+.. +|.+.+||+|||||.+ +.+..|++..
T Consensus 621 dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 621 DRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred hHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccC
Confidence 999999999999999999999999999999888777 566543 8999999999999976 5567777776
Q ss_pred ccCHHHHHHHHH
Q psy8497 371 AESLVKFHSLMG 382 (2355)
Q Consensus 371 sdDVEeIEsLrR 382 (2355)
..+...+..+++
T Consensus 701 ~se~qyyls~mn 712 (1674)
T KOG0951|consen 701 HSELQYYLSLMN 712 (1674)
T ss_pred chHhhhhHHhhh
Confidence 666666555443
No 87
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.9e-27 Score=283.58 Aligned_cols=263 Identities=17% Similarity=0.200 Sum_probs=191.2
Q ss_pred CCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEE
Q psy8497 191 PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVI 270 (2355)
Q Consensus 191 pnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLV 270 (2355)
...|+|++||||.....+....-+ -..++++.....+...++....++.+. ...+..... ...||||
T Consensus 385 ~~~q~i~VSATPg~~E~e~s~~~v-veQiIRPTGLlDP~ievRp~~~QvdDL----------~~EI~~r~~--~~eRvLV 451 (663)
T COG0556 385 KIPQTIYVSATPGDYELEQSGGNV-VEQIIRPTGLLDPEIEVRPTKGQVDDL----------LSEIRKRVA--KNERVLV 451 (663)
T ss_pred hcCCEEEEECCCChHHHHhccCce-eEEeecCCCCCCCceeeecCCCcHHHH----------HHHHHHHHh--cCCeEEE
Confidence 356999999999977666655322 235667777666666665554444332 122222222 3369999
Q ss_pred EEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC-----C
Q psy8497 271 FSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH-----D 345 (2355)
Q Consensus 271 FSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~-----S 345 (2355)
.+-|++|++.|.+||.+.|+++.++|+++...||.++|..++.|.++|||+.+.+.+|||+|+|.+|.|+|.++ |
T Consensus 452 TtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRs 531 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRS 531 (663)
T ss_pred EeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 8
Q ss_pred HhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH-----HHhhccccccccCCCccchhhhhhhHHHHHHHHHhCCccH
Q psy8497 346 AATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL-----MGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQ 420 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL-----rReLKLKLaLe~eIVPkgLlKeqiDw~~~LERILKnPLde 420 (2355)
..+++|.||||+| +..|+||+|.+..+..|-+.+ ++..++.+...+.++|+.+.+.+.+......... .
T Consensus 532 e~SLIQtIGRAAR-N~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~~~~~~~-~---- 605 (663)
T COG0556 532 ERSLIQTIGRAAR-NVNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEED-E---- 605 (663)
T ss_pred cchHHHHHHHHhh-ccCCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhhhhhhhhh-h----
Confidence 9999999999999 789999999999888886666 5577888889999999998888744332211100 0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccCCCChhhhhcccccccCccccccccccc
Q psy8497 421 AQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEE 472 (2355)
Q Consensus 421 eqErEELEQLeeElkKIEneLkeLga~~kEaaeKe~~KeAakWrdddGQlEE 472 (2355)
..............++.++.++.+...|.+++.+..|+.++.+++...++.+
T Consensus 606 ~~~~~~~~~~~~~~~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~ 657 (663)
T COG0556 606 YKAKIEKKASKMSKKELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKE 657 (663)
T ss_pred hhhhcccccccCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 0000000000001122233334445556677777778888887776655544
No 88
>KOG0392|consensus
Probab=99.95 E-value=4.3e-27 Score=295.17 Aligned_cols=338 Identities=20% Similarity=0.266 Sum_probs=227.6
Q ss_pred CCcHHHHHHHHHHH--c--CCcEEEEccCCchHHHHHHHHHHHHHHhc-----CCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVL--N--GYDAIVQSKSGTGKSIVFVVAALNKLIKL-----PVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 43 eLRPYQeEALn~LL--S--GRNVILAAPTGSGKTLVALIAILerL~ek-----r~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
.||.||+++++||. . +-+.|+|+.||+|||++.+-.+..-..+. .....+.|||||. +|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 67999999999974 2 45799999999999987664444333321 1134568999997 6766666666655
Q ss_pred hcccCCcEEEEEECCccccCCCC----CCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC
Q psy8497 114 GAHVKNLHVDYFIGGTQVERPKR----PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189 (2355)
Q Consensus 114 gk~APgLrVVvytGGkq~rkqir----q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L 189 (2355)
+|-++|..|+|....+...+ ..+|||++|+.+.+-.. .+.-..|.++|+||.|.++|.. ..+....+.+
T Consensus 1054 ---~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~k--tkl~kavkqL 1126 (1549)
T KOG0392|consen 1054 ---FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNSK--TKLTKAVKQL 1126 (1549)
T ss_pred ---cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecchH--HHHHHHHHHH
Confidence 45689999999877664433 37999999999875443 3345678899999999999865 6666666666
Q ss_pred CCCceEEEEEeccChhHHHHHHHhc------------------cCCeeeccCCC--------------------------
Q psy8497 190 PPMKQMLVVSATYSHDNLATLQKYM------------------VDPLLIRPEDA-------------------------- 225 (2355)
Q Consensus 190 ppnrQILLLSATLS~EILElLkKfL------------------rdPvIIrVese-------------------------- 225 (2355)
.... .++||+||.++....++.++ .+|+.-.....
T Consensus 1127 ~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 5444 46689988765443332211 00100000000
Q ss_pred --------ccccccceEEEE--------------------------------------------ecc-CCCCCcc-----
Q psy8497 226 --------TRPLLGVKQLVA--------------------------------------------LIP-ECKNPSL----- 247 (2355)
Q Consensus 226 --------e~~~seVrQvVv--------------------------------------------qVp-e~kn~sL----- 247 (2355)
..+...++.++. ++. .+.++.+
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 000000000000 000 0000000
Q ss_pred ---------------------hhhhHHHHHHHHHhcC----------------CCCeEEEEEcccccHHHHHHHHHhc--
Q psy8497 248 ---------------------RYVDEEKKLVQLLSQT----------------PFNQCVIFSNYQLRPEVICENLANA-- 288 (2355)
Q Consensus 248 ---------------------t~lsKkeaLLqLLerl----------------~kgRVLVFSQTRKmAEiLADyLrEr-- 288 (2355)
....++.+|.++|... ..+|+|||||-+.+++.+.+-|-+.
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 1123446666666433 2379999999999999999887664
Q ss_pred -CCccEEeeCCCCHHHHHHHHHHHhCC-CccEE-EEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEE
Q psy8497 289 -NFGAEYLSGAQDQKARLASLDSFKRG-KVRIL-VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365 (2355)
Q Consensus 289 -GIKVarLHGgMSqEERqeILErFRSG-EIdVL-VSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkV 365 (2355)
.+.+.+|+|.+++.+|+++.++|+++ .++|| ++|.++|.||||..+|+||+++-+|||..++|+|-||||+||+-.|
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 34566999999999999999999987 78875 5779999999999999999999999999999999999999988766
Q ss_pred EEEEcccCHHHHHHHHHhhccccc
Q psy8497 366 ITIVSAESLVKFHSLMGEINLDHA 389 (2355)
Q Consensus 366 IVLVSsdDVEeIEsLrReLKLKLa 389 (2355)
-+|..-......+++|.-.+.++.
T Consensus 1446 NVyRlItrGTLEEKVMgLQkFKmn 1469 (1549)
T KOG0392|consen 1446 NVYRLITRGTLEEKVMGLQKFKMN 1469 (1549)
T ss_pred eeeeehhcccHHHHHhhHHHHhhH
Confidence 555544444444455444444443
No 89
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.94 E-value=1.8e-25 Score=279.33 Aligned_cols=327 Identities=17% Similarity=0.180 Sum_probs=225.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHH-HHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAAL-NKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAIL-erL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
+|+ .|+++|..+...+..|+ |..++||+|||++++++++ ..+. +..++||+|+..||.|..+|+..+...+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 565 88999999988887776 9999999999999999985 4443 5579999999999999999999999888
Q ss_pred CCcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhh------cccCcCceEEEecccchhcc-cC----------
Q psy8497 118 KNLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLK------YLNMDSVRLFIMDEADKLIN-TG---------- 177 (2355)
Q Consensus 118 PgLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr------~LdLSkIdLLIVDEAHRLkN-~G---------- 177 (2355)
++++.+++|+..... ....++|+|+||..| .+++... .+.+..+.++||||+|+++- ..
T Consensus 125 -GLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 125 -GLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred -CCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 899999999865332 223389999999998 7877665 34578899999999998652 11
Q ss_pred -----hHHHHHHHHHhCCC--------CceEEEEEec--------------cCh-------hHHHHHHH-h-cc-C-Cee
Q psy8497 178 -----FVEDITWIYSQLPP--------MKQMLVVSAT--------------YSH-------DNLATLQK-Y-MV-D-PLL 219 (2355)
Q Consensus 178 -----F~SrLeeILs~Lpp--------nrQILLLSAT--------------LS~-------EILElLkK-f-Lr-d-PvI 219 (2355)
.+.....+...+.. ..+.+.||.. ... .+...+.. + +. + .++
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYi 283 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYI 283 (745)
T ss_pred CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 11112222222221 1122223220 000 00000000 0 00 0 000
Q ss_pred e------ccCC-Ccc--------------------------------------------------c----cccc----eE
Q psy8497 220 I------RPED-ATR--------------------------------------------------P----LLGV----KQ 234 (2355)
Q Consensus 220 I------rVes-ee~--------------------------------------------------~----~seV----rQ 234 (2355)
+ .+.. ... . ...+ ..
T Consensus 284 V~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 363 (745)
T TIGR00963 284 VRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL 363 (745)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC
Confidence 0 0000 000 0 0000 00
Q ss_pred EEEeccCCC---------CCcchhhhHHHHHHHHH--hcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 235 LVALIPECK---------NPSLRYVDEEKKLVQLL--SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 235 vVvqVpe~k---------n~sLt~lsKkeaLLqLL--erl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
-+..+|..+ ..+.....+..++...+ ....+.+|||||.++..++.|...|...|+.+..||+. +.+
T Consensus 364 ~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~ 441 (745)
T TIGR00963 364 EVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHE 441 (745)
T ss_pred CEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHH
Confidence 011122111 01111223334444433 22345699999999999999999999999999999998 789
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCCC-------ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAAN-------VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLPa-------VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
|...+..|..+...|+|||+++++|+||+. .-+||.++.|.|...|.|++||+||.|.+|.++.|++..+.-+
T Consensus 442 rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 442 REAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred HHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 999999999999999999999999999998 5599999999999999999999999999999999998766544
No 90
>KOG0391|consensus
Probab=99.94 E-value=1.9e-26 Score=286.05 Aligned_cols=120 Identities=15% Similarity=0.157 Sum_probs=105.8
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC--CccEEEEecccccccCCCCccEEEEecC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG--KVRILVTTDLAARGIDAANVDLVINLEI 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG--EIdVLVSTSALGEGLDLPaVDTVIIyDS 342 (2355)
++|||||++|.+|++.|..+|...|+-|.+|+|....++|+.++++|+.. .+++|++|+.++.||||..+|+||+||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 47999999999999999999999999999999999999999999999964 4788999999999999999999999999
Q ss_pred CCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 343 PHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 343 P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
+|||..+.|+.-|+||+|+.-.|.+|....+....+.|++..
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 999999999999999999766655555444444445555544
No 91
>KOG1123|consensus
Probab=99.94 E-value=9.8e-27 Score=274.40 Aligned_cols=321 Identities=16% Similarity=0.227 Sum_probs=249.6
Q ss_pred CCcHHHHHHHHHHHcC---CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNG---YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG---RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg 119 (2355)
.++|||+++|..++.+ ++.||+.|+|+|||++.+.+++.. .+.+||||.+...+.||...++.|.... +
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-------kK~clvLcts~VSVeQWkqQfk~wsti~-d 373 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ-D 373 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-------cccEEEEecCccCHHHHHHHHHhhcccC-c
Confidence 5699999999999975 569999999999999998777643 5679999999999999999999987655 5
Q ss_pred cEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh--------hcccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 120 LHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL--------KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 120 LrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr--------r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
-.+..++.+..... ...+.|+|+||.++...-.+ +++.-+.|++||+||+|.+....|...+..+..+.+
T Consensus 374 ~~i~rFTsd~Ke~~-~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcK- 451 (776)
T KOG1123|consen 374 DQICRFTSDAKERF-PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCK- 451 (776)
T ss_pred cceEEeeccccccC-CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhh-
Confidence 66777887766432 33478999999987532221 455678999999999999988877777776666665
Q ss_pred CceEEEEEeccChhHHHHHH-HhccCCeeeccC----CCccccccceEEEEeccCCCCCcchhh---hHHHH--------
Q psy8497 192 MKQMLVVSATYSHDNLATLQ-KYMVDPLLIRPE----DATRPLLGVKQLVALIPECKNPSLRYV---DEEKK-------- 255 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLk-KfLrdPvIIrVe----see~~~seVrQvVvqVpe~kn~sLt~l---sKkea-------- 255 (2355)
|+||||+-.+...+.. .||..|.++... ........++...+|++....-+..++ ..+..
T Consensus 452 ----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~ 527 (776)
T KOG1123|consen 452 ----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPN 527 (776)
T ss_pred ----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcc
Confidence 9999999877655443 566666665443 223445667888888886644333332 22222
Q ss_pred -------HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHh-CCCccEEEEeccccc
Q psy8497 256 -------LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFK-RGKVRILVTTDLAAR 327 (2355)
Q Consensus 256 -------LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFR-SGEIdVLVSTSALGE 327 (2355)
|.+..++ .+.++|||+.++-.+..++-.|.+ -+|+|.+++.||.+||+.|+ +..++.++.+.++..
T Consensus 528 KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDt 601 (776)
T KOG1123|consen 528 KFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDT 601 (776)
T ss_pred hhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCc
Confidence 2232233 457999999999888888877765 67999999999999999999 578899999999999
Q ss_pred ccCCCCccEEEEecCCC-CHhHHHHHhhccCCCC------CccEEEEEEcccCHHHHHHHHHh
Q psy8497 328 GIDAANVDLVINLEIPH-DAATYLHRMGRAGRYG------TRGLVITIVSAESLVKFHSLMGE 383 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiG------QkGkVIVLVSsdDVEeIEsLrRe 383 (2355)
.||||+++++|.+.+.. |..+-.||+||..|.- .....+.+++.++.+|+....+.
T Consensus 602 SiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ 664 (776)
T KOG1123|consen 602 SIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQ 664 (776)
T ss_pred cccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhh
Confidence 99999999999998887 8899999999999853 45678889999999998877553
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=3.7e-25 Score=269.77 Aligned_cols=297 Identities=20% Similarity=0.223 Sum_probs=203.6
Q ss_pred EEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------
Q psy8497 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-------- 133 (2355)
Q Consensus 62 ILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-------- 133 (2355)
+|.++||+|||++|+.++...+. .++++|||+|+.+|+.|+.+.+++.+ +..+.+++++.....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~----~g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~ 72 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA----LGKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKV 72 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHH
Confidence 57899999999999877665554 36789999999999999999998865 356778887653321
Q ss_pred CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-----hH-HHHHHHHHhCCCCceEEEEEeccChhHH
Q psy8497 134 PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-----FV-EDITWIYSQLPPMKQMLVVSATYSHDNL 207 (2355)
Q Consensus 134 qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-----F~-SrLeeILs~LppnrQILLLSATLS~EIL 207 (2355)
.....+|||+|+..+ +..+.++++|||||+|...-.+ |. ..+..+. ......++|++||||+.+..
T Consensus 73 ~~g~~~IVVGTrsal-------f~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r-a~~~~~~vil~SATPsles~ 144 (505)
T TIGR00595 73 KNGEILVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR-AKKFNCPVVLGSATPSLESY 144 (505)
T ss_pred HcCCCCEEECChHHH-------cCcccCCCEEEEECCCccccccccCCCCcHHHHHHHH-HHhcCCCEEEEeCCCCHHHH
Confidence 112478999999876 2457788999999999865322 11 2233333 33457889999999986654
Q ss_pred HHHHHhccCCe-eeccCCCc-cccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEccccc--------
Q psy8497 208 ATLQKYMVDPL-LIRPEDAT-RPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLR-------- 277 (2355)
Q Consensus 208 ElLkKfLrdPv-IIrVesee-~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKm-------- 277 (2355)
..+.. ... .+...... ........++. +................+.+.+... .++|||++++-.
T Consensus 145 ~~~~~---g~~~~~~l~~r~~~~~~p~v~vid-~~~~~~~~~ls~~l~~~i~~~l~~g--~qvLvflnrrGya~~~~C~~ 218 (505)
T TIGR00595 145 HNAKQ---KAYRLLVLTRRVSGRKPPEVKLID-MRKEPRQSFLSPELITAIEQTLAAG--EQSILFLNRRGYSKNLLCRS 218 (505)
T ss_pred HHHhc---CCeEEeechhhhcCCCCCeEEEEe-cccccccCCccHHHHHHHHHHHHcC--CcEEEEEeCCcCCCeeEhhh
Confidence 44321 111 11111110 01111111111 1111100111222334444555433 589999775532
Q ss_pred ----------------------------------------------------HHHHHHHHHhc--CCccEEeeCCCCHHH
Q psy8497 278 ----------------------------------------------------PEVICENLANA--NFGAEYLSGAQDQKA 303 (2355)
Q Consensus 278 ----------------------------------------------------AEiLADyLrEr--GIKVarLHGgMSqEE 303 (2355)
.+.+++.|.+. +.++.++|+++....
T Consensus 219 Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~ 298 (505)
T TIGR00595 219 CGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRK 298 (505)
T ss_pred CcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCc
Confidence 47888888876 678999999998766
Q ss_pred H--HHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC------------CHhHHHHHhhccCCCCCccEEEEEE
Q psy8497 304 R--LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH------------DAATYLHRMGRAGRYGTRGLVITIV 369 (2355)
Q Consensus 304 R--qeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~------------SPqSYIQRIGRAGRiGQkGkVIVLV 369 (2355)
+ ..+++.|++|+++|||+|++++.|+|+|.+++|++++.+. ..+.++|++|||||.++.|.|++..
T Consensus 299 ~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 299 GAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred cHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 5 8899999999999999999999999999999999888874 2468999999999999999999888
Q ss_pred cccCHHHHHHH
Q psy8497 370 SAESLVKFHSL 380 (2355)
Q Consensus 370 SsdDVEeIEsL 380 (2355)
...+...+..+
T Consensus 379 ~~p~~~~~~~~ 389 (505)
T TIGR00595 379 YNPNHPAIQAA 389 (505)
T ss_pred CCCCCHHHHHH
Confidence 66655544443
No 93
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=1.6e-24 Score=266.31 Aligned_cols=315 Identities=19% Similarity=0.230 Sum_probs=238.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
+.+.+..+.| +|+..|++++..|... .+=+|++..|||||++++++++..+. .+.++.+.+||..||.|
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~----~G~Q~ALMAPTEILA~Q 326 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE----AGYQAALMAPTEILAEQ 326 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH----cCCeeEEeccHHHHHHH
Confidence 5566677887 9999999999999864 24699999999999999999998776 48899999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
.++.+.+++..+ +++|..++|....... ....+|||+|.. +..+...+.++.++||||=||
T Consensus 327 H~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQHR----- 395 (677)
T COG1200 327 HYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQHR----- 395 (677)
T ss_pred HHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch-----hhhcceeecceeEEEEecccc-----
Confidence 999999999887 7999999998654321 223899999964 334555688899999999999
Q ss_pred hHHHHHHHHHhCCC-CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHH
Q psy8497 178 FVEDITWIYSQLPP-MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256 (2355)
Q Consensus 178 F~SrLeeILs~Lpp-nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaL 256 (2355)
|+..-...+..-.. .+.+|.|||||.+..+.+..- .+-.+..+........++.-........ ....+.+
T Consensus 396 FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~f--gDldvS~IdElP~GRkpI~T~~i~~~~~-------~~v~e~i 466 (677)
T COG1200 396 FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAF--GDLDVSIIDELPPGRKPITTVVIPHERR-------PEVYERI 466 (677)
T ss_pred ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHh--ccccchhhccCCCCCCceEEEEeccccH-------HHHHHHH
Confidence 44444555555555 688999999999876655432 2222222222222222333222222111 1122333
Q ss_pred HHHHhcCCCCeEEEEEcccccH--------HHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q psy8497 257 VQLLSQTPFNQCVIFSNYQLRP--------EVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA 326 (2355)
Q Consensus 257 LqLLerl~kgRVLVFSQTRKmA--------EiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG 326 (2355)
...+. .+.++.|.|+-++.. +.++..|... ++++..+||.|+..++.++++.|++|+++|||||.+++
T Consensus 467 ~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIE 544 (677)
T COG1200 467 REEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIE 544 (677)
T ss_pred HHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEE
Confidence 33333 346899999876654 4555666643 56799999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEcccC
Q psy8497 327 RGIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVSAES 373 (2355)
Q Consensus 327 EGLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVSsdD 373 (2355)
+|||+|+++++||.++.. -..++-|..||+||.+....|++++....
T Consensus 545 VGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 545 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred ecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999885 88999999999999888999999987655
No 94
>KOG0948|consensus
Probab=99.93 E-value=7.8e-26 Score=275.05 Aligned_cols=313 Identities=17% Similarity=0.193 Sum_probs=240.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
+|-|+|..+|.-+-++.+++|.|.|.+|||+++..+|...|.. +.+|||..|.++|.+|.++.+..-+. .|
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~----kQRVIYTSPIKALSNQKYREl~~EF~-----DV 199 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE----KQRVIYTSPIKALSNQKYRELLEEFK-----DV 199 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh----cCeEEeeChhhhhcchhHHHHHHHhc-----cc
Confidence 7899999999999999999999999999999999999998884 77899999999999999988876543 46
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEecc
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATL 202 (2355)
.+.+|+...... +..+|+|.|.|..++.++.--+..+.|||+||+|.|.+...+..|++.+-.+|...+.++||||+
T Consensus 200 GLMTGDVTInP~---ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 200 GLMTGDVTINPD---ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred ceeecceeeCCC---CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccC
Confidence 788998876543 67999999999999999888889999999999999999888899999999999999999999999
Q ss_pred ChhHHHHHHHh---ccCCeeeccCCCccccccceEE---------EEeccCCCCCcch----------------------
Q psy8497 203 SHDNLATLQKY---MVDPLLIRPEDATRPLLGVKQL---------VALIPECKNPSLR---------------------- 248 (2355)
Q Consensus 203 S~EILElLkKf---LrdPvIIrVesee~~~seVrQv---------VvqVpe~kn~sLt---------------------- 248 (2355)
++.. ++..+. ...|.-+....-.+ -+++++ +..+++. ..+..
T Consensus 277 PNA~-qFAeWI~~ihkQPcHVVYTdyRP--TPLQHyifP~ggdGlylvVDek-~~FrednF~~am~~l~~~~~~~~~~~~ 352 (1041)
T KOG0948|consen 277 PNAR-QFAEWICHIHKQPCHVVYTDYRP--TPLQHYIFPAGGDGLYLVVDEK-GKFREDNFQKAMSVLRKAGESDGKKKA 352 (1041)
T ss_pred CCHH-HHHHHHHHHhcCCceEEeecCCC--CcceeeeecCCCCeeEEEEecc-cccchHHHHHHHHHhhccCCCcccccc
Confidence 8543 333322 23333332222111 111111 1111111 00000
Q ss_pred --------------hhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC-------------------------
Q psy8497 249 --------------YVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN------------------------- 289 (2355)
Q Consensus 249 --------------~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG------------------------- 289 (2355)
.....-.++..+......+||||+-+++.|+.++-.|.+..
T Consensus 353 ~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeD 432 (1041)
T KOG0948|consen 353 NKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEED 432 (1041)
T ss_pred ccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhh
Confidence 00112345555555566799999999999999998887532
Q ss_pred --------------CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC--------CHh
Q psy8497 290 --------------FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH--------DAA 347 (2355)
Q Consensus 290 --------------IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~--------SPq 347 (2355)
-++.++|+++-+--++.+.=.|.+|-++||+||.+...|||.|+-++|+..---| +.-
T Consensus 433 r~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissG 512 (1041)
T KOG0948|consen 433 RELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSG 512 (1041)
T ss_pred ccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeeccc
Confidence 3578899999999999999999999999999999999999999877776322222 677
Q ss_pred HHHHHhhccCCCCC--ccEEEEEEcc
Q psy8497 348 TYLHRMGRAGRYGT--RGLVITIVSA 371 (2355)
Q Consensus 348 SYIQRIGRAGRiGQ--kGkVIVLVSs 371 (2355)
+|+||.|||||.|. .|.||++++.
T Consensus 513 EYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 513 EYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred ceEEecccccccCCCCCceEEEEecC
Confidence 99999999999995 4666666654
No 95
>KOG0352|consensus
Probab=99.93 E-value=1.5e-25 Score=261.45 Aligned_cols=337 Identities=20% Similarity=0.238 Sum_probs=239.8
Q ss_pred HHHHHHH-CCCCCC-cHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKE-SPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITD 108 (2355)
Q Consensus 32 LLK~Lqa-~GF~eL-RPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~an 108 (2355)
+...|++ +|+..+ ++.|++++..+..+ .+|.|++|||+||++||.+++|.. ++-+||+.|+.+|+..+.+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------~gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------GGITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------CCeEEEehHHHHHHHHHHH
Confidence 5556655 576644 78999999998875 689999999999999999998743 4578999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCcc-----ccCCCCCCcEEEECHHHHHHHHHh----hcccCcCceEEEecccchhcccC--
Q psy8497 109 VVRSVGAHVKNLHVDYFIGGTQ-----VERPKRPVQIVVGSPGRIKQMIKL----KYLNMDSVRLFIMDEADKLINTG-- 177 (2355)
Q Consensus 109 wLREFgk~APgLrVVvytGGkq-----~rkqirq~DILVTTPErLLDLLdr----r~LdLSkIdLLIVDEAHRLkN~G-- 177 (2355)
-+..+.-....++..+.+-... .........|++.|||+...-... ....-..+.+|||||||.+..|+
T Consensus 80 HL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHD 159 (641)
T KOG0352|consen 80 HLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHD 159 (641)
T ss_pred HHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccc
Confidence 9988854443333322221110 011222367999999975322222 12223456799999999999887
Q ss_pred hHHHHH---HHHHhCCCCceEEEEEeccChhHHHHHHHh--ccCCeeeccCCCccccc-cceEEEEeccCCCCCcchhhh
Q psy8497 178 FVEDIT---WIYSQLPPMKQMLVVSATYSHDNLATLQKY--MVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVD 251 (2355)
Q Consensus 178 F~SrLe---eILs~LppnrQILLLSATLS~EILElLkKf--LrdPvIIrVesee~~~s-eVrQvVvqVpe~kn~sLt~ls 251 (2355)
|...+. .+...+ +....|.||||....+.+.+..- |.+|+.+.....-.... --.++...+.++ +..
T Consensus 160 FRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~------~~~ 232 (641)
T KOG0352|consen 160 FRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDC------LTV 232 (641)
T ss_pred cCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhH------hHh
Confidence 433333 333334 46778999999998888766543 45555443222110000 000000011111 000
Q ss_pred HHHHHHHHHh------cCC---CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe
Q psy8497 252 EEKKLVQLLS------QTP---FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322 (2355)
Q Consensus 252 KkeaLLqLLe------rl~---kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST 322 (2355)
....-...|. ..+ .+--||||.|+..++.|+-.|..+|+.+..+|.++...||.++.+.|.++++.||++|
T Consensus 233 LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT 312 (641)
T KOG0352|consen 233 LADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAAT 312 (641)
T ss_pred HHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEE
Confidence 1111111111 111 1357999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 323 DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 323 SALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
...++|+|-|+|++||+.+.+.|...|.|-.|||||.|....+.+|++..+...+.-+++
T Consensus 313 ~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 313 VSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred eccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988877665543
No 96
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.4e-24 Score=276.70 Aligned_cols=325 Identities=18% Similarity=0.224 Sum_probs=241.4
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 34 K~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
.....++| .|-++|++++..|.++.+|+|++|||+|||+++..++...+.. +.+++|+.|.++|..|.+..+...
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~----~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD----GQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc----CCceEeccchhhhhhhHHHHHHHH
Confidence 34445777 8999999999999999999999999999999999999888774 666999999999999999988876
Q ss_pred hcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCc
Q psy8497 114 GAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193 (2355)
Q Consensus 114 gk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppnr 193 (2355)
+... .-.+.+++|+...... +.|+|+|.|.|.+++.+....+..+.+||+||+|.+.+...+..++.++-.+|...
T Consensus 186 fgdv-~~~vGL~TGDv~IN~~---A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 186 FGDV-ADMVGLMTGDVSINPD---APCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHV 261 (1041)
T ss_pred hhhh-hhhccceecceeeCCC---CceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCC
Confidence 5433 2346889998876543 77999999999999999888899999999999999999989999999999999999
Q ss_pred eEEEEEeccChhHHHH--HHHhccCCeeeccCCCccccccceE-------EEEeccCCCC---Cc-------c-------
Q psy8497 194 QMLVVSATYSHDNLAT--LQKYMVDPLLIRPEDATRPLLGVKQ-------LVALIPECKN---PS-------L------- 247 (2355)
Q Consensus 194 QILLLSATLS~EILEl--LkKfLrdPvIIrVesee~~~seVrQ-------vVvqVpe~kn---~s-------L------- 247 (2355)
++|+||||.++...-. +...-..+..+....... .++.+ ++..++.... .. +
T Consensus 262 ~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rp--vPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~ 339 (1041)
T COG4581 262 RFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRP--VPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKV 339 (1041)
T ss_pred cEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCC--CCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhc
Confidence 9999999998543322 221112232222221111 11111 1111111110 00 0
Q ss_pred ----------------------hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc-----------------
Q psy8497 248 ----------------------RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA----------------- 288 (2355)
Q Consensus 248 ----------------------t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr----------------- 288 (2355)
........++..+.....-.+|+|+-+++.|+.++..|...
T Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~ 419 (1041)
T COG4581 340 RETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIID 419 (1041)
T ss_pred cccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 00000022444444445568999999999998887777621
Q ss_pred -----------CC-------------ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----e
Q psy8497 289 -----------NF-------------GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----L 340 (2355)
Q Consensus 289 -----------GI-------------KVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----y 340 (2355)
++ .++++|++|-+..+..+...|..|-++||++|.+++.|||+|+-++|+- +
T Consensus 420 ~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~ 499 (1041)
T COG4581 420 HAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKF 499 (1041)
T ss_pred HHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEe
Confidence 11 3568999999999999999999999999999999999999998777761 2
Q ss_pred c----CCCCHhHHHHHhhccCCCCCc--cEEEEEE
Q psy8497 341 E----IPHDAATYLHRMGRAGRYGTR--GLVITIV 369 (2355)
Q Consensus 341 D----SP~SPqSYIQRIGRAGRiGQk--GkVIVLV 369 (2355)
| ...++.+|+|+.|||||.|.+ |.||++.
T Consensus 500 dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~ 534 (1041)
T COG4581 500 DGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIE 534 (1041)
T ss_pred cCCceeecChhHHHHhhhhhccccccccceEEEec
Confidence 2 123799999999999999955 5555553
No 97
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.93 E-value=2.8e-24 Score=279.82 Aligned_cols=308 Identities=18% Similarity=0.212 Sum_probs=203.1
Q ss_pred cHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH----HHHHHHHHHHHHHhcccCCc
Q psy8497 45 SPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR----EIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 45 RPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR----ALAqQ~anwLREFgk~APgL 120 (2355)
..+..+.+..+..++-+||+++||||||.+ +..++..+. ....+.+++.-|.+ +|+.|+.+.+..-. +-
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq-lPq~lle~g--~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l----G~ 148 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ-LPKICLELG--RGVKGLIGHTQPRRLAARTVANRIAEELETEL----GG 148 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHcC--CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh----cc
Confidence 444455667766677788999999999963 322332221 12223455556855 56666666655422 11
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc-hhcccChHHH-HHHHHHhCCCCceEEEE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD-KLINTGFVED-ITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH-RLkN~GF~Sr-LeeILs~LppnrQILLL 198 (2355)
.|.+-+.-. .......+|+|+|+++|+..+....+ +..+++||||||| ++++.+|.-. +..++.. .+..|+|+|
T Consensus 149 ~VGY~vrf~--~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvILm 224 (1294)
T PRK11131 149 CVGYKVRFN--DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVIIT 224 (1294)
T ss_pred eeceeecCc--cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEEEe
Confidence 222211111 11123478999999999988876544 8999999999999 6788776542 3333322 246899999
Q ss_pred EeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHH---HhcCCCCeEEEEEccc
Q psy8497 199 SATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL---LSQTPFNQCVIFSNYQ 275 (2355)
Q Consensus 199 SATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqL---Lerl~kgRVLVFSQTR 275 (2355)
|||+... .+...+...+ ++.+..... .+...+..+.... ..........++.. +.....+.+|||+++.
T Consensus 225 SATid~e--~fs~~F~~ap-vI~V~Gr~~---pVei~y~p~~~~~--~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~ 296 (1294)
T PRK11131 225 SATIDPE--RFSRHFNNAP-IIEVSGRTY---PVEVRYRPIVEEA--DDTERDQLQAIFDAVDELGREGPGDILIFMSGE 296 (1294)
T ss_pred eCCCCHH--HHHHHcCCCC-EEEEcCccc---cceEEEeeccccc--chhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCH
Confidence 9999743 3333333334 344443222 2333333322110 00001112222222 2234457899999999
Q ss_pred ccHHHHHHHHHhcCCc---cEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEec-----------
Q psy8497 276 LRPEVICENLANANFG---AEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLE----------- 341 (2355)
Q Consensus 276 KmAEiLADyLrErGIK---VarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyD----------- 341 (2355)
..++.+++.|...++. +..+||+|++.+|..+++. .|..+|||||++++.|||||++++||.++
T Consensus 297 ~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~ 374 (1294)
T PRK11131 297 REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRT 374 (1294)
T ss_pred HHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccccc
Confidence 9999999999987764 6789999999999999876 47789999999999999999999999875
Q ss_pred ----CC---CCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 342 ----IP---HDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 342 ----SP---~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.| .|..+++||+|||||. .+|.||.+++..+.
T Consensus 375 ~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 375 KVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred CcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 23 3568999999999997 78999999986543
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=4.2e-24 Score=272.76 Aligned_cols=321 Identities=20% Similarity=0.215 Sum_probs=253.4
Q ss_pred CcccCCcHHHHHHHH-HCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEE
Q psy8497 23 ENDVLIEKPIRQGLQ-ENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTII 95 (2355)
Q Consensus 23 SFEeLlLkpLLK~Lq-a~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLI 95 (2355)
.|..-...++...+. .++| .-++-|..||..+.+. .+=+||+..|.|||.+++=+++..+. .+++|.|
T Consensus 574 G~af~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~----~GKQVAv 648 (1139)
T COG1197 574 GFAFPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM----DGKQVAV 648 (1139)
T ss_pred CCCCCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc----CCCeEEE
Confidence 333333444444444 3666 8899999999998852 36799999999999999999988876 4799999
Q ss_pred EcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEe
Q psy8497 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIM 167 (2355)
Q Consensus 96 LVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIV 167 (2355)
||||.-|++|.++.|++-+..+ +++|.++.--..... ....++|||+|.--| ...+.+.++++|||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlII 722 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLII 722 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEE
Confidence 9999999999999999987777 788877765443322 123389999996433 34556888999999
Q ss_pred cccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 168 DEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
||-|+ |+..-.+-++.+....-+|-|||||.+..+.+...-+++--+|..+.... ..++-++......
T Consensus 723 DEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R--~pV~T~V~~~d~~----- 790 (1139)
T COG1197 723 DEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR--LPVKTFVSEYDDL----- 790 (1139)
T ss_pred echhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC--cceEEEEecCChH-----
Confidence 99998 55666777888888999999999999998888777666655555443322 2233333222211
Q ss_pred hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc
Q psy8497 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325 (2355)
Q Consensus 248 t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL 325 (2355)
...++++.-+.+ +++|-...+.++.++.++..|++. ..++.+.||.|+..+-..++..|.+|+++|||||.++
T Consensus 791 ---~ireAI~REl~R--gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTII 865 (1139)
T COG1197 791 ---LIREAILRELLR--GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTII 865 (1139)
T ss_pred ---HHHHHHHHHHhc--CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeee
Confidence 233445554443 479999999999999999999986 4578999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 326 ARGIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+.|||||+++|+|+-+++. -..++-|..||+||..+.+.+++++..
T Consensus 866 EtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 866 ETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred ecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 9999999999999999986 889999999999999999999999863
No 99
>KOG0353|consensus
Probab=99.92 E-value=2.9e-24 Score=247.45 Aligned_cols=323 Identities=19% Similarity=0.232 Sum_probs=245.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+-+..++|.|.++|+..+.+.+++|..|||.||++||.+|+|-. .+.+|||||+..|+..+.-.++.++..+
T Consensus 90 f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-------dg~alvi~plislmedqil~lkqlgi~a- 161 (695)
T KOG0353|consen 90 FHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-------DGFALVICPLISLMEDQILQLKQLGIDA- 161 (695)
T ss_pred hhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-------CCceEeechhHHHHHHHHHHHHHhCcch-
Confidence 56678999999999999999999999999999999999998743 6779999999999998888888885433
Q ss_pred CcEEEEEECCcccc----------CCCCCCcEEEECHHHHHHHH---H--hhcccCcCceEEEecccchhcccCh--HH-
Q psy8497 119 NLHVDYFIGGTQVE----------RPKRPVQIVVGSPGRIKQMI---K--LKYLNMDSVRLFIMDEADKLINTGF--VE- 180 (2355)
Q Consensus 119 gLrVVvytGGkq~r----------kqirq~DILVTTPErLLDLL---d--rr~LdLSkIdLLIVDEAHRLkN~GF--~S- 180 (2355)
..+......+ .....+.+|+.|||.+.... . ...+....+.+|.|||+|....|+. ..
T Consensus 162 ----s~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~d 237 (695)
T KOG0353|consen 162 ----SMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPD 237 (695)
T ss_pred ----hhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcc
Confidence 3333322211 11223789999999875321 1 1345567788999999999998873 22
Q ss_pred -HHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHH
Q psy8497 181 -DITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL 259 (2355)
Q Consensus 181 -rLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqL 259 (2355)
....++...-+...+|+||||....++......+.-...+... .......+...+.+-|... ..-.+.+..+
T Consensus 238 y~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a~fnr~nl~yev~qkp~n~------dd~~edi~k~ 310 (695)
T KOG0353|consen 238 YKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-AGFNRPNLKYEVRQKPGNE------DDCIEDIAKL 310 (695)
T ss_pred hHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheee-cccCCCCceeEeeeCCCCh------HHHHHHHHHH
Confidence 2334555555688999999999988887777655422111111 1122233444444433331 1233445555
Q ss_pred HhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEE
Q psy8497 260 LSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI 338 (2355)
Q Consensus 260 Lerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVI 338 (2355)
+... .+..-||||.+++.++.++..|+..|+.+..+|..|.+++|.-+-+.|..|++.|+|+|-+.++|||-|+|++||
T Consensus 311 i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvi 390 (695)
T KOG0353|consen 311 IKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVI 390 (695)
T ss_pred hccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEE
Confidence 5433 345789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHhHHHH-------------------------------------------HhhccCCCCCccEEEEEEcccCHH
Q psy8497 339 NLEIPHDAATYLH-------------------------------------------RMGRAGRYGTRGLVITIVSAESLV 375 (2355)
Q Consensus 339 IyDSP~SPqSYIQ-------------------------------------------RIGRAGRiGQkGkVIVLVSsdDVE 375 (2355)
+..+|.+...|.| -.|||||.+.+..+|+|+.-.+..
T Consensus 391 hhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 391 HHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred ecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHH
Confidence 9999999999999 679999999999999999776665
Q ss_pred HHHHH
Q psy8497 376 KFHSL 380 (2355)
Q Consensus 376 eIEsL 380 (2355)
.+..+
T Consensus 471 k~ssm 475 (695)
T KOG0353|consen 471 KISSM 475 (695)
T ss_pred hHHHH
Confidence 55544
No 100
>KOG0349|consensus
Probab=99.92 E-value=2.9e-25 Score=258.75 Aligned_cols=285 Identities=27% Similarity=0.419 Sum_probs=224.2
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccc--CCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEE
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHV--KNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLF 165 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~A--PgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLL 165 (2355)
.+|||-|.++|++|..+.+++|.... |.++..++.|+...+. .....+|+|+||.+|.+.+....+.+..+.++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 56999999999999999999886554 5566667777765543 23448999999999999999988899999999
Q ss_pred EecccchhcccChHHHHHHHHHhCCC------CceEEEEEeccCh-hHHHHHHHhccCCeeeccCCCccccccceEEEEe
Q psy8497 166 IMDEADKLINTGFVEDITWIYSQLPP------MKQMLVVSATYSH-DNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL 238 (2355)
Q Consensus 166 IVDEAHRLkN~GF~SrLeeILs~Lpp------nrQILLLSATLS~-EILElLkKfLrdPvIIrVesee~~~seVrQvVvq 238 (2355)
|+||++.|+..++...+..+...++. ..|+++.|||+.. ++.....+.|.-|..+....+......+..++..
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~l 447 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKL 447 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceee
Confidence 99999999998888888888877764 3589999999874 3334555677777777776666555555555544
Q ss_pred ccCCCCCcchhh----------------------hHH---------HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHh
Q psy8497 239 IPECKNPSLRYV----------------------DEE---------KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN 287 (2355)
Q Consensus 239 Vpe~kn~sLt~l----------------------sKk---------eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrE 287 (2355)
+....+...... ... +.-+..+......++||||.++..|+.|..+|.+
T Consensus 448 v~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~q 527 (725)
T KOG0349|consen 448 VCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQ 527 (725)
T ss_pred cCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHH
Confidence 432221111110 000 1122223344457999999999999999999998
Q ss_pred cC---CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccE
Q psy8497 288 AN---FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364 (2355)
Q Consensus 288 rG---IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGk 364 (2355)
+| +.+..+||+..+.||.+-|+.|+.+++++||||+++++||||..+..||++.+|-...+|++||||+||..+-|.
T Consensus 528 kgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermgl 607 (725)
T KOG0349|consen 528 KGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGL 607 (725)
T ss_pred cCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcce
Confidence 75 689999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEEcccCHHH
Q psy8497 365 VITIVSAESLVK 376 (2355)
Q Consensus 365 VIVLVSsdDVEe 376 (2355)
+|.++.......
T Consensus 608 aislvat~~ekv 619 (725)
T KOG0349|consen 608 AISLVATVPEKV 619 (725)
T ss_pred eEEEeeccchhe
Confidence 998886544433
No 101
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=1.8e-23 Score=267.08 Aligned_cols=311 Identities=16% Similarity=0.183 Sum_probs=200.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc-CCc
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNL 120 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A-PgL 120 (2355)
..|+|+|..+.........+||.+|||+|||.++++++...+.. ....+++|+.||++++.|+++.+.++.... +..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~--~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ--GLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47999999886554445568999999999999988776654432 335689999999999999999988754322 234
Q ss_pred EEEEEECCccccC----------------------------CCC---CCcEEEECHHHHHHHHH-hhcccCcCc----eE
Q psy8497 121 HVDYFIGGTQVER----------------------------PKR---PVQIVVGSPGRIKQMIK-LKYLNMDSV----RL 164 (2355)
Q Consensus 121 rVVvytGGkq~rk----------------------------qir---q~DILVTTPErLLDLLd-rr~LdLSkI----dL 164 (2355)
.+.+.+|...... ..+ ..+|+|||.+.++.... .+...++.+ .+
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 5666666542110 001 16899999998763332 211112222 38
Q ss_pred EEecccchhcccChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccc------cceE---
Q psy8497 165 FIMDEADKLINTGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLL------GVKQ--- 234 (2355)
Q Consensus 165 LIVDEAHRLkN~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~s------eVrQ--- 234 (2355)
|||||+|.+- ......+..++..+ .....+|+||||++....+.+...+.....+... ...+.. ....
T Consensus 443 vIiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~-~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 443 LIVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELS-SAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred EEEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccc-cccccccccccccceeeec
Confidence 9999999763 33344555555543 2356799999999977765554322211000000 000000 0000
Q ss_pred ----------EEEeccCCC-CCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC---CccEEeeCCCC
Q psy8497 235 ----------LVALIPECK-NPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN---FGAEYLSGAQD 300 (2355)
Q Consensus 235 ----------vVvqVpe~k-n~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG---IKVarLHGgMS 300 (2355)
..+.+.... ............+...+. ..+++||||++++.++.+++.|.+.+ ..+..+||.+.
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~--~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN--AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 000000000 000000111222333222 34689999999999999999999765 67999999999
Q ss_pred HHHH----HHHHHHH-hCCC---ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCC
Q psy8497 301 QKAR----LASLDSF-KRGK---VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361 (2355)
Q Consensus 301 qEER----qeILErF-RSGE---IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQ 361 (2355)
..+| .++++.| +++. ..|||+|++++.|||| ++++||....| ...++||+||++|.+.
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999 4577888 5555 4799999999999999 58999987777 7899999999999764
No 102
>KOG0390|consensus
Probab=99.92 E-value=7e-24 Score=265.10 Aligned_cols=329 Identities=17% Similarity=0.214 Sum_probs=219.9
Q ss_pred CCcHHHHHHHHHHHcC----------CcEEEEccCCchHHHHHHHHHHHHHHhcCC---CCCeEEEEcccHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLNG----------YDAIVQSKSGTGKSIVFVVAALNKLIKLPV---QQPQTIILAPTREIAVQITDV 109 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG----------RNVILAAPTGSGKTLVALIAILerL~ekr~---qggRVLILVPTRALAqQ~anw 109 (2355)
.|+|+|.+++.+|... ..||++..||+|||+..+..+..+|...+. ...+.|||+|...| .+|
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv----~nW 313 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLV----NNW 313 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHH----HHH
Confidence 7899999999999752 249999999999999888777777765332 11678999998655 555
Q ss_pred HHHHhcccC--CcEEEEEECCccccCC-----------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc
Q psy8497 110 VRSVGAHVK--NLHVDYFIGGTQVERP-----------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 110 LREFgk~AP--gLrVVvytGGkq~rkq-----------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~ 176 (2355)
-++|..|.. .+....+++....... .-..-|++.+|+.+..... .+....+++||+||+|++.+.
T Consensus 314 kkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 314 KKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch
Confidence 555555543 4666667776653111 1115699999999865553 344678899999999999987
Q ss_pred ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhcc--CC-------------------------------------
Q psy8497 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV--DP------------------------------------- 217 (2355)
Q Consensus 177 GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLr--dP------------------------------------- 217 (2355)
. ..+...+..+. ..+.|+||+||-++.+..+...+. .|
T Consensus 392 ~--s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~ 468 (776)
T KOG0390|consen 392 D--SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQ 468 (776)
T ss_pred h--hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHH
Confidence 6 77777787775 445577899988765543332220 00
Q ss_pred --------eeeccCC--CccccccceEEEEeccC----------------------------------CCCCc-------
Q psy8497 218 --------LLIRPED--ATRPLLGVKQLVALIPE----------------------------------CKNPS------- 246 (2355)
Q Consensus 218 --------vIIrVes--ee~~~seVrQvVvqVpe----------------------------------~kn~s------- 246 (2355)
++++... .....+.....++.+.. +..+.
T Consensus 469 eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~ 548 (776)
T KOG0390|consen 469 ELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEK 548 (776)
T ss_pred HHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccc
Confidence 1111110 00000111111111000 00000
Q ss_pred -------------------------chhhhHHHHHHHHHhcC---CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCC
Q psy8497 247 -------------------------LRYVDEEKKLVQLLSQT---PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGA 298 (2355)
Q Consensus 247 -------------------------Lt~lsKkeaLLqLLerl---~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGg 298 (2355)
.....++..|..++... ...++.+.++.+..++.+...+..+|+.+.+|||.
T Consensus 549 ~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~ 628 (776)
T KOG0390|consen 549 TEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGK 628 (776)
T ss_pred ccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCC
Confidence 00012223344443222 22345555566667777777777889999999999
Q ss_pred CCHHHHHHHHHHHhCCC---ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHH
Q psy8497 299 QDQKARLASLDSFKRGK---VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV 375 (2355)
Q Consensus 299 MSqEERqeILErFRSGE---IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVE 375 (2355)
|+..+|+.+++.|++.. +-+|++|.|+++||||-.++-||+||++|||....|+|+||.|.||+..|++|....+..
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 99999999999999743 447889999999999999999999999999999999999999999998888877554444
Q ss_pred HHHHH
Q psy8497 376 KFHSL 380 (2355)
Q Consensus 376 eIEsL 380 (2355)
..+.+
T Consensus 709 iEEk~ 713 (776)
T KOG0390|consen 709 IEEKI 713 (776)
T ss_pred chHHH
Confidence 44444
No 103
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.92 E-value=7.8e-24 Score=224.64 Aligned_cols=196 Identities=38% Similarity=0.639 Sum_probs=171.4
Q ss_pred cccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-CCCCeEEEEcccHH
Q psy8497 24 NDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-VQQPQTIILAPTRE 101 (2355)
Q Consensus 24 FEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-~qggRVLILVPTRA 101 (2355)
|.++.+++ +.+.+...|+..|+++|.++++.+.+++++|+++|||+|||++++++++..+.... ..++++|||+|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 66778887 99999999999999999999999999999999999999999999999998887532 35678999999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 102 IAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 102 LAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
|+.|+...++.+.... ++.+..+.|+..... ....++|+|+||+.|..++......+..+++|||||+|.+.+.+
T Consensus 81 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 81 LALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccC
Confidence 9999999999987664 788888888765432 11357899999999999888777778899999999999998888
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeee
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLI 220 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvII 220 (2355)
+...+..++..++...|++++|||++......+..++.+++.+
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8899999999998899999999999988888888888877765
No 104
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=4.1e-23 Score=269.36 Aligned_cols=312 Identities=17% Similarity=0.201 Sum_probs=198.9
Q ss_pred CCCcHHHHHHHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 42 VKESPIQMAAFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
..|++||.+|+..+.. .+.+||+++||+|||++++..+. .|.. .....+||||||+.+|+.|+.+.|..+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~-~L~~-~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMY-RLLK-AKRFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHH-HHHh-cCccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 3699999999988763 35799999999999988664444 4442 134568999999999999999999887422
Q ss_pred cCCcEEEEEECCc--cccCCCCCCcEEEECHHHHHHHHHh-----hcccCcCceEEEecccchhccc-------------
Q psy8497 117 VKNLHVDYFIGGT--QVERPKRPVQIVVGSPGRIKQMIKL-----KYLNMDSVRLFIMDEADKLINT------------- 176 (2355)
Q Consensus 117 APgLrVVvytGGk--q~rkqirq~DILVTTPErLLDLLdr-----r~LdLSkIdLLIVDEAHRLkN~------------- 176 (2355)
. ...+..+++.. ..........|+|+|+++|...+.. ..+.+..+++|||||||+....
T Consensus 490 ~-~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 490 G-DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred c-ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccch
Confidence 1 11111111111 0011122368999999998766432 1235678899999999995310
Q ss_pred --ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh--------------cc---CCeeeccCC--Ccccccc---c
Q psy8497 177 --GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY--------------MV---DPLLIRPED--ATRPLLG---V 232 (2355)
Q Consensus 177 --GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf--------------Lr---dPvIIrVes--ee~~~se---V 232 (2355)
.++..+..++..+. ..+|+|||||.......+... +. .|+.+.... ....... +
T Consensus 569 ~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 569 QLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 12466777777553 467999999975443322211 11 011111000 0000000 0
Q ss_pred eEEE---Eecc-CCCCCcchhh---------------hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc-----
Q psy8497 233 KQLV---ALIP-ECKNPSLRYV---------------DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA----- 288 (2355)
Q Consensus 233 rQvV---vqVp-e~kn~sLt~l---------------sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr----- 288 (2355)
..+. ..+. ........+. .....|...+.....+++||||.++..++.+.+.|.+.
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 0000 0000 0000000000 00122333333333479999999999999999888763
Q ss_pred -CC---ccEEeeCCCCHHHHHHHHHHHhCCCc-cEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCC
Q psy8497 289 -NF---GAEYLSGAQDQKARLASLDSFKRGKV-RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360 (2355)
Q Consensus 289 -GI---KVarLHGgMSqEERqeILErFRSGEI-dVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG 360 (2355)
++ .+..++|.++ ++..+++.|+++.. .|||+++++.+|+|+|.+.+||++.++.|...|+||+||+.|.-
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 22 3556888875 56789999999887 68999999999999999999999999999999999999999964
No 105
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.91 E-value=4.2e-23 Score=269.59 Aligned_cols=309 Identities=16% Similarity=0.170 Sum_probs=206.7
Q ss_pred HHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECC
Q psy8497 49 MAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG 128 (2355)
Q Consensus 49 eEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGG 128 (2355)
.+.+..|..+.-+||+++||+|||.+ +..++... .....+.+++.-|.+..+..+...+.+......+-.|++-+..
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq-lPq~lle~--~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~ 149 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ-LPKICLEL--GRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF 149 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH-HHHHHHHc--CCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC
Confidence 45666666667789999999999964 32332221 1123346777779998888888777765433223333322221
Q ss_pred ccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc-hhcccChHHH-HHHHHHhCCCCceEEEEEeccChhH
Q psy8497 129 TQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD-KLINTGFVED-ITWIYSQLPPMKQMLVVSATYSHDN 206 (2355)
Q Consensus 129 kq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH-RLkN~GF~Sr-LeeILs~LppnrQILLLSATLS~EI 206 (2355)
.. .......|+|+|+++|+..+.... .+..+++|||||+| +.++.++.-. +..++.. .+..|+|+||||+...
T Consensus 150 ~~--~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmSATld~~- 224 (1283)
T TIGR01967 150 HD--QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATIDPE- 224 (1283)
T ss_pred Cc--ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEeCCcCHH-
Confidence 11 122347899999999998887654 37899999999999 6888776543 4445443 3578999999999742
Q ss_pred HHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCC-cchhhhH-HHHHHHHHhcCCCCeEEEEEcccccHHHHHHH
Q psy8497 207 LATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP-SLRYVDE-EKKLVQLLSQTPFNQCVIFSNYQLRPEVICEN 284 (2355)
Q Consensus 207 LElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~-sLt~lsK-keaLLqLLerl~kgRVLVFSQTRKmAEiLADy 284 (2355)
. +..++....++.+..... .+...+..+...... ....... ...+..++. ...+.+|||+++...++.+++.
T Consensus 225 -~-fa~~F~~apvI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~ 298 (1283)
T TIGR01967 225 -R-FSRHFNNAPIIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEI 298 (1283)
T ss_pred -H-HHHHhcCCCEEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHH
Confidence 3 333443332344433222 223333222111000 0011111 122333332 2447999999999999999999
Q ss_pred HHhcC---CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCC------------------
Q psy8497 285 LANAN---FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP------------------ 343 (2355)
Q Consensus 285 LrErG---IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP------------------ 343 (2355)
|...+ +.+..|||.|+..+|.++++.+ +..+|||||++++.||+||++++||.++.+
T Consensus 299 L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ 376 (1283)
T TIGR01967 299 LRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEP 376 (1283)
T ss_pred HHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCcc
Confidence 99864 4588899999999999986654 346899999999999999999999988743
Q ss_pred CCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 344 HDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 344 ~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.|..+++||+|||||.+ +|.||.+++..+.
T Consensus 377 ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 377 ISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred CCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36679999999999986 9999999976544
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=7e-22 Score=250.31 Aligned_cols=328 Identities=17% Similarity=0.192 Sum_probs=224.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+--.|.+|+ |..++||+|||++++++++..+.. +..++||+|++.||.|..+|+..+..++
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~----G~~V~VvTpn~yLA~qd~e~m~~l~~~l- 150 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS----GRGVHIVTVNDYLAKRDSQWMKPIYEFL- 150 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc----CCCEEEEcCCHHHHHHHHHHHHHHhccc-
Confidence 565 78888988877776665 999999999999999999866552 4569999999999999999999999888
Q ss_pred CcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhhc-ccC-----cCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLKY-LNM-----DSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr~-LdL-----SkIdLLIVDEAHRLk-N~------------ 176 (2355)
++.+.+++|+..... ....++|+|+||..| .+++.... +.+ ..+.++||||||.++ +.
T Consensus 151 GLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~ 230 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAE 230 (896)
T ss_pred CceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCc
Confidence 899999999864332 222489999999999 88887652 223 588999999999865 21
Q ss_pred ---ChHHHHHHHHHhCCCC--------------ceEEEEEeccCh----------------------------hHHHHHH
Q psy8497 177 ---GFVEDITWIYSQLPPM--------------KQMLVVSATYSH----------------------------DNLATLQ 211 (2355)
Q Consensus 177 ---GF~SrLeeILs~Lppn--------------rQILLLSATLS~----------------------------EILElLk 211 (2355)
..+..+..++..+... .+.+.||-.-.. .+...+.
T Consensus 231 ~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~ 310 (896)
T PRK13104 231 DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALK 310 (896)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHH
Confidence 1233444444443221 122333331000 0011111
Q ss_pred H--hcc-C-Ceee------ccCCC-cc----------------------------c------------------------
Q psy8497 212 K--YMV-D-PLLI------RPEDA-TR----------------------------P------------------------ 228 (2355)
Q Consensus 212 K--fLr-d-PvII------rVese-e~----------------------------~------------------------ 228 (2355)
. ++. + .+++ .++.. .. .
T Consensus 311 A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~ 390 (896)
T PRK13104 311 AHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTAD 390 (896)
T ss_pred HHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCCh
Confidence 0 010 0 0111 00000 00 0
Q ss_pred --ccc----ceEEEEeccCCC---------CCcchhhhHHHHHHHHHh--cCCCCeEEEEEcccccHHHHHHHHHhcCCc
Q psy8497 229 --LLG----VKQLVALIPECK---------NPSLRYVDEEKKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLANANFG 291 (2355)
Q Consensus 229 --~se----VrQvVvqVpe~k---------n~sLt~lsKkeaLLqLLe--rl~kgRVLVFSQTRKmAEiLADyLrErGIK 291 (2355)
... ...-+..+|..+ ..+.+...+..++.+.+. ...+.+|||||.++..++.|...|...|+.
T Consensus 391 te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~ 470 (896)
T PRK13104 391 TEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIK 470 (896)
T ss_pred hHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 000 011122222211 111122233344444332 224569999999999999999999999999
Q ss_pred cEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc-------------------------------------
Q psy8497 292 AEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV------------------------------------- 334 (2355)
Q Consensus 292 VarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV------------------------------------- 334 (2355)
+..||+.+.+.++..+.+.|+.| .|+|||+++++|+||.=-
T Consensus 471 h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 548 (896)
T PRK13104 471 HQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAG 548 (896)
T ss_pred eEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcC
Confidence 99999999999999999999999 499999999999997521
Q ss_pred -cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 335 -DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 335 -DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
=+||....+-|..-+.|..|||||.|.+|....|++-++.-+
T Consensus 549 GL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 549 GLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred CCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 258888888899999999999999999999999997665544
No 107
>KOG0950|consensus
Probab=99.89 E-value=1.1e-22 Score=254.19 Aligned_cols=341 Identities=17% Similarity=0.252 Sum_probs=243.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHH--HHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAF--PYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDV 109 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEAL--n~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anw 109 (2355)
..-.....|+..++.||.+++ +.+++++++|..+||+.|||+++.+.++..+.. ....+|.+.|-.+.++.....
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~---~rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC---RRRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH---HhhceeEecceeehhHHHHhh
Confidence 555666689999999999998 567788999999999999999999999887763 356689999999998888888
Q ss_pred HHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccChHHHHHHHHH
Q psy8497 110 VRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187 (2355)
Q Consensus 110 LREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs 187 (2355)
+..|...+ ++.|-.|.|...-........|.|+|.|+-..++.. ..-.+..+++|||||.|.+.+.+.+..++.++.
T Consensus 289 l~~~~~~~-G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~ 367 (1008)
T KOG0950|consen 289 LSPFSIDL-GFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLA 367 (1008)
T ss_pred hhhhcccc-CCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHH
Confidence 88888777 899999998877666666689999999975433322 112356678999999999999888777777766
Q ss_pred hC-----CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCC-cchhhhHH--------
Q psy8497 188 QL-----PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP-SLRYVDEE-------- 253 (2355)
Q Consensus 188 ~L-----ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~-sLt~lsKk-------- 253 (2355)
.+ ....|+|+||||+++ ...+..++...+....... ..+...+..-...... ........
T Consensus 368 k~~y~~~~~~~~iIGMSATi~N--~~lL~~~L~A~~y~t~fRP----v~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~ 441 (1008)
T KOG0950|consen 368 KILYENLETSVQIIGMSATIPN--NSLLQDWLDAFVYTTRFRP----VPLKEYIKPGSLIYESSRNKVLREIANLYSSNL 441 (1008)
T ss_pred HHHHhccccceeEeeeecccCC--hHHHHHHhhhhheecccCc----ccchhccCCCcccccchhhHHHHHhhhhhhhhc
Confidence 53 344789999999984 3455555543222211110 0111111000000000 00000000
Q ss_pred -----HHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhc--------------------------------------
Q psy8497 254 -----KKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANA-------------------------------------- 288 (2355)
Q Consensus 254 -----eaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrEr-------------------------------------- 288 (2355)
+.+..+.... ...++||||++++.|+.++..+...
T Consensus 442 g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti 521 (1008)
T KOG0950|consen 442 GDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTI 521 (1008)
T ss_pred ccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheec
Confidence 0111111111 1247999999999999888665431
Q ss_pred CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEe---cC-CCCHhHHHHHhhccCCCC--Cc
Q psy8497 289 NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINL---EI-PHDAATYLHRMGRAGRYG--TR 362 (2355)
Q Consensus 289 GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIy---DS-P~SPqSYIQRIGRAGRiG--Qk 362 (2355)
.++++++|.+++.++|..+...|++|-+.||+||+++..|+|+|+..++|-. .. ..+.-+|.||+|||||.| ..
T Consensus 522 ~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 522 PYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred cccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccC
Confidence 1578999999999999999999999999999999999999999999877732 11 226789999999999987 55
Q ss_pred cEEEEEEcccCHHHHHHHHH
Q psy8497 363 GLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 363 GkVIVLVSsdDVEeIEsLrR 382 (2355)
|..|+++...+......+..
T Consensus 602 GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 602 GDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred cceEEEeeccchhHHHHHHh
Confidence 77899998877766655543
No 108
>KOG1000|consensus
Probab=99.89 E-value=1e-22 Score=241.21 Aligned_cols=317 Identities=15% Similarity=0.202 Sum_probs=212.2
Q ss_pred CCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC
Q psy8497 41 FVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN 119 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg 119 (2355)
+..|.|||.+++.+.+. |..+||+++||+|||++++ +|..+.. ..++.|||||.+.+ ..|.+++..|+|.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yyr----aEwplliVcPAsvr----ftWa~al~r~lps 266 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYYR----AEWPLLIVCPASVR----FTWAKALNRFLPS 266 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHHh----hcCcEEEEecHHHh----HHHHHHHHHhccc
Confidence 44789999999999875 5679999999999997766 4444444 35779999999877 6666666666665
Q ss_pred cEEE-EEECCcccc-CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 120 LHVD-YFIGGTQVE-RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 120 LrVV-vytGGkq~r-kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
+..+ ++.+....- ..-...-|.|.+|+.|..+. ..+.-..|.+||+||+|.|++.. ......+...+....++|+
T Consensus 267 ~~pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 267 IHPIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred ccceEEEecccCCccccccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEE
Confidence 5442 222222211 11122569999999875433 34445668999999999998654 3445556666666778999
Q ss_pred EEeccChh----HH---------------HHHHHhccCC---eeeccCCC-----------------------ccccccc
Q psy8497 198 VSATYSHD----NL---------------ATLQKYMVDP---LLIRPEDA-----------------------TRPLLGV 232 (2355)
Q Consensus 198 LSATLS~E----IL---------------ElLkKfLrdP---vIIrVese-----------------------e~~~seV 232 (2355)
||+||.-. +. ++..+|+... +.+..... ....+..
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK 423 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPK 423 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 99997521 11 1111222110 00000000 0001111
Q ss_pred eEEEEe-ccCCCCCcchh-----------------------------hhHHHHHHHHH------hcCCCCeEEEEEcccc
Q psy8497 233 KQLVAL-IPECKNPSLRY-----------------------------VDEEKKLVQLL------SQTPFNQCVIFSNYQL 276 (2355)
Q Consensus 233 rQvVvq-Vpe~kn~sLt~-----------------------------lsKkeaLLqLL------erl~kgRVLVFSQTRK 276 (2355)
++.+.. .....+..... ..+.....+.+ ...+..+.|||+....
T Consensus 424 rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~ 503 (689)
T KOG1000|consen 424 RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQI 503 (689)
T ss_pred ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHH
Confidence 222222 21111100000 00111122222 2234469999999999
Q ss_pred cHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC-CCccE-EEEecccccccCCCCccEEEEecCCCCHhHHHHHhh
Q psy8497 277 RPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR-GKVRI-LVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354 (2355)
Q Consensus 277 mAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS-GEIdV-LVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIG 354 (2355)
+++.+..++.++++...+|+|.++..+|..+.+.|+. .++.| |++..++++||++.+++.|++...+|||--++|+-.
T Consensus 504 vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAED 583 (689)
T KOG1000|consen 504 VLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAED 583 (689)
T ss_pred HHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechh
Confidence 9999999999999999999999999999999999995 45665 778899999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEEE
Q psy8497 355 RAGRYGTRGLVITIV 369 (2355)
Q Consensus 355 RAGRiGQkGkVIVLV 369 (2355)
||||+||+..|.+++
T Consensus 584 RaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 584 RAHRIGQKSSVFVQY 598 (689)
T ss_pred hhhhccccceeeEEE
Confidence 999999887655544
No 109
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.3e-21 Score=245.21 Aligned_cols=327 Identities=17% Similarity=0.169 Sum_probs=227.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHH-HHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAAL-NKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAIL-erL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
+|+ .+++.|.-+.-.|.+|+ |..+.||+|||++++++++ ..|. +..+-||+|+..||.|..+|+..++..+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-----GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 566 88999999887776664 9999999999999999995 4543 4468899999999999999999999888
Q ss_pred CCcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhhc------ccCcCceEEEecccchhc-cc-----------
Q psy8497 118 KNLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLKY------LNMDSVRLFIMDEADKLI-NT----------- 176 (2355)
Q Consensus 118 PgLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr~------LdLSkIdLLIVDEAHRLk-N~----------- 176 (2355)
++.+.+++|+..... ....++|+++|+..| .+++.... +....+.++|||||+.++ +.
T Consensus 150 -Glsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 150 -GLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred -CCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 999999999754432 223489999999999 78887654 236788999999999865 21
Q ss_pred ----ChHHHHHHHHHhCCCC--------ceEEEEEeccC---------------------hhHHHHHH-Hh-c-cC-Cee
Q psy8497 177 ----GFVEDITWIYSQLPPM--------KQMLVVSATYS---------------------HDNLATLQ-KY-M-VD-PLL 219 (2355)
Q Consensus 177 ----GF~SrLeeILs~Lppn--------rQILLLSATLS---------------------~EILElLk-Kf-L-rd-PvI 219 (2355)
..+..+..+...+... .+.+.||..-. ..+...+. .+ + .+ .++
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 1344555555555321 22233333100 00011111 00 0 00 011
Q ss_pred e------ccCC-Cc----------------------------cc--------------------------ccc----ceE
Q psy8497 220 I------RPED-AT----------------------------RP--------------------------LLG----VKQ 234 (2355)
Q Consensus 220 I------rVes-ee----------------------------~~--------------------------~se----VrQ 234 (2355)
+ .+.. .. .. ... ...
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 0 0000 00 00 000 000
Q ss_pred EEEeccCCC---------CCcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 235 LVALIPECK---------NPSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 235 vVvqVpe~k---------n~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
-+..+|..+ ..+.....+...+...+.. ....+|||||.++..++.|...|...++.+..||+. +.+
T Consensus 389 ~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~e 466 (830)
T PRK12904 389 DVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHE 466 (830)
T ss_pred CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHH
Confidence 111222111 1111223455666666643 455699999999999999999999999999999995 789
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCc--------------------------------------cEEEEecCCCC
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAANV--------------------------------------DLVINLEIPHD 345 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLPaV--------------------------------------DTVIIyDSP~S 345 (2355)
|...+..|..+...|+|||+++++|+||+-- =+||....+-|
T Consensus 467 REa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhes 546 (830)
T PRK12904 467 REAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHES 546 (830)
T ss_pred HHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCch
Confidence 9999999999999999999999999998653 25888888999
Q ss_pred HhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 346 AATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
..-..|..|||||.|.+|.+..|++-++.-+
T Consensus 547 rRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 547 RRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred HHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 9999999999999999999999997765544
No 110
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.87 E-value=3.7e-20 Score=214.00 Aligned_cols=317 Identities=17% Similarity=0.160 Sum_probs=217.7
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|+++|+.+-+.+++ ..+.||.|-||+|||.+....+-..|. .+.++.|..|....+.+++..++..+.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~----~G~~vciASPRvDVclEl~~Rlk~aF~-- 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN----QGGRVCIASPRVDVCLELYPRLKQAFS-- 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh----cCCeEEEecCcccchHHHHHHHHHhhc--
Confidence 3899999998877764 578999999999999776555544443 689999999999999998988887653
Q ss_pred CCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 118 KNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
+..+.+++|+...... .++||+|...|+.+. ..+++|||||++...-..-......+-.......-+|+
T Consensus 170 -~~~I~~Lyg~S~~~fr---~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~Iy 238 (441)
T COG4098 170 -NCDIDLLYGDSDSYFR---APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIY 238 (441)
T ss_pred -cCCeeeEecCCchhcc---ccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhcccCceEE
Confidence 4678889988765433 568888877775443 34679999999976422212333344455566778999
Q ss_pred EEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCC--CCeEEEEEccc
Q psy8497 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTP--FNQCVIFSNYQ 275 (2355)
Q Consensus 198 LSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~--kgRVLVFSQTR 275 (2355)
||||++......+..--. ..+.+...-.....+.....++..... .+..-....+|...|+... ...+|||++++
T Consensus 239 lTATp~k~l~r~~~~g~~--~~~klp~RfH~~pLpvPkf~w~~~~~k-~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I 315 (441)
T COG4098 239 LTATPTKKLERKILKGNL--RILKLPARFHGKPLPVPKFVWIGNWNK-KLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEI 315 (441)
T ss_pred EecCChHHHHHHhhhCCe--eEeecchhhcCCCCCCCceEEeccHHH-HhhhccCCHHHHHHHHHHHhcCCcEEEEecch
Confidence 999999766554432111 112222111111111112222222110 0000001134555554332 35899999999
Q ss_pred ccHHHHHHHHHhc-C-CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCC--CCHhHHHH
Q psy8497 276 LRPEVICENLANA-N-FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP--HDAATYLH 351 (2355)
Q Consensus 276 KmAEiLADyLrEr-G-IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP--~SPqSYIQ 351 (2355)
..++.++..|+.. . ..++.+|+. ...|.+.++.|++|++.+||+|.++++|+.+|.++++++-.-. ++...++|
T Consensus 316 ~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQ 393 (441)
T COG4098 316 ETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQ 393 (441)
T ss_pred HHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHH
Confidence 9999999999653 2 345677774 4678999999999999999999999999999999988866544 68999999
Q ss_pred HhhccCCCC--CccEEEEEEcccCHHHHHHH
Q psy8497 352 RMGRAGRYG--TRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 352 RIGRAGRiG--QkGkVIVLVSsdDVEeIEsL 380 (2355)
.+||+||.- -.|.++.|-...+..|....
T Consensus 394 IaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ 424 (441)
T COG4098 394 IAGRVGRSLERPTGDVLFFHYGKSKAMKQAR 424 (441)
T ss_pred HhhhccCCCcCCCCcEEEEeccchHHHHHHH
Confidence 999999954 45777777766666665544
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=7e-21 Score=240.15 Aligned_cols=328 Identities=15% Similarity=0.186 Sum_probs=221.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|++.|.-+.=.|.+|+ |..+.||.|||+++.++++.... .+..+-||+|+..||.|-++|+..+..++
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al----~G~~v~vvT~neyLA~Rd~e~~~~~~~~L- 148 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL----TGKGVHVVTVNEYLSSRDATEMGELYRWL- 148 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH----cCCCeEEEeccHHHHHhhHHHHHHHHHhc-
Confidence 565 89999999887777766 99999999999999988876655 47789999999999999999999999988
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHHH-HHHHhh------cccCcCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRIK-QMIKLK------YLNMDSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErLL-DLLdrr------~LdLSkIdLLIVDEAHRLk-N~------------ 176 (2355)
++.|.++.++.... .....++|+++|...|- ++|+.. ....+.+.+.||||++.++ +.
T Consensus 149 Gl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~ 228 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAE 228 (796)
T ss_pred CCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCC
Confidence 89999998864332 23344899999987542 333321 1224677899999999754 21
Q ss_pred ---ChHHHHHHHHHhCCCC-------------------ceEEEEEec-------------c--------ChhHHHHHHH-
Q psy8497 177 ---GFVEDITWIYSQLPPM-------------------KQMLVVSAT-------------Y--------SHDNLATLQK- 212 (2355)
Q Consensus 177 ---GF~SrLeeILs~Lppn-------------------rQILLLSAT-------------L--------S~EILElLkK- 212 (2355)
..+..+..++..+... .+.+.+|.. + ...+...+..
T Consensus 229 ~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~ 308 (796)
T PRK12906 229 KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRAN 308 (796)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHH
Confidence 1233333333332211 112223220 0 0011111111
Q ss_pred h-cc-C-Ceee------ccCC-Cc----------------------------c----------------------cc---
Q psy8497 213 Y-MV-D-PLLI------RPED-AT----------------------------R----------------------PL--- 229 (2355)
Q Consensus 213 f-Lr-d-PvII------rVes-ee----------------------------~----------------------~~--- 229 (2355)
+ +. + .+++ .+.. .. . ..
T Consensus 309 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e 388 (796)
T PRK12906 309 YIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTE 388 (796)
T ss_pred HHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 0 10 0 0110 0000 00 0 00
Q ss_pred -cc----ceEEEEeccCCCC---------CcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccE
Q psy8497 230 -LG----VKQLVALIPECKN---------PSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAE 293 (2355)
Q Consensus 230 -se----VrQvVvqVpe~kn---------~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVa 293 (2355)
.. ...-+..+|..+. .+.....+...+...+.. ....+|||||.++..++.|...|...++.+.
T Consensus 389 ~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~ 468 (796)
T PRK12906 389 EEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHA 468 (796)
T ss_pred HHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCee
Confidence 00 0011122222110 111222344566666532 3557999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC---Ccc-----EEEEecCCCCHhHHHHHhhccCCCCCccEE
Q psy8497 294 YLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA---NVD-----LVINLEIPHDAATYLHRMGRAGRYGTRGLV 365 (2355)
Q Consensus 294 rLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP---aVD-----TVIIyDSP~SPqSYIQRIGRAGRiGQkGkV 365 (2355)
.||+.+...++..+...++.|. |+|||+++++|+||+ .|. +||.++.|.+...|.|++||+||.|.+|.+
T Consensus 469 ~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 469 VLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred EecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 9999999888888888877776 999999999999994 788 999999999999999999999999999999
Q ss_pred EEEEcccCHHH
Q psy8497 366 ITIVSAESLVK 376 (2355)
Q Consensus 366 IVLVSsdDVEe 376 (2355)
+.|++..+.-+
T Consensus 547 ~~~~sleD~l~ 557 (796)
T PRK12906 547 RFYLSLEDDLM 557 (796)
T ss_pred EEEEeccchHH
Confidence 99997765443
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.85 E-value=2.5e-20 Score=233.61 Aligned_cols=200 Identities=15% Similarity=0.197 Sum_probs=147.5
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEec--
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLE-- 341 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyD-- 341 (2355)
.+.++||||.++++++.|+++|...|+.+..+||+++..+|..++..|+.|.+.|||||+++++|+|+|.+++||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 346999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHH-----HhhccccccccCCCccchhhhhhhHHHHHHHH
Q psy8497 342 ---IPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLM-----GEINLDHAFNVGLVPDNLTGDQINWTQRVQTL 413 (2355)
Q Consensus 342 ---SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLr-----ReLKLKLaLe~eIVPkgLlKeqiDw~~~LERI 413 (2355)
.|.+...|+|++|||||. ..|.+++|+...+..+...+. +..+..+...+.++|+.+.+...+.......
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~~~~~~iq~~~~~~~~~~p~~~~~~~~~~~~~~~~- 598 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDILDIELK- 598 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHhHHHHHhhhhhhcCCCCcccCcchHHHhhhhhh-
Confidence 678999999999999996 789999999988877655553 3455667778889999887776443221110
Q ss_pred HhCCccHHH-HHHHHHHHHHHHHHHhhcCCccCCCChhhhhcccccccCcccccc
Q psy8497 414 LAKPLDQAQ-EREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTD 467 (2355)
Q Consensus 414 LKnPLdeeq-ErEELEQLeeElkKIEneLkeLga~~kEaaeKe~~KeAakWrddd 467 (2355)
......... ....... ....++++.++.+...|.++.+.+.++.++.+++..
T Consensus 599 ~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i 651 (655)
T TIGR00631 599 EKEDAAKKKKKGEDLSD--LSKKELKKLIKQLEKEMKQAARNLEFEEAARLRDEI 651 (655)
T ss_pred cccchhhcccccccccc--CCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 000000000 0000000 011223334444555566666677777777766543
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.85 E-value=9.7e-20 Score=230.78 Aligned_cols=323 Identities=16% Similarity=0.125 Sum_probs=210.7
Q ss_pred CCcHHHHHHHHHHHcC---C-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVLNG---Y-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG---R-NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
..+++|..++..+... . .++|.||||.|||++.++.++..+........++++|.|++++++++.+.+++++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~- 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF- 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc-
Confidence 3489999999998863 3 6899999999999999988887776422357889999999999999999999875443
Q ss_pred CcEEEEEECCccccCCC------------------CCCcEEEECHHHHHHHHHhhc----ccCcCceEEEecccchhccc
Q psy8497 119 NLHVDYFIGGTQVERPK------------------RPVQIVVGSPGRIKQMIKLKY----LNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqi------------------rq~DILVTTPErLLDLLdrr~----LdLSkIdLLIVDEAHRLkN~ 176 (2355)
.+....+.+........ ....++++|+..+.......+ +......++|+||+|.+...
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 11111122222111000 014455555544333111111 11133458999999988766
Q ss_pred ChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccc-cccceEEEEeccCCCCCcchhhhHHH
Q psy8497 177 GFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRP-LLGVKQLVALIPECKNPSLRYVDEEK 254 (2355)
Q Consensus 177 GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~-~seVrQvVvqVpe~kn~sLt~lsKke 254 (2355)
.....+..++..+ .....+|+||||++......+...+.....+........ ............... ......
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-----~~~~~~ 428 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVE-----DGPQEE 428 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhh-----hhhhHh
Confidence 3333344444433 346789999999999888888876654433332211000 000000000000000 000001
Q ss_pred HHHHHH-hcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHh----CCCccEEEEeccccccc
Q psy8497 255 KLVQLL-SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFK----RGKVRILVTTDLAARGI 329 (2355)
Q Consensus 255 aLLqLL-erl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFR----SGEIdVLVSTSALGEGL 329 (2355)
.+.... ......+|||.|+|+..|..+...|+..+..+..+||.+...+|.+.++.+. .....|+|||++++.||
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 111111 1223469999999999999999999998888999999999999998888655 46788999999999999
Q ss_pred CCCCccEEEEecCCCCHhHHHHHhhccCCCC--CccEEEEEEcccCH
Q psy8497 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYG--TRGLVITIVSAESL 374 (2355)
Q Consensus 330 DLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG--QkGkVIVLVSsdDV 374 (2355)
|+ +.+++|-=-+ ...+++||+||++|.| ..+.++++......
T Consensus 509 Di-dfd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 509 DI-DFDVLITELA--PIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred cc-ccCeeeecCC--CHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 99 4777764434 4899999999999999 67778877755433
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.1e-19 Score=228.38 Aligned_cols=322 Identities=20% Similarity=0.208 Sum_probs=224.5
Q ss_pred CCCcHHHHHHHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
..|.+-|..++..|... ...++.+.||+|||.+|+-++-..|. .++.+|||||-.+|..|+.+.|+..+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~----~GkqvLvLVPEI~Ltpq~~~rf~~rFg-- 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA----QGKQVLVLVPEIALTPQLLARFKARFG-- 270 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH----cCCEEEEEeccccchHHHHHHHHHHhC--
Confidence 47899999999999865 45999999999999999988888877 478999999999999999999998763
Q ss_pred CCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc--cc---ChHHHHHH
Q psy8497 118 KNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI--NT---GFVEDITW 184 (2355)
Q Consensus 118 PgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk--N~---GF~SrLee 184 (2355)
..+.+++++-.... ......|||+|-..| ++.+.++++|||||-|--. .. .+..+-..
T Consensus 271 --~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 271 --AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred --CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 56777776654332 123488999998877 6678899999999999643 21 23344444
Q ss_pred HHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCc--chhhhHHHHHHHHHhc
Q psy8497 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPS--LRYVDEEKKLVQLLSQ 262 (2355)
Q Consensus 185 ILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~s--Lt~lsKkeaLLqLLer 262 (2355)
++......+++|+-||||+-+.......- ....+...............++-+....... .........+.+.|..
T Consensus 342 ~~Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ 419 (730)
T COG1198 342 VLRAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLER 419 (730)
T ss_pred HHHHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhc
Confidence 45554567899999999996554443211 1111111111111111111111111111111 1122333444444443
Q ss_pred CCCCeEEEEEccc------------------------------------------------------------ccHHHHH
Q psy8497 263 TPFNQCVIFSNYQ------------------------------------------------------------LRPEVIC 282 (2355)
Q Consensus 263 l~kgRVLVFSQTR------------------------------------------------------------KmAEiLA 282 (2355)
+.++|||.+.+ .-.+.++
T Consensus 420 --geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterie 497 (730)
T COG1198 420 --GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIE 497 (730)
T ss_pred --CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHH
Confidence 35777777632 1235666
Q ss_pred HHHHhc--CCccEEeeCCCCH--HHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCC------------CH
Q psy8497 283 ENLANA--NFGAEYLSGAQDQ--KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH------------DA 346 (2355)
Q Consensus 283 DyLrEr--GIKVarLHGgMSq--EERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~------------SP 346 (2355)
+.|... +.++.+++++... ..-..++..|..|+.+|||.|+++..|+|+|++++|.++|.|. ..
T Consensus 498 eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~f 577 (730)
T COG1198 498 EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTF 577 (730)
T ss_pred HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHH
Confidence 666654 4678889988764 3456789999999999999999999999999999999999884 45
Q ss_pred hHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 347 ATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 347 qSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+.+.|.+|||||.+.+|.|++.....+...+..++.
T Consensus 578 qll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 578 QLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 788999999999999999999998888777666644
No 115
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.84 E-value=2.8e-20 Score=190.39 Aligned_cols=158 Identities=25% Similarity=0.467 Sum_probs=133.1
Q ss_pred cHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE
Q psy8497 45 SPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124 (2355)
Q Consensus 45 RPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv 124 (2355)
+|+|.++++.+.+++++||.+|||+|||++++++++..+.+. ....+||++|+++|+.|+.+.+..++.. +.+++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccccccccccccc-ccccccc
Confidence 689999999999999999999999999999999999888742 3458999999999999999999999876 4788888
Q ss_pred EECCcccc----C-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC--CceEEE
Q psy8497 125 FIGGTQVE----R-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP--MKQMLV 197 (2355)
Q Consensus 125 ytGGkq~r----k-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp--nrQILL 197 (2355)
++++.... . ....++|+|+||++|..++......+..+++|||||+|.+....+...+..++..+.. ..|+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~ 157 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIIL 157 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEE
T ss_pred ccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEE
Confidence 88876532 1 1134899999999999998875556677999999999999987777888888888733 589999
Q ss_pred EEeccChh
Q psy8497 198 VSATYSHD 205 (2355)
Q Consensus 198 LSATLS~E 205 (2355)
+|||+...
T Consensus 158 ~SAT~~~~ 165 (169)
T PF00270_consen 158 LSATLPSN 165 (169)
T ss_dssp EESSSTHH
T ss_pred EeeCCChh
Confidence 99999943
No 116
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.3e-19 Score=229.57 Aligned_cols=328 Identities=13% Similarity=0.160 Sum_probs=220.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+--.|.+|+ |..++||.|||++++++++.... .+..|+||+|+..||.|..+|+..+..++
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al----~g~~VhIvT~ndyLA~RD~e~m~~l~~~l- 150 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNAL----TGKGVHVITVNDYLARRDAENNRPLFEFL- 150 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHh----cCCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 565 78888888776666554 99999999999999999886555 35559999999999999999999999888
Q ss_pred CcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhh-ccc-----CcCceEEEecccchhcccC------------
Q psy8497 119 NLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLK-YLN-----MDSVRLFIMDEADKLINTG------------ 177 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr-~Ld-----LSkIdLLIVDEAHRLkN~G------------ 177 (2355)
++.|.++.++..... ..-.++|+++|+..| ++++... .+. ...+.++||||++.++-..
T Consensus 151 Glsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~ 230 (908)
T PRK13107 151 GLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAE 230 (908)
T ss_pred CCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCc
Confidence 999999988765432 223489999999998 7877765 222 2778899999999865211
Q ss_pred ----hHHHHHHHHHhCCC-------------------CceEEEEEec--------c--------------------ChhH
Q psy8497 178 ----FVEDITWIYSQLPP-------------------MKQMLVVSAT--------Y--------------------SHDN 206 (2355)
Q Consensus 178 ----F~SrLeeILs~Lpp-------------------nrQILLLSAT--------L--------------------S~EI 206 (2355)
.+..+..++..+.. ..+.+.||-. + ...+
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i 310 (908)
T PRK13107 231 DSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHV 310 (908)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHH
Confidence 22333333322211 1122333320 0 0000
Q ss_pred HHHHHH--hc-cC-Ceee------ccCC-Cccc-----------------------------------------------
Q psy8497 207 LATLQK--YM-VD-PLLI------RPED-ATRP----------------------------------------------- 228 (2355)
Q Consensus 207 LElLkK--fL-rd-PvII------rVes-ee~~----------------------------------------------- 228 (2355)
...+.. ++ .+ .+++ .+.. ....
T Consensus 311 ~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GM 390 (908)
T PRK13107 311 NAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGM 390 (908)
T ss_pred HHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcc
Confidence 011110 00 00 0110 0000 0000
Q ss_pred -------ccc----ceEEEEeccCCC---------CCcchhhhHHHHHHHHHh--cCCCCeEEEEEcccccHHHHHHHHH
Q psy8497 229 -------LLG----VKQLVALIPECK---------NPSLRYVDEEKKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLA 286 (2355)
Q Consensus 229 -------~se----VrQvVvqVpe~k---------n~sLt~lsKkeaLLqLLe--rl~kgRVLVFSQTRKmAEiLADyLr 286 (2355)
... ...-+..+|... ..+.+...+..++.+.+. ...+.+|||||.++..++.|..+|.
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~ 470 (908)
T PRK13107 391 TGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMV 470 (908)
T ss_pred cCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHH
Confidence 000 011122222111 111112233333333332 1234689999999999999999999
Q ss_pred hcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc--------------------------------
Q psy8497 287 NANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV-------------------------------- 334 (2355)
Q Consensus 287 ErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV-------------------------------- 334 (2355)
..++.+..||+.+...++..+.+.|+.|. |+|||+++++|+||.=-
T Consensus 471 ~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 548 (908)
T PRK13107 471 KEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEV 548 (908)
T ss_pred HCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999998 99999999999998621
Q ss_pred -----cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 335 -----DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 335 -----DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
=+||....+-|..-..|..|||||.|.+|....|++-++.-+
T Consensus 549 ~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 549 VAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 268888889999999999999999999999999997766544
No 117
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.84 E-value=2.6e-20 Score=233.54 Aligned_cols=331 Identities=17% Similarity=0.202 Sum_probs=217.1
Q ss_pred CCCcHHHHHHHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCC-CCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 42 VKESPIQMAAFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ-QPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~q-ggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
..|++||.++++|+.. ..++|++++||+|||++.+..+.. +...... .+++||+||+..+ .+|..++..
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~~~~~~~liv~p~s~~----~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIKVYLGPALIVVPASLL----SNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhcccCCCCCeEEEecHHHH----HHHHHHHhh
Confidence 5789999999999772 567999999999999776655443 3322222 5789999999887 667767677
Q ss_pred ccCCcE-EEEEECCccc----c----CCCC-----CCcEEEECHHHHHHHH-HhhcccCcCceEEEecccchhcccChHH
Q psy8497 116 HVKNLH-VDYFIGGTQV----E----RPKR-----PVQIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINTGFVE 180 (2355)
Q Consensus 116 ~APgLr-VVvytGGkq~----r----kqir-----q~DILVTTPErLLDLL-drr~LdLSkIdLLIVDEAHRLkN~GF~S 180 (2355)
++|.++ +..+.|.... . .... .++|+++||+.|...+ ....+....|+.+|+||+|++++.. .
T Consensus 412 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~--s 489 (866)
T COG0553 412 FAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ--S 489 (866)
T ss_pred hCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh--h
Confidence 778888 8888887752 1 1111 1789999999986632 3345567789999999999988754 2
Q ss_pred HHHHHHHhCCCCceEEEEEeccChhHHHHHHHhcc---CCeee-------------------------------------
Q psy8497 181 DITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV---DPLLI------------------------------------- 220 (2355)
Q Consensus 181 rLeeILs~LppnrQILLLSATLS~EILElLkKfLr---dPvII------------------------------------- 220 (2355)
.....+..+....+ +++|.||..+.+..+..++. .|...
T Consensus 490 ~~~~~l~~~~~~~~-~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (866)
T COG0553 490 SEGKALQFLKALNR-LDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKL 568 (866)
T ss_pred HHHHHHHHHhhcce-eeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Confidence 22222223332222 66666664322221111110 00000
Q ss_pred ------ccCCCcc-cc---------------------------c-------cceE---E---------------------
Q psy8497 221 ------RPEDATR-PL---------------------------L-------GVKQ---L--------------------- 235 (2355)
Q Consensus 221 ------rVesee~-~~---------------------------s-------eVrQ---v--------------------- 235 (2355)
+...... .. . .+.. .
T Consensus 569 i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 648 (866)
T COG0553 569 LSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRL 648 (866)
T ss_pred HHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 0000000 00 0 0000 0
Q ss_pred --EEeccCCCCCc--c-----------------------hhh-hHHHHHHHHH---hcCCCC--eEEEEEcccccHHHHH
Q psy8497 236 --VALIPECKNPS--L-----------------------RYV-DEEKKLVQLL---SQTPFN--QCVIFSNYQLRPEVIC 282 (2355)
Q Consensus 236 --VvqVpe~kn~s--L-----------------------t~l-sKkeaLLqLL---erl~kg--RVLVFSQTRKmAEiLA 282 (2355)
+...+...... . ... .+...+..++ ...... ++|||++++.+++.|.
T Consensus 649 r~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~ 728 (866)
T COG0553 649 RQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLE 728 (866)
T ss_pred HHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHH
Confidence 00000000000 0 000 2334444444 112234 9999999999999999
Q ss_pred HHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC--CccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCC
Q psy8497 283 ENLANANFGAEYLSGAQDQKARLASLDSFKRG--KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360 (2355)
Q Consensus 283 DyLrErGIKVarLHGgMSqEERqeILErFRSG--EIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG 360 (2355)
.+|...++.+.+++|.++...|..+++.|+++ ...+|+++.+++.|||+..+++||++|++|||....|++.||+|+|
T Consensus 729 ~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Rig 808 (866)
T COG0553 729 DYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIG 808 (866)
T ss_pred HHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999985 5567889999999999999999999999999999999999999999
Q ss_pred CccEEEEEEcccCHHHHHHH
Q psy8497 361 TRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 361 QkGkVIVLVSsdDVEeIEsL 380 (2355)
++..|.++.........+.+
T Consensus 809 Q~~~v~v~r~i~~~tiEe~i 828 (866)
T COG0553 809 QKRPVKVYRLITRGTIEEKI 828 (866)
T ss_pred CcceeEEEEeecCCcHHHHH
Confidence 87766655544443333333
No 118
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=6e-19 Score=223.98 Aligned_cols=138 Identities=15% Similarity=0.260 Sum_probs=116.8
Q ss_pred HHHHHH-----HCCCCCC---cHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 32 IRQGLQ-----ENGFVKE---SPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 32 LLK~Lq-----a~GF~eL---RPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
+.+.+. ..||..| +|||.++++.++.++++|..++||+|||++|++|++..+.. +..++||+|++.||
T Consensus 73 ~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~----g~~v~IVTpTrELA 148 (970)
T PRK12899 73 VCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT----GKPVHLVTVNDYLA 148 (970)
T ss_pred HHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----cCCeEEEeCCHHHH
Confidence 555555 5788877 99999999999999999999999999999999999977653 33589999999999
Q ss_pred HHHHHHHHHHhcccCCcEEEEEECCccccCC--CCCCcEEEECHHHH-HHHHHhhcccCc-------CceEEEecccchh
Q psy8497 104 VQITDVVRSVGAHVKNLHVDYFIGGTQVERP--KRPVQIVVGSPGRI-KQMIKLKYLNMD-------SVRLFIMDEADKL 173 (2355)
Q Consensus 104 qQ~anwLREFgk~APgLrVVvytGGkq~rkq--irq~DILVTTPErL-LDLLdrr~LdLS-------kIdLLIVDEAHRL 173 (2355)
.|..+++..+..++ ++++.+++|+...... ...++|+|+||.+| .+++....+.+. .+.++|||||+.|
T Consensus 149 ~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsm 227 (970)
T PRK12899 149 QRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSI 227 (970)
T ss_pred HHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhh
Confidence 99999999998887 7999999998765432 12489999999999 999987755544 5589999999987
Q ss_pred c
Q psy8497 174 I 174 (2355)
Q Consensus 174 k 174 (2355)
+
T Consensus 228 L 228 (970)
T PRK12899 228 L 228 (970)
T ss_pred h
Confidence 5
No 119
>KOG1002|consensus
Probab=99.82 E-value=1.7e-19 Score=213.52 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=100.6
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC-CccE-EEEecccccccCCCCccEEEEecC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG-KVRI-LVTTDLAARGIDAANVDLVINLEI 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG-EIdV-LVSTSALGEGLDLPaVDTVIIyDS 342 (2355)
.-+.|||++...+++.+.-.|.+.|+.++-|.|+|++..|...|+.|.+. ++.| ||+-.++++-|||..+..|+++|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 34899999999999999999999999999999999999999999999964 5554 778899999999999999999999
Q ss_pred CCCHhHHHHHhhccCCCCC--ccEEEEEEcccCHHH
Q psy8497 343 PHDAATYLHRMGRAGRYGT--RGLVITIVSAESLVK 376 (2355)
Q Consensus 343 P~SPqSYIQRIGRAGRiGQ--kGkVIVLVSsdDVEe 376 (2355)
-|||..-.|+..|.||+|| +.+|+.|+...+++.
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~ 753 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEE 753 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhccHHH
Confidence 9999999999999999995 667777777665543
No 120
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.5e-18 Score=218.92 Aligned_cols=314 Identities=19% Similarity=0.215 Sum_probs=222.8
Q ss_pred cHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE
Q psy8497 45 SPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124 (2355)
Q Consensus 45 RPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv 124 (2355)
+.+..+.+..+.+..-+||++|||+|||.+.-..++.... ...+.+.++-|.+..|..+.+.+.+-....++-.|++
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY 128 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGY 128 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeE
Confidence 4455566677777778999999999999654444443322 4566788888999888888888877655544555544
Q ss_pred EECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccCh-HHHHHHHHHhCCCCceEEEEEecc
Q psy8497 125 FIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGF-VEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 125 ytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~GF-~SrLeeILs~LppnrQILLLSATL 202 (2355)
-+-.... ......|-++|-+.|+..+..+.+ +..+++|||||+|. .++..+ ...+..++...+...++|+||||+
T Consensus 129 ~iRfe~~--~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 129 SIRFESK--VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred EEEeecc--CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 4332221 122367999999999988887664 88999999999994 444443 344555677777779999999999
Q ss_pred ChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHH
Q psy8497 203 SHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVIC 282 (2355)
Q Consensus 203 S~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLA 282 (2355)
..+ .+..++.+.-++.+.....+ +...+..... ........+...+.+......+-+|||.+.....+.++
T Consensus 206 d~~---rfs~~f~~apvi~i~GR~fP---Vei~Y~~~~~---~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~ 276 (845)
T COG1643 206 DAE---RFSAYFGNAPVIEIEGRTYP---VEIRYLPEAE---ADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTA 276 (845)
T ss_pred CHH---HHHHHcCCCCEEEecCCccc---eEEEecCCCC---cchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHH
Confidence 743 34555554444444443322 2222211111 11113333444455555555789999999999999999
Q ss_pred HHHHh----cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEE--------Eec---------
Q psy8497 283 ENLAN----ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI--------NLE--------- 341 (2355)
Q Consensus 283 DyLrE----rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVI--------IyD--------- 341 (2355)
+.|.+ ..+.+..|||.|+..++.++++---.+.-+|++||++.+.+|.||.+.+|| .|+
T Consensus 277 ~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~ 356 (845)
T COG1643 277 EWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLE 356 (845)
T ss_pred HHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeee
Confidence 99998 347789999999999999987766667666999999999999999999999 222
Q ss_pred -CCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 342 -IPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 342 -SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.|.|-.+..||.|||||. .+|.||.+++..+.
T Consensus 357 ~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~ 389 (845)
T COG1643 357 TEPISKASADQRAGRAGRT-GPGICYRLYSEEDF 389 (845)
T ss_pred EEEechhhhhhhccccccC-CCceEEEecCHHHH
Confidence 233778899999999995 78999999986443
No 121
>KOG1015|consensus
Probab=99.80 E-value=3.7e-19 Score=219.90 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=106.5
Q ss_pred HHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHh----------------------cCCccEEeeCCCCHHHHHHHHH
Q psy8497 254 KKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLAN----------------------ANFGAEYLSGAQDQKARLASLD 309 (2355)
Q Consensus 254 eaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrE----------------------rGIKVarLHGgMSqEERqeILE 309 (2355)
..|+.||... -+.++|||+++...++.|..+|.. .|..+.+|+|.+...+|..+.+
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 4455555433 246999999999999999999975 2467899999999999999999
Q ss_pred HHhCCC----ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 310 SFKRGK----VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 310 rFRSGE----IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
.|++.. -.+||+|+|++.||||-+++-|||||..|||.-++|.|=|+.|.||...|++|.......+.+.|
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKI 1283 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKI 1283 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHH
Confidence 999753 24799999999999999999999999999999999999999999988888877755544444444
No 122
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.79 E-value=6.5e-18 Score=212.54 Aligned_cols=304 Identities=14% Similarity=0.153 Sum_probs=179.5
Q ss_pred CCcHHHHHHHHHHHc----------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLN----------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
.++++|.+|+..+.. .+.+||+.+||+|||++++..+...+. ....++||||||+..|..|+.+.+..
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~--~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE--LLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh--hcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 479999999988752 246999999999999887766544432 24567899999999999999999998
Q ss_pred HhcccCCcEEEEEECCcc-ccC--CCCCCcEEEECHHHHHHHHHhh--cccC-cCceEEEecccchhcccChHHHHHHHH
Q psy8497 113 VGAHVKNLHVDYFIGGTQ-VER--PKRPVQIVVGSPGRIKQMIKLK--YLNM-DSVRLFIMDEADKLINTGFVEDITWIY 186 (2355)
Q Consensus 113 Fgk~APgLrVVvytGGkq-~rk--qirq~DILVTTPErLLDLLdrr--~LdL-SkIdLLIVDEAHRLkN~GF~SrLeeIL 186 (2355)
++...+ ...+... ... ......|+|+|.++|...+... .+.. ..-.+|||||||+.... .+...+
T Consensus 316 ~~~~~~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~~~~l 386 (667)
T TIGR00348 316 LQKDCA-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----ELAKNL 386 (667)
T ss_pred hCCCCC-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HHHHHH
Confidence 853210 0011110 000 1112679999999997543321 1111 11128999999986533 233333
Q ss_pred -HhCCCCceEEEEEeccChhHHH-HHHHhc--cCCeeeccCCCc----cccccceEEEEeccCCC---------------
Q psy8497 187 -SQLPPMKQMLVVSATYSHDNLA-TLQKYM--VDPLLIRPEDAT----RPLLGVKQLVALIPECK--------------- 243 (2355)
Q Consensus 187 -s~LppnrQILLLSATLS~EILE-lLkKfL--rdPvIIrVesee----~~~seVrQvVvqVpe~k--------------- 243 (2355)
..+ +...+|+|||||...... ....+. ....+....... ....++...........
T Consensus 387 ~~~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~ 465 (667)
T TIGR00348 387 KKAL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFEL 465 (667)
T ss_pred HhhC-CCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHh
Confidence 344 457899999999642111 111110 111111111110 00011110000000000
Q ss_pred -----CCcch-h------------------hhHHHHHHHHHh---cCCCCeEEEEEcccccHHHHHHHHHhc-----CCc
Q psy8497 244 -----NPSLR-Y------------------VDEEKKLVQLLS---QTPFNQCVIFSNYQLRPEVICENLANA-----NFG 291 (2355)
Q Consensus 244 -----n~sLt-~------------------lsKkeaLLqLLe---rl~kgRVLVFSQTRKmAEiLADyLrEr-----GIK 291 (2355)
..... . ......+++.+. .....+++|||.++..|..+.+.|.+. +..
T Consensus 466 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~ 545 (667)
T TIGR00348 466 LPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEAS 545 (667)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCe
Confidence 00000 0 000011111111 112369999999999999999888664 234
Q ss_pred cEEeeCCCCHH---------------------HHHHHHHHHhC-CCccEEEEecccccccCCCCccEEEEecCCCCHhHH
Q psy8497 292 AEYLSGAQDQK---------------------ARLASLDSFKR-GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATY 349 (2355)
Q Consensus 292 VarLHGgMSqE---------------------ERqeILErFRS-GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSY 349 (2355)
...+++..... ....++++|++ +.++|||+++++.+|+|.|.+.++++.-+ ...+.+
T Consensus 546 ~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKp-lk~h~L 624 (667)
T TIGR00348 546 AIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKP-LKYHGL 624 (667)
T ss_pred eEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecc-ccccHH
Confidence 45555543322 22478899986 68899999999999999999998886554 445679
Q ss_pred HHHhhccCCC
Q psy8497 350 LHRMGRAGRY 359 (2355)
Q Consensus 350 IQRIGRAGRi 359 (2355)
+|++||+.|.
T Consensus 625 lQai~R~nR~ 634 (667)
T TIGR00348 625 LQAIARTNRI 634 (667)
T ss_pred HHHHHHhccc
Confidence 9999999994
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.79 E-value=2.6e-17 Score=211.68 Aligned_cols=332 Identities=17% Similarity=0.218 Sum_probs=206.9
Q ss_pred HHHHHHHCCCCCCcHHHHHHHH----HHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFP----YVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQIT 107 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn----~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~a 107 (2355)
+.+.+...|| ++++.|.+.+. .+..++.+++.||||+|||++|+++++..+. .+.++||.+||++|..|+.
T Consensus 235 ~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----~~~~vvi~t~t~~Lq~Ql~ 309 (850)
T TIGR01407 235 FSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----TEKPVVISTNTKVLQSQLL 309 (850)
T ss_pred HHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----CCCeEEEEeCcHHHHHHHH
Confidence 6777777888 58999998766 4445788999999999999999999987654 3568999999999999986
Q ss_pred H-HHHHHhcccC-CcEEEEEECCccc----------------------------------------c------C------
Q psy8497 108 D-VVRSVGAHVK-NLHVDYFIGGTQV----------------------------------------E------R------ 133 (2355)
Q Consensus 108 n-wLREFgk~AP-gLrVVvytGGkq~----------------------------------------r------k------ 133 (2355)
. .+..+...++ .++++++.|.... - .
T Consensus 310 ~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i 389 (850)
T TIGR01407 310 EKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQV 389 (850)
T ss_pred HHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHh
Confidence 5 4544433321 3555555543211 0 0
Q ss_pred -----------------------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-------h-----
Q psy8497 134 -----------------------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-------F----- 178 (2355)
Q Consensus 134 -----------------------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-------F----- 178 (2355)
....++||||++..|+..+.....-+....+|||||||+|.+.. +
T Consensus 390 ~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~ 469 (850)
T TIGR01407 390 RHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYADI 469 (850)
T ss_pred hcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHHHH
Confidence 00016899999998876654332234556799999999975310 0
Q ss_pred H---HHH-------------------------------------------------------------HHHHHh------
Q psy8497 179 V---EDI-------------------------------------------------------------TWIYSQ------ 188 (2355)
Q Consensus 179 ~---SrL-------------------------------------------------------------eeILs~------ 188 (2355)
. ..+ ...+..
T Consensus 470 ~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 549 (850)
T TIGR01407 470 KYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDFK 549 (850)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 0 000 000000
Q ss_pred -----C-------------------------------------CCCceEEEEEeccChh-HHHHHHHhccCC-ee-eccC
Q psy8497 189 -----L-------------------------------------PPMKQMLVVSATYSHD-NLATLQKYMVDP-LL-IRPE 223 (2355)
Q Consensus 189 -----L-------------------------------------ppnrQILLLSATLS~E-ILElLkKfLrdP-vI-IrVe 223 (2355)
+ +....+|++|||+... ....+...+.-. .. ....
T Consensus 550 ~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~ 629 (850)
T TIGR01407 550 NIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIE 629 (850)
T ss_pred HHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceec
Confidence 0 0112568889998732 233343333211 11 1111
Q ss_pred CCccccccceEEEEeccCCCC-C----cchhh-hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC--CccEEe
Q psy8497 224 DATRPLLGVKQLVALIPECKN-P----SLRYV-DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN--FGAEYL 295 (2355)
Q Consensus 224 see~~~seVrQvVvqVpe~kn-~----sLt~l-sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG--IKVarL 295 (2355)
..+.....+....++.... . ...+. .....|..++... .+++|||+++.++++.++..|.... ..+..+
T Consensus 630 --~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~-~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l 706 (850)
T TIGR01407 630 --PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAIT-SPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL 706 (850)
T ss_pred --CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHhhhccccCceEE
Confidence 1111112233333332211 0 11122 2224444554443 4699999999999999999997521 123344
Q ss_pred eCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc--EEEEecCCCC-H--------------------------
Q psy8497 296 SGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD--LVINLEIPHD-A-------------------------- 346 (2355)
Q Consensus 296 HGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD--TVIIyDSP~S-P-------------------------- 346 (2355)
..+.. ..|..+++.|+.++..|||+|..+.+|||+|... +||+...|+. |
T Consensus 707 ~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP 785 (850)
T TIGR01407 707 AQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLP 785 (850)
T ss_pred ecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHH
Confidence 44443 5789999999999999999999999999999965 5778888862 1
Q ss_pred ---hHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 347 ---ATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 347 ---qSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
..+.|++||+-|...+..++++++..
T Consensus 786 ~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 786 MAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHHHHHHHhhccccccCCceEEEEEEccc
Confidence 23579999999977666666666543
No 124
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.77 E-value=2.7e-16 Score=197.67 Aligned_cols=138 Identities=20% Similarity=0.296 Sum_probs=119.9
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC--
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI-- 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS-- 342 (2355)
..++||||.++..++.|+..|...|+.+..+||+++..+|..++..|+.|.+.|||||.++++|+|+|.+++||++|.
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~ei 525 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADK 525 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcc
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ---CCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH-----HHhhccccccccCCCccchhhhh
Q psy8497 343 ---PHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL-----MGEINLDHAFNVGLVPDNLTGDQ 403 (2355)
Q Consensus 343 ---P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL-----rReLKLKLaLe~eIVPkgLlKeq 403 (2355)
|.++..|+||+||+||. ..|.+|+|+...+..+.+.+ ++.....+.....++|+.+.+..
T Consensus 526 fG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 593 (652)
T PRK05298 526 EGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKKKI 593 (652)
T ss_pred cccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHH
Confidence 56999999999999994 78999999986655543333 33445556667778888776654
No 125
>KOG0949|consensus
Probab=99.76 E-value=2.5e-17 Score=205.64 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=119.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.|-.||.+.+..+-++..++|+|||.+|||.+...++-..|.. .+.+-||+++|+++|+.|+...+...+....-.+.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe--sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE--SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh--cCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 5678999999999999999999999999999888777766664 45678999999999999998877765533222333
Q ss_pred EEEECCccccCCCC--CCcEEEECHHHHHHHHHh---hcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 123 DYFIGGTQVERPKR--PVQIVVGSPGRIKQMIKL---KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 123 VvytGGkq~rkqir--q~DILVTTPErLLDLLdr---r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
+.+.|.-.-+-.+. .++|+||-|+.+..++.. .......+.+||+||+|.+.+..-.-.++.++... .+.+|+
T Consensus 589 ~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~ 666 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLV 666 (1330)
T ss_pred hhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCeeE
Confidence 44444433332233 489999999999877765 23345788999999999988665444455555544 478999
Q ss_pred EEeccChhH
Q psy8497 198 VSATYSHDN 206 (2355)
Q Consensus 198 LSATLS~EI 206 (2355)
+|||..+..
T Consensus 667 LSATigN~~ 675 (1330)
T KOG0949|consen 667 LSATIGNPN 675 (1330)
T ss_pred EecccCCHH
Confidence 999988543
No 126
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.76 E-value=1e-16 Score=202.20 Aligned_cols=285 Identities=15% Similarity=0.237 Sum_probs=194.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
+-+.+.+.-...|+..|.-....+++|++.-|.||||.||| .+.+.+..++. ..+++++||+||..|+.|+.+.+.
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKT-Tfg~~~sl~~a---~kgkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKT-TFGLLMSLYLA---KKGKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchh-HHHHHHHHHHH---hcCCeEEEEecCHHHHHHHHHHHH
Confidence 55556665434999999999999999999999999999999 55544444444 356899999999999999999999
Q ss_pred HHhcccCCcEEEE-EECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-----
Q psy8497 112 SVGAHVKNLHVDY-FIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG----- 177 (2355)
Q Consensus 112 EFgk~APgLrVVv-ytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G----- 177 (2355)
+|......+.+.+ |++.-.... ....++|+|||..-|...+. .+..-++++|+||.++.++-.+
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e--~L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE--ELSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH--HhcccCCCEEEEccHHHHHhccccHHH
Confidence 9976653344333 555522221 12249999999887755443 2333578899999999765221
Q ss_pred ------hHH-----------------------HHHHHHHh--------CCCCceEEEEEeccChhHH--HHHHHhccCCe
Q psy8497 178 ------FVE-----------------------DITWIYSQ--------LPPMKQMLVVSATYSHDNL--ATLQKYMVDPL 218 (2355)
Q Consensus 178 ------F~S-----------------------rLeeILs~--------LppnrQILLLSATLS~EIL--ElLkKfLrdPv 218 (2355)
|.. .+..++.. -....++|+.|||..+.-. .++..+|.
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg--- 301 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG--- 301 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---
Confidence 111 11111111 1234588999999765432 22222222
Q ss_pred eeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcc---cccHHHHHHHHHhcCCccEEe
Q psy8497 219 LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNY---QLRPEVICENLANANFGAEYL 295 (2355)
Q Consensus 219 IIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQT---RKmAEiLADyLrErGIKVarL 295 (2355)
+.+........++...+... .....++.++..... -.|||++. ++.++.|+++|+..|+++..+
T Consensus 302 -FevG~~~~~LRNIvD~y~~~-----------~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~ 368 (1187)
T COG1110 302 -FEVGSGGEGLRNIVDIYVES-----------ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELI 368 (1187)
T ss_pred -CccCccchhhhheeeeeccC-----------ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEe
Confidence 12222222222233322221 234455555555533 68999999 999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhCCCccEEEEe----cccccccCCCC-ccEEEEecCC
Q psy8497 296 SGAQDQKARLASLDSFKRGKVRILVTT----DLAARGIDAAN-VDLVINLEIP 343 (2355)
Q Consensus 296 HGgMSqEERqeILErFRSGEIdVLVST----SALGEGLDLPa-VDTVIIyDSP 343 (2355)
|+. ....++.|..|+++|||++ .++.+|||||. +..+|+++.|
T Consensus 369 ~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 369 HAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 973 3778999999999999987 57899999998 6889998888
No 127
>KOG0922|consensus
Probab=99.75 E-value=1.2e-16 Score=196.37 Aligned_cols=311 Identities=20% Similarity=0.216 Sum_probs=211.3
Q ss_pred cHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE
Q psy8497 45 SPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124 (2355)
Q Consensus 45 RPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv 124 (2355)
..+-.+.+..+..++-+||.++||+|||.+.-..+++.-. ...+.+.+.-|.|..|..++..+.+-..-..+-.|+.
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~---~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGF---ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccc---ccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 3444556676777788999999999999553333322212 2344588888999999888877766433322444544
Q ss_pred EECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccC-hHHHHHHHHHhCCCCceEEEEEecc
Q psy8497 125 FIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTG-FVEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 125 ytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~G-F~SrLeeILs~LppnrQILLLSATL 202 (2355)
.+--.... .....|.++|-++|+..+..+. .+.++++|||||||. -+... ....+..++.. .+..++|++|||+
T Consensus 130 ~IRFed~t--s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIimSATl 205 (674)
T KOG0922|consen 130 TIRFEDST--SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLIIMSATL 205 (674)
T ss_pred EEEecccC--CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEEEeeee
Confidence 33222211 2246799999999887665554 378999999999994 22222 22333333333 3467999999999
Q ss_pred ChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhh-hHHHHHHHHHhcCCCCeEEEEEcccccHHHH
Q psy8497 203 SHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYV-DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVI 281 (2355)
Q Consensus 203 S~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~l-sKkeaLLqLLerl~kgRVLVFSQTRKmAEiL 281 (2355)
..+ .+..|+....++.+..... +++..+.. .. ...+. .....+.++....+.+-+|||...++..+.+
T Consensus 206 da~---kfS~yF~~a~i~~i~GR~f---PVei~y~~--~p---~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 206 DAE---KFSEYFNNAPILTIPGRTF---PVEILYLK--EP---TADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred cHH---HHHHHhcCCceEeecCCCC---ceeEEecc--CC---chhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 743 4445555544444444332 23333322 21 11222 2234555666667778999999999999999
Q ss_pred HHHHHhc----CC----ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEE--------EecC---
Q psy8497 282 CENLANA----NF----GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI--------NLEI--- 342 (2355)
Q Consensus 282 ADyLrEr----GI----KVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVI--------IyDS--- 342 (2355)
++.|.+. .- -+..+||.|+.+++.++...--.|.-+|+|+|++.+..|.|+.+..|| .|++
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence 9988875 11 246799999999999988777678889999999999999999999999 3333
Q ss_pred -------CCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 343 -------PHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 343 -------P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|.|..+-.||.|||||. .+|+|+.+++..+.
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHH
Confidence 34788899999999995 68999999976554
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.75 E-value=3.3e-17 Score=166.39 Aligned_cols=184 Identities=28% Similarity=0.490 Sum_probs=143.3
Q ss_pred HCCCCCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
..++.+|+++|.+++..++.. +.++|.++||+|||.+++.+++..+.. ....++||++|+..++.|+...+..+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR--GKGKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc--cCCCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 356789999999999999998 999999999999999888888877663 22468999999999999999999988655
Q ss_pred cCCcEEEEEECCcccc---CCCCC-CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCC
Q psy8497 117 VKNLHVDYFIGGTQVE---RPKRP-VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192 (2355)
Q Consensus 117 APgLrVVvytGGkq~r---kqirq-~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppn 192 (2355)
........+.+..... ..... .+|+++|++.+...+....+....+++|||||+|.+....+...+..++..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~ 160 (201)
T smart00487 81 LGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKN 160 (201)
T ss_pred CCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCcc
Confidence 4223333333332111 11112 3899999999998888766677888999999999998756778888888888788
Q ss_pred ceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 193 KQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 193 rQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
.+++++|||+..........++.....+...
T Consensus 161 ~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 161 VQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred ceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 9999999999987777777777655554444
No 129
>KOG4439|consensus
Probab=99.75 E-value=2.1e-17 Score=202.11 Aligned_cols=113 Identities=16% Similarity=0.235 Sum_probs=99.3
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC--CCccE-EEEecccccccCCCCccEEEEe
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR--GKVRI-LVTTDLAARGIDAANVDLVINL 340 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS--GEIdV-LVSTSALGEGLDLPaVDTVIIy 340 (2355)
...+++|.++...++..+...|...|+.+..++|.+...+|+.+++.|+. |..+| ||+-.+++.||||-.++++|++
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 34689999999999999999999999999999999999999999999994 54555 6677999999999999999999
Q ss_pred cCCCCHhHHHHHhhccCCCCCccEEEEEE--cccCHHH
Q psy8497 341 EIPHDAATYLHRMGRAGRYGTRGLVITIV--SAESLVK 376 (2355)
Q Consensus 341 DSP~SPqSYIQRIGRAGRiGQkGkVIVLV--SsdDVEe 376 (2355)
|+.|||+--.|+..|+.|+||+..|+++. ...+++.
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEq 862 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQ 862 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHH
Confidence 99999999999999999999877766654 4455544
No 130
>KOG0920|consensus
Probab=99.74 E-value=1.8e-16 Score=202.07 Aligned_cols=321 Identities=17% Similarity=0.185 Sum_probs=225.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
..+.++.+.++.+.+.+-+||.++||+|||.+....+|....... ...++++--|.+--|.-+++++..--.+..+-.|
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 447788899999999999999999999999888888887766433 5666777789998888888887765444445444
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
..-.+-...... ...+++||.+.|+..+.. .-.+..+..|||||+|. -.+..|.-.+.+.+-...+..++|+||||
T Consensus 252 GYqvrl~~~~s~--~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT 328 (924)
T KOG0920|consen 252 GYQVRLESKRSR--ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSAT 328 (924)
T ss_pred eEEEeeecccCC--ceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeee
Confidence 444443333222 267999999999888866 33578889999999994 34555555555555556688999999999
Q ss_pred cChhHHHHHHHhccCCeeeccCCCcccccc----------------ceEEEEeccCCC----------CCcchhhhHHHH
Q psy8497 202 YSHDNLATLQKYMVDPLLIRPEDATRPLLG----------------VKQLVALIPECK----------NPSLRYVDEEKK 255 (2355)
Q Consensus 202 LS~EILElLkKfLrdPvIIrVesee~~~se----------------VrQvVvqVpe~k----------n~sLt~lsKkea 255 (2355)
+.. +.+..|+...-++.+.....+... ..+. ..+... ... ........
T Consensus 329 ~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-id~~Li~~ 402 (924)
T KOG0920|consen 329 LDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR--SGPERSQLRLARLKLWEPE-IDYDLIED 402 (924)
T ss_pred cch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc--cccccCccccccchhcccc-ccHHHHHH
Confidence 873 334444444434433322211100 0000 000000 000 11223333
Q ss_pred HHHHH-hcCCCCeEEEEEcccccHHHHHHHHHhc-------CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 256 LVQLL-SQTPFNQCVIFSNYQLRPEVICENLANA-------NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 256 LLqLL-erl~kgRVLVFSQTRKmAEiLADyLrEr-------GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
|+..+ .....+.+|||.+....+..+.+.|... .+-+..+|+.|+..+++.+....-.|.-+||++|++++.
T Consensus 403 li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAET 482 (924)
T KOG0920|consen 403 LIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAET 482 (924)
T ss_pred HHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhh
Confidence 33333 3444679999999999999999999742 256788999999999999988888899999999999999
Q ss_pred ccCCCCccEEE--------EecCCC----------CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 328 GIDAANVDLVI--------NLEIPH----------DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 328 GLDLPaVDTVI--------IyDSP~----------SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.|-|++|-.|| .||+-. +..+-.||.||||| -++|.|+.++.....
T Consensus 483 SITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR-v~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 483 SITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR-VRPGICYHLYTRSRY 546 (924)
T ss_pred cccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC-ccCCeeEEeechhhh
Confidence 99999999999 444432 56677899999999 589999999875433
No 131
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.74 E-value=8.7e-17 Score=200.91 Aligned_cols=302 Identities=19% Similarity=0.185 Sum_probs=193.7
Q ss_pred CCCcHHHHHHHHHHHc----C-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 42 VKESPIQMAAFPYVLN----G-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----G-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
..++.||..||..+.. + +.++|++.||+|||.+++. |+.+|++ ....++||+|+-+.+|+.|....+..+...
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIK-SGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHh-cchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 3789999999988763 3 3499999999999998874 4445552 356789999999999999999998887533
Q ss_pred cCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhh-----cccCcCceEEEecccchhcccChHHHHHHHHHhCCC
Q psy8497 117 VKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLK-----YLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191 (2355)
Q Consensus 117 APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr-----~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp 191 (2355)
-....+..+.... ..+.|.|+|+++|....... .+....+++||||||||-. ++....|+..+..
T Consensus 242 ---~~~~n~i~~~~~~---~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I~dYFdA 311 (875)
T COG4096 242 ---GTKMNKIEDKKGD---TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSILDYFDA 311 (875)
T ss_pred ---ccceeeeecccCC---cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHHHHHHHHH
Confidence 3333333332221 14789999999998776553 3445669999999999844 3444455555432
Q ss_pred CceEEEEEeccChhHHHHHHHh-------------------ccCCeeeccCC----Cccccccc-------eEEE-----
Q psy8497 192 MKQMLVVSATYSHDNLATLQKY-------------------MVDPLLIRPED----ATRPLLGV-------KQLV----- 236 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKf-------------------LrdPvIIrVes----ee~~~seV-------rQvV----- 236 (2355)
. ++++||||........-.+ |..+-.+.+.. ........ ...+
T Consensus 312 ~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~ 389 (875)
T COG4096 312 A--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQ 389 (875)
T ss_pred H--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccc
Confidence 2 2445999876332222222 22211111110 00000000 0000
Q ss_pred --EeccCCCCCcc--hhhhHHHHHHHHHhc--CC--CCeEEEEEcccccHHHHHHHHHhcC-----CccEEeeCCCCHHH
Q psy8497 237 --ALIPECKNPSL--RYVDEEKKLVQLLSQ--TP--FNQCVIFSNYQLRPEVICENLANAN-----FGAEYLSGAQDQKA 303 (2355)
Q Consensus 237 --vqVpe~kn~sL--t~lsKkeaLLqLLer--l~--kgRVLVFSQTRKmAEiLADyLrErG-----IKVarLHGgMSqEE 303 (2355)
...+....... ........|...|.. .. ..++||||.+..+|+.+...|.... --+..|.|.. ++
T Consensus 390 ~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~ 467 (875)
T COG4096 390 NFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQ 467 (875)
T ss_pred cccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hh
Confidence 00000000000 001122445555655 22 4699999999999999999998752 2245566653 33
Q ss_pred HHHHHHHHhC--CCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC
Q psy8497 304 RLASLDSFKR--GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY 359 (2355)
Q Consensus 304 RqeILErFRS--GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi 359 (2355)
-+..|+.|.. ..-.|.|+.+++..|||+|.|-+++++-.-.|..-|.||+||+-|.
T Consensus 468 ~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 468 AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 3455666664 3446888999999999999999999999999999999999999995
No 132
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.1e-15 Score=195.19 Aligned_cols=124 Identities=20% Similarity=0.215 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccc
Q psy8497 251 DEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARG 328 (2355)
Q Consensus 251 sKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEG 328 (2355)
.+...|...+... ...+|||||.++..++.|...|...++.+..||+ .+.+|...|..|..+...|+|||+++++|
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 4556676666433 4569999999999999999999999999999997 68899999999999999999999999999
Q ss_pred cCCC---Ccc-----EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 329 IDAA---NVD-----LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 329 LDLP---aVD-----TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
+||+ .|. +||.+..|.+...|.|++||+||.|.+|.++.|++..+.-+
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 9999 443 34888888999999999999999999999999998766544
No 133
>COG4889 Predicted helicase [General function prediction only]
Probab=99.66 E-value=3.1e-16 Score=193.71 Aligned_cols=343 Identities=17% Similarity=0.218 Sum_probs=204.8
Q ss_pred ccccCcccCCcHHHHHHHHHCCCCCCcHHHHHHHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEE
Q psy8497 19 DVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTI 94 (2355)
Q Consensus 19 DkV~SFEeLlLkpLLK~Lqa~GF~eLRPYQeEALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVL 94 (2355)
+....|+.+.+.++...|.-..-..|+|+|+.|+...+++ ...-|.+.||+|||++.+ -|.+.|. ..++|
T Consensus 137 es~IDW~~f~p~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala-----~~~iL 210 (1518)
T COG4889 137 ESPIDWDIFDPTELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA-----AARIL 210 (1518)
T ss_pred cCCCChhhcCccccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh-----hhheE
Confidence 4557888888866777777777779999999999999875 236677889999998876 4555555 37899
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCC-----------------------------CCcEEEECH
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-----------------------------PVQIVVGSP 145 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqir-----------------------------q~DILVTTP 145 (2355)
+|||+.+|..|..+....- ... .++...+..+........ .--||++||
T Consensus 211 ~LvPSIsLLsQTlrew~~~-~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTY 288 (1518)
T COG4889 211 FLVPSISLLSQTLREWTAQ-KEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTY 288 (1518)
T ss_pred eecchHHHHHHHHHHHhhc-cCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcc
Confidence 9999999988865544332 122 455555555543322111 134999999
Q ss_pred HHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC-----CCCceEEEEEeccChhHHHHHHHhcc-CCee
Q psy8497 146 GRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL-----PPMKQMLVVSATYSHDNLATLQKYMV-DPLL 219 (2355)
Q Consensus 146 ErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L-----ppnrQILLLSATLS~EILElLkKfLr-dPvI 219 (2355)
+.+...-......+..+++||+|||||.....+...-...+..+ -...+.+.|||||.-.....-.+.-. ...+
T Consensus 289 QSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l 368 (1518)
T COG4889 289 QSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL 368 (1518)
T ss_pred cchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcccee
Confidence 99887777777778999999999999964221100000000000 01234578899876221111111000 0001
Q ss_pred eccCCC-----------------ccccccceEEEEeccCCC------------C--CcchhhhHH----HHHHHHHh---
Q psy8497 220 IRPEDA-----------------TRPLLGVKQLVALIPECK------------N--PSLRYVDEE----KKLVQLLS--- 261 (2355)
Q Consensus 220 IrVese-----------------e~~~seVrQvVvqVpe~k------------n--~sLt~lsKk----eaLLqLLe--- 261 (2355)
.....+ ....-..+.++..+.+.. . ..+....+. ..|..--.
T Consensus 369 ~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n 448 (1518)
T COG4889 369 SSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDN 448 (1518)
T ss_pred eccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccc
Confidence 100000 000001111111111100 0 000000111 11111100
Q ss_pred ---c-----CCCCeEEEEEcccccHHHHHHHHHh-------------c--CCccEEeeCCCCHHHHHHHHHHHh---CCC
Q psy8497 262 ---Q-----TPFNQCVIFSNYQLRPEVICENLAN-------------A--NFGAEYLSGAQDQKARLASLDSFK---RGK 315 (2355)
Q Consensus 262 ---r-----l~kgRVLVFSQTRKmAEiLADyLrE-------------r--GIKVarLHGgMSqEERqeILErFR---SGE 315 (2355)
. .+..|+|-||.+++....+++.+.. . .+.+..++|.|...+|...+..-+ ..+
T Consensus 449 ~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~ne 528 (1518)
T COG4889 449 DLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNE 528 (1518)
T ss_pred cccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcch
Confidence 0 0114778899888877666665542 1 245666789999999966555432 467
Q ss_pred ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC--C-CccEEEEEE
Q psy8497 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY--G-TRGLVITIV 369 (2355)
Q Consensus 316 IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi--G-QkGkVIVLV 369 (2355)
++||--.+.+.+|||+|+.+-||++++-.+.-..+|++||+.|. | .-|.+|+=+
T Consensus 529 ckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 529 CKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred heeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 88998899999999999999999999999999999999999994 3 234444444
No 134
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=1.8e-14 Score=180.66 Aligned_cols=327 Identities=19% Similarity=0.226 Sum_probs=209.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+.-.|++|+ |..+.||.|||++++++++.... .+..+.||+|+..||.|-++|+..++.++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL----~G~~VhvvT~NdyLA~RDae~m~~ly~~L- 146 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL----QGRRVHVITVNDYLARRDAEWMGPLYEAL- 146 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH----cCCCeEEEcCCHHHHHHHHHHHHHHHHhc-
Confidence 565 89999999999998875 88999999999999988876554 47789999999999999999999999888
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHHH-HHHHh------hcccCcCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRIK-QMIKL------KYLNMDSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErLL-DLLdr------r~LdLSkIdLLIVDEAHRLk-N~------------ 176 (2355)
++.|.++.++.... ...-.++|+++|...|- ++|+. .....+.+.++||||++.++ +.
T Consensus 147 GLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~ 226 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTP 226 (764)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCc
Confidence 99999998875433 22334899999976432 22222 12234678899999999754 21
Q ss_pred --ChHHHHHHHHHhCCCC--------ceEEEEEec--------------cCh----hHHHHH----H-H-hcc-C-Ceee
Q psy8497 177 --GFVEDITWIYSQLPPM--------KQMLVVSAT--------------YSH----DNLATL----Q-K-YMV-D-PLLI 220 (2355)
Q Consensus 177 --GF~SrLeeILs~Lppn--------rQILLLSAT--------------LS~----EILElL----k-K-fLr-d-PvII 220 (2355)
..+..+..+...+... .+.+.+|.. ... .....+ . . ++. + .+++
T Consensus 227 ~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 306 (764)
T PRK12326 227 GEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIV 306 (764)
T ss_pred chhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 1333444445544332 122333320 000 000000 0 0 010 0 0010
Q ss_pred ------ccCCC-cc------------------------------------------------------ccccc----eEE
Q psy8497 221 ------RPEDA-TR------------------------------------------------------PLLGV----KQL 235 (2355)
Q Consensus 221 ------rVese-e~------------------------------------------------------~~seV----rQv 235 (2355)
.+... .. ....+ ..-
T Consensus 307 ~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~ 386 (764)
T PRK12326 307 RDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLG 386 (764)
T ss_pred ECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCc
Confidence 00000 00 00000 001
Q ss_pred EEeccCCC---------CCcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHH
Q psy8497 236 VALIPECK---------NPSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304 (2355)
Q Consensus 236 VvqVpe~k---------n~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEER 304 (2355)
+..+|..+ ..+.....+..++.+.+.. ..+.+|||.+.++...+.|...|.+.|++...|...-...|
T Consensus 387 Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E- 465 (764)
T PRK12326 387 VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE- 465 (764)
T ss_pred EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-
Confidence 12222111 1111122333333333321 24569999999999999999999999999999998754433
Q ss_pred HHHHHHHhCCC-ccEEEEecccccccCCCCc---------------cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEE
Q psy8497 305 LASLDSFKRGK-VRILVTTDLAARGIDAANV---------------DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITI 368 (2355)
Q Consensus 305 qeILErFRSGE-IdVLVSTSALGEGLDLPaV---------------DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVL 368 (2355)
..++.. .|. -.|.|||+++++|.||.-- =+||....+.|..-..|..|||||.|.+|.+..|
T Consensus 466 A~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 466 ARIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred HHHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 233322 443 3699999999999998632 2688888999999999999999999999999999
Q ss_pred EcccCHHH
Q psy8497 369 VSAESLVK 376 (2355)
Q Consensus 369 VSsdDVEe 376 (2355)
++-++.-+
T Consensus 544 lSleDdl~ 551 (764)
T PRK12326 544 VSLEDDVV 551 (764)
T ss_pred EEcchhHH
Confidence 87665443
No 135
>KOG0923|consensus
Probab=99.65 E-value=4.9e-15 Score=180.96 Aligned_cols=309 Identities=19% Similarity=0.263 Sum_probs=205.2
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh--cCCCCCeEEEEcccHHHHHHHHHHHHH-HhcccCC
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK--LPVQQPQTIILAPTREIAVQITDVVRS-VGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e--kr~qggRVLILVPTRALAqQ~anwLRE-Fgk~APg 119 (2355)
..++|-.+.|..+...+=+||.++||+|||.+ +.-. |.+ ....+.++-+.-|.+..|..+...+.+ ++-.+ +
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQ-iPQy---L~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL-G 339 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ-IPQY---LYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL-G 339 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCcccc-ccHH---HHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccc-c
Confidence 45777777888888788899999999999954 3222 222 122344477777999999888766654 43222 2
Q ss_pred cEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 120 LHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 120 LrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
-.|.+-+--..... ...-|-++|-++|+.-+.... .+..+.+|||||||. .+.....--+..-+..+.+...+|+.
T Consensus 340 ~eVGYsIRFEdcTS--ekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIs 416 (902)
T KOG0923|consen 340 HEVGYSIRFEDCTS--EKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLIS 416 (902)
T ss_pred cccceEEEeccccC--cceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEee
Confidence 22222111111111 124477999999877665444 588999999999994 33333222222333344578899999
Q ss_pred EeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhh-HHHHHHHHHhcCCCCeEEEEEccccc
Q psy8497 199 SATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD-EEKKLVQLLSQTPFNQCVIFSNYQLR 277 (2355)
Q Consensus 199 SATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ls-KkeaLLqLLerl~kgRVLVFSQTRKm 277 (2355)
|||+..+ .+..|+.+.-++.++....+ +..++...|+. .++. ....++++....+.+-+|||......
T Consensus 417 SAT~DAe---kFS~fFDdapIF~iPGRRyP---Vdi~Yt~~PEA-----dYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 417 SATMDAE---KFSAFFDDAPIFRIPGRRYP---VDIFYTKAPEA-----DYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred ccccCHH---HHHHhccCCcEEeccCcccc---eeeecccCCch-----hHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 9999743 34555665555555544332 22333333322 2222 22344444444556789999999988
Q ss_pred HHHHHHHHHhc----C-----CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE---------
Q psy8497 278 PEVICENLANA----N-----FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN--------- 339 (2355)
Q Consensus 278 AEiLADyLrEr----G-----IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII--------- 339 (2355)
.+.+...|..+ | +-+..||+.++.+.+.+|++---.|.-+|++||++++..|.|+.+..||-
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 87777766653 2 45788999999999999987766788899999999999999999999981
Q ss_pred ---------ecCCCCHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 340 ---------LEIPHDAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 340 ---------yDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
.-.|.|..+-.||+|||||. .+|+|+.+++.
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRt-gPGKCfRLYt~ 605 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRT-GPGKCFRLYTA 605 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCC-CCCceEEeech
Confidence 12234677889999999996 47999999864
No 136
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.65 E-value=3.2e-14 Score=183.04 Aligned_cols=314 Identities=16% Similarity=0.239 Sum_probs=191.9
Q ss_pred CCCCCCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHH-HHHHHH
Q psy8497 39 NGFVKESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQIT-DVVRSV 113 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~a-nwLREF 113 (2355)
.|| +.|+-|.+....+. .+..+|+.|+||+|||++|+++++... .+.++||++||++|+.|+. ..+..+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 355 89999999666554 356799999999999999999987643 3578999999999999994 666666
Q ss_pred hcccCCcEEEEEECCcccc----------------------------------------------C--------------
Q psy8497 114 GAHVKNLHVDYFIGGTQVE----------------------------------------------R-------------- 133 (2355)
Q Consensus 114 gk~APgLrVVvytGGkq~r----------------------------------------------k-------------- 133 (2355)
.... ++.+.++.|+...- .
T Consensus 316 ~~~~-~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 316 QEVF-HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHhc-CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 5544 55555555432100 0
Q ss_pred ---------------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-----h-------HH------
Q psy8497 134 ---------------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-----F-------VE------ 180 (2355)
Q Consensus 134 ---------------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-----F-------~S------ 180 (2355)
....++|||+....|+..+.... .+...++|||||||+|.+.. . ..
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKAL 473 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHH
Confidence 00016899999998776554332 25678999999999975311 0 00
Q ss_pred ----------------------------------------HH----HHH--------HHhC-------------------
Q psy8497 181 ----------------------------------------DI----TWI--------YSQL------------------- 189 (2355)
Q Consensus 181 ----------------------------------------rL----eeI--------Ls~L------------------- 189 (2355)
.+ ..+ ...+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~ 553 (820)
T PRK07246 474 SGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRV 553 (820)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcce
Confidence 00 000 0000
Q ss_pred -----------------CCCceEEEEEeccCh-hHHHHHHHhcc-C-CeeeccCCCccccccceEEEEecc-CCCCC---
Q psy8497 190 -----------------PPMKQMLVVSATYSH-DNLATLQKYMV-D-PLLIRPEDATRPLLGVKQLVALIP-ECKNP--- 245 (2355)
Q Consensus 190 -----------------ppnrQILLLSATLS~-EILElLkKfLr-d-PvIIrVesee~~~seVrQvVvqVp-e~kn~--- 245 (2355)
+....+|++|||+.. .... +...+. . .....+. ... ..+....++ .....
T Consensus 554 ~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~--~~~~~~~i~~~~p~~~~~ 627 (820)
T PRK07246 554 TYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDK--KQDQLVVVDQDMPLVTET 627 (820)
T ss_pred eEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CCh--HHccEEEeCCCCCCCCCC
Confidence 001245778888752 1112 222221 1 1111111 111 122222222 11111
Q ss_pred -cchhhh-HHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec
Q psy8497 246 -SLRYVD-EEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323 (2355)
Q Consensus 246 -sLt~ls-KkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS 323 (2355)
...+.. ....+..++ ...+++||++.+.++++.+++.|....+.+ ...|... .+..++++|+.+.-.||++|.
T Consensus 628 ~~~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 628 SDEVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred ChHHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecc
Confidence 112222 223344444 345799999999999999999997654433 4444221 356789999998888999999
Q ss_pred ccccccCCC--CccEEEEecCCCC-H-----------------------------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 324 LAARGIDAA--NVDLVINLEIPHD-A-----------------------------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 324 ALGEGLDLP--aVDTVIIyDSP~S-P-----------------------------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
...+|||+| ...+||+...|+. | ..+.|.+||.-|.-.+..+|++++.
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 999999997 4666788888862 1 2357999999997655555555554
No 137
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=1.2e-14 Score=185.47 Aligned_cols=327 Identities=16% Similarity=0.172 Sum_probs=205.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+--.|.+|+ |..+.||.|||++++++++.... .+..|.||+|+..||.|-.+|+..++.++
T Consensus 79 lGm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al----~G~~VhvvT~ndyLA~RD~e~m~~l~~~l- 150 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNAL----SGKGVHVVTVNDYLARRDANWMRPLYEFL- 150 (913)
T ss_pred hCC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHHHhccc-
Confidence 564 88889988777776554 99999999999999988875544 37789999999999999999999999988
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHH-HHHHHhhc------ccCcCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRI-KQMIKLKY------LNMDSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErL-LDLLdrr~------LdLSkIdLLIVDEAHRLk-N~------------ 176 (2355)
++.|.+++++.... .....++|+++|..-| .++|.... .....+.++||||+|.++ +.
T Consensus 151 Gl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~ 230 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAE 230 (913)
T ss_pred CCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCc
Confidence 99999998875432 2233389999998765 23333221 123778899999999864 21
Q ss_pred ---ChHHHHHHHHHhCCC-------------------CceEEEEEeccC----------------hhH-----HHH----
Q psy8497 177 ---GFVEDITWIYSQLPP-------------------MKQMLVVSATYS----------------HDN-----LAT---- 209 (2355)
Q Consensus 177 ---GF~SrLeeILs~Lpp-------------------nrQILLLSATLS----------------~EI-----LEl---- 209 (2355)
..+..+..++..|.. ..+.+.||-.-. ... ...
T Consensus 231 ~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i 310 (913)
T PRK13103 231 DSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHV 310 (913)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHH
Confidence 123333333333311 111222222100 000 000
Q ss_pred ---HHH-h-c-cC-Ceee------ccCC-Cccc-----------------------------------------------
Q psy8497 210 ---LQK-Y-M-VD-PLLI------RPED-ATRP----------------------------------------------- 228 (2355)
Q Consensus 210 ---LkK-f-L-rd-PvII------rVes-ee~~----------------------------------------------- 228 (2355)
+.. + + .+ .+++ .+.. ....
T Consensus 311 ~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGM 390 (913)
T PRK13103 311 YAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGM 390 (913)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccC
Confidence 110 0 0 00 0110 0000 0000
Q ss_pred -------cccc----eEEEEeccCCC---------CCcchhhhHHHHHHHHHh--cCCCCeEEEEEcccccHHHHHHHHH
Q psy8497 229 -------LLGV----KQLVALIPECK---------NPSLRYVDEEKKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLA 286 (2355)
Q Consensus 229 -------~seV----rQvVvqVpe~k---------n~sLt~lsKkeaLLqLLe--rl~kgRVLVFSQTRKmAEiLADyLr 286 (2355)
...+ ..-+..+|..+ ..+.+...+..++.+.+. ...+.+|||-+.++...+.|...|.
T Consensus 391 TGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~ 470 (913)
T PRK13103 391 TGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLK 470 (913)
T ss_pred CCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH
Confidence 0000 01122222111 011122233344433332 2235699999999999999999999
Q ss_pred hcCCccEEeeCCCCHHHHHHHHHHHhCCC-ccEEEEecccccccCCC---------------------------------
Q psy8497 287 NANFGAEYLSGAQDQKARLASLDSFKRGK-VRILVTTDLAARGIDAA--------------------------------- 332 (2355)
Q Consensus 287 ErGIKVarLHGgMSqEERqeILErFRSGE-IdVLVSTSALGEGLDLP--------------------------------- 332 (2355)
..++...+|.......|-..+ . ..|. -.|.|||+++|+|-||.
T Consensus 471 ~~gi~h~VLNAk~~~~EA~II-a--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 547 (913)
T PRK13103 471 KEGIEHKVLNAKYHEKEAEII-A--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQ 547 (913)
T ss_pred HcCCcHHHhccccchhHHHHH-H--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHH
Confidence 999998888876543333332 2 3453 46999999999999984
Q ss_pred ----CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 333 ----NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 333 ----aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
.==+||....+-|..-..|..|||||.|.+|.+..|++-++.-+
T Consensus 548 V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 548 VIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 11268888899999999999999999999999999997765544
No 138
>KOG0924|consensus
Probab=99.64 E-value=7.5e-15 Score=179.27 Aligned_cols=312 Identities=18% Similarity=0.229 Sum_probs=201.2
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHh-cCCCCCeEEEEcccHHHHHHHHHHHHH-HhcccC
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-LPVQQPQTIILAPTREIAVQITDVVRS-VGAHVK 118 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~e-kr~qggRVLILVPTRALAqQ~anwLRE-Fgk~AP 118 (2355)
+......+.+.+..|..++-+||+++||+|||.+... +|.+ .-...+-+-+.-|.++.|.-++..+.+ +...+
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~Q----yL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l- 428 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQ----YLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTL- 428 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHH----HHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcc-
Confidence 3455677888888888888899999999999954322 2222 123445566666999999888877765 43222
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcccChHHHHHHHHHhCCCCceEEE
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN~GF~SrLeeILs~LppnrQILL 197 (2355)
+-.|.+.+--..... ...-|-++|-+.|+.-..... .+..+.+||+||||. -++....--+.+.+-......++|.
T Consensus 429 G~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred ccccceEEEeeecCC--CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEE
Confidence 333333222211111 224588899888765443332 367889999999994 4444433333333333445789999
Q ss_pred EEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhh-HHHHHHHHHhcCCCCeEEEEEcccc
Q psy8497 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD-EEKKLVQLLSQTPFNQCVIFSNYQL 276 (2355)
Q Consensus 198 LSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ls-KkeaLLqLLerl~kgRVLVFSQTRK 276 (2355)
+|||+.. +.+..|+.+.-.+.++....+ +..++...+ ...|+. .....+++-.....+-+|||...+.
T Consensus 506 tSATm~a---~kf~nfFgn~p~f~IpGRTyP---V~~~~~k~p-----~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 506 TSATMDA---QKFSNFFGNCPQFTIPGRTYP---VEIMYTKTP-----VEDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred eeccccH---HHHHHHhCCCceeeecCCccc---eEEEeccCc-----hHHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 9999873 334444443333333332222 222222111 111221 1233344444445578999999888
Q ss_pred cHHHHHHHHHh----c------CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEe------
Q psy8497 277 RPEVICENLAN----A------NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINL------ 340 (2355)
Q Consensus 277 mAEiLADyLrE----r------GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIy------ 340 (2355)
.++-.+..+.. . ++.+..|++.|+..-+.++++.--.|.-+++|||++++..|.+|.+.+||-.
T Consensus 575 diE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 575 DIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred chhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 77655555443 2 5789999999999999888877777888999999999999999999999922
Q ss_pred --c----------CCCCHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 341 --E----------IPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 341 --D----------SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
+ .|.|..+--||.|||||. .+|.|+.+++..
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 2 244777888999999995 578999888654
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.63 E-value=2e-15 Score=147.80 Aligned_cols=117 Identities=34% Similarity=0.582 Sum_probs=105.9
Q ss_pred HHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccccc
Q psy8497 252 EEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGI 329 (2355)
Q Consensus 252 KkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGL 329 (2355)
+...+..++... ...++|||+++...++.++++|...+..+.++||+++..+|..+++.|+++...|||+|.++++|+
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~ 92 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGI 92 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCc
Confidence 344455555544 357999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEE
Q psy8497 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITI 368 (2355)
Q Consensus 330 DLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVL 368 (2355)
|+|.+++||+++.++++..++|++||++|.|+.+.+++|
T Consensus 93 d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 93 DLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred ChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999998877654
No 140
>KOG0926|consensus
Probab=99.62 E-value=1.4e-14 Score=178.93 Aligned_cols=305 Identities=20% Similarity=0.280 Sum_probs=190.2
Q ss_pred HHHHHcCCcEEEEccCCchHHHHHHHHHHHHH-H--hcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEE--E
Q psy8497 52 FPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL-I--KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYF--I 126 (2355)
Q Consensus 52 Ln~LLSGRNVILAAPTGSGKTLVALIAILerL-~--ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvy--t 126 (2355)
+..|..+--+|||++||+|||.+ +.-+|... . +.....+-+-|.-|.+..|.-+...+..-...+ +-.|.+. +
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTTQ-vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsYqIRf 342 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTTQ-VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSYQIRF 342 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCcccc-chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeEEEEe
Confidence 33344444599999999999954 33332211 1 111224567788899988877766655432222 2222221 1
Q ss_pred CCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh-ccc----ChHHHHHHHHHhCCC------CceE
Q psy8497 127 GGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL-INT----GFVEDITWIYSQLPP------MKQM 195 (2355)
Q Consensus 127 GGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL-kN~----GF~SrLeeILs~Lpp------nrQI 195 (2355)
.+. ......|.++|-+.|+.-+..+++ +..+.+|||||||.- ++. |..+++..+...+.. ..++
T Consensus 343 d~t----i~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKL 417 (1172)
T KOG0926|consen 343 DGT----IGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKL 417 (1172)
T ss_pred ccc----cCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeE
Confidence 111 122367999999999888877765 789999999999952 222 234444444444333 4678
Q ss_pred EEEEeccChhHHHHHHHhc-cCCeeeccCCCccccccceEEEEeccCCCCCcchhh-hHHHHHHHHHhcCCCCeEEEEEc
Q psy8497 196 LVVSATYSHDNLATLQKYM-VDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYV-DEEKKLVQLLSQTPFNQCVIFSN 273 (2355)
Q Consensus 196 LLLSATLS~EILElLkKfL-rdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~l-sKkeaLLqLLerl~kgRVLVFSQ 273 (2355)
|+||||+.-.....-.+++ ..|-++.+. .+|+.+.+...+.....|+ ......+.+....+.+.+|||+.
T Consensus 418 IIMSATLRVsDFtenk~LFpi~pPlikVd--------ARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 418 IIMSATLRVSDFTENKRLFPIPPPLIKVD--------ARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVT 489 (1172)
T ss_pred EEEeeeEEecccccCceecCCCCceeeee--------cccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEe
Confidence 9999998743322111111 111122222 2333333333333333333 33466777788888899999999
Q ss_pred ccccHHHHHHHHHhcC----------------------------------------------------------------
Q psy8497 274 YQLRPEVICENLANAN---------------------------------------------------------------- 289 (2355)
Q Consensus 274 TRKmAEiLADyLrErG---------------------------------------------------------------- 289 (2355)
.+..++.|+..|++..
T Consensus 490 GQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~ 569 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFN 569 (1172)
T ss_pred ChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhh
Confidence 9999999999998631
Q ss_pred -----------------------------------CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc
Q psy8497 290 -----------------------------------FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV 334 (2355)
Q Consensus 290 -----------------------------------IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV 334 (2355)
+-+..|++-++.+.+.++++.--.|.-=++|+|++++..|.||.+
T Consensus 570 ~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgI 649 (1172)
T KOG0926|consen 570 ALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGI 649 (1172)
T ss_pred ccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCe
Confidence 113334445555555555555445665689999999999999999
Q ss_pred cEEE--------EecCCC----------CHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 335 DLVI--------NLEIPH----------DAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 335 DTVI--------IyDSP~----------SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
..|| .||.-. |..+--||+|||||+| +|.|+.+++..
T Consensus 650 kYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 650 KYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred eEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999 444432 4556679999999975 68999888653
No 141
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.60 E-value=4.5e-15 Score=152.72 Aligned_cols=149 Identities=21% Similarity=0.250 Sum_probs=100.6
Q ss_pred CCcHHHHHHHHHHHc-------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 43 KESPIQMAAFPYVLN-------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 43 eLRPYQeEALn~LLS-------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
+|+++|.+++..+.. ...++|.+|||+|||++++.++. .+.. ++|||||+..|+.|+.+.+..+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~-~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALIL-ELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHH-HHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhh-cccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 689999999999884 57799999999999988875444 4441 899999999999999999977754
Q ss_pred ccCCcEEEEEECCcc--------------ccCCCCCCcEEEECHHHHHHHHHhh-----------cccCcCceEEEeccc
Q psy8497 116 HVKNLHVDYFIGGTQ--------------VERPKRPVQIVVGSPGRIKQMIKLK-----------YLNMDSVRLFIMDEA 170 (2355)
Q Consensus 116 ~APgLrVVvytGGkq--------------~rkqirq~DILVTTPErLLDLLdrr-----------~LdLSkIdLLIVDEA 170 (2355)
............... ........+|+++|++.|....... ......+++||||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 431111110000000 0011223789999999998765431 123456789999999
Q ss_pred chhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 171 DKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 171 HRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
|++....- +..++. .....+|+|||||.
T Consensus 156 H~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 99875431 334444 45678999999986
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.60 E-value=1.9e-13 Score=177.99 Aligned_cols=118 Identities=16% Similarity=0.158 Sum_probs=88.2
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC--ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF--GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGI--KVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
..|..++... .+++|||+.+.++++.+++.|..... .+..+.-++....|..+++.|+.+.-.||++|....+|||+
T Consensus 742 ~~i~~l~~~~-~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~ 820 (928)
T PRK08074 742 AYIAKIAKAT-KGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDI 820 (928)
T ss_pred HHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCcccc
Confidence 4444444433 46999999999999999999976432 23344445555678999999999888899999999999999
Q ss_pred CCc--cEEEEecCCCC-H-----------------------------hHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 332 ANV--DLVINLEIPHD-A-----------------------------ATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 332 PaV--DTVIIyDSP~S-P-----------------------------qSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
|.- .+||+...|+. | ..+.|.+||+-|...+..+|++++..
T Consensus 821 pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 821 PGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred CCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 984 78999998872 1 13469999999977665566666543
No 143
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.59 E-value=2.5e-14 Score=137.37 Aligned_cols=140 Identities=33% Similarity=0.544 Sum_probs=106.5
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----C
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----P 134 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----q 134 (2355)
++++|.+|||+|||.+++..+...+.. ...+++||++|+..|+.|+.+.+..+... .+.+..+.+...... .
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~--~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS--LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc--ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh
Confidence 368999999999999888777766553 34678999999999999999988887643 466777776654332 2
Q ss_pred CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEecc
Q psy8497 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 135 irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATL 202 (2355)
....+|+|+|++.+...+.........+++|||||+|.+....+...............+++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 34589999999998877765544566788999999999887664443333445556778999999997
No 144
>KOG0951|consensus
Probab=99.58 E-value=2.3e-14 Score=182.73 Aligned_cols=354 Identities=17% Similarity=0.246 Sum_probs=236.8
Q ss_pred CCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHH-HHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAV-QITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAq-Q~anwLREFgk~APgL 120 (2355)
...|+|.++++-++.. .+++|++|+|+|||+|+-++++. +....++++++|.-+++. |...|.++|..- -++
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~ 1216 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGL 1216 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCc
Confidence 3488999999998874 56999999999999999888875 466789999999999884 455677777655 589
Q ss_pred EEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC------hHHHHHHHHHhCCCCc
Q psy8497 121 HVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG------FVEDITWIYSQLPPMK 193 (2355)
Q Consensus 121 rVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G------F~SrLeeILs~Lppnr 193 (2355)
.++.++|...... .++..+|+|+||+.+..+ + ..+.+++.|+||.|.+.... ..+ +..|...+....
T Consensus 1217 ~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~i 1290 (1674)
T KOG0951|consen 1217 RIVKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKI 1290 (1674)
T ss_pred eEEecCCccccchHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhhe
Confidence 9999999877653 345589999999998555 2 67889999999999877322 123 667777777888
Q ss_pred eEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcC-CCCeEEEEE
Q psy8497 194 QMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT-PFNQCVIFS 272 (2355)
Q Consensus 194 QILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl-~kgRVLVFS 272 (2355)
+++.+|..+... ...+. +...-++.......+.+...+ +.-+................+..+.... ...+.|||+
T Consensus 1291 r~v~ls~~lana-~d~ig--~s~~~v~Nf~p~~R~~Pl~i~-i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~ 1366 (1674)
T KOG0951|consen 1291 RVVALSSSLANA-RDLIG--ASSSGVFNFSPSVRPVPLEIH-IQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFL 1366 (1674)
T ss_pred eEEEeehhhccc-hhhcc--ccccceeecCcccCCCceeEE-EEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEe
Confidence 999999877632 22211 111222222222222222222 2222222111111122222222222222 235899999
Q ss_pred cccccHHHHHHHHHhc----------------------CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccC
Q psy8497 273 NYQLRPEVICENLANA----------------------NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGID 330 (2355)
Q Consensus 273 QTRKmAEiLADyLrEr----------------------GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLD 330 (2355)
++++.+..++..|-.. -++..+-|-+|+..+...+-..|..|.+.|+|...- ..|+-
T Consensus 1367 p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~ 1445 (1674)
T KOG0951|consen 1367 PTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTK 1445 (1674)
T ss_pred ccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccc
Confidence 9999987766554321 122222288999999999999999999999998877 88888
Q ss_pred CCCccEEEEec-----------CCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHh---------hcccccc
Q psy8497 331 AANVDLVINLE-----------IPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE---------INLDHAF 390 (2355)
Q Consensus 331 LPaVDTVIIyD-----------SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrRe---------LKLKLaL 390 (2355)
+. +++||.++ .|++...++|++|+|+| .++||+++.......++++..+ .-+...+
T Consensus 1446 ~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~ 1521 (1674)
T KOG0951|consen 1446 LK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNF 1521 (1674)
T ss_pred cc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhh
Confidence 74 45555333 34578999999999999 5688888888777777666321 1222244
Q ss_pred ccCCCccchhhhh-----hhHHHHHHHHHhCC
Q psy8497 391 NVGLVPDNLTGDQ-----INWTQRVQTLLAKP 417 (2355)
Q Consensus 391 e~eIVPkgLlKeq-----iDw~~~LERILKnP 417 (2355)
..+++...+...+ .+|.+.++++..+|
T Consensus 1522 n~ei~~~tienkqd~vd~lt~s~~yrr~~~np 1553 (1674)
T KOG0951|consen 1522 NAEIVTKTIENKQDAVDYLTWSFMYRRLPQNP 1553 (1674)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccccCc
Confidence 5555555555554 67788888888777
No 145
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=4.8e-13 Score=169.98 Aligned_cols=327 Identities=16% Similarity=0.154 Sum_probs=205.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+.-.|..|+ |..+.||-|||+++++|++.... .+..|-||+....||..=.+|+..+..++
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL----~GkgVhVVTvNdYLA~RDae~mg~vy~fL- 146 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNAL----TGKGVIVSTVNEYLAERDAEEMGKVFNFL- 146 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHh----cCCceEEEecchhhhhhhHHHHHHHHHHh-
Confidence 465 88999999887777664 89999999999999987754322 36778999999999999999999998888
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHHH-HHHHhh------cccCcCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRIK-QMIKLK------YLNMDSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErLL-DLLdrr------~LdLSkIdLLIVDEAHRLk-N~------------ 176 (2355)
++.|.++..+.... ...-.++|+++|...|- ++|+.. ..-.+.+.+.||||++.++ +.
T Consensus 147 GLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~ 226 (925)
T PRK12903 147 GLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQS 226 (925)
T ss_pred CCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCc
Confidence 99998887653322 23344899999987542 344322 1234778899999999754 21
Q ss_pred ---ChHHHHHHHHHhCCC-------CceEEEEEeccC--------------h-------hHHHHHHH--hcc-C-Ceee-
Q psy8497 177 ---GFVEDITWIYSQLPP-------MKQMLVVSATYS--------------H-------DNLATLQK--YMV-D-PLLI- 220 (2355)
Q Consensus 177 ---GF~SrLeeILs~Lpp-------nrQILLLSATLS--------------~-------EILElLkK--fLr-d-PvII- 220 (2355)
.++..+..++..+.. ..+.+.||..-. . .+...+.. ++. + .+++
T Consensus 227 ~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~ 306 (925)
T PRK12903 227 NDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVR 306 (925)
T ss_pred cchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 134444444444432 112233332100 0 00000100 000 0 0000
Q ss_pred -----ccCC-Ccc--------------------------------------------------c----ccc----ceEEE
Q psy8497 221 -----RPED-ATR--------------------------------------------------P----LLG----VKQLV 236 (2355)
Q Consensus 221 -----rVes-ee~--------------------------------------------------~----~se----VrQvV 236 (2355)
.+.. ... . ... ...-+
T Consensus 307 dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~V 386 (925)
T PRK12903 307 DGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRV 386 (925)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCE
Confidence 0000 000 0 000 00111
Q ss_pred EeccCCC---------CCcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHH
Q psy8497 237 ALIPECK---------NPSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305 (2355)
Q Consensus 237 vqVpe~k---------n~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERq 305 (2355)
..+|... ..+.+...+..++...+.. ..+.+|||.|.++...+.|...|...|+...+|+..-...|-.
T Consensus 387 v~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~ 466 (925)
T PRK12903 387 NVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAE 466 (925)
T ss_pred EECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHH
Confidence 2222111 1111222333444443321 2456999999999999999999999999999999864433322
Q ss_pred HHHHHHhCCC-ccEEEEecccccccCCCCcc--------EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 306 ASLDSFKRGK-VRILVTTDLAARGIDAANVD--------LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 306 eILErFRSGE-IdVLVSTSALGEGLDLPaVD--------TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
++. ..|. -.|.|||+++|+|.||.--. +||....+-|..-.-|..|||||.|.+|.+..|++-.+.-+
T Consensus 467 -IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~ 543 (925)
T PRK12903 467 -IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLF 543 (925)
T ss_pred -HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHH
Confidence 222 3554 46999999999999986433 79999999999999999999999999999988887665443
No 146
>KOG0953|consensus
Probab=99.55 E-value=1.3e-13 Score=166.94 Aligned_cols=271 Identities=19% Similarity=0.243 Sum_probs=180.3
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC--CCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK--RPV 138 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi--rq~ 138 (2355)
++-++||.+|||.-+ |+.+.. .+.-+|.-|++.||.++++.+.+. ++.+.+++|.+...... ..+
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~----aksGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~~~~a 260 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKS----AKSGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDNGNPA 260 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhh----hccceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCCCCcc
Confidence 455899999999554 444442 445699999999999999999887 56778888876544322 237
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC-CCceEEEEEeccChhHHHHHHHhcc--
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-PMKQMLVVSATYSHDNLATLQKYMV-- 215 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp-pnrQILLLSATLS~EILElLkKfLr-- 215 (2355)
..+-+|.|++ . .-..+++.||||+++|.+...+-.+...+-.+. .... |.+-+. ++.+....+.
T Consensus 261 ~hvScTVEM~-------s-v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiH---LCGeps--vldlV~~i~k~T 327 (700)
T KOG0953|consen 261 QHVSCTVEMV-------S-VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIH---LCGEPS--VLDLVRKILKMT 327 (700)
T ss_pred cceEEEEEEe-------e-cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhh---ccCCch--HHHHHHHHHhhc
Confidence 7888898876 1 135678999999999998775444444333321 1111 222222 3334443322
Q ss_pred -CCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCc-cE
Q psy8497 216 -DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFG-AE 293 (2355)
Q Consensus 216 -dPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIK-Va 293 (2355)
+.+.+ ..+..+-+- ...+.++.-+...+.+-+|| |-+++.+-.+...+.+.+.. ++
T Consensus 328 Gd~vev------------~~YeRl~pL---------~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 328 GDDVEV------------REYERLSPL---------VVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred CCeeEE------------EeecccCcc---------eehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceE
Confidence 11111 111111111 11123455555555566654 33577778888888888765 99
Q ss_pred EeeCCCCHHHHHHHHHHHhC--CCccEEEEecccccccCCCCccEEEEecCC---------CCHhHHHHHhhccCCCCC-
Q psy8497 294 YLSGAQDQKARLASLDSFKR--GKVRILVTTDLAARGIDAANVDLVINLEIP---------HDAATYLHRMGRAGRYGT- 361 (2355)
Q Consensus 294 rLHGgMSqEERqeILErFRS--GEIdVLVSTSALGEGLDLPaVDTVIIyDSP---------~SPqSYIQRIGRAGRiGQ- 361 (2355)
+|+|+++++.|.+--..|++ ++++|||||+++++|||| .++-||+++.- .+..+..|.+|||||.|.
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999997 899999999999999999 67888888765 367899999999999872
Q ss_pred --ccEEEEEEcccCHHHHHHHH
Q psy8497 362 --RGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 362 --kGkVIVLVSsdDVEeIEsLr 381 (2355)
.|.|-.+. ..+...+..++
T Consensus 465 ~~~G~vTtl~-~eDL~~L~~~l 485 (700)
T KOG0953|consen 465 YPQGEVTTLH-SEDLKLLKRIL 485 (700)
T ss_pred CcCceEEEee-HhhHHHHHHHH
Confidence 34444443 33444444444
No 147
>KOG1016|consensus
Probab=99.55 E-value=5.1e-14 Score=172.79 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=102.9
Q ss_pred CeEEEEEcccccHHHHHHHHHhc------------------CCccEEeeCCCCHHHHHHHHHHHhCCC---ccEEEEecc
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA------------------NFGAEYLSGAQDQKARLASLDSFKRGK---VRILVTTDL 324 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr------------------GIKVarLHGgMSqEERqeILErFRSGE---IdVLVSTSA 324 (2355)
.++|||++....++.|.+.|..+ ...+.+++|..+..+|.++|+.|++.- .-|||+|++
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 47899999999999999999874 245778999999999999999999642 358999999
Q ss_pred cccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 325 LGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+..||||-.++-+|+||.-|++--.+|++-|+.|.|+...|++|....+..+.++|..
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIyd 857 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYD 857 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999888777777666643
No 148
>KOG4150|consensus
Probab=99.55 E-value=4.2e-14 Score=170.04 Aligned_cols=336 Identities=13% Similarity=0.051 Sum_probs=222.2
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
+...++..--.....+|.++++++-+|+++++.-.|.+||.+++.++....+.. .....++++.|+.++++.....+.
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL--CHATNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc--CcccceecchhHHHHhhccCCceE
Confidence 333444444457789999999999999999999999999999999888776653 345568999999999765444332
Q ss_pred HHhcccCCc---EEEEEECCccccCC---CCCCcEEEECHHHHHHHHHhhcccC----cCceEEEecccchhcccChHHH
Q psy8497 112 SVGAHVKNL---HVDYFIGGTQVERP---KRPVQIVVGSPGRIKQMIKLKYLNM----DSVRLFIMDEADKLINTGFVED 181 (2355)
Q Consensus 112 EFgk~APgL---rVVvytGGkq~rkq---irq~DILVTTPErLLDLLdrr~LdL----SkIdLLIVDEAHRLkN~GF~Sr 181 (2355)
-.....|.+ -|.++.|....... ....++|++.|.++........+.+ -...++++||+|..+-. +.+.
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~ 431 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKAL 431 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhH
Confidence 221112211 22333333322211 1227899999998765544333333 23347899999976533 2222
Q ss_pred H----HHHHH---hC--CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcch----
Q psy8497 182 I----TWIYS---QL--PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLR---- 248 (2355)
Q Consensus 182 L----eeILs---~L--ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt---- 248 (2355)
+ ..++. .+ ....|++-.+||+.....-....+-...+. .......+...+.++.|.|...-....
T Consensus 432 ~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~--Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 432 AQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELE--LVTIDGSPSSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceE--EEEecCCCCccceEEEeCCCCCCcchhhhhh
Confidence 2 12221 11 345788888999876655444433222222 222233445566777776654322211
Q ss_pred h-hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC--------ccEEeeCCCCHHHHHHHHHHHhCCCccEE
Q psy8497 249 Y-VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF--------GAEYLSGAQDQKARLASLDSFKRGKVRIL 319 (2355)
Q Consensus 249 ~-lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGI--------KVarLHGgMSqEERqeILErFRSGEIdVL 319 (2355)
. ......+.+++... -|+|.||..++.|+.|....++.-+ .+.-+.|+...++|.++...+--|.+.-+
T Consensus 510 ~i~E~s~~~~~~i~~~--~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~gi 587 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHG--LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGI 587 (1034)
T ss_pred HHHHHHHHHHHHHHcC--CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEE
Confidence 1 11223344444332 5999999999999887666554321 23446689999999999999999999999
Q ss_pred EEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 320 VSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|+|++++.||||...+.|+.+..|.|..++.|..|||||.+++...++++....+
T Consensus 588 IaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PV 642 (1034)
T KOG4150|consen 588 IATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPV 642 (1034)
T ss_pred EecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccch
Confidence 9999999999999999999999999999999999999999988876666644333
No 149
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.53 E-value=2e-14 Score=133.42 Aligned_cols=78 Identities=33% Similarity=0.612 Sum_probs=75.7
Q ss_pred HHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCC
Q psy8497 283 ENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360 (2355)
Q Consensus 283 DyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG 360 (2355)
++|...++.+..+||+|+..+|..+++.|+.+...|||||+++++|||+|.+++||++++|+++..|+|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999976
No 150
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.52 E-value=4e-12 Score=159.90 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC----CCccEEEEecccccc
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR----GKVRILVTTDLAARG 328 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS----GEIdVLVSTSALGEG 328 (2355)
...+..++.... +++||.+.+.++++.+++.|...---..++.|..+ .+..+++.|+. +.-.||++|..+.+|
T Consensus 459 ~~~~~~~~~~~~-G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 459 SLSTAAILRKAQ-GGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred HHHHHHHHHHcC-CCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 355666665543 58888888999999999999763222344555432 45678889987 468899999999999
Q ss_pred cCC----------CCccEEEEecCCCCH-------------------------hHHHHHhhccCCCCCc--cEEEEEEc
Q psy8497 329 IDA----------ANVDLVINLEIPHDA-------------------------ATYLHRMGRAGRYGTR--GLVITIVS 370 (2355)
Q Consensus 329 LDL----------PaVDTVIIyDSP~SP-------------------------qSYIQRIGRAGRiGQk--GkVIVLVS 370 (2355)
||+ ..+++|||.-.||.+ ..+.|.+||.-|...+ ..+|++++
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD 614 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLD 614 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEe
Confidence 999 238899999999732 2345777887776554 44444444
No 151
>KOG0383|consensus
Probab=99.50 E-value=8.1e-16 Score=192.43 Aligned_cols=276 Identities=20% Similarity=0.229 Sum_probs=182.6
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
..|.+||.++++|+.. +.++|++++||+|||++ .+.++..+.......+++|+++|..+. .+|-+++..|+
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVq-si~fl~sl~~~~~~~~P~Lv~ap~sT~----~nwe~e~~~wa 368 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQ-SIVFLYSLPKEIHSPGPPLVVAPLSTI----VNWEREFELWA 368 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceee-EEEEEeecccccCCCCCceeeccCccc----cCCCCchhccC
Confidence 4789999999999874 57899999999999954 444554555444456789999999999 78888899999
Q ss_pred CCcEEEEEECCccccCCCC--------------------------CCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 118 KNLHVDYFIGGTQVERPKR--------------------------PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqir--------------------------q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
|.+.++.+.|....+..++ .+++++++|++.. +....+....|.++|+||+|
T Consensus 369 p~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~--~~~~il~~v~w~~livde~~ 446 (696)
T KOG0383|consen 369 PSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIE--IDQSILFSVQWGLLIVDEAH 446 (696)
T ss_pred CCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcc--cCHHHHhhhhcceeEeechh
Confidence 9999999998865432111 1788999998762 22234446678899999999
Q ss_pred hhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccC--Ceeec----------------------------
Q psy8497 172 KLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVD--PLLIR---------------------------- 221 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrd--PvIIr---------------------------- 221 (2355)
++.+.. +.....+...+... -++++.|+.++....+...|.- +..+.
T Consensus 447 rlkn~~--s~~f~~l~~~~~~~-~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~l~~p~ 523 (696)
T KOG0383|consen 447 RLKNKQ--SKRFRVLTAYPIDS-KLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHLLLCPH 523 (696)
T ss_pred hcccch--hhhhhhccccccch-hhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhccccCch
Confidence 999765 44444555443333 3566777766655555443310 00000
Q ss_pred ------cCCCccccccceEEEEe-c-----------------------------------------------cCCCCCcc
Q psy8497 222 ------PEDATRPLLGVKQLVAL-I-----------------------------------------------PECKNPSL 247 (2355)
Q Consensus 222 ------Vesee~~~seVrQvVvq-V-----------------------------------------------pe~kn~sL 247 (2355)
.+...........+..+ + .+......
T Consensus 524 ~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~ 603 (696)
T KOG0383|consen 524 MLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELRKQCNHPYLSPLEEPLEENG 603 (696)
T ss_pred hhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHHHhhcCcccCccccccccch
Confidence 00000000000000000 0 00000000
Q ss_pred hh--------hhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC---C
Q psy8497 248 RY--------VDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR---G 314 (2355)
Q Consensus 248 t~--------lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS---G 314 (2355)
.+ ..++..|+..+... ..+|||||++++++++.|.+++...+ .+.+++|.....+|+.++.+|+. .
T Consensus 604 ~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~ 682 (696)
T KOG0383|consen 604 EYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSN 682 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCcc
Confidence 00 11222233333222 35799999999999999999999999 99999999999999999999994 5
Q ss_pred CccEEEEecccccc
Q psy8497 315 KVRILVTTDLAARG 328 (2355)
Q Consensus 315 EIdVLVSTSALGEG 328 (2355)
.+++|+||++++.|
T Consensus 683 ~~cfllstra~g~g 696 (696)
T KOG0383|consen 683 QFCFLLSTRAGGLG 696 (696)
T ss_pred ceEEEeecccccCC
Confidence 78999999999887
No 152
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.50 E-value=1.6e-13 Score=152.52 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=101.3
Q ss_pred HHHHHHHHHHcC-------------CcEEEEccCCchHHHHHHHHHHHHHHhcCCC--CCeEEEEcccHHHHHHHHHHHH
Q psy8497 47 IQMAAFPYVLNG-------------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ--QPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 47 YQeEALn~LLSG-------------RNVILAAPTGSGKTLVALIAILerL~ekr~q--ggRVLILVPTRALAqQ~anwLR 111 (2355)
||.+++.|++.. +.+||+++||+|||++++.. +..+...... ..++|||||. .+..||...+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~-~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIAL-ISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHH-HHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhh-hhhhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 799999998643 45999999999999776644 4444432221 2359999999 67688888888
Q ss_pred HHhcccCCcEEEEEECCc----cccCCCCCCcEEEECHHHHHHH---HHhhcccCcCceEEEecccchhcccChHHHHHH
Q psy8497 112 SVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVGSPGRIKQM---IKLKYLNMDSVRLFIMDEADKLINTGFVEDITW 184 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGk----q~rkqirq~DILVTTPErLLDL---Ldrr~LdLSkIdLLIVDEAHRLkN~GF~SrLee 184 (2355)
++.... .+++..+.|.. .........+|+|+||+.+... .....+....|++|||||+|.+.+.. .....
T Consensus 79 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~~ 155 (299)
T PF00176_consen 79 KWFDPD-SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRYK 155 (299)
T ss_dssp HHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHHH
T ss_pred cccccc-cccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--ccccc
Confidence 886432 56888888776 1122344589999999999710 11122223559999999999997654 55555
Q ss_pred HHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 185 IYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 185 ILs~LppnrQILLLSATLS~EILElLk 211 (2355)
.+..+. ...+++|||||..+....+.
T Consensus 156 ~l~~l~-~~~~~lLSgTP~~n~~~dl~ 181 (299)
T PF00176_consen 156 ALRKLR-ARYRWLLSGTPIQNSLEDLY 181 (299)
T ss_dssp HHHCCC-ECEEEEE-SS-SSSGSHHHH
T ss_pred cccccc-cceEEeeccccccccccccc
Confidence 555565 67788999998876544333
No 153
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.49 E-value=2.9e-12 Score=163.51 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=95.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+.-.+.+ .-|..+.||.|||++++++++.... .+..|.||+++..||.+-.+|+..+..++
T Consensus 73 lG~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL----~G~~VhVvT~NdyLA~RD~e~m~pvy~~L- 144 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNAL----TGKGVHIVTVNDYLAKRDQEWMGQIYRFL- 144 (870)
T ss_pred hCC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHh----cCCceEEEeCCHHHHHHHHHHHHHHHHHc-
Confidence 566 688999887766654 4699999999999999888753322 36779999999999999999999999888
Q ss_pred CcEEEEEECCccccC--CCCCCcEEEECHHHHH-HHHHhh------cccCcCceEEEecccchhc
Q psy8497 119 NLHVDYFIGGTQVER--PKRPVQIVVGSPGRIK-QMIKLK------YLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--qirq~DILVTTPErLL-DLLdrr------~LdLSkIdLLIVDEAHRLk 174 (2355)
++.|.++.++..... ..-.++|+++|...|- ++|+.. ....+.+.++||||++.++
T Consensus 145 GLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 899998877654332 2334899999986432 333221 1234678899999999754
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.49 E-value=1.5e-12 Score=164.71 Aligned_cols=288 Identities=11% Similarity=0.082 Sum_probs=176.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC-------
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER------- 133 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk------- 133 (2355)
.|+.+.+|+|||.+|+-++-..|. .++.+|||+|...|+.|+...|++.+. ...++++++......
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~----~Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLR----AGRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHH----cCCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHH
Confidence 344455699999999988877776 377899999999999999999998763 245777777644321
Q ss_pred -CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc--ccC---hHHHHHHHHHhCCCCceEEEEEeccChhHH
Q psy8497 134 -PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI--NTG---FVEDITWIYSQLPPMKQMLVVSATYSHDNL 207 (2355)
Q Consensus 134 -qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk--N~G---F~SrLeeILs~LppnrQILLLSATLS~EIL 207 (2355)
......|||+|...+ +..+.++++|||||-|--. +.. |..+-..++........+|+.|||++-+..
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 123378999998877 6678899999999999532 221 223323333333457889999999996655
Q ss_pred HHHHHhccCCeeeccCCCccccccceEEEEecc-CC-CC----CcchhhhHHHHHHHHHhcCCCCeEEEEEcccc-----
Q psy8497 208 ATLQKYMVDPLLIRPEDATRPLLGVKQLVALIP-EC-KN----PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQL----- 276 (2355)
Q Consensus 208 ElLkKfLrdPvIIrVesee~~~seVrQvVvqVp-e~-kn----~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRK----- 276 (2355)
.....-..................+ .++..-. .. .+ ...........+.+.|.. ++||||.+.+-
T Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~P~v-~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~---gqvll~lnRrGyap~l 384 (665)
T PRK14873 309 ALVESGWAHDLVAPRPVVRARAPRV-RALGDSGLALERDPAARAARLPSLAFRAARDALEH---GPVLVQVPRRGYVPSL 384 (665)
T ss_pred HHHhcCcceeeccccccccCCCCeE-EEEeCchhhhccccccccCccCHHHHHHHHHHHhc---CcEEEEecCCCCCCee
Confidence 4433211110000000000111111 1111100 00 00 001222334555555543 27888777321
Q ss_pred ------------------------------------------------------cHHHHHHHHHhc--CCccEEeeCCCC
Q psy8497 277 ------------------------------------------------------RPEVICENLANA--NFGAEYLSGAQD 300 (2355)
Q Consensus 277 ------------------------------------------------------mAEiLADyLrEr--GIKVarLHGgMS 300 (2355)
-.+.+++.|... +..+.++++
T Consensus 385 ~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~--- 461 (665)
T PRK14873 385 ACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGG--- 461 (665)
T ss_pred EhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEECh---
Confidence 124555555554 234455443
Q ss_pred HHHHHHHHHHHhCCCccEEEEec----ccccccCCCCccEEEEecCCC------------CHhHHHHHhhccCCCCCccE
Q psy8497 301 QKARLASLDSFKRGKVRILVTTD----LAARGIDAANVDLVINLEIPH------------DAATYLHRMGRAGRYGTRGL 364 (2355)
Q Consensus 301 qEERqeILErFRSGEIdVLVSTS----ALGEGLDLPaVDTVIIyDSP~------------SPqSYIQRIGRAGRiGQkGk 364 (2355)
..+++.|. ++.+|||+|+ ++. +.+++|+++|.+. ..+.+.|.+|||||....|.
T Consensus 462 ----d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~ 531 (665)
T PRK14873 462 ----DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQ 531 (665)
T ss_pred ----HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCE
Confidence 24788886 5899999999 554 3678899888773 35678999999999888999
Q ss_pred EEEEEcccCHHHHHHH
Q psy8497 365 VITIVSAESLVKFHSL 380 (2355)
Q Consensus 365 VIVLVSsdDVEeIEsL 380 (2355)
|++.. ..+...+..+
T Consensus 532 V~iq~-~p~~~~~~~l 546 (665)
T PRK14873 532 VVVVA-ESSLPTVQAL 546 (665)
T ss_pred EEEEe-CCCCHHHHHH
Confidence 99885 4443444444
No 155
>KOG0925|consensus
Probab=99.47 E-value=2.6e-12 Score=154.04 Aligned_cols=319 Identities=16% Similarity=0.190 Sum_probs=198.1
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
+-+|.....++ ..+.|+...-...+.++.+-+..+.+++-+|++++||+|||.+.-...+..... ....|...-|.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~---~~~~v~CTQpr 100 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS---HLTGVACTQPR 100 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh---hccceeecCch
Confidence 55677777777 555555443334566666777777778889999999999997554444444332 12446666799
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHH---------hhcccCcCceEEEeccc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIK---------LKYLNMDSVRLFIMDEA 170 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLd---------rr~LdLSkIdLLIVDEA 170 (2355)
+..+.++...+.+-- ++.+.--+|-. ++.. =.+++.+|+.+.. ... .+..|++||+|||
T Consensus 101 rvaamsva~RVadEM----Dv~lG~EVGys-IrfE------dC~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDea 168 (699)
T KOG0925|consen 101 RVAAMSVAQRVADEM----DVTLGEEVGYS-IRFE------DCTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEA 168 (699)
T ss_pred HHHHHHHHHHHHHHh----ccccchhcccc-cccc------ccCChhHHHHHhcchHHHHHHhhCc-ccccccEEEechh
Confidence 999999887776532 22221111111 0100 0244554443222 222 3678999999999
Q ss_pred ch-hcccC-hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcch
Q psy8497 171 DK-LINTG-FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLR 248 (2355)
Q Consensus 171 HR-LkN~G-F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt 248 (2355)
|. .+... ....+..++... +..++|.||||+... .+..|+.++-++.+... .+++.+ +.++....+
T Consensus 169 hERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~----~PvEi~--Yt~e~erDy-- 236 (699)
T KOG0925|consen 169 HERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGT----HPVEIF--YTPEPERDY-- 236 (699)
T ss_pred hhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCCC----CceEEE--ecCCCChhH--
Confidence 94 22222 223334444444 588999999998643 44555555555555431 122222 222221111
Q ss_pred hhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc---------CCccEEeeCCCCHHHHHHHHHHHh---CC--
Q psy8497 249 YVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA---------NFGAEYLSGAQDQKARLASLDSFK---RG-- 314 (2355)
Q Consensus 249 ~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr---------GIKVarLHGgMSqEERqeILErFR---SG-- 314 (2355)
.......++++......+-+|||....+.++..++.+... .+++..|+ +.+.+.+++-.- +|
T Consensus 237 lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~ 312 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAY 312 (699)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCc
Confidence 2233466677766666789999999999999888888743 25677777 333344333222 12
Q ss_pred CccEEEEecccccccCCCCccEEE------------------EecCCCCHhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 315 KVRILVTTDLAARGIDAANVDLVI------------------NLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 315 EIdVLVSTSALGEGLDLPaVDTVI------------------IyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
.-+|+|+|++++..|-++.+.+|| .+-.|.|..+-.||.||||| -.+|+++.++..
T Consensus 313 ~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragr-t~pGkcfrLYte 386 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR-TRPGKCFRLYTE 386 (699)
T ss_pred cceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccC-CCCCceEEeecH
Confidence 236999999999999999999998 22245577788899999998 489999999864
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.46 E-value=1.8e-11 Score=153.55 Aligned_cols=117 Identities=20% Similarity=0.199 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCc-cEEeeCCCCHHHHHHHHHHHhCCCc-cEEEEecccccc
Q psy8497 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFG-AEYLSGAQDQKARLASLDSFKRGKV-RILVTTDLAARG 328 (2355)
Q Consensus 251 sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIK-VarLHGgMSqEERqeILErFRSGEI-dVLVSTSALGEG 328 (2355)
.....|..++...++ ++|||+++-++++.+.+.|...... ....+|.. .+..+++.|..+.- -|||+|..+.+|
T Consensus 466 ~~~~~i~~~~~~~~~-~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EG 541 (654)
T COG1199 466 KLAAYLREILKASPG-GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEG 541 (654)
T ss_pred HHHHHHHHHHhhcCC-CEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCc
Confidence 334566666666554 9999999999999999999976553 33344433 34478888886544 899999999999
Q ss_pred cCCCCc--cEEEEecCCCC------------------------------HhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 329 IDAANV--DLVINLEIPHD------------------------------AATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 329 LDLPaV--DTVIIyDSP~S------------------------------PqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
||+|.- .+||+...|+. ...+.|++||+.|.-.+.-++++++.
T Consensus 542 VD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 542 VDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred ccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 999985 77999998872 23567999999996666666666654
No 157
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=2e-11 Score=155.99 Aligned_cols=128 Identities=14% Similarity=0.223 Sum_probs=98.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+--.|.+|+ |..+.||-|||+++.+|++.... .+..|-||+++..||..=.+|+..+..++
T Consensus 82 lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL----~GkgVhVVTvNdYLA~RDae~m~~vy~~L- 153 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNAL----TGKGVHVVTVNDYLARRDAEWMGQVHRFL- 153 (939)
T ss_pred hCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhh----cCCCeEEEeCCHHHHHhHHHHHHHHHHHh-
Confidence 565 78889988877776554 99999999999999888765433 36779999999999999999999999888
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHH-----HHHHHh--hcccCcCceEEEecccchhc
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRI-----KQMIKL--KYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErL-----LDLLdr--r~LdLSkIdLLIVDEAHRLk 174 (2355)
++.|.++.++.... ...-.++|+++|...| .+.+.. .....+.+.++||||++.++
T Consensus 154 GLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 154 GLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99999987754332 2334489999998765 333322 12235778899999999754
No 158
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.40 E-value=8.8e-13 Score=119.74 Aligned_cols=81 Identities=41% Similarity=0.704 Sum_probs=77.5
Q ss_pred HHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC
Q psy8497 280 VICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY 359 (2355)
Q Consensus 280 iLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi 359 (2355)
.+.++|...++.+..+||.|+..+|..+++.|+.+...|||+|+++++|+|+|.+++||++++|+++..++|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy8497 360 G 360 (2355)
Q Consensus 360 G 360 (2355)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 159
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=1.7e-10 Score=146.93 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC-------ccEEeeCCCCHHHHHHHHHHHhC----CCccEEEEe
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF-------GAEYLSGAQDQKARLASLDSFKR----GKVRILVTT 322 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGI-------KVarLHGgMSqEERqeILErFRS----GEIdVLVST 322 (2355)
..|..++... .+.+|||+++-..++.+.+.+...++ +..++-+. ...++..+++.|+. +.-.||+|+
T Consensus 512 ~~i~~~~~~~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av 589 (705)
T TIGR00604 512 ELLVEFSKII-PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSV 589 (705)
T ss_pred HHHHHHhhcC-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEe
Confidence 4444454444 46899999999999999998876432 22333332 22578899999974 445699999
Q ss_pred --cccccccCCCC--ccEEEEecCCC-CH------------------------------hHHHHHhhccCCCCCccEEEE
Q psy8497 323 --DLAARGIDAAN--VDLVINLEIPH-DA------------------------------ATYLHRMGRAGRYGTRGLVIT 367 (2355)
Q Consensus 323 --SALGEGLDLPa--VDTVIIyDSP~-SP------------------------------qSYIQRIGRAGRiGQkGkVIV 367 (2355)
..+.+|||+++ +.+||++..|+ ++ ....|++||+-|.-.+--+|+
T Consensus 590 ~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~ii 669 (705)
T TIGR00604 590 AGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIV 669 (705)
T ss_pred cCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEE
Confidence 78999999998 68899999997 21 234699999999776666777
Q ss_pred EEcc
Q psy8497 368 IVSA 371 (2355)
Q Consensus 368 LVSs 371 (2355)
+++.
T Consensus 670 llD~ 673 (705)
T TIGR00604 670 LLDK 673 (705)
T ss_pred EEeh
Confidence 7654
No 160
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.37 E-value=2.1e-10 Score=146.25 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC----CCccEEEEeccccccc
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR----GKVRILVTTDLAARGI 329 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRS----GEIdVLVSTSALGEGL 329 (2355)
..|..++. . .+++|||+.+.++++.+++.|....-.-.++.|. ..|..+++.|++ +.-.||++|....+||
T Consensus 525 ~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGV 599 (697)
T PRK11747 525 EFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGL 599 (697)
T ss_pred HHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccc
Confidence 44555555 3 3468999999999999999987532123444553 356778877763 6677999999999999
Q ss_pred CCCC--ccEEEEecCCCC-H-----------------------------hHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 330 DAAN--VDLVINLEIPHD-A-----------------------------ATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 330 DLPa--VDTVIIyDSP~S-P-----------------------------qSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
|+|. +.+||+...|+. | ..+.|.+||+-|...+..++++++..
T Consensus 600 D~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 600 DLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 9998 688999998862 1 13469999999976665566666543
No 161
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.30 E-value=1e-10 Score=151.31 Aligned_cols=312 Identities=16% Similarity=0.102 Sum_probs=176.8
Q ss_pred CCcHHHHHHHHHHHc--C----C--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 43 KESPIQMAAFPYVLN--G----Y--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 43 eLRPYQeEALn~LLS--G----R--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
.-+.||-+|++.+.. . . -+|-.|.||+|||++=. -|+..|. ....+.++.|..-+|+|..|.-+.+++-.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLs-d~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALR-DDKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhC-CCCCCceEEEEccccceeccchHHHHHhc
Confidence 457899999998864 1 1 26778999999996543 4444554 34556689999999999888888888754
Q ss_pred cccCCcEEEEEECCcccc----------------------C---CCC------------------------------CCc
Q psy8497 115 AHVKNLHVDYFIGGTQVE----------------------R---PKR------------------------------PVQ 139 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~r----------------------k---qir------------------------------q~D 139 (2355)
.-- .-.+++++|+.... . ... ...
T Consensus 486 ~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 486 NLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred CCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 222 34455555542100 0 000 067
Q ss_pred EEEECHHHHHHHHHh---hcccC----cCceEEEecccchhcccChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHH
Q psy8497 140 IVVGSPGRIKQMIKL---KYLNM----DSVRLFIMDEADKLINTGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 140 ILVTTPErLLDLLdr---r~LdL----SkIdLLIVDEAHRLkN~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLk 211 (2355)
|+|+|++.++..... ....+ -.-..|||||+|-+-... ...+..++..+ ....+||+||||+++.....+.
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 999999998765521 11111 112479999999754322 23333333321 1357899999999987766544
Q ss_pred Hhc-----------c---CCeeeccC--CC-c--------------------------cccccceEE--EEeccCCCCCc
Q psy8497 212 KYM-----------V---DPLLIRPE--DA-T--------------------------RPLLGVKQL--VALIPECKNPS 246 (2355)
Q Consensus 212 KfL-----------r---dPvIIrVe--se-e--------------------------~~~seVrQv--VvqVpe~kn~s 246 (2355)
... . .+..|-.. .+ . ....++... +..++......
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 221 1 11111000 00 0 000011111 11111111000
Q ss_pred -chhhh----HHHHHHHHHhcC------CCCe---EEEEEcccccHHHHHHHHHhc----C--CccEEeeCCCCHHHHHH
Q psy8497 247 -LRYVD----EEKKLVQLLSQT------PFNQ---CVIFSNYQLRPEVICENLANA----N--FGAEYLSGAQDQKARLA 306 (2355)
Q Consensus 247 -Lt~ls----KkeaLLqLLerl------~kgR---VLVFSQTRKmAEiLADyLrEr----G--IKVarLHGgMSqEERqe 306 (2355)
..... ....++.+-... ...+ -||-+.++.-+-.++..|... + +.+..+|+...-..|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 00001 112222221111 1122 266677777777777777654 2 34778899987777766
Q ss_pred HHHHH----------------------hC----CCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCC
Q psy8497 307 SLDSF----------------------KR----GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360 (2355)
Q Consensus 307 ILErF----------------------RS----GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG 360 (2355)
+.+.+ .+ +...|+|+|++++.|+|+ +.+.+|. -+.+...++|++||+.|.+
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccc
Confidence 65443 11 366899999999999998 4565553 3456899999999999976
Q ss_pred C
Q psy8497 361 T 361 (2355)
Q Consensus 361 Q 361 (2355)
.
T Consensus 881 ~ 881 (1110)
T TIGR02562 881 L 881 (1110)
T ss_pred c
Confidence 3
No 162
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=4.5e-10 Score=145.12 Aligned_cols=110 Identities=21% Similarity=0.181 Sum_probs=89.8
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCC-ccEEEEecccccccCCC--------Cc
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK-VRILVTTDLAARGIDAA--------NV 334 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGE-IdVLVSTSALGEGLDLP--------aV 334 (2355)
.+.+|||-+.++...+.|...|...|+...+|.......|-..+-+ .|. -.|.|||+++++|-||. .=
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAGRGTDIkLg~~V~e~GG 703 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAGRGTDIKLSPEVKAAGG 703 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcCCCcCcccchhhHHcCC
Confidence 4469999999999999999999999999888887655444433332 343 35999999999999986 22
Q ss_pred cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 335 DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 335 DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
=+||....+-|..-+.|..|||||.|.+|....|++-.+.-+
T Consensus 704 L~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 704 LAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred CEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 468888899999999999999999999999999987665544
No 163
>KOG1001|consensus
Probab=99.19 E-value=1.4e-10 Score=146.91 Aligned_cols=110 Identities=20% Similarity=0.225 Sum_probs=96.8
Q ss_pred eEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCC-CccE-EEEecccccccCCCCccEEEEecCCC
Q psy8497 267 QCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG-KVRI-LVTTDLAARGIDAANVDLVINLEIPH 344 (2355)
Q Consensus 267 RVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSG-EIdV-LVSTSALGEGLDLPaVDTVIIyDSP~ 344 (2355)
++|||++.+..+..+.-.|...++.+.++.|.|....|.+.+..|..+ ...| |++..+++.|||+..+.+||+.|+=|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 899999999999999999999999999999999999999999999953 3344 67889999999999999999999999
Q ss_pred CHhHHHHHhhccCCCCCccE--EEEEEcccCHHH
Q psy8497 345 DAATYLHRMGRAGRYGTRGL--VITIVSAESLVK 376 (2355)
Q Consensus 345 SPqSYIQRIGRAGRiGQkGk--VIVLVSsdDVEe 376 (2355)
||...-|+|-||||+|+... |..|+..+++++
T Consensus 621 np~~eeQaidR~hrigq~k~v~v~r~~i~dtvee 654 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEE 654 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeeeeeehhhhccHH
Confidence 99999999999999996554 444555555554
No 164
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.16 E-value=1.3e-08 Score=124.23 Aligned_cols=293 Identities=17% Similarity=0.214 Sum_probs=198.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhcccC------------C--------------------cEEEEEECCcccc----
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVGAHVK------------N--------------------LHVDYFIGGTQVE---- 132 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFgk~AP------------g--------------------LrVVvytGGkq~r---- 132 (2355)
..++||||||++..|.++.+.+.++..... + -...++.|+..+.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 357899999999999888888877653310 0 0001111111110
Q ss_pred -----------CCCCCCcEEEECHHHHHHHHHh------hcccCcCceEEEecccchhc--ccChHHHHHHHHHhCCC--
Q psy8497 133 -----------RPKRPVQIVVGSPGRIKQMIKL------KYLNMDSVRLFIMDEADKLI--NTGFVEDITWIYSQLPP-- 191 (2355)
Q Consensus 133 -----------kqirq~DILVTTPErLLDLLdr------r~LdLSkIdLLIVDEAHRLk--N~GF~SrLeeILs~Lpp-- 191 (2355)
......||||++|=-|.-.+.. ..-.++.+.++|||.++.|. ||.+...+...+...|.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 0111279999999888766653 34457899999999999876 33333333333333332
Q ss_pred -------------------CceEEEEEeccChhHHHHHHHhccCC---eeeccCCC-----ccccccceEEEEeccCCCC
Q psy8497 192 -------------------MKQMLVVSATYSHDNLATLQKYMVDP---LLIRPEDA-----TRPLLGVKQLVALIPECKN 244 (2355)
Q Consensus 192 -------------------nrQILLLSATLS~EILElLkKfLrdP---vIIrVese-----e~~~seVrQvVvqVpe~kn 244 (2355)
-.|+|++|+...++...++...+.+. +.+..... ......+.|+...++...-
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 24999999999988888887754331 22222211 2344567777776653321
Q ss_pred Cc---chhhhHHHHHHHHHh-cCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEE
Q psy8497 245 PS---LRYVDEEKKLVQLLS-QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320 (2355)
Q Consensus 245 ~s---Lt~lsKkeaLLqLLe-rl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLV 320 (2355)
.. ..+.--...++-.+. .....++|||+++--.--.|..+|.+.++.++.++--.+..+-.++-..|..|+..|||
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 11 111112243444444 55557999999999999999999999999999999999999999999999999999999
Q ss_pred Eeccc--ccccCCCCccEEEEecCCCCHhHHHHHhhccCCCC------CccEEEEEEcccCHHHHHHHH
Q psy8497 321 TTDLA--ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG------TRGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 321 STSAL--GEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiG------QkGkVIVLVSsdDVEeIEsLr 381 (2355)
.|.=. =.=..|..+..||+|.+|..|+-|...+.-..... ....|.++++.-+...++.+.
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 99532 24445777999999999999998888886555432 257888898888777777663
No 165
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.10 E-value=6.6e-09 Score=132.59 Aligned_cols=293 Identities=15% Similarity=0.183 Sum_probs=176.8
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
.+|-+|||+|||.+.+ -.+.... ..+..++|+|.-.++|+.++...++...-. ++ +.|............++-
T Consensus 52 ~vVRSpMGTGKTtaLi-~wLk~~l--~~~~~~VLvVShRrSL~~sL~~rf~~~~l~--gF--v~Y~d~~~~~i~~~~~~r 124 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALI-RWLKDAL--KNPDKSVLVVSHRRSLTKSLAERFKKAGLS--GF--VNYLDSDDYIIDGRPYDR 124 (824)
T ss_pred EEEECCCCCCcHHHHH-HHHHHhc--cCCCCeEEEEEhHHHHHHHHHHHHhhcCCC--cc--eeeeccccccccccccCe
Confidence 6889999999995433 3333321 145788999999999999999988865321 22 222222222122234677
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh-------HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF-------VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF-------~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
+++..+.|..+. .-.+.++++|||||+-.++..-| ...+..+...+.....+|++-|++.....+++..+
T Consensus 125 LivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~ 201 (824)
T PF02399_consen 125 LIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASC 201 (824)
T ss_pred EEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHh
Confidence 888878775443 12355689999999998765422 12222233445567789999999999999998886
Q ss_pred ccCCeeeccCCC-ccccccceEEEEe-----------cc-C--CC-------------CCc---chhhhHHHHHHHHHhc
Q psy8497 214 MVDPLLIRPEDA-TRPLLGVKQLVAL-----------IP-E--CK-------------NPS---LRYVDEEKKLVQLLSQ 262 (2355)
Q Consensus 214 LrdPvIIrVese-e~~~seVrQvVvq-----------Vp-e--~k-------------n~s---Lt~lsKkeaLLqLLer 262 (2355)
.....+..+... .......+..+.. +. . .. ... .....-...|..-|..
T Consensus 202 Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~ 281 (824)
T PF02399_consen 202 RPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNA 281 (824)
T ss_pred CCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhC
Confidence 433221111111 0000000000000 00 0 00 000 0001122333333333
Q ss_pred CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc--cEEEEe
Q psy8497 263 TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV--DLVINL 340 (2355)
Q Consensus 263 l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV--DTVIIy 340 (2355)
+.+|-||+.+...++.++++......++..+.+.-+..+. +. =++++|||-|.++..||++-.. +-|..|
T Consensus 282 --gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~y 353 (824)
T PF02399_consen 282 --GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAY 353 (824)
T ss_pred --CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceEEEEE
Confidence 3578899999999999999999988899999886655422 11 3578999999999999998654 334444
Q ss_pred cCC--C--CHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 341 EIP--H--DAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 341 DSP--~--SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
=-| . +..+..|++||+-.. ....++++++..
T Consensus 354 vk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 354 VKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred ecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 223 2 455689999999775 445667776543
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.85 E-value=1.3e-07 Score=124.84 Aligned_cols=301 Identities=15% Similarity=0.183 Sum_probs=163.4
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCC--
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-- 136 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqir-- 136 (2355)
+..+|.--+|||||++.+..+- .|.+. ...+.|||||-.+.|-.|+.+.+..+........ -..........+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~~l~~~ 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKELLEDG 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHHHHhcC
Confidence 4599999999999987664443 34433 6678899999999999999999999865441111 0111111111111
Q ss_pred CCcEEEECHHHHHHHHHhh--cccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHH-----
Q psy8497 137 PVQIVVGSPGRIKQMIKLK--YLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT----- 209 (2355)
Q Consensus 137 q~DILVTTPErLLDLLdrr--~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILEl----- 209 (2355)
.-.|||||-+.|....... ......--+||+|||||-- ++..-..+...++ ....+++|+||.......
T Consensus 350 ~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~tt~~~ 425 (962)
T COG0610 350 KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-KAIFIGFTGTPIFKEDKDTTKDV 425 (962)
T ss_pred CCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc-cceEEEeeCCccccccccchhhh
Confidence 2479999999987777553 1112333479999999843 2233333344443 478899999987443222
Q ss_pred HHHhccCCeeeccCCCccccccceEEEE-eccCCCC--C-cchh------------------------------hhHH--
Q psy8497 210 LQKYMVDPLLIRPEDATRPLLGVKQLVA-LIPECKN--P-SLRY------------------------------VDEE-- 253 (2355)
Q Consensus 210 LkKfLrdPvIIrVesee~~~seVrQvVv-qVpe~kn--~-sLt~------------------------------lsKk-- 253 (2355)
...++ ..+.+...........+..... .+..... . .... ....
T Consensus 426 fg~yl-h~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~ 504 (962)
T COG0610 426 FGDYL-HTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRA 504 (962)
T ss_pred hccee-EEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHH
Confidence 11211 1111211111111111110000 0000000 0 0000 0000
Q ss_pred -HHHHHHHh--cCCCCeEEEEEcccccHHHHHHHHHhcC-------------------Cc----cEEeeCCCCHHHHHHH
Q psy8497 254 -KKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLANAN-------------------FG----AEYLSGAQDQKARLAS 307 (2355)
Q Consensus 254 -eaLLqLLe--rl~kgRVLVFSQTRKmAEiLADyLrErG-------------------IK----VarLHGgMSqEERqeI 307 (2355)
..+...+. .....++++.+.+++.+..+.+.+.... +. ....|.. ....+...
T Consensus 505 a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 583 (962)
T COG0610 505 AKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKKDL 583 (962)
T ss_pred HHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHhhh
Confidence 11111111 1223477777777774444443332210 00 0000111 12233344
Q ss_pred HHHH--hCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC--C--CccEEEEEEc
Q psy8497 308 LDSF--KRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY--G--TRGLVITIVS 370 (2355)
Q Consensus 308 LErF--RSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi--G--QkGkVIVLVS 370 (2355)
..+| ....+++||.++++-.|+|.|.+.++. +|-|.-.+.++|++.|+.|. + ..|.++-|+.
T Consensus 584 ~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 584 IKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 4553 356789999999999999999998765 78888999999999999995 3 2355555554
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.76 E-value=3.2e-08 Score=106.36 Aligned_cols=134 Identities=15% Similarity=0.186 Sum_probs=77.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+.-.+|...+|+|||.-.+..++.... ..+.++|||.||+.++..+.+.++.. ++++.. ..-.......
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i---~~~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t---~~~~~~~~g~ 72 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAI---KRRLRVLVLAPTRVVAEEMYEALKGL-----PVRFHT---NARMRTHFGS 72 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHH---HTT--EEEEESSHHHHHHHHHHTTTS-----SEEEES---TTSS----SS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHH---HccCeEEEecccHHHHHHHHHHHhcC-----CcccCc---eeeeccccCC
Confidence 344688999999999766655554333 25789999999999977777766543 222221 1110111223
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC--hHHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG--FVEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G--F~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
.-|-|+|+..+...+.. ......|++||+||+|..-... +...+... ... ....+|+|||||+-.
T Consensus 73 ~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPPGS 139 (148)
T ss_dssp SSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT-
T ss_pred CcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCC
Confidence 45889999998777655 5567899999999999743222 11222222 222 246799999999854
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.74 E-value=1.1e-07 Score=110.80 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHH----HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC--CCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPY----VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV--QQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 43 eLRPYQeEALn~----LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~--qggRVLILVPTRALAqQ~anwLREF 113 (2355)
.++|.|.+.+.. +..+.++||.+|||+|||++++++++.++..... ...+++|+++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 569999995544 4567889999999999999999999887764222 2348999999999988887777665
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.74 E-value=1.1e-07 Score=110.80 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHH----HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC--CCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPY----VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV--QQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 43 eLRPYQeEALn~----LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~--qggRVLILVPTRALAqQ~anwLREF 113 (2355)
.++|.|.+.+.. +..+.++||.+|||+|||++++++++.++..... ...+++|+++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 569999995544 4567889999999999999999999887764222 2348999999999988887777665
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.74 E-value=3e-06 Score=111.27 Aligned_cols=139 Identities=16% Similarity=0.228 Sum_probs=84.9
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH-----HHhc-ccC--CcEEEEEECCcc-
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR-----SVGA-HVK--NLHVDYFIGGTQ- 130 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR-----EFgk-~AP--gLrVVvytGGkq- 130 (2355)
++.+.++||+|||.+|+-.|+..... ....++|||||+.++.+.+.+.+. ..+. ... .+.+-++.+...
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~--~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQK--YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 68999999999999999888766553 345789999999999877665554 1111 111 244445554320
Q ss_pred --------cc---------CCCCCCcEEEECHHHHHHHHH--hh--cc----cCcCc-------eEEEecccchhcccCh
Q psy8497 131 --------VE---------RPKRPVQIVVGSPGRIKQMIK--LK--YL----NMDSV-------RLFIMDEADKLINTGF 178 (2355)
Q Consensus 131 --------~r---------kqirq~DILVTTPErLLDLLd--rr--~L----dLSkI-------dLLIVDEAHRLkN~GF 178 (2355)
.. .......|+|+|.++|..-.. .. .+ .-..| -+||+||.|++....
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~- 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN- 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch-
Confidence 00 011137899999998754211 00 00 00111 279999999985432
Q ss_pred HHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 179 VEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 179 ~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
..+..| ..+.+.+ +|.+|||...
T Consensus 218 -k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 218 -KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred -HHHHHH-HhcCccc-EEEEeeecCC
Confidence 233333 5555444 5679999875
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.65 E-value=8.3e-07 Score=114.47 Aligned_cols=322 Identities=16% Similarity=0.190 Sum_probs=188.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.++.+|.-+.-. -....|.-+-||-|||+++++|+.-... .+..+.||...--|+.--.+|+..+..++ ++.|
T Consensus 80 ~~~dVQliG~i~--lh~g~iaEM~TGEGKTL~atlp~ylnaL----~gkgVhvVTvNdYLA~RDae~m~~l~~~L-Glsv 152 (822)
T COG0653 80 RHFDVQLLGGIV--LHLGDIAEMRTGEGKTLVATLPAYLNAL----AGKGVHVVTVNDYLARRDAEWMGPLYEFL-GLSV 152 (822)
T ss_pred ChhhHHHhhhhh--hcCCceeeeecCCchHHHHHHHHHHHhc----CCCCcEEeeehHHhhhhCHHHHHHHHHHc-CCce
Confidence 445555554443 3445699999999999999988754332 36678999999999999999999999998 9999
Q ss_pred EEEECCccccC--CCCCCcEEEECHHHHH-HHHHh------hcccCcCceEEEecccchhc-c---------c------C
Q psy8497 123 DYFIGGTQVER--PKRPVQIVVGSPGRIK-QMIKL------KYLNMDSVRLFIMDEADKLI-N---------T------G 177 (2355)
Q Consensus 123 VvytGGkq~rk--qirq~DILVTTPErLL-DLLdr------r~LdLSkIdLLIVDEAHRLk-N---------~------G 177 (2355)
.+...+..... ..-.++|..+|-..|- +.+.. .........+.||||++-++ + . .
T Consensus 153 G~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~ 232 (822)
T COG0653 153 GVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSE 232 (822)
T ss_pred eeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCch
Confidence 88877764332 2233899999976431 22211 11224567788999998653 1 1 1
Q ss_pred hHHHHHHHHHhCCCC--------ceEEEEEec--------------cChh-------HHHHHH---HhccC-CeeeccCC
Q psy8497 178 FVEDITWIYSQLPPM--------KQMLVVSAT--------------YSHD-------NLATLQ---KYMVD-PLLIRPED 224 (2355)
Q Consensus 178 F~SrLeeILs~Lppn--------rQILLLSAT--------------LS~E-------ILElLk---KfLrd-PvIIrVes 224 (2355)
.+..+..++..+... .+.|.+|-. ...+ +.+.+. .+..+ .++++...
T Consensus 233 ~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~e 312 (822)
T COG0653 233 LYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGE 312 (822)
T ss_pred HHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCe
Confidence 244455555444322 122222220 0000 000110 00011 01100000
Q ss_pred -------Cc------------------------------------------------------cccccceEE----EEec
Q psy8497 225 -------AT------------------------------------------------------RPLLGVKQL----VALI 239 (2355)
Q Consensus 225 -------ee------------------------------------------------------~~~seVrQv----VvqV 239 (2355)
.. ........+ +..+
T Consensus 313 v~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~i 392 (822)
T COG0653 313 VVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVI 392 (822)
T ss_pred EEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeec
Confidence 00 000011111 1111
Q ss_pred c---------CCCCCcchhhhHHHHHHHHHh--cCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHH
Q psy8497 240 P---------ECKNPSLRYVDEEKKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASL 308 (2355)
Q Consensus 240 p---------e~kn~sLt~lsKkeaLLqLLe--rl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeIL 308 (2355)
| .....+.....+..+++..+. ...+.+|||-+.+++..+.+...|.+.|+...+|...-...|-..+.
T Consensus 393 PTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia 472 (822)
T COG0653 393 PTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIA 472 (822)
T ss_pred cCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHh
Confidence 1 111111222233333333322 23456999999999999999999999999998888876644444433
Q ss_pred HHHhCCCc-cEEEEecccccccCCCCcc-----------EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 309 DSFKRGKV-RILVTTDLAARGIDAANVD-----------LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 309 ErFRSGEI-dVLVSTSALGEGLDLPaVD-----------TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
. .|.. .|-|||+++++|-||.--. .||-..-.-|..-+-|..||+||.|.+|....|++-.+.
T Consensus 473 ~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~ 547 (822)
T COG0653 473 Q---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDD 547 (822)
T ss_pred h---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHH
Confidence 3 3433 5889999999999974322 355455555777788999999999999988887765443
No 172
>KOG0921|consensus
Probab=98.61 E-value=2.2e-07 Score=117.99 Aligned_cols=322 Identities=16% Similarity=0.194 Sum_probs=179.2
Q ss_pred HHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCe-EEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEE
Q psy8497 48 QMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQ-TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFI 126 (2355)
Q Consensus 48 QeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggR-VLILVPTRALAqQ~anwLREFgk~APgLrVVvyt 126 (2355)
-.+.++.+....-+||-++||+|||..+..-||+.+.+.....-. +.+.-|++..+.-+.+.+..--....+-.|+.-.
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~v 462 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNV 462 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccc
Confidence 334445555556689999999999999888889888765443333 3444477665555555444321111011111110
Q ss_pred CCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc-ccChHHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 127 GGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI-NTGFVEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 127 GGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk-N~GF~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
--... .....--|+.+|-+-++.++... +..+.++|+||+|..- +..|...+..-+........++++|||+..+
T Consensus 463 Rf~Sa-~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd 538 (1282)
T KOG0921|consen 463 RFDSA-TPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTD 538 (1282)
T ss_pred ccccc-ccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchh
Confidence 00000 00111348889999888777654 3456699999999643 2223332222222223344556666655432
Q ss_pred HH--------------------HHHHHhccCCeeeccCCCc-----------ccccc-c-eEEEEeccCCCCCc------
Q psy8497 206 NL--------------------ATLQKYMVDPLLIRPEDAT-----------RPLLG-V-KQLVALIPECKNPS------ 246 (2355)
Q Consensus 206 IL--------------------ElLkKfLrdPvIIrVesee-----------~~~se-V-rQvVvqVpe~kn~s------ 246 (2355)
.+ .+....+..+...-+.... ..... . +..-..+.......
T Consensus 539 ~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~ 618 (1282)
T KOG0921|consen 539 LFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMS 618 (1282)
T ss_pred hhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhh
Confidence 21 1111111111111110000 00000 0 00000000000000
Q ss_pred -----chhhhHHHHHHHHHh-cCCCCeEEEEEcccccHHHHHHHHHhc-------CCccEEeeCCCCHHHHHHHHHHHhC
Q psy8497 247 -----LRYVDEEKKLVQLLS-QTPFNQCVIFSNYQLRPEVICENLANA-------NFGAEYLSGAQDQKARLASLDSFKR 313 (2355)
Q Consensus 247 -----Lt~lsKkeaLLqLLe-rl~kgRVLVFSQTRKmAEiLADyLrEr-------GIKVarLHGgMSqEERqeILErFRS 313 (2355)
.......++|+..+. ..-.+-||||.+-...+..|..+|... .+.+..+|+.+...+..++.+....
T Consensus 619 ~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~ 698 (1282)
T KOG0921|consen 619 RLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE 698 (1282)
T ss_pred cchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc
Confidence 011122233333222 222357999999999999998888763 3677889999888888888888888
Q ss_pred CCccEEEEecccccccCCCCccEEEEecCC-----------------C-CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 314 GKVRILVTTDLAARGIDAANVDLVINLEIP-----------------H-DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 314 GEIdVLVSTSALGEGLDLPaVDTVIIyDSP-----------------~-SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|.+++|++|.+....|-+-++..||..+.- | +..+.+|+-||++|. ++|.+..++...-.
T Consensus 699 gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF 776 (1282)
T KOG0921|consen 699 GVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARF 776 (1282)
T ss_pred cccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHHH
Confidence 999999999999999988877777643322 1 677889999999994 77888877765433
No 173
>KOG2340|consensus
Probab=98.56 E-value=2.4e-06 Score=105.14 Aligned_cols=337 Identities=17% Similarity=0.213 Sum_probs=202.4
Q ss_pred CCCcHHHHHHHHHHHcCCcEEE-EccCCchH--HHHHHHHHHHHHHhc---------------------------CCCCC
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIV-QSKSGTGK--SIVFVVAALNKLIKL---------------------------PVQQP 91 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVIL-AAPTGSGK--TLVALIAILerL~ek---------------------------r~qgg 91 (2355)
..|++.|.+.+..+.+-++++. ..-++.|+ +-+|++-++.++.+. --..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 4899999999999998888654 34445566 346666666665531 01246
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEE---------EEEEC---------------------CccccCC-------
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHV---------DYFIG---------------------GTQVERP------- 134 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrV---------VvytG---------------------Gkq~rkq------- 134 (2355)
+||||||+++.|..+.+.+..++.....-.. .-|.| .....-.
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999999998887332211010 11111 1111000
Q ss_pred --------CCCCcEEEECHHHHHHHHH------hhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCC--------
Q psy8497 135 --------KRPVQIVVGSPGRIKQMIK------LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM-------- 192 (2355)
Q Consensus 135 --------irq~DILVTTPErLLDLLd------rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppn-------- 192 (2355)
....+||||+|=-|.-++. +.+-.++.|.++|||-+|.++...| ..+..++.+|...
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCC
Confidence 0116899999987655554 1333478899999999998875543 4455555554321
Q ss_pred ----------------ceEEEEEeccChhHHHHHHHhccCC---eeeccCC----CccccccceEEEEeccCCC---CCc
Q psy8497 193 ----------------KQMLVVSATYSHDNLATLQKYMVDP---LLIRPED----ATRPLLGVKQLVALIPECK---NPS 246 (2355)
Q Consensus 193 ----------------rQILLLSATLS~EILElLkKfLrdP---vIIrVes----ee~~~seVrQvVvqVpe~k---n~s 246 (2355)
.|+|++|+--.+....++..++.+. +..+.-. .......+.|+...+.... ...
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 2556666654444444444443221 1111111 1111112222221111100 000
Q ss_pred chhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-
Q psy8497 247 LRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA- 325 (2355)
Q Consensus 247 Lt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL- 325 (2355)
..+.--...++--+.......+|||.++--..-.+..+|++..+.+..|+.-.+...-.++-..|-.|...|||-|.-+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 1111111222222222234578999999999999999999999988888877777776777788999999999999543
Q ss_pred -ccccCCCCccEEEEecCCCCHhHH---HHHhhccCCCC----CccEEEEEEcccCHHHHHH
Q psy8497 326 -ARGIDAANVDLVINLEIPHDAATY---LHRMGRAGRYG----TRGLVITIVSAESLVKFHS 379 (2355)
Q Consensus 326 -GEGLDLPaVDTVIIyDSP~SPqSY---IQRIGRAGRiG----QkGkVIVLVSsdDVEeIEs 379 (2355)
-+-.+|..|.-||+|.+|.+|+-| +.+++|+.-.| ....|.++++.-+.-.++.
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ 675 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLEN 675 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHH
Confidence 356678889999999999999765 56666665433 2345666666655444443
No 174
>KOG0952|consensus
Probab=98.47 E-value=4e-08 Score=126.50 Aligned_cols=265 Identities=14% Similarity=0.185 Sum_probs=157.7
Q ss_pred CCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 43 KESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
...|.|.+.+--++. ..++++.+|||+|||+++.++++..+.. .+..+++||+|..+|+..-.+...+.. ..++++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~--~p~~kvvyIap~kalvker~~Dw~~r~-~~~g~k 1003 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY--YPGSKVVYIAPDKALVKERSDDWSKRD-ELPGIK 1003 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc--CCCccEEEEcCCchhhcccccchhhhc-ccCCce
Confidence 444555555544443 3468999999999999999999988775 445889999999999876555444432 234899
Q ss_pred EEEEECCcccc-CCCCCCcEEEECHHHHHHHHH--hhcccCcCceEEEecccchhcccChHHHHHH-------HHHhCCC
Q psy8497 122 VDYFIGGTQVE-RPKRPVQIVVGSPGRIKQMIK--LKYLNMDSVRLFIMDEADKLINTGFVEDITW-------IYSQLPP 191 (2355)
Q Consensus 122 VVvytGGkq~r-kqirq~DILVTTPErLLDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF~SrLee-------ILs~Lpp 191 (2355)
++-.+|+.... ......+|+|+||+++..... .....+.++.+||+||.|.+... +...++. +-...+.
T Consensus 1004 ~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~t~~ 1082 (1230)
T KOG0952|consen 1004 VIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQTEE 1082 (1230)
T ss_pred eEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccccCc
Confidence 99999987665 445568999999999877665 34456788999999999987754 2222222 2223344
Q ss_pred CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEE
Q psy8497 192 MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIF 271 (2355)
Q Consensus 192 nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVF 271 (2355)
..+++++|.-+.. ...+..++.....+..... ....+++..+.-++...............+..+....+...+|||
T Consensus 1083 ~vr~~glsta~~n--a~dla~wl~~~~~~nf~~s-vrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lif 1159 (1230)
T KOG0952|consen 1083 PVRYLGLSTALAN--ANDLADWLNIKDMYNFRPS-VRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIF 1159 (1230)
T ss_pred chhhhhHhhhhhc--cHHHHHHhCCCCcCCCCcc-cccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEE
Confidence 5677777655442 2334444443222111111 111122222222333111111122233555556666677799999
Q ss_pred EcccccH----HHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCc
Q psy8497 272 SNYQLRP----EVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316 (2355)
Q Consensus 272 SQTRKmA----EiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEI 316 (2355)
+.++++. ..|...+....-...+++ |+..+-+.++..-++...
T Consensus 1160 v~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1160 VSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTNL 1206 (1230)
T ss_pred eecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccch
Confidence 9877654 334444433333344444 335566666666555443
No 175
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.21 E-value=2.2e-05 Score=102.75 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=59.3
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
..|++.||..|..-+....+.+..+..|||||||++....-+..+..++....+..-|.+|||.|..
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 4699999999988777888999999999999999999888788888888888888889999998764
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.15 E-value=2.4e-05 Score=83.99 Aligned_cols=69 Identities=17% Similarity=0.339 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHH-----hcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLI-----KLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~-----ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
+|.+.|.+|+..++.... ++|.+|.|+|||.+.. .++..+. .....+.++||++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478999999999999988 9999999999995444 4444441 1135678899999999999988888887
No 177
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.14 E-value=3e-05 Score=91.89 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=105.9
Q ss_pred CCCcHHHHHHHHHHHc----------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 42 VKESPIQMAAFPYVLN----------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
..|...|.+++-.+.+ +...+|.+.||.||--+....|+..+.+ ...+.|+|..+..|.....+.++
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---Gr~r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR---GRKRAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---CCCceEEEECChhhhhHHHHHHH
Confidence 3689999999977653 2358999999999987766666666553 34569999999999999999999
Q ss_pred HHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh-----hc----ccC---cCceEEEecccchhcccCh-
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL-----KY----LNM---DSVRLFIMDEADKLINTGF- 178 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr-----r~----LdL---SkIdLLIVDEAHRLkN~GF- 178 (2355)
.++.. .+.+..+..-...........||++||..|...... .. +.| ..-.+||+||||.+++..-
T Consensus 113 DIG~~--~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~ 190 (303)
T PF13872_consen 113 DIGAD--NIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSG 190 (303)
T ss_pred HhCCC--cccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCcc
Confidence 88654 233333332211111122367999999998766421 01 011 1224899999999887532
Q ss_pred -------HHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 179 -------VEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 179 -------~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
...+..+-..+| ..+++++|||...+
T Consensus 191 ~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 191 SKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred CccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 234444555564 66799999997643
No 178
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.11 E-value=1.8e-05 Score=92.44 Aligned_cols=128 Identities=16% Similarity=0.249 Sum_probs=93.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|++.|.-++=.|..|+ |+...||-|||+++.++++.... .+..|-||+.+..|+..=.+|+..++..+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL----~G~~V~vvT~NdyLA~RD~~~~~~~y~~L- 145 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL----QGKGVHVVTSNDYLAKRDAEEMRPFYEFL- 145 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT----TSS-EEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH----hcCCcEEEeccHHHhhccHHHHHHHHHHh-
Confidence 565 89999999998776665 99999999999987766654433 37789999999999999999999999888
Q ss_pred CcEEEEEECCccccC--CCCCCcEEEECHHHHH-HHHHhh------cccCcCceEEEecccchhc
Q psy8497 119 NLHVDYFIGGTQVER--PKRPVQIVVGSPGRIK-QMIKLK------YLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--qirq~DILVTTPErLL-DLLdrr------~LdLSkIdLLIVDEAHRLk 174 (2355)
++.+..+..+..... ..-.++|+++|...|. +++... ....+.+.++||||++.++
T Consensus 146 Glsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999998765321 1223789999998764 444431 1124678899999999754
No 179
>KOG1133|consensus
Probab=97.90 E-value=0.0063 Score=78.15 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=75.8
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC-------ccEEeeCCCCHHHHHHHHHHHhC----CCccEEEEe--cc
Q psy8497 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANF-------GAEYLSGAQDQKARLASLDSFKR----GKVRILVTT--DL 324 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTRKmAEiLADyLrErGI-------KVarLHGgMSqEERqeILErFRS----GEIdVLVST--SA 324 (2355)
.+....+ +-|++|+++-+-+..+.+.+...|+ +.+++-.... -..+++.|.. |.-.+|+|. --
T Consensus 623 nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGK 698 (821)
T KOG1133|consen 623 NLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGK 698 (821)
T ss_pred HHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 3333444 6899999999999999999887653 2233333222 3456666653 454677776 45
Q ss_pred cccccCCCC--ccEEEEecCCCC--------------------------------HhHHHHHhhccCCCCCccEEEEEEc
Q psy8497 325 AARGIDAAN--VDLVINLEIPHD--------------------------------AATYLHRMGRAGRYGTRGLVITIVS 370 (2355)
Q Consensus 325 LGEGLDLPa--VDTVIIyDSP~S--------------------------------PqSYIQRIGRAGRiGQkGkVIVLVS 370 (2355)
+.+|||+.+ ++.||.+.+|+. ....-|.||||-|--++.-+|++++
T Consensus 699 lSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 699 LSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred cccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 689999987 688998998873 1234599999999777777777775
Q ss_pred c
Q psy8497 371 A 371 (2355)
Q Consensus 371 s 371 (2355)
.
T Consensus 779 ~ 779 (821)
T KOG1133|consen 779 K 779 (821)
T ss_pred h
Confidence 4
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.87 E-value=3.6e-05 Score=83.24 Aligned_cols=112 Identities=26% Similarity=0.334 Sum_probs=78.5
Q ss_pred HHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC--ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec--ccccccCCC
Q psy8497 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANF--GAEYLSGAQDQKARLASLDSFKRGKVRILVTTD--LAARGIDAA 332 (2355)
Q Consensus 257 LqLLerl~kgRVLVFSQTRKmAEiLADyLrErGI--KVarLHGgMSqEERqeILErFRSGEIdVLVSTS--ALGEGLDLP 332 (2355)
.+++...+ +.+|||+++.+.++.+.+.|..... .+..+.- ...++..+++.|+.+.-.||+++. .+.+|||+|
T Consensus 2 ~~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 44555554 7999999999999999999987542 2222332 356788999999999999999998 999999999
Q ss_pred C--ccEEEEecCCCC----H--------------------------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 333 N--VDLVINLEIPHD----A--------------------------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 333 a--VDTVIIyDSP~S----P--------------------------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
. +.+||+...|+. + ....|++||+-|...+--++++++.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 7 778999999962 1 2346999999997777777777655
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.84 E-value=7.2e-05 Score=82.92 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=72.1
Q ss_pred CCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
+|++-|.+++..++... -++|.++.|+|||.+ +..+...+.. .+.++++++||...+..+.+... +
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~---~g~~v~~~apT~~Aa~~L~~~~~--------~ 68 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA---AGKRVIGLAPTNKAAKELREKTG--------I 68 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH---TT--EEEEESSHHHHHHHHHHHT--------S
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh---CCCeEEEECCcHHHHHHHHHhhC--------c
Confidence 47899999999997654 378889999999964 4445555553 35889999999988665444421 1
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcc----cCcCceEEEecccchhcccChHHHHHHHHHhCCC-CceE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYL----NMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP-MKQM 195 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~L----dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp-nrQI 195 (2355)
. ..|...++........ .+...++|||||+-++.. ..+..++...+. ..++
T Consensus 69 ~--------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ll~~~~~~~~kl 124 (196)
T PF13604_consen 69 E--------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLARLLRLAKKSGAKL 124 (196)
T ss_dssp ---------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHHHHHHS-T-T-EE
T ss_pred c--------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHHHHHHHHhcCCEE
Confidence 1 2222222111111000 145567999999997653 445666666655 5677
Q ss_pred EEEEec
Q psy8497 196 LVVSAT 201 (2355)
Q Consensus 196 LLLSAT 201 (2355)
|++.-+
T Consensus 125 ilvGD~ 130 (196)
T PF13604_consen 125 ILVGDP 130 (196)
T ss_dssp EEEE-T
T ss_pred EEECCc
Confidence 776654
No 182
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.75 E-value=0.00066 Score=88.05 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=43.3
Q ss_pred CCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCC
Q psy8497 314 GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY 359 (2355)
Q Consensus 314 GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRi 359 (2355)
...++|++--+|.+|.|=|+|=+++-+....|..+=+|-+||..|.
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 4578999999999999999999999999999999999999999995
No 183
>KOG1802|consensus
Probab=97.57 E-value=0.00026 Score=89.50 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=69.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 33 RQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 33 LK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
=+.+...++++|..-|..|+..+++..=.||++|.|+|||++.. .|+..|.+ ...++|||++|+-..+.|+.+.+.+
T Consensus 400 P~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~--~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 400 PRRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR--QHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred chhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHH--hcCCceEEEcccchhHHHHHHHHHh
Confidence 34566688999999999999999999889999999999997655 44445553 3578899999999999999999988
Q ss_pred HhcccCCcEEEEEE
Q psy8497 113 VGAHVKNLHVDYFI 126 (2355)
Q Consensus 113 Fgk~APgLrVVvyt 126 (2355)
. +++|+-+.
T Consensus 477 t-----gLKVvRl~ 485 (935)
T KOG1802|consen 477 T-----GLKVVRLC 485 (935)
T ss_pred c-----CceEeeee
Confidence 7 35555444
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.52 E-value=8.5e-05 Score=84.12 Aligned_cols=140 Identities=20% Similarity=0.249 Sum_probs=71.8
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
+...+..|..++..|+...-+++.+|.|+|||++++.+++..+.. ..-.+++|+-|.... -+++ .++|+-
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~--g~~~kiii~Rp~v~~----~~~l----GflpG~ 71 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE--GEYDKIIITRPPVEA----GEDL----GFLPGD 71 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT--TS-SEEEEEE-S--T----T--------SS---
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh--CCCcEEEEEecCCCC----cccc----ccCCCC
Confidence 456789999999999977779999999999999999999988875 455678888887654 1111 111110
Q ss_pred EEEE--------------EECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHH
Q psy8497 121 HVDY--------------FIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIY 186 (2355)
Q Consensus 121 rVVv--------------ytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeIL 186 (2355)
---- +.+............|-+.+...+. ...+ ...+||||||+.+. ...+..++
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iR------Grt~-~~~~iIvDEaQN~t----~~~~k~il 140 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIR------GRTF-DNAFIIVDEAQNLT----PEELKMIL 140 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGT------T--B--SEEEEE-SGGG------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhc------Cccc-cceEEEEecccCCC----HHHHHHHH
Confidence 0000 0000000000111223333332220 1111 13689999999764 36778888
Q ss_pred HhCCCCceEEEEEec
Q psy8497 187 SQLPPMKQMLVVSAT 201 (2355)
Q Consensus 187 s~LppnrQILLLSAT 201 (2355)
..+....++|++.-.
T Consensus 141 TR~g~~skii~~GD~ 155 (205)
T PF02562_consen 141 TRIGEGSKIIITGDP 155 (205)
T ss_dssp TTB-TT-EEEEEE--
T ss_pred cccCCCcEEEEecCc
Confidence 888888888876654
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.44 E-value=0.00041 Score=82.87 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=60.9
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
+||.+..|+|||++++-. +..+. ....+..+++|++...|...+...+.... .......
T Consensus 4 ~~I~G~aGTGKTvla~~l-~~~l~-~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-------------------~~~~~~~ 62 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNL-AKELQ-NSEEGKKVLYLCGNHPLRNKLREQLAKKY-------------------NPKLKKS 62 (352)
T ss_pred EEEEecCCcCHHHHHHHH-HHHhh-ccccCCceEEEEecchHHHHHHHHHhhhc-------------------ccchhhh
Confidence 788999999999877644 44441 12457789999999999766666665432 0001223
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
.+..+..+...+.........+++|||||||+|..
T Consensus 63 ~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 63 DFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 34455445433322223467889999999999987
No 186
>KOG0298|consensus
Probab=97.43 E-value=0.00028 Score=93.93 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=92.7
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHh--------------cCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC-cEE
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIK--------------LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN-LHV 122 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~e--------------kr~qggRVLILVPTRALAqQ~anwLREFgk~APg-LrV 122 (2355)
++.++++.+||.|||..-+...+..+.+ ....-+.+|||||..-| .+|+.++...++. +.|
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl----~QW~~EI~kH~~~~lKv 449 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAIL----MQWFEEIHKHISSLLKV 449 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHH----HHHHHHHHHhccccceE
Confidence 4568999999999998766555433221 12234679999999666 4455555555544 477
Q ss_pred EEEECCccccC----CCCCCcEEEECHHHHHHHHHhhc--------------cc----C--cCceEEEecccchhcccCh
Q psy8497 123 DYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKY--------------LN----M--DSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 123 VvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~--------------Ld----L--SkIdLLIVDEAHRLkN~GF 178 (2355)
..|.|-...-. ....+|||||||+.|..-+.... +. + -.|=-||||||+++-..
T Consensus 450 ~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess-- 527 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS-- 527 (1394)
T ss_pred EEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--
Confidence 77877654332 23449999999999876554310 00 0 01113899999987653
Q ss_pred HHHHHHHHHhCCCCceEEEEEeccChhHH
Q psy8497 179 VEDITWIYSQLPPMKQMLVVSATYSHDNL 207 (2355)
Q Consensus 179 ~SrLeeILs~LppnrQILLLSATLS~EIL 207 (2355)
.+...+++..++ ....-++|+||...+.
T Consensus 528 sS~~a~M~~rL~-~in~W~VTGTPiq~Id 555 (1394)
T KOG0298|consen 528 SSAAAEMVRRLH-AINRWCVTGTPIQKID 555 (1394)
T ss_pred HHHHHHHHHHhh-hhceeeecCCchhhhh
Confidence 366777777775 3445789999887743
No 187
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.40 E-value=0.0011 Score=85.11 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=89.7
Q ss_pred CcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc-CCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 44 ESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL-PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 44 LRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek-r~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
..++|+.|+...+..+-+||.++.|+|||.+. ..++..+.+. .....++++++||--.+..+.+.+.......+ +
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~-~-- 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLP-L-- 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccc-c--
Confidence 45899999999999888999999999999553 3444444431 12345788999999998877776654332220 0
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHH------hhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEE
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIK------LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQML 196 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLd------rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQIL 196 (2355)
.. ........-..|-.+|+.... ........+++|||||+-++- ...+..++..+++..++|
T Consensus 229 ---~~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~rlI 296 (615)
T PRK10875 229 ---TD-----EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHARVI 296 (615)
T ss_pred ---ch-----hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCEEE
Confidence 00 000011122345444432211 111123456899999999753 256677888899999999
Q ss_pred EEEec
Q psy8497 197 VVSAT 201 (2355)
Q Consensus 197 LLSAT 201 (2355)
++.-.
T Consensus 297 lvGD~ 301 (615)
T PRK10875 297 FLGDR 301 (615)
T ss_pred Eecch
Confidence 87753
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.31 E-value=0.0024 Score=83.49 Aligned_cols=128 Identities=20% Similarity=0.113 Sum_probs=81.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
.++ .|.+-|.+|+..+...+-+||.++.|+|||.+. -.++..+.. ......+++++||-..+..+. +..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~----e~~---- 388 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEE-LGGLLPVGLAAPTGRAAKRLG----EVT---- 388 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHH-cCCCceEEEEeCchHHHHHHH----Hhc----
Confidence 444 899999999999988888999999999999553 355555542 111257888999988865433 221
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh-----hcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCc
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL-----KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr-----r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppnr 193 (2355)
+.. ..|..+|+..... ..-.....++|||||++++.. ..+..++..++...
T Consensus 389 g~~--------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~ 444 (720)
T TIGR01448 389 GLT--------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDHA 444 (720)
T ss_pred CCc--------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhCCCCC
Confidence 100 1222222211000 001124567999999998753 34566677788888
Q ss_pred eEEEEEec
Q psy8497 194 QMLVVSAT 201 (2355)
Q Consensus 194 QILLLSAT 201 (2355)
++|++.-+
T Consensus 445 rlilvGD~ 452 (720)
T TIGR01448 445 RLLLVGDT 452 (720)
T ss_pred EEEEECcc
Confidence 98887653
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.30 E-value=0.0012 Score=77.60 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=88.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH----------
Q psy8497 33 RQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI---------- 102 (2355)
Q Consensus 33 LK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL---------- 102 (2355)
+....-+++...+..|...+.++.....+++.+|+|+|||+.++..++..+.. ..-.+++|+=|....
T Consensus 49 ~~~~~~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~--~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 49 RDSRDTSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH--KDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred hhhcCCccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCeeEEEEeCCCCCchhhhCcCCCC
Confidence 34444467778899999999999888889999999999999988777766643 223445555565432
Q ss_pred -HHHHHHHHHHHhcccCCcEEEEEECCccccCCC--CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChH
Q psy8497 103 -AVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK--RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFV 179 (2355)
Q Consensus 103 -AqQ~anwLREFgk~APgLrVVvytGGkq~rkqi--rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~ 179 (2355)
.+-+.-|+.-+...+. .+.+........ ..-.|-|.....+ +-..+ .-++||||||+.+.-
T Consensus 127 ~~eK~~p~~~pi~D~L~-----~~~~~~~~~~~~~~~~~~Iei~~l~ym----RGrtl---~~~~vIvDEaqn~~~---- 190 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLV-----RRLGASFMQYCLRPEIGKVEIAPFAYM----RGRTF---ENAVVILDEAQNVTA---- 190 (262)
T ss_pred HHHHHHHHHHHHHHHHH-----HHhChHHHHHHHHhccCcEEEecHHHh----cCCcc---cCCEEEEechhcCCH----
Confidence 1222222222211110 001111111110 1123555554333 21221 236999999997652
Q ss_pred HHHHHHHHhCCCCceEEEEEe
Q psy8497 180 EDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 180 SrLeeILs~LppnrQILLLSA 200 (2355)
..+..++..+....++|++.-
T Consensus 191 ~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 191 AQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHHHHHhhcCCCCEEEEeCC
Confidence 677788888888888776543
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.27 E-value=0.0023 Score=82.02 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC--CCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEE
Q psy8497 46 PIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV--QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVD 123 (2355)
Q Consensus 46 PYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~--qggRVLILVPTRALAqQ~anwLREFgk~APgLrVV 123 (2355)
++|+.++..++..+-+||.++.|+|||.+.. .++..|..... ...++++++||--.+..+.+.+....... ..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l---~~- 222 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL---AA- 222 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc---cc-
Confidence 7999999999999889999999999996533 44444442111 12579999999988777777665533221 00
Q ss_pred EEECCccccCCCCCCcEEEECHHHHHHHHH------hhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 124 YFIGGTQVERPKRPVQIVVGSPGRIKQMIK------LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 124 vytGGkq~rkqirq~DILVTTPErLLDLLd------rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
. . .......+-..|..+|+.... ........+++|||||+=++-. ..+..++..++...++|+
T Consensus 223 --~--~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~al~~~~rlIl 291 (586)
T TIGR01447 223 --A--E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLKALPPNTKLIL 291 (586)
T ss_pred --c--h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHHhcCCCCEEEE
Confidence 0 0 000011122445444432211 1112234678999999997542 456677888888899888
Q ss_pred EEe
Q psy8497 198 VSA 200 (2355)
Q Consensus 198 LSA 200 (2355)
+.-
T Consensus 292 vGD 294 (586)
T TIGR01447 292 LGD 294 (586)
T ss_pred ECC
Confidence 765
No 191
>KOG1803|consensus
Probab=97.12 E-value=0.00065 Score=85.93 Aligned_cols=65 Identities=23% Similarity=0.335 Sum_probs=54.5
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
.|.+-|.+|+.++...++ .+|.+|.|+|||.+....|...+. .+.++||++|+...+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk----~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK----QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH----cCCeEEEEcCchHHHHHHHHHhc
Confidence 788999999999998865 889999999999877766665555 47899999999999888888644
No 192
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.04 E-value=0.0055 Score=71.00 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=71.9
Q ss_pred CCCCCCcHHHHHHHHHHHc---CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 39 NGFVKESPIQMAAFPYVLN---GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLS---GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
.+| .+|+.|.+.+..+.+ +.+.+++.-||.|||.|.+ |++..+.. ....-+.++||. +|..|..+.+..-+.
T Consensus 20 ~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~-Pmla~~LA--dg~~LvrviVpk-~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 20 SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIV-PMLALALA--DGSRLVRVIVPK-ALLEQMRQMLRSRLG 94 (229)
T ss_pred cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHH-HHHHHHHc--CCCcEEEEEcCH-HHHHHHHHHHHHHHH
Confidence 454 789999999999886 4789999999999997755 66665552 223345566665 688898888887554
Q ss_pred ccCCcEEEEEECCccccCC--------------CCCCcEEEECHHHHHHH
Q psy8497 116 HVKNLHVDYFIGGTQVERP--------------KRPVQIVVGSPGRIKQM 151 (2355)
Q Consensus 116 ~APgLrVVvytGGkq~rkq--------------irq~DILVTTPErLLDL 151 (2355)
..-+-.+..+--+...... ...-.|+|+|||.++.+
T Consensus 95 ~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 95 GLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 4434444443332222110 11257999999987644
No 193
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.84 E-value=0.011 Score=79.72 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=79.4
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
..|+ .|++-|.+++..++...+ ++|.+..|+|||.+ +-++...+. ..+..|++++||-..+..+. +-
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e---~~G~~V~~~ApTGkAA~~L~----e~--- 409 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE---AAGYEVRGAALSGIAAENLE----GG--- 409 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH---HcCCeEEEecCcHHHHHHHh----hc---
Confidence 3454 799999999999998655 78999999999965 444544444 24678999999987744332 21
Q ss_pred cCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC-CCCceE
Q psy8497 117 VKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL-PPMKQM 195 (2355)
Q Consensus 117 APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L-ppnrQI 195 (2355)
. ++ --.|...|+.-+......+...++|||||+-++... .+..++... +...++
T Consensus 410 t-Gi--------------------~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~garv 464 (988)
T PRK13889 410 S-GI--------------------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAGAKV 464 (988)
T ss_pred c-Cc--------------------chhhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhhhCCCEE
Confidence 0 11 112333332212222233556789999999976543 333444432 456788
Q ss_pred EEEEec
Q psy8497 196 LVVSAT 201 (2355)
Q Consensus 196 LLLSAT 201 (2355)
|++.=+
T Consensus 465 VLVGD~ 470 (988)
T PRK13889 465 VLVGDP 470 (988)
T ss_pred EEECCH
Confidence 876654
No 194
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.74 E-value=0.022 Score=56.03 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=24.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
+..++|.+|+|+|||..+. .++..+. .....++++....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~-~i~~~~~---~~~~~v~~~~~~~ 57 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR-AIANELF---RPGAPFLYLNASD 57 (151)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHhh---cCCCCeEEEehhh
Confidence 5679999999999995433 4444433 2244566655543
No 195
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.73 E-value=0.012 Score=77.45 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=75.8
Q ss_pred CCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 43 KESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
.|++-|.+++..++.. +-++|.++.|+|||.+ +-+++..+.. .+..+++++||-..+..+.+. . ++.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~---~g~~V~~~ApTg~Aa~~L~~~---~-----g~~ 419 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA---AGYRVIGAALSGKAAEGLQAE---S-----GIE 419 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh---CCCeEEEEeCcHHHHHHHHhc---c-----CCc
Confidence 6899999999999875 4589999999999955 4345544442 467899999998775443321 1 110
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHh-CCCCceEEEEEe
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ-LPPMKQMLVVSA 200 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~-LppnrQILLLSA 200 (2355)
-.|-..+...+......+...++|||||+-++....+ ..++.. .....++|++.=
T Consensus 420 --------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~~----~~Ll~~~~~~~~kliLVGD 475 (744)
T TIGR02768 420 --------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQM----ARVLKEAEEAGAKVVLVGD 475 (744)
T ss_pred --------------------eeeHHHHHhhhccCcccCCCCcEEEEECcccCCHHHH----HHHHHHHHhcCCEEEEECC
Confidence 1232333211222223356788999999998764332 333332 234667777663
No 196
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.72 E-value=0.0042 Score=70.43 Aligned_cols=122 Identities=13% Similarity=0.099 Sum_probs=75.9
Q ss_pred CcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEE
Q psy8497 44 ESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVD 123 (2355)
Q Consensus 44 LRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVV 123 (2355)
|++-|.+++.. ...+++|.|..|+|||.+.+.-++..|........++|+|++|+..+.++.+.+............
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~- 77 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESS- 77 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCT-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccccc-
Confidence 57889999987 667899999999999988776666666654456678999999999999999999886433200000
Q ss_pred EEECCccc-cCCCCCCcEEEECHHHHHHHHHhhcccC--cCceEEEecccc
Q psy8497 124 YFIGGTQV-ERPKRPVQIVVGSPGRIKQMIKLKYLNM--DSVRLFIMDEAD 171 (2355)
Q Consensus 124 vytGGkq~-rkqirq~DILVTTPErLLDLLdrr~LdL--SkIdLLIVDEAH 171 (2355)
..... ........+.|+|...+...+-...... ..-.+-|+|+..
T Consensus 78 ---~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 78 ---DNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ---T-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ---ccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00000 0000114578999887765443322221 123456777776
No 197
>PRK04296 thymidine kinase; Provisional
Probab=96.62 E-value=0.004 Score=68.95 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=55.2
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
.++.+|||+|||..++-.+. .+. ..+.+++|+.|.-.- ......+...+ | ... ..+
T Consensus 5 ~litG~~GsGKTT~~l~~~~-~~~---~~g~~v~i~k~~~d~----~~~~~~i~~~l---------g-~~~------~~~ 60 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAY-NYE---ERGMKVLVFKPAIDD----RYGEGKVVSRI---------G-LSR------EAI 60 (190)
T ss_pred EEEECCCCCHHHHHHHHHHH-HHH---HcCCeEEEEeccccc----cccCCcEecCC---------C-Ccc------cce
Confidence 67899999999966554444 333 236678888663111 00000010000 1 000 112
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
.+...+.+...+.. ....+++|||||+|.+.. ..+..++..+......+++++
T Consensus 61 ~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~~----~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 61 PVSSDTDIFELIEE---EGEKIDCVLIDEAQFLDK----EQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred EeCChHHHHHHHHh---hCCCCCEEEEEccccCCH----HHHHHHHHHHHHcCCeEEEEe
Confidence 33444555544433 245688999999986532 334445555333333445554
No 198
>PRK08181 transposase; Validated
Probab=96.54 E-value=0.026 Score=66.67 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=66.5
Q ss_pred cHHHHHHH----HHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 45 SPIQMAAF----PYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 45 RPYQeEAL----n~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
...|..++ .|+..+.+++|.+|+|+|||..+.. +...+.. .+..++|+ +...|+.++......
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~---~g~~v~f~-~~~~L~~~l~~a~~~-------- 155 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIE---NGWRVLFT-RTTDLVQKLQVARRE-------- 155 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHH---cCCceeee-eHHHHHHHHHHHHhC--------
Confidence 45666665 4666788999999999999976653 3333332 24455554 455564433221100
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCCceEEEEE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~LppnrQILLLS 199 (2355)
.+.+.++.. +..+++|||||++.+.... ....+..++........+|+.|
T Consensus 156 ----------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTS 206 (269)
T PRK08181 156 ----------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITA 206 (269)
T ss_pred ----------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 122222221 3467799999999765433 2345556665543345566666
Q ss_pred eccCh
Q psy8497 200 ATYSH 204 (2355)
Q Consensus 200 ATLS~ 204 (2355)
-.+..
T Consensus 207 N~~~~ 211 (269)
T PRK08181 207 NQPFG 211 (269)
T ss_pred CCCHH
Confidence 55543
No 199
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.53 E-value=0.014 Score=62.87 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCC------ccEEeeCCCCHHHHHHHHHHHhCCC-ccEEEEecccccccCCCC--ccEEEEecCCCC---
Q psy8497 278 PEVICENLANANF------GAEYLSGAQDQKARLASLDSFKRGK-VRILVTTDLAARGIDAAN--VDLVINLEIPHD--- 345 (2355)
Q Consensus 278 AEiLADyLrErGI------KVarLHGgMSqEERqeILErFRSGE-IdVLVSTSALGEGLDLPa--VDTVIIyDSP~S--- 345 (2355)
++.+.+.+...+. ....+.-+....+...+++.|+... ..||++|..+.+|||+|. +.+||+...|+.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 4455555555443 2233444455556788999998654 379999988999999998 578998888862
Q ss_pred ----------------------------HhHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 346 ----------------------------AATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 346 ----------------------------PqSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
...+.|++||+-|...+-.+|++++.
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12346999999997666656666543
No 200
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.53 E-value=0.011 Score=63.69 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=63.0
Q ss_pred cHHHHHHHHHhcCC---ccEEeeCCCCHHHHHHHHHHHhCCCc---cEEEEecc--cccccCCCC--ccEEEEecCCCC-
Q psy8497 277 RPEVICENLANANF---GAEYLSGAQDQKARLASLDSFKRGKV---RILVTTDL--AARGIDAAN--VDLVINLEIPHD- 345 (2355)
Q Consensus 277 mAEiLADyLrErGI---KVarLHGgMSqEERqeILErFRSGEI---dVLVSTSA--LGEGLDLPa--VDTVIIyDSP~S- 345 (2355)
.++.+.+.+...++ ....+.-.....+...+++.|++..- .||+++.- +.+|||+|. +++||+...|+.
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 34555566655433 12222222333355778888886443 68988877 899999998 578999998862
Q ss_pred ---H---------------------------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 346 ---A---------------------------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 346 ---P---------------------------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+ ..+.|++||+-|...+-.+|++++.
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 1 2346999999997777667776654
No 201
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.029 Score=69.35 Aligned_cols=124 Identities=18% Similarity=0.094 Sum_probs=69.8
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHHH-HHHHHHHHHHhcccCCcEEEEEECCccccCCCC
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREIA-VQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRALA-qQ~anwLREFgk~APgLrVVvytGGkq~rkqir 136 (2355)
.+++++|||+|||.+..-.+..........+.++.+|. +.+.-+ .|+..+...+ ++.+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l-----gvpv-------------- 236 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM-----GIPV-------------- 236 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcC-----Ccce--------------
Confidence 47889999999997655433322221112345565555 333333 3333333222 2211
Q ss_pred CCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCC-ceEEEEEeccChhHHHH
Q psy8497 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPM-KQMLVVSATYSHDNLAT 209 (2355)
Q Consensus 137 q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lppn-rQILLLSATLS~EILEl 209 (2355)
.++-+++.+...+.. +..+++||||++.++.... ....+..++....+. ..+|.|+||........
T Consensus 237 ---~~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 237 ---KAIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred ---EeeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 223355556554432 3578899999999876322 345556666655433 46788999998665543
No 202
>PF13245 AAA_19: Part of AAA domain
Probab=96.48 E-value=0.01 Score=58.01 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=41.1
Q ss_pred HHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 51 AFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 51 ALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
++...+.+.. ++|.+|.|+|||.+.+-.+...+......+.++|||+|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3443333334 66799999999966665555554321222778999999999988877777
No 203
>PRK06526 transposase; Provisional
Probab=96.47 E-value=0.015 Score=67.85 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=61.5
Q ss_pred HHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcc
Q psy8497 51 AFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ 130 (2355)
Q Consensus 51 ALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq 130 (2355)
+..|+..+.+++|.+|+|+|||..+...+. .+.. .+.+++++. ...|+.+ +.... .
T Consensus 91 ~~~fi~~~~nlll~Gp~GtGKThLa~al~~-~a~~---~g~~v~f~t-~~~l~~~----l~~~~--~------------- 146 (254)
T PRK06526 91 TLDFVTGKENVVFLGPPGTGKTHLAIGLGI-RACQ---AGHRVLFAT-AAQWVAR----LAAAH--H------------- 146 (254)
T ss_pred cCchhhcCceEEEEeCCCCchHHHHHHHHH-HHHH---CCCchhhhh-HHHHHHH----HHHHH--h-------------
Confidence 346676778999999999999977664443 3332 344555532 2233222 22110 0
Q ss_pred ccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh-HHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 131 VERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF-VEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 131 ~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF-~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
..+.... +. .+..+++|||||+|.+..... ...+..++........+|++|..+...
T Consensus 147 -----------~~~~~~~---l~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 147 -----------AGRLQAE---LV----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred -----------cCcHHHH---HH----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 0111111 11 134568999999997653222 234555554433334577777766544
No 204
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.44 E-value=0.011 Score=72.13 Aligned_cols=142 Identities=15% Similarity=0.244 Sum_probs=86.1
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 37 QENGFVKESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 37 qa~GF~eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..||+.....+|.-|+..|+... =|.+.+.-|+|||+.++.+.+....... .-.++||.=|+..+-+.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpvG~d--------- 291 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPVGED--------- 291 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCcccc---------
Confidence 45899999999999999998764 3888999999999999988888776422 23456666677655211
Q ss_pred cccCCcEEEEEECCccccCCCCC-----------CcEEEECHHHHHHHHHhhcccC----------cCceEEEecccchh
Q psy8497 115 AHVKNLHVDYFIGGTQVERPKRP-----------VQIVVGSPGRIKQMIKLKYLNM----------DSVRLFIMDEADKL 173 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~rkqirq-----------~DILVTTPErLLDLLdrr~LdL----------SkIdLLIVDEAHRL 173 (2355)
+..+-|... ++.... +..-=++-+.|...+.+..+.+ ..-.+||||||+.|
T Consensus 292 -------IGfLPG~eE-eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 292 -------IGFLPGTEE-EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred -------cCcCCCchh-hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 111111111 110000 0111112223333333322211 11248999999987
Q ss_pred cccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 174 INTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 174 kN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
-. ..+..|+...-...+|+++.-
T Consensus 364 Tp----heikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 364 TP----HELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred CH----HHHHHHHHhccCCCEEEEcCC
Confidence 53 678889999888888887543
No 205
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.36 E-value=0.023 Score=57.44 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=12.7
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
++.++|.||+|+|||.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 3458999999999996544
No 206
>KOG1132|consensus
Probab=96.35 E-value=0.016 Score=76.19 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=50.5
Q ss_pred CCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcC-------------------------------
Q psy8497 43 KESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLP------------------------------- 87 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr------------------------------- 87 (2355)
+|++.|..-+..++. ..++++..|||+|||+..+-..|.+.....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 788899887766654 578999999999999876655555443210
Q ss_pred -------CCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 88 -------VQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 88 -------~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
...++++|-.=|-.-..|+.+++++..-.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 01234555556666678888888876433
No 207
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.033 Score=71.09 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=73.4
Q ss_pred EEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH-hcccCCcEEEEEECCcc--------ccC
Q psy8497 63 VQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV-GAHVKNLHVDYFIGGTQ--------VER 133 (2355)
Q Consensus 63 LAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF-gk~APgLrVVvytGGkq--------~rk 133 (2355)
..+.||+|||++....||.+..+ .-..+|+.|....++.-...-+-.- .... -+.-.+.+++.. ...
T Consensus 2 f~matgsgkt~~ma~lil~~y~k---gyr~flffvnq~nilekt~~nftd~~s~ky-lf~e~i~~~d~~i~ikkvn~fse 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK---GYRNFLFFVNQANILEKTKLNFTDSVSSKY-LFSENININDENIEIKKVNNFSE 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh---chhhEEEEecchhHHHHHHhhcccchhhhH-hhhhhhhcCCceeeeeeecccCc
Confidence 45789999999888777766552 2334777776655543332222110 0000 000011112211 111
Q ss_pred CCCCCcEEEECHHHHHHHHHhhccc------CcCce-EEEecccchhccc-------------ChHHHHHHHHHhCCCCc
Q psy8497 134 PKRPVQIVVGSPGRIKQMIKLKYLN------MDSVR-LFIMDEADKLINT-------------GFVEDITWIYSQLPPMK 193 (2355)
Q Consensus 134 qirq~DILVTTPErLLDLLdrr~Ld------LSkId-LLIVDEAHRLkN~-------------GF~SrLeeILs~Lppnr 193 (2355)
......|+++|.+.|...+.+..-. +.... +++-||+|+|-.. .+.+.+...+. -.+..
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~nkd~ 156 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QNKDN 156 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cCCCc
Confidence 2233779999999987666542211 12222 5688999997421 12232222222 23345
Q ss_pred eEEEEEeccChhHHHHHHH
Q psy8497 194 QMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 194 QILLLSATLS~EILElLkK 212 (2355)
-+|.+|||.+ .......+
T Consensus 157 ~~lef~at~~-k~k~v~~k 174 (812)
T COG3421 157 LLLEFSATIP-KEKSVEDK 174 (812)
T ss_pred eeehhhhcCC-ccccHHHH
Confidence 6777899887 33333333
No 208
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.30 E-value=0.01 Score=57.47 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=26.3
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
+..++|.+|+|+|||.+.. .++..+.. ....++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~-~l~~~~~~---~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR-ALARELGP---PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHH-HHHhccCC---CCCCEEEECCEEcc
Confidence 3568999999999995544 33333331 11357888877654
No 209
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.24 E-value=0.046 Score=74.57 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=77.0
Q ss_pred CCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 42 VKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
..|++-|.+++..+... +-++|.++-|+|||.+ +-++...+. ..+.+|+.++|+-..+..+ .+.. ++
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e---~~G~~V~g~ApTgkAA~~L----~e~~----Gi 447 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWE---AAGYRVVGGALAGKAAEGL----EKEA----GI 447 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHH---HcCCeEEEEcCcHHHHHHH----HHhh----CC
Confidence 37999999999988654 4489999999999944 445555544 3577899999998775443 3221 11
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC-CCceEEEEE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-PMKQMLVVS 199 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp-pnrQILLLS 199 (2355)
. -.|...|+..+......+..-++|||||+-++... .+..++.... ...++|++.
T Consensus 448 ~--------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~~----~m~~Ll~~~~~~garvVLVG 503 (1102)
T PRK13826 448 Q--------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVASR----QMALFVEAVTRAGAKLVLVG 503 (1102)
T ss_pred C--------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEEEC
Confidence 1 12322221111112223455679999999976543 3444455443 467788776
Q ss_pred ec
Q psy8497 200 AT 201 (2355)
Q Consensus 200 AT 201 (2355)
-+
T Consensus 504 D~ 505 (1102)
T PRK13826 504 DP 505 (1102)
T ss_pred CH
Confidence 54
No 210
>PRK14974 cell division protein FtsY; Provisional
Probab=96.13 E-value=0.057 Score=65.68 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=76.8
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc---HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT---REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT---RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++.+++|+|||.+.. .+...+.. .+.+++++..- ...+.|+..+...++ +.+.. +...
T Consensus 143 i~~~G~~GvGKTTtia-kLA~~l~~---~g~~V~li~~Dt~R~~a~eqL~~~a~~lg-----v~v~~--~~~g------- 204 (336)
T PRK14974 143 IVFVGVNGTGKTTTIA-KLAYYLKK---NGFSVVIAAGDTFRAGAIEQLEEHAERLG-----VKVIK--HKYG------- 204 (336)
T ss_pred EEEEcCCCCCHHHHHH-HHHHHHHH---cCCeEEEecCCcCcHHHHHHHHHHHHHcC-----Cceec--ccCC-------
Confidence 7789999999996544 33344442 34567666643 355567666666553 22211 0000
Q ss_pred CcEEEECHHH-HHHHHHhhcccCcCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhc
Q psy8497 138 VQIVVGSPGR-IKQMIKLKYLNMDSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM 214 (2355)
Q Consensus 138 ~DILVTTPEr-LLDLLdrr~LdLSkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfL 214 (2355)
..|.. +.+.+... ....+++||||.+.++.. ..+...+..+...+.+..-++.++||...+....+..|.
T Consensus 205 -----~dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 205 -----ADPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred -----CCHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 01111 22222211 124567999999998863 335566777777777777889999998877776666553
No 211
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.98 E-value=0.016 Score=68.85 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=53.8
Q ss_pred HHHHHHhCCCccEEEEecccccccCCCC--------ccEEEEecCCCCHhHHHHHhhccCCCCCcc-EEEEEE
Q psy8497 306 ASLDSFKRGKVRILVTTDLAARGIDAAN--------VDLVINLEIPHDAATYLHRMGRAGRYGTRG-LVITIV 369 (2355)
Q Consensus 306 eILErFRSGEIdVLVSTSALGEGLDLPa--------VDTVIIyDSP~SPqSYIQRIGRAGRiGQkG-kVIVLV 369 (2355)
...+.|.+|+..|+|.+.+++.||.|.+ -++-|.+.+||+....+|..||+||.||.. ..++++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 4567899999999999999999999875 346788999999999999999999999743 344444
No 212
>KOG0298|consensus
Probab=95.95 E-value=0.0069 Score=81.47 Aligned_cols=118 Identities=12% Similarity=0.143 Sum_probs=89.1
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
..++.+--.....++|||++-....+.++..+...++......+ .++-...+..|.. --++||-+..++-|+|+-+
T Consensus 1210 ~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~e 1285 (1394)
T KOG0298|consen 1210 IAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIE 1285 (1394)
T ss_pred HHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHh
Confidence 33344433444569999999999999999888877776655443 3455566777766 3356888899999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEE--EEEcccCHH
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVI--TIVSAESLV 375 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVI--VLVSsdDVE 375 (2355)
+.+|+..++-.|+..-.|++||++|+||+..++ .|+-..+++
T Consensus 1286 A~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvE 1329 (1394)
T KOG0298|consen 1286 ATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVE 1329 (1394)
T ss_pred hhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchH
Confidence 999999999999999999999999999766544 444444443
No 213
>PHA02533 17 large terminase protein; Provisional
Probab=95.87 E-value=0.082 Score=67.76 Aligned_cols=152 Identities=11% Similarity=0.059 Sum_probs=87.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE-
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH- 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr- 121 (2355)
.|.|+|.+.+..+...+-.+|..+=..|||.+..+.++..+.. ..+..+++++|+...+..+.+.++.+....|.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~--~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~ 136 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF--NKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQ 136 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhh
Confidence 6899999999988666667888899999998766444433332 3456899999999999888888887655554321
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC--CceEEEEE
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP--MKQMLVVS 199 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp--nrQILLLS 199 (2355)
..+.......-.......|.+.|-.. ....-....++||||+|.+.+. ...+..+...+.. ..+++++|
T Consensus 137 ~~i~~~~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~~--~e~~~ai~p~lasg~~~r~iiiS 207 (534)
T PHA02533 137 PGIVEWNKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPNF--IDFWLAIQPVISSGRSSKIIITS 207 (534)
T ss_pred cceeecCccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCCH--HHHHHHHHHHHHcCCCceEEEEE
Confidence 11111111000011123343333210 1112334568999999987652 2333333333322 24566666
Q ss_pred eccChh
Q psy8497 200 ATYSHD 205 (2355)
Q Consensus 200 ATLS~E 205 (2355)
+....+
T Consensus 208 Tp~G~n 213 (534)
T PHA02533 208 TPNGLN 213 (534)
T ss_pred CCCchh
Confidence 654433
No 214
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.54 E-value=0.17 Score=63.19 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=68.8
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
+.++|++|||+|||.+....+...... ..+.++++|. |.+. .+.|+..|.+.+. +.+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~--~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-----vp~------------- 281 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALL--YGKKKVALITLDTYRIGAVEQLKTYAKIMG-----IPV------------- 281 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEECCccHHHHHHHHHHHHHHhC-----Cce-------------
Confidence 457889999999997655443333201 1244566555 3332 3344444444332 111
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHH-hCCCCceEEEEEeccChhHHHHHHH
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYS-QLPPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs-~LppnrQILLLSATLS~EILElLkK 212 (2355)
.++.++..+...+.. +..+++||||-+-+.... .....+..++. ...+...+|+++||........+..
T Consensus 282 ----~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~ 352 (424)
T PRK05703 282 ----EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYK 352 (424)
T ss_pred ----EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHH
Confidence 223445555554432 336789999998664322 12344555555 2233455788999988766655443
No 215
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.51 E-value=0.041 Score=71.55 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 42 VKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
..|.+.|.+|+..++.. ..+||.+|+|+|||.+.+ .++..+.. .+.+||+++|+...+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~---~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVK---RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHH---cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46899999999999876 568999999999996655 44434432 3568999999999988888887764
No 216
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.44 E-value=0.063 Score=67.30 Aligned_cols=150 Identities=16% Similarity=0.117 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHc-----C----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 46 PIQMAAFPYVLN-----G----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 46 PYQeEALn~LLS-----G----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
|+|.-.+..++. + +.++|.-|=+-|||......++..|.-....+..++++++++..+..+++.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 688888888773 1 2388889999999976655555444423345678999999999999999999998776
Q ss_pred cCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHH--HhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCce
Q psy8497 117 VKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMI--KLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ 194 (2355)
Q Consensus 117 APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLL--drr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQ 194 (2355)
.|.+....-..-... ....|.......++..+ ......-....++|+||+|.+.+...+..+..-.... ++.+
T Consensus 81 ~~~l~~~~~~~~~~~----~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r-~~pl 155 (477)
T PF03354_consen 81 SPELRKRKKPKIIKS----NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR-PNPL 155 (477)
T ss_pred Chhhccchhhhhhhh----hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC-CCce
Confidence 655542110000000 00111111111110000 1122233456799999999988754444444444433 3455
Q ss_pred EEEEEe
Q psy8497 195 MLVVSA 200 (2355)
Q Consensus 195 ILLLSA 200 (2355)
++++|.
T Consensus 156 ~~~IST 161 (477)
T PF03354_consen 156 IIIIST 161 (477)
T ss_pred EEEEeC
Confidence 555543
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.23 Score=62.32 Aligned_cols=128 Identities=18% Similarity=0.286 Sum_probs=71.9
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
+.++|++|+|+|||......+. .+. ..+.+++++.. .+ ..+.|+..+..... +.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lg-----ipv------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIG-----FEV------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcC-----CcE-------------
Confidence 3578999999999966554443 443 23455665553 33 34455554444321 111
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCCceEEEEEeccChhH-HHHHHHh
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMKQMLVVSATYSHDN-LATLQKY 213 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~LppnrQILLLSATLS~EI-LElLkKf 213 (2355)
+++.++..|.+.+..-. ....+++||||-+=+..... ....+..++....+..-+|.+|||..... ...+..|
T Consensus 300 ----~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 300 ----IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred ----EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 22346776765553211 11257899999987754322 34555555555545545677999877544 4444443
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.27 E-value=0.074 Score=60.01 Aligned_cols=128 Identities=17% Similarity=0.289 Sum_probs=72.3
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++|||+|||.+..-.+. ++... +.++.+|+- .| .-+.|+....+.+. +.+.. -...
T Consensus 4 i~lvGptGvGKTTt~aKLAa-~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~-----vp~~~--~~~~------- 65 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAA-RLKLK---GKKVALISADTYRIGAVEQLKTYAEILG-----VPFYV--ARTE------- 65 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHT-----EEEEE--SSTT-------
T ss_pred EEEECCCCCchHhHHHHHHH-HHhhc---cccceeecCCCCCccHHHHHHHHHHHhc-----cccch--hhcc-------
Confidence 67899999999966554443 43321 555666652 22 44455555555542 22111 0000
Q ss_pred CcEEEECHHH-HHHHHHhhcccCcCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 138 VQIVVGSPGR-IKQMIKLKYLNMDSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTPEr-LLDLLdrr~LdLSkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..|.. +...+.. +....+++|+||-+-+... ......+..++..+.+..-++.++||........+..+
T Consensus 66 -----~~~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 66 -----SDPAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp -----SCHHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred -----hhhHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 01222 2233321 1234578999999987543 23456677777777777778899999998877666554
No 219
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.23 E-value=0.22 Score=50.92 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=25.6
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
++|.+++|+|||.... .++..+. ..+.+++|+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~-~i~~~~~---~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLAL-QLALNIA---TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHH-HHHHHHH---hcCCEEEEEECCcch
Confidence 5889999999996544 4444443 246778888765444
No 220
>KOG1131|consensus
Probab=95.20 E-value=0.061 Score=67.91 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=41.3
Q ss_pred CCCCCCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 39 NGFVKESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
+.|...+|-|.+=.-.+.+ +.++||.+|+|+|||+..+..++.+..+.+....+.||..-|.
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTv 77 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTV 77 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcc
Confidence 3455678888776655543 4569999999999997766666655555444445566655443
No 221
>KOG1513|consensus
Probab=95.18 E-value=0.027 Score=73.06 Aligned_cols=158 Identities=14% Similarity=0.184 Sum_probs=97.3
Q ss_pred CCCCCcHHHHHHHHHHHcCC----------cEEEEccCCchH--HHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHH
Q psy8497 40 GFVKESPIQMAAFPYVLNGY----------DAIVQSKSGTGK--SIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQIT 107 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLSGR----------NVILAAPTGSGK--TLVALIAILerL~ekr~qggRVLILVPTRALAqQ~a 107 (2355)
.-..|...|++++-.+.+.+ ..+|.+..|.|| |++ .+.+-.+|. ..+++|++.-+..|--...
T Consensus 261 ~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvA-giIfeNyLk----GRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 261 DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVA-GIIFENYLK----GRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeE-EEEehhhhc----ccceeEEEEeccccccchh
Confidence 33478899999998877532 367777766666 533 223333443 4678999999999977777
Q ss_pred HHHHHHhcccCCcEEEEEECCccc----c-CCCCCCcEEEECHHHHHHHHHh-------hc-----ccCcCc-eEEEecc
Q psy8497 108 DVVRSVGAHVKNLHVDYFIGGTQV----E-RPKRPVQIVVGSPGRIKQMIKL-------KY-----LNMDSV-RLFIMDE 169 (2355)
Q Consensus 108 nwLREFgk~APgLrVVvytGGkq~----r-kqirq~DILVTTPErLLDLLdr-------r~-----LdLSkI-dLLIVDE 169 (2355)
+.++.++. ++|.|..+.--+-. . ...-.-.||++||..|.--... ++ |.-..+ ++||+||
T Consensus 336 RDL~DigA--~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDE 413 (1300)
T KOG1513|consen 336 RDLRDIGA--TGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDE 413 (1300)
T ss_pred hchhhcCC--CCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehh
Confidence 77777653 35555544321110 0 1111256999999876532221 01 111112 5899999
Q ss_pred cchhccc---------ChHHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 170 ADKLINT---------GFVEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 170 AHRLkN~---------GF~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
||+.++. ....-+..+-..|| ..++++-|||-..+
T Consensus 414 CHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsE 457 (1300)
T KOG1513|consen 414 CHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASE 457 (1300)
T ss_pred hhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCC
Confidence 9998762 13455666666675 78899999986543
No 222
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.18 E-value=0.078 Score=64.49 Aligned_cols=60 Identities=30% Similarity=0.367 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHHH------HcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHH
Q psy8497 43 KESPIQMAAFPYV------LNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQI 106 (2355)
Q Consensus 43 eLRPYQeEALn~L------LSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~ 106 (2355)
+|++-|++++..+ ..+..++|.++-|+|||.++- ++...+. ..+..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~---~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLR---SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhc---cccceEEEecchHHHHHhc
Confidence 4788899999888 456789999999999996543 3333433 2467899999998775444
No 223
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.17 Score=62.54 Aligned_cols=128 Identities=16% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH---HHHHHHHHHHHHHhcccCCcEEEEEECCccccCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR---EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP 134 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR---ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq 134 (2355)
+..++|++|||+|||......+...+.. ....++.+|..-. .-+.|+..+.+.+ ++.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~--~G~~~V~lit~D~~R~ga~EqL~~~a~~~-----gv~~------------ 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR--FGASKVALLTTDSYRIGGHEQLRIFGKIL-----GVPV------------ 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEecccccccHHHHHHHHHHHc-----CCce------------
Confidence 3458899999999997655444333321 1123455544221 1223443333333 1111
Q ss_pred CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh-HHHHHHHHHhCCCCceEEEEEeccChhHHHH-HHH
Q psy8497 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF-VEDITWIYSQLPPMKQMLVVSATYSHDNLAT-LQK 212 (2355)
Q Consensus 135 irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF-~SrLeeILs~LppnrQILLLSATLS~EILEl-LkK 212 (2355)
..+.++..+...+. .+...++|+||.+=+.....+ ...+..+.....+...+|.++||........ +..
T Consensus 198 -----~~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~ 268 (374)
T PRK14722 198 -----HAVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQA 268 (374)
T ss_pred -----EecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHH
Confidence 22333333433332 245568999999976532222 2222222222233456888999988766543 344
Q ss_pred h
Q psy8497 213 Y 213 (2355)
Q Consensus 213 f 213 (2355)
|
T Consensus 269 f 269 (374)
T PRK14722 269 Y 269 (374)
T ss_pred H
Confidence 4
No 224
>KOG1805|consensus
Probab=94.83 E-value=0.039 Score=73.31 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 40 GFVKESPIQMAAFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
-+..|+.-|++|+-.++.-++ .+|.+=.|+|||.+.. .++..|. ..+++||+.+=|-..+..+.-.++.+...+
T Consensus 666 ~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~---~~gkkVLLtsyThsAVDNILiKL~~~~i~~- 740 (1100)
T KOG1805|consen 666 ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILV---ALGKKVLLTSYTHSAVDNILIKLKGFGIYI- 740 (1100)
T ss_pred HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHH---HcCCeEEEEehhhHHHHHHHHHHhccCcce-
Confidence 345889999999999888766 7888889999996544 4444444 357889999998888777776666653222
Q ss_pred CcEEEEEECCcc-cc---------------------CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 119 NLHVDYFIGGTQ-VE---------------------RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 119 gLrVVvytGGkq-~r---------------------kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
+-.|... .. .......||.+|=--+.+. .+..+.|+++|||||-.+..
T Consensus 741 -----lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----lf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 741 -----LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----LFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred -----eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch----hhhccccCEEEEcccccccc
Confidence 1112211 00 1122356777773222222 23456789999999997653
No 225
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.74 E-value=0.11 Score=68.07 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
..|++-|.+++.. ....++|.|..|+|||.+.+.-+...+.........+|+|+.|+..|.++.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~---- 76 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS---- 76 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc----
Confidence 4689999999874 3467999999999999876655554443333456679999999999999999998874210
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhccc-C-cCceEEEecccch
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLN-M-DSVRLFIMDEADK 172 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~Ld-L-SkIdLLIVDEAHR 172 (2355)
...+.|+|...|...+.+.... . ..-.+-|+|+...
T Consensus 77 ---------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ---------------ARGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDDQ 114 (715)
T ss_pred ---------------ccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 1247899998875433322111 0 1123567787654
No 226
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.72 E-value=0.1 Score=56.05 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=33.5
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
++|.+|+|+|||..++-.+...+. .+.+++|+... +-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----~g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----RGEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----CCCcEEEEECC-CCHHHHHHHHHHcC
Confidence 689999999999776655554443 36778888754 44455666666653
No 227
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.63 E-value=0.29 Score=69.89 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=74.4
Q ss_pred CCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHHHHHHHHHHhc-CCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIKL-PVQQPQTIILAPTREIAVQITDVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVALIAILerL~ek-r~qggRVLILVPTRALAqQ~anwLREFgk~APg 119 (2355)
.|++.|.+++..++... -++|.+..|+|||.+ +-.++..+... ...+..++.++||-..+..+. +.+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e~G----- 1036 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----SAG----- 1036 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----hcC-----
Confidence 68999999999999753 489999999999954 33444444321 123567888999988755433 221
Q ss_pred cEEEEEECCccccCCCCCCcEEEECHHHHHHHHH----hhcccCcCceEEEecccchhcccChHHHHHHHHHhCCC-Cce
Q psy8497 120 LHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIK----LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP-MKQ 194 (2355)
Q Consensus 120 LrVVvytGGkq~rkqirq~DILVTTPErLLDLLd----rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lpp-nrQ 194 (2355)
+. ..|..+|+.... ........-++|||||+=++... .+..++..++. ..+
T Consensus 1037 i~--------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~~----~m~~Ll~~~~~~gar 1092 (1747)
T PRK13709 1037 VD--------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNT----DMARAYALIAAGGGR 1092 (1747)
T ss_pred cc--------------------hhhHHHHhcccccccccccCCCCCCcEEEEEccccccHH----HHHHHHHhhhcCCCE
Confidence 11 123222221110 00111234479999999976543 34444444443 577
Q ss_pred EEEEEec
Q psy8497 195 MLVVSAT 201 (2355)
Q Consensus 195 ILLLSAT 201 (2355)
+|++.-+
T Consensus 1093 vVLVGD~ 1099 (1747)
T PRK13709 1093 AVSSGDT 1099 (1747)
T ss_pred EEEecch
Confidence 8876654
No 228
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.62 E-value=0.21 Score=70.46 Aligned_cols=63 Identities=27% Similarity=0.337 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhc-CCCCCeEEEEcccHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKL-PVQQPQTIILAPTREIAVQI 106 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ek-r~qggRVLILVPTRALAqQ~ 106 (2355)
.|++-|.+++..++.. +-++|.+..|+|||.+. -.++..+... ...+..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 7899999999999865 55999999999999653 2333332211 12456788999998885544
No 229
>PRK08116 hypothetical protein; Validated
Probab=94.58 E-value=0.36 Score=56.97 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=26.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
.++|.+++|+|||..+. ++...+.. .+.+++++ +...|+
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~---~~~~v~~~-~~~~ll 154 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE---KGVPVIFV-NFPQLL 154 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH---cCCeEEEE-EHHHHH
Confidence 49999999999997765 56666653 24455554 445553
No 230
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.50 E-value=0.4 Score=60.00 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=74.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc-c-cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA-P-TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV-P-TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
++-++|++|||.|||.+..-.+..+... ....+|-||. - .|.=|..+..+..++. ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~--~~~~kVaiITtDtYRIGA~EQLk~Ya~im----~v--------------- 261 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML--KKKKKVAIITTDTYRIGAVEQLKTYADIM----GV--------------- 261 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh--ccCcceEEEEeccchhhHHHHHHHHHHHh----CC---------------
Confidence 4558899999999996654444444321 2334444444 2 2322222233333321 11
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc-ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI-NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk-N~GF~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
+=.++.+|.-|...+. .+..+++|.||=+=+-. +......+..++.......-.|.||||....++..+-
T Consensus 262 --p~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 262 --PLEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred --ceEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 1256777877766553 45677899999876532 3335566666666665566678899998876665443
No 231
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.49 E-value=0.24 Score=60.04 Aligned_cols=136 Identities=10% Similarity=0.107 Sum_probs=69.4
Q ss_pred CCcHHHHHHHHHHHcCC----cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh-ccc
Q psy8497 43 KESPIQMAAFPYVLNGY----DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG-AHV 117 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGR----NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg-k~A 117 (2355)
.++|||...+..+.... ..|+.+|.|.|||..+...+-..+.+...... -|.. ...++.+. ...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~----~Cg~-------C~sC~~~~~g~H 71 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG----ACGS-------CKGCQLLRAGSH 71 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC----CCCC-------CHHHHHHhcCCC
Confidence 46899999999888653 37899999999997665444333322111111 1111 12222221 223
Q ss_pred CCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcc--cCcCceEEEecccchhcccChHHHHHHHHHhCCCCceE
Q psy8497 118 KNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYL--NMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~L--dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQI 195 (2355)
|++..+.-.+... .| .-+.+..+...-.. ....+.++||||+|+|.... ...+.++++.-+....+
T Consensus 72 PD~~~i~~~~~~~--------~i---~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~~~~f 139 (328)
T PRK05707 72 PDNFVLEPEEADK--------TI---KVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNA-ANALLKSLEEPSGDTVL 139 (328)
T ss_pred CCEEEEeccCCCC--------CC---CHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHH-HHHHHHHHhCCCCCeEE
Confidence 3433322111100 01 12334433322111 23567899999999986432 35555566654444555
Q ss_pred EEEEec
Q psy8497 196 LVVSAT 201 (2355)
Q Consensus 196 LLLSAT 201 (2355)
|++|..
T Consensus 140 iL~t~~ 145 (328)
T PRK05707 140 LLISHQ 145 (328)
T ss_pred EEEECC
Confidence 544443
No 232
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.47 E-value=0.26 Score=71.23 Aligned_cols=135 Identities=14% Similarity=0.133 Sum_probs=80.4
Q ss_pred CCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
.|.+-|.+++..++... =+||.++.|+|||.+ +-.++..+. ..+..|++++|+...+..+.+..... . .
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~---~~G~~V~~lAPTgrAA~~L~e~~g~~---A--~ 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLAS---EQGYEIQIITAGSLSAQELRQKIPRL---A--S 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHH---hcCCeEEEEeCCHHHHHHHHHHhcch---h--h
Confidence 68999999999998763 489999999999944 445555544 34788999999988765555432210 0 0
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC-CCCceEEEEE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL-PPMKQMLVVS 199 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L-ppnrQILLLS 199 (2355)
.+..+.. ... -.....|...|+ .....+..-++|||||+-++.. ..+..++... +...++|++.
T Consensus 500 Ti~~~l~-----~l~--~~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~garvVlvG 564 (1960)
T TIGR02760 500 TFITWVK-----NLF--NDDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNSKLILLN 564 (1960)
T ss_pred hHHHHHH-----hhc--ccccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCCEEEEEc
Confidence 0000000 000 001122222232 1222345678999999997653 3455555544 4578888877
Q ss_pred ec
Q psy8497 200 AT 201 (2355)
Q Consensus 200 AT 201 (2355)
-+
T Consensus 565 D~ 566 (1960)
T TIGR02760 565 DS 566 (1960)
T ss_pred Ch
Confidence 64
No 233
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.41 E-value=0.14 Score=67.27 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
..|++-|.+++.. ....++|.|..|+|||.+.+.-+...+.........+|+|+-|+..|.++.+.+.++....
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~---- 81 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS---- 81 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC----
Confidence 3699999999874 3457999999999999876655554443233455679999999999999999998874210
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhccc--CcCceEEEecccch
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLN--MDSVRLFIMDEADK 172 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~Ld--LSkIdLLIVDEAHR 172 (2355)
...+.|+|...|...+.+.... ...-.+-|+|+.+.
T Consensus 82 ---------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 119 (721)
T PRK11773 82 ---------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQ 119 (721)
T ss_pred ---------------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 1247789998875433322111 11123567887764
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.35 E-value=0.55 Score=55.17 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=57.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
..++|.+++|+|||..+. ++...+.. .+..++|+ +...| ...++......
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~---~g~~v~~i-t~~~l----~~~l~~~~~~~--------------------- 149 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL---RGKSVLII-TVADI----MSAMKDTFSNS--------------------- 149 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh---cCCeEEEE-EHHHH----HHHHHHHHhhc---------------------
Confidence 468999999999997655 55555553 34556555 44344 33333211000
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHH-HHHHHHHhC-CCCceEEEEEeccC
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVE-DITWIYSQL-PPMKQMLVVSATYS 203 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~S-rLeeILs~L-ppnrQILLLSATLS 203 (2355)
-.+.+.++.. +..+++|||||++......+.. .+..|+... .....+|++|--..
T Consensus 150 ---~~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~ 206 (244)
T PRK07952 150 ---ETSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNM 206 (244)
T ss_pred ---cccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCH
Confidence 0123333222 3467899999999876443333 344455543 23455666555433
No 235
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.24 E-value=0.37 Score=60.17 Aligned_cols=106 Identities=14% Similarity=0.253 Sum_probs=56.1
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
..++|.||+|+|||.... ++...+.. ...+..++++ +...+..++...+..
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~-~~~~~~v~yi-~~~~~~~~~~~~~~~-------------------------- 199 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILE-KNPNAKVVYV-TSEKFTNDFVNALRN-------------------------- 199 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH-hCCCCeEEEE-EHHHHHHHHHHHHHc--------------------------
Confidence 348999999999996654 45555543 1224556666 444554333332211
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCC-CCceEEEEEeccChh
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLP-PMKQMLVVSATYSHD 205 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lp-pnrQILLLSATLS~E 205 (2355)
.+.+.+... +..+++|||||+|.+.... ....+..++..+. ...++| ++++.++.
T Consensus 200 ----~~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~ii-its~~~p~ 256 (450)
T PRK00149 200 ----NTMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIV-LTSDRPPK 256 (450)
T ss_pred ----CcHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEE-EECCCCHH
Confidence 011223222 2357799999999876432 2234444444432 234554 45554433
No 236
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.22 E-value=0.35 Score=63.63 Aligned_cols=145 Identities=10% Similarity=0.108 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHH---cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc------
Q psy8497 45 SPIQMAAFPYVL---NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA------ 115 (2355)
Q Consensus 45 RPYQeEALn~LL---SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk------ 115 (2355)
.|.=.+-|+.++ +++-.++.+|-|.|||.+..+.++..+. ..+.+++|++|...-+.++.+.++.+..
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~---f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~ 247 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMIS---FLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKP 247 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHH---hcCCeEEEECCChhhHHHHHHHHHHHHHHhcccc
Confidence 444444444443 4566888999999999766545443332 1357899999999888888888777653
Q ss_pred ccCCc-EEEEEECCccc-cCC----CC--CCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHH
Q psy8497 116 HVKNL-HVDYFIGGTQV-ERP----KR--PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187 (2355)
Q Consensus 116 ~APgL-rVVvytGGkq~-rkq----ir--q~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs 187 (2355)
|.+.. .+..+.|+... .-. .. ...|...+.. .....-..+++||||||+.+... .+..++-
T Consensus 248 ~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~~----~l~aIlP 316 (752)
T PHA03333 248 WFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNPG----ALLSVLP 316 (752)
T ss_pred ccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCHH----HHHHHHH
Confidence 34332 22223333221 000 00 0112222111 12223345689999999988753 3333333
Q ss_pred hCC-CCceEEEEEeccC
Q psy8497 188 QLP-PMKQMLVVSATYS 203 (2355)
Q Consensus 188 ~Lp-pnrQILLLSATLS 203 (2355)
.+. ...++|++|.+..
T Consensus 317 ~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 317 LMAVKGTKQIHISSPVD 333 (752)
T ss_pred HHccCCCceEEEeCCCC
Confidence 333 3566677777653
No 237
>PRK09183 transposase/IS protein; Provisional
Probab=94.19 E-value=0.3 Score=57.29 Aligned_cols=47 Identities=9% Similarity=0.223 Sum_probs=30.0
Q ss_pred HHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 52 FPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 52 Ln~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
+.++.++.+++|.+|+|+|||..+..... .+. ..+..++++. ...|.
T Consensus 96 ~~~i~~~~~v~l~Gp~GtGKThLa~al~~-~a~---~~G~~v~~~~-~~~l~ 142 (259)
T PRK09183 96 LSFIERNENIVLLGPSGVGKTHLAIALGY-EAV---RAGIKVRFTT-AADLL 142 (259)
T ss_pred CCchhcCCeEEEEeCCCCCHHHHHHHHHH-HHH---HcCCeEEEEe-HHHHH
Confidence 34566788899999999999976654433 222 1355666653 34453
No 238
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.13 E-value=0.51 Score=63.60 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHc----C---CcE-EEEccCCchHHHHHHHHHHHHHH
Q psy8497 45 SPIQMAAFPYVLN----G---YDA-IVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 45 RPYQeEALn~LLS----G---RNV-ILAAPTGSGKTLVALIAILerL~ 84 (2355)
|.-|.+.|..++. + .++ +|.|++|+|||.+.- .++..|.
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK-~VLrELq 806 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVY-SVIQLLQ 806 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5666665544432 2 234 599999999996654 5555554
No 239
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.12 E-value=0.34 Score=65.12 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=28.7
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+++|||||+|+|.... ...|.++++..+....+||++
T Consensus 118 ~~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3578899999999987543 355666777766666666665
No 240
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.08 E-value=0.32 Score=54.07 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.2
Q ss_pred CCcEEEEccCCchHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVV 77 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALI 77 (2355)
...++|.+|+|+|||..+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45699999999999966553
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.95 E-value=0.76 Score=56.08 Aligned_cols=106 Identities=13% Similarity=0.222 Sum_probs=56.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
..+++|.|++|+|||..+. ++...+.. .+..|+| ++...|+.++... .+. . .
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~---~g~~V~y-~t~~~l~~~l~~~--~~~-~---------------~----- 234 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLD---RGKSVIY-RTADELIEILREI--RFN-N---------------D----- 234 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHH---CCCeEEE-EEHHHHHHHHHHH--Hhc-c---------------c-----
Confidence 5789999999999997665 44455542 3445555 4555563333221 010 0 0
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh-HHHHHHHHHhCC-CCceEEEEEeccC
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF-VEDITWIYSQLP-PMKQMLVVSATYS 203 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF-~SrLeeILs~Lp-pnrQILLLSATLS 203 (2355)
.+ ....+ -.+..+++||||+.+......+ ...+..++.... ....+|+.|-..+
T Consensus 235 -------~~-~~~~~----~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~ 290 (329)
T PRK06835 235 -------KE-LEEVY----DLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSL 290 (329)
T ss_pred -------hh-HHHHH----HHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCH
Confidence 00 00001 1245678999999987654433 345556665543 2345555444433
No 242
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.94 E-value=0.44 Score=62.61 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=81.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc-ccCCcEEEEEECCcccc-CCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA-HVKNLHVDYFIGGTQVE-RPK 135 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk-~APgLrVVvytGGkq~r-kqi 135 (2355)
++-.++..|--.|||.+.. +++..+. ....+..++|++|....+..+.+.+..+.. |.++..+..+.|. ... ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll-~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~ 330 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALAL-ATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFP 330 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHH-HhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEec
Confidence 4557889999999998655 3333333 123578899999999999999988887643 4444334333442 220 000
Q ss_pred CC--CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 136 RP--VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 136 rq--~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
.. .-|.+.| ........-..+++||||||+.+....+...+ .++. ....++|++|.|...
T Consensus 331 nG~kstI~FaS------arntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~--~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 331 DGSRSTIVFAS------SHNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLN--QTNCKIIFVSSTNTG 392 (738)
T ss_pred CCCccEEEEEe------ccCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHh--ccCccEEEEecCCCC
Confidence 01 2344442 11122334567899999999988764333322 2222 237889999988653
No 243
>PRK06921 hypothetical protein; Provisional
Probab=93.92 E-value=0.39 Score=56.69 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=27.2
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAV 104 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAq 104 (2355)
+.+++|.+++|+|||..+. +++..+... .+..++|+. ...++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~--~g~~v~y~~-~~~l~~ 159 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK--KGVPVLYFP-FVEGFG 159 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh--cCceEEEEE-HHHHHH
Confidence 4679999999999996654 555555521 145566654 444433
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.87 E-value=0.33 Score=56.96 Aligned_cols=50 Identities=12% Similarity=0.315 Sum_probs=33.7
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
++.++++.+++|.|||..++..+. .+.. .+.-++++++..|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~-~l~~----~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN-ELLK----AGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH-HHHH----cCCeEEEEEHHHHHHHHHHHHh
Confidence 577899999999999988774444 4442 2334555777778655554443
No 245
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.78 E-value=0.13 Score=67.37 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.|++-|.+++.. ....++|.|..|+|||.+.+.-+...+........++|+|+.|+..+.++.+.+..+....
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~----- 74 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK----- 74 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc-----
Confidence 488999999875 3467899999999999886665555444323445679999999999999999888764210
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHH-HHhhcccC-cCceEEEecccch
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQM-IKLKYLNM-DSVRLFIMDEADK 172 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDL-Ldrr~LdL-SkIdLLIVDEAHR 172 (2355)
....|.|+|...|... +......+ ..-.+-|+|+...
T Consensus 75 -------------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 75 -------------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred -------------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 0124778998876533 32211100 1123557777654
No 246
>PRK12377 putative replication protein; Provisional
Probab=93.69 E-value=0.55 Score=55.25 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=27.8
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQI 106 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~ 106 (2355)
.+++|.+++|+|||..+. ++...+.. .+..+ ++++...|..++
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~---~g~~v-~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLA---KGRSV-IVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH---cCCCe-EEEEHHHHHHHH
Confidence 579999999999996655 55555552 23444 445555664443
No 247
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.65 E-value=0.085 Score=67.82 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=78.2
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHH-HHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQIT-DVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~a-nwLREFgk~APg 119 (2355)
..+|||.+.++.+... +.++|..+.-+|||.+.+..+. +... ....++|+|.|+..++..+. ..|..+....|.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g-~~i~--~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~ 92 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIG-YSID--QDPGPMLYVQPTDDAAKDFSKERLDPMIRASPV 92 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhce-EEEE--eCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHH
Confidence 6799999999988764 4699999999999986554433 3332 34577999999999998766 667777777766
Q ss_pred cEEEEEE------CCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 120 LHVDYFI------GGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 120 LrVVvyt------GGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
++-.+.. ++...........|.++....- ..+....+++||+||++.+.
T Consensus 93 l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 93 LRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHhCchhhcccCCchhheecCCCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 5532222 0111111111122333321111 12245667899999999884
No 248
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.64 E-value=0.53 Score=62.82 Aligned_cols=40 Identities=18% Similarity=0.463 Sum_probs=26.6
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
..+++|||||+|+|....+ ..+.++++.-+....+|++|.
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEEC
Confidence 4678999999999875433 445556666555555555553
No 249
>PTZ00293 thymidine kinase; Provisional
Probab=93.64 E-value=0.3 Score=56.53 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=24.9
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
-++.+||++|||.-.+-.+..+.. .+.+++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~----ag~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY----SEKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH----cCCceEEEEecc
Confidence 578999999999544433333322 467789998864
No 250
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.62 E-value=0.17 Score=66.56 Aligned_cols=117 Identities=18% Similarity=0.128 Sum_probs=75.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
....+....-..|++-|.+++-. ...+++|.|..|+|||.+.+.-+...+.........+|+|+.++..+..+.+.+.
T Consensus 185 ~~~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~ 262 (684)
T PRK11054 185 YADFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIR 262 (684)
T ss_pred HHHHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHH
Confidence 34444444445799999999863 3456889999999999776655444443333345689999999999988888887
Q ss_pred HHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHH-HHHhhcccCcCceEEEecccc
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQ-MIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLD-LLdrr~LdLSkIdLLIVDEAH 171 (2355)
+... ...|.|.|...|.. ++....-....+..+++|+..
T Consensus 263 ~~lg---------------------~~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~ 302 (684)
T PRK11054 263 ERLG---------------------TEDITARTFHALALHIIQQGSKKVPVISKLENDSKA 302 (684)
T ss_pred HhcC---------------------CCCcEEEeHHHHHHHHHHHhhhcCCCcCccccchHH
Confidence 6531 02478899887753 333221122233344556543
No 251
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.52 E-value=0.78 Score=55.48 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=22.8
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
.+++|.||+|+|||.+ +-.++..+... .....+++|
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~~~-~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELEEI-AVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHh-cCCcEEEEE
Confidence 4699999999999955 44555555421 123445555
No 252
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.30 E-value=0.9 Score=45.67 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.1
Q ss_pred EEEEccCCchHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 61 VILAAPTGSGKTLVAL 76 (2355)
++|.+|.|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999995443
No 253
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.18 E-value=0.47 Score=58.31 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=24.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.++|.|++|+|||.... ++...+.+. ..+..++++..
T Consensus 138 ~l~l~G~~G~GKThL~~-ai~~~l~~~-~~~~~v~yi~~ 174 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLH-AIGNEILEN-NPNAKVVYVSS 174 (405)
T ss_pred eEEEECCCCCcHHHHHH-HHHHHHHHh-CCCCcEEEEEH
Confidence 47899999999996654 555555532 23456777643
No 254
>PRK05642 DNA replication initiation factor; Validated
Probab=93.14 E-value=0.35 Score=55.73 Aligned_cols=44 Identities=18% Similarity=0.331 Sum_probs=28.0
Q ss_pred CceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 161 SVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
.+++||||++|.+... .+...+..++..+......+++|++..+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4578999999987543 3345566777665544445566666443
No 255
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.14 E-value=0.42 Score=69.25 Aligned_cols=62 Identities=26% Similarity=0.254 Sum_probs=45.0
Q ss_pred CCCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHH---HHHHHHHHhcCCCCCeEEEEcccHHHHHHH
Q psy8497 42 VKESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFV---VAALNKLIKLPVQQPQTIILAPTREIAVQI 106 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVAL---IAILerL~ekr~qggRVLILVPTRALAqQ~ 106 (2355)
..|++.|.+++..++... -++|.+..|+|||.+.. -++...+. ..+..++.++||-..+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~---~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE---SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH---hcCCeEEEEeChHHHHHHH
Confidence 479999999999988754 47889999999995541 22333322 3467799999998775544
No 256
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.07 E-value=0.72 Score=58.27 Aligned_cols=126 Identities=17% Similarity=0.253 Sum_probs=67.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++++|+|||.++.-.+ .++.. .+.++++|.. .+ +...|+..+...+. +.+ ++....
T Consensus 98 I~lvG~~GsGKTTtaakLA-~~L~~---~g~kV~lV~~D~~R~aa~eQL~~la~~~g-----vp~---~~~~~~------ 159 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLA-RYFKK---KGLKVGLVAADTYRPAAYDQLKQLAEKIG-----VPF---YGDPDN------ 159 (437)
T ss_pred EEEECCCCCcHHHHHHHHH-HHHHH---cCCeEEEecCCCCCHHHHHHHHHHHHHcC-----CcE---EecCCc------
Confidence 7889999999997655443 44442 3456666553 22 33344444444431 111 111000
Q ss_pred CcEEEECH-HHHHHHHHhhcccCcCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 138 VQIVVGSP-GRIKQMIKLKYLNMDSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTP-ErLLDLLdrr~LdLSkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..| +.+...+.. ....++||||.+=++.. ......+..+.....+..-++.+.|+...+....+..+
T Consensus 160 -----~d~~~i~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 160 -----KDAVEIAKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred -----cCHHHHHHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 011 112233322 12237999999965542 22344555666666666777888998876666555543
No 257
>PRK06893 DNA replication initiation factor; Validated
Probab=93.07 E-value=0.37 Score=55.15 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=29.1
Q ss_pred cCceEEEecccchhccc-ChHHHHHHHHHhCCC-CceEEEEEeccChhH
Q psy8497 160 DSVRLFIMDEADKLINT-GFVEDITWIYSQLPP-MKQMLVVSATYSHDN 206 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~-GF~SrLeeILs~Lpp-nrQILLLSATLS~EI 206 (2355)
...++|||||+|.+... .+...+..++..+.. ..++|++|++..+..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 45679999999987532 233345555555433 346677777765443
No 258
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.80 E-value=0.45 Score=61.25 Aligned_cols=147 Identities=15% Similarity=0.074 Sum_probs=89.0
Q ss_pred CCcHHHHHHHHHHHc------C----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLN------G----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 43 eLRPYQeEALn~LLS------G----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
.|-|||.-++-.|+. + +-++|..|-+-|||..+...++..+.-....+..+.|++|+...+.+.++.++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 789999999999983 1 137899999999996554333333332335677899999999999999999988
Q ss_pred HhcccCCcEEEEEECCccccCCCCCCc--EEEECHHHHHHHHH--hhcccCcCceEEEecccchhcccChHHHHHHHHHh
Q psy8497 113 VGAHVKNLHVDYFIGGTQVERPKRPVQ--IVVGSPGRIKQMIK--LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ 188 (2355)
Q Consensus 113 Fgk~APgLrVVvytGGkq~rkqirq~D--ILVTTPErLLDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~ 188 (2355)
.....+++...+ ..+... |...--...+..+. ....+-.+..+.||||.|.....+ ..+..+...
T Consensus 141 mv~~~~~l~~~~---------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~g 209 (546)
T COG4626 141 MVKRDDDLRDLC---------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKGG 209 (546)
T ss_pred HHHhCcchhhhh---------ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHhh
Confidence 766554222111 111111 11111111111111 133345566799999999877652 344444444
Q ss_pred C--CCCceEEEEEe
Q psy8497 189 L--PPMKQMLVVSA 200 (2355)
Q Consensus 189 L--ppnrQILLLSA 200 (2355)
+ .+..++++.|.
T Consensus 210 ~~ar~~~l~~~ITT 223 (546)
T COG4626 210 LGARPEGLVVYITT 223 (546)
T ss_pred hccCcCceEEEEec
Confidence 3 34567777766
No 259
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.79 E-value=0.46 Score=55.16 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.0
Q ss_pred CcEEEEccCCchHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVA 78 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIA 78 (2355)
.++||.+|+|+|||.++-+.
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 35899999999999766533
No 260
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.75 E-value=0.65 Score=54.54 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=25.3
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
....+|||||+|.+... ....+..++...+...++|+++.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45679999999987543 23445556665555566665443
No 261
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.72 E-value=1 Score=54.81 Aligned_cols=143 Identities=16% Similarity=0.221 Sum_probs=74.4
Q ss_pred CCCcHHHHHHHHHHHc----CC---cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 42 VKESPIQMAAFPYVLN----GY---DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS----GR---NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..++|||..++..+.+ ++ -.++.+|.|.||+..+.. +...|.-....... .|+. ..++. .
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC~~~~~~~---~c~~-------c~~~~--~ 69 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLASGPDPAA---AQRT-------RQLIA--A 69 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhCCCCCCCC---cchH-------HHHHh--c
Confidence 4688999999988764 22 388999999999976654 44444321101100 1221 11221 2
Q ss_pred cccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcc--cCcCceEEEecccchhcccChHHHHHHHHHhCCCC
Q psy8497 115 AHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYL--NMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~L--dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppn 192 (2355)
...|++.++....+..... ....|. .+.+..+...-.+ ......++|||+|+.|... -...+.++++.=+..
T Consensus 70 g~HPD~~~i~~~p~~~~~k--~~~~I~---idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~ 143 (319)
T PRK08769 70 GTHPDLQLVSFIPNRTGDK--LRTEIV---IEQVREISQKLALTPQYGIAQVVIVDPADAINRA-ACNALLKTLEEPSPG 143 (319)
T ss_pred CCCCCEEEEecCCCccccc--cccccc---HHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHH-HHHHHHHHhhCCCCC
Confidence 3446666553111111000 001222 3334433322111 1346789999999998543 345566666665555
Q ss_pred ceEEEEEeccC
Q psy8497 193 KQMLVVSATYS 203 (2355)
Q Consensus 193 rQILLLSATLS 203 (2355)
..+|++|..+.
T Consensus 144 ~~fiL~~~~~~ 154 (319)
T PRK08769 144 RYLWLISAQPA 154 (319)
T ss_pred CeEEEEECChh
Confidence 66666655433
No 262
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.71 E-value=1 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=18.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
.+++|.+|+|+|||.+ +-.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 4699999999999955 445555554
No 263
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.68 E-value=0.4 Score=62.30 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.|++-|.+++.. ...+++|.|..|+|||.+.+.-+...+.+.......+|+|+.|+..+.++.+.+.+.....
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~----- 73 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG----- 73 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-----
Confidence 378999998874 3567999999999999776666655554323345679999999999999998888764210
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHHhhccc--CcCceEEEecccch
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLN--MDSVRLFIMDEADK 172 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLdrr~Ld--LSkIdLLIVDEAHR 172 (2355)
....|.|.|...|...+.+.... -..-.+-|+|+...
T Consensus 74 -------------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 74 -------------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred -------------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 11358899998876444332111 01122457787764
No 264
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.55 E-value=0.9 Score=49.80 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=29.5
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
..+.++||||+|.|... ....+.++++.-+....+|++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 56889999999987643 34666777777666666666665544
No 265
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.52 E-value=0.69 Score=59.29 Aligned_cols=39 Identities=13% Similarity=0.376 Sum_probs=27.3
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.++||||+|+|....+ ..+.++++..+....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998875433 44556666666666666655
No 266
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.43 E-value=0.62 Score=58.78 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=57.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
..++|.|++|+|||... .++...+.. ...+.+++||.+ ..+..++...+..-.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~-~~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------------ 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIES-NFSDLKVSYMSG-DEFARKAVDILQKTH------------------------ 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHH-hCCCCeEEEEEH-HHHHHHHHHHHHHhh------------------------
Confidence 34899999999999554 455555542 223556776655 455444333332100
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCC-CCceEEEEEeccC
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLP-PMKQMLVVSATYS 203 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lp-pnrQILLLSATLS 203 (2355)
+.+..+.. .+..+++|||||+|.+.... ....+..++..+. ...|+|+.|-.++
T Consensus 195 -------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 195 -------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred -------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 11111111 13467799999999876432 2344555555543 3345555444443
No 267
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.43 E-value=2.1 Score=51.22 Aligned_cols=127 Identities=14% Similarity=0.233 Sum_probs=70.9
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--c-HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--T-REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--T-RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
..+++.+++|+|||..+.+.+. .+.. .+..+.++.- . ...+.||..+...+ +
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~-~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~-----~---------------- 130 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW-QFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTI-----G---------------- 130 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH-HHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhc-----C----------------
Confidence 4588999999999976554433 3331 2445555553 2 24555555444332 1
Q ss_pred CCCcEEE-ECHHHHHHHHHhhcccCcCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChh-HHHHHHH
Q psy8497 136 RPVQIVV-GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHD-NLATLQK 212 (2355)
Q Consensus 136 rq~DILV-TTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~E-ILElLkK 212 (2355)
+.++. .+++.|...+..- -....+++||||-+=+... ......+..++....+..-++.++||.... ....+..
T Consensus 131 --~~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~ 207 (270)
T PRK06731 131 --FEVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 207 (270)
T ss_pred --ceEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHH
Confidence 12222 3555565544321 1124678999999977542 223444555555555555577799987654 4455554
Q ss_pred h
Q psy8497 213 Y 213 (2355)
Q Consensus 213 f 213 (2355)
|
T Consensus 208 f 208 (270)
T PRK06731 208 F 208 (270)
T ss_pred h
Confidence 4
No 268
>PRK08727 hypothetical protein; Validated
Probab=92.36 E-value=0.75 Score=52.96 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=22.6
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
..++|.+++|+|||.... ++...+.+ .+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~---~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQ---AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH---cCCcEEEEe
Confidence 349999999999996544 44444442 244566653
No 269
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.35 E-value=0.76 Score=60.63 Aligned_cols=42 Identities=14% Similarity=0.374 Sum_probs=27.1
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
...+.++||||+|+|....+ +.+.++++.-+....+|+.|.-
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCC
Confidence 35688999999999865433 3445555554555666665543
No 270
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.31 E-value=1.2 Score=52.53 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=25.9
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
..++|||||+|.+........+..++...+...++|+.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4568999999988333234555666666666666666443
No 271
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.29 E-value=1.5 Score=50.36 Aligned_cols=61 Identities=25% Similarity=0.256 Sum_probs=41.0
Q ss_pred HHHHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 49 MAAFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 49 eEALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
...|..++. +..++|.+++|+|||+.++..+...+. .+.++|||+-. +-..|+.+.+..++
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~----~ge~~lyvs~e-e~~~~i~~~~~~~g 72 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----MGEPGIYVALE-EHPVQVRRNMAQFG 72 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH----cCCcEEEEEee-CCHHHHHHHHHHhC
Confidence 345666664 345899999999999776655555544 36678888843 44456666666654
No 272
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.27 E-value=0.68 Score=58.44 Aligned_cols=105 Identities=17% Similarity=0.308 Sum_probs=56.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
+.++|.||.|+|||.... ++...+.. .+.+++|+.. ..+..+....+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~---~~~~v~yi~~-~~f~~~~~~~l~~-------------------------- 190 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE---SGGKILYVRS-ELFTEHLVSAIRS-------------------------- 190 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH---cCCCEEEeeH-HHHHHHHHHHHhc--------------------------
Confidence 348999999999996544 55555543 2566777654 3443322222110
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhC-CCCceEEEEEeccChh
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQL-PPMKQMLVVSATYSHD 205 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~L-ppnrQILLLSATLS~E 205 (2355)
...+.+... ...+++|||||+|.+.... ....+..++..+ ....++|+.|.+++..
T Consensus 191 ----~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 191 ----GEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQD 248 (445)
T ss_pred ----chHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHH
Confidence 001112111 2467899999999886432 233444444433 2345666555454433
No 273
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.09 E-value=1.3 Score=58.99 Aligned_cols=40 Identities=13% Similarity=0.316 Sum_probs=26.6
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.+|||||+|.|.... ...+.+++...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999876432 344556666555566666655
No 274
>KOG0989|consensus
Probab=92.08 E-value=0.43 Score=58.07 Aligned_cols=46 Identities=11% Similarity=0.291 Sum_probs=31.9
Q ss_pred ccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 157 LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 157 LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
.....+.+||+||||.|...- ...+.++++......++++++.-+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 345667899999999887543 3555666666666777787776543
No 275
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.07 E-value=1.6 Score=56.16 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=25.5
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.++||||+|.|....+ ..+.+.++.-++...+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 35788999999998865432 44455555555555555544
No 276
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.97 E-value=1.3 Score=55.75 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=25.1
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
..++|.||+|+|||..+. ++...+.+ ...+..++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~-~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQ-NEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHH-hCCCCeEEEEEH
Confidence 358999999999996654 55555543 123456777654
No 277
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.96 E-value=0.94 Score=57.99 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.6
Q ss_pred EEEEccCCchHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAI 79 (2355)
+|+.||.|+|||.++.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999997766443
No 278
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.94 E-value=2 Score=57.47 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=87.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 33 RQGLQENGFVKESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 33 LK~Lqa~GF~eLRPYQeEALn~LLSGR--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
-..|.....+....-|.+.+..++... -++|.|.-|=|||.+.-+++. .+.+. .....++|.+|+.+-++.+...+
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~-~~~~~iiVTAP~~~nv~~Lf~fa 281 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARL-AGSVRIIVTAPTPANVQTLFEFA 281 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHh-cCCceEEEeCCCHHHHHHHHHHH
Confidence 334555555666666666777777654 488899999999976665553 22221 11458999999998887777666
Q ss_pred HHHhcccCCcEEE-EEEC-CccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHh
Q psy8497 111 RSVGAHVKNLHVD-YFIG-GTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ 188 (2355)
Q Consensus 111 REFgk~APgLrVV-vytG-Gkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~ 188 (2355)
.+-+... +.... .... +.........+.|-+-+|.... ..-++||||||=.+. ...+..++..
T Consensus 282 ~~~l~~l-g~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~~ 346 (758)
T COG1444 282 GKGLEFL-GYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLRR 346 (758)
T ss_pred HHhHHHh-CCccccccccccceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHhh
Confidence 5543333 22211 1111 1111111122446677776551 115699999998653 3555555554
Q ss_pred CCCCceEEEEEeccC
Q psy8497 189 LPPMKQMLVVSATYS 203 (2355)
Q Consensus 189 LppnrQILLLSATLS 203 (2355)
. +.++||.|..
T Consensus 347 ~----~rv~~sTTIh 357 (758)
T COG1444 347 F----PRVLFSTTIH 357 (758)
T ss_pred c----CceEEEeeec
Confidence 4 3577788765
No 279
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.90 E-value=1.4 Score=50.87 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=22.4
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
..++|.+|+|+|||.... ++...+.. .+..++|+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~-a~~~~~~~---~~~~v~y~~ 80 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH-AACAELSQ---RGRAVGYVP 80 (235)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh---CCCeEEEEE
Confidence 468999999999996554 33333332 244555553
No 280
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.82 E-value=1.5 Score=56.47 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.4
Q ss_pred cEEEEccCCchHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAI 79 (2355)
.+|+.+|.|+|||.++-+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999997766444
No 281
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.81 E-value=1.3 Score=54.93 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.5
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.+||.+|.|+|||.++.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999996554
No 282
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.80 E-value=0.55 Score=63.52 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=24.7
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
..+.+|||||+|+|.... ...+.++++.-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 567899999999986432 34455555554555555554
No 283
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.61 E-value=1.3 Score=57.37 Aligned_cols=121 Identities=14% Similarity=0.250 Sum_probs=58.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
+..++|++|+|+|||......+...... ..+.++.+|. +.+..+ .+++..+.... ++.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~--~~gkkVaLIdtDtyRigA---~EQLk~ya~iL-gv~v~------------ 411 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ--HAPRDVALVTTDTQRVGG---REQLHSYGRQL-GIAVH------------ 411 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCceEEEecccccccH---HHHHHHhhccc-CceeE------------
Confidence 4558889999999997654333322221 1233455544 223222 12222222111 11110
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCCceEEEEEeccChhH
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMKQMLVVSATYSHDN 206 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~LppnrQILLLSATLS~EI 206 (2355)
.+.+...|...+.. +..+++||||.+=+..... ....+..+.. ......+|+++++.....
T Consensus 412 -----~a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~D 473 (559)
T PRK12727 412 -----EADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSD 473 (559)
T ss_pred -----ecCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhH
Confidence 11233445544432 3467899999997653221 1122322222 223456788888876433
No 284
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.49 E-value=1.1 Score=54.40 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh-ccc
Q psy8497 44 ESPIQMAAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG-AHV 117 (2355)
Q Consensus 44 LRPYQeEALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg-k~A 117 (2355)
++|||...+..+... +..|+.+|.|.|||..+...+-..+...........=.|+ .++.+. ...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~----------~C~~~~~~~H 71 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECM----------SCHLFGQGSH 71 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCH----------HHHHHhcCCC
Confidence 478888888887743 2378999999999976664443333221111110111122 222221 334
Q ss_pred CCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcc--cCcCceEEEecccchhcccChHHHHHHHHHhCCCCceE
Q psy8497 118 KNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYL--NMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~L--dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQI 195 (2355)
|++..+.-.+..... ......| ..+.+.++...-.+ ....+.++|+|++|.|-.. ....+.++++..+....+
T Consensus 72 pD~~~~~p~~~~~~~-g~~~~~I---~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~~ 146 (325)
T PRK08699 72 PDFYEITPLSDEPEN-GRKLLQI---KIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVVF 146 (325)
T ss_pred CCEEEEecccccccc-cccCCCc---CHHHHHHHHHHHhhCcccCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCEE
Confidence 454443222210000 0000112 23444443332111 2356789999999987543 446666677766555555
Q ss_pred EEEEec
Q psy8497 196 LVVSAT 201 (2355)
Q Consensus 196 LLLSAT 201 (2355)
|++|..
T Consensus 147 Ilvth~ 152 (325)
T PRK08699 147 LLVSHA 152 (325)
T ss_pred EEEeCC
Confidence 554443
No 285
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.45 E-value=0.99 Score=55.48 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=27.6
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
...+.+|||||+|.|.... ...+.++++.-+....+|++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECC
Confidence 3578899999999885433 34566666665555555666543
No 286
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=91.40 E-value=1.1 Score=54.83 Aligned_cols=142 Identities=11% Similarity=0.160 Sum_probs=73.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH-HHHHHHHHHHHHhcccCCcEEEEEECCc--cccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGT--QVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA-LAqQ~anwLREFgk~APgLrVVvytGGk--q~rkqirq 137 (2355)
.|+.+..|+|||.+..+.++..+... ..+..+||+-|+.. |..-+...+....... ++....-.... ........
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILNTG 81 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecCCC
Confidence 68899999999998887777776642 14577888888876 5444555555433322 22211111111 11100001
Q ss_pred CcEEEECH-HHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC--CCceEEEEEeccChhHHHHHHHh
Q psy8497 138 VQIVVGSP-GRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP--PMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTP-ErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp--pnrQILLLSATLS~EILElLkKf 213 (2355)
..|++..- +....+ .....+.+++||||..+... .+..++..+. .....+++|.+|.....-....+
T Consensus 82 ~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w~~~~f 151 (396)
T TIGR01547 82 KKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHWVKKRF 151 (396)
T ss_pred eEEEeecccCChhHh-----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccHHHHHH
Confidence 22444332 111111 12233689999999987533 3333333332 22224788888875433333333
No 287
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.32 E-value=1.5 Score=58.01 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=25.7
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.++||||+|+|.... ...+.++++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 467899999999886543 344555666655555555544
No 288
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.16 E-value=0.87 Score=60.04 Aligned_cols=38 Identities=16% Similarity=0.375 Sum_probs=24.8
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
..+.++||||+|+|....+ ..+.++++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEEe
Confidence 5688999999998875433 4455556554444555554
No 289
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=91.10 E-value=0.8 Score=57.42 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=28.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
.++|+.+|.|+|||.++-+.+- ..+..|.-+..+..=+.++.+.+++
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~-------~~~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAG-------TTNAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHH-------hhCCceEEeccccccHHHHHHHHHH
Confidence 3699999999999976654332 1234466666655554444444443
No 290
>PLN03025 replication factor C subunit; Provisional
Probab=91.03 E-value=2.3 Score=50.99 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=24.1
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.+|||||+|.|.... ...+..+++..+....+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 357899999999986432 344455555544445555433
No 291
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.98 E-value=1.3 Score=54.14 Aligned_cols=39 Identities=13% Similarity=0.370 Sum_probs=24.2
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
....++||||+|.|....+ ..+...+...+....+|++|
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4577999999998864332 33444455444455555544
No 292
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.97 E-value=2.2 Score=46.93 Aligned_cols=115 Identities=12% Similarity=0.228 Sum_probs=54.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
..|+.+|.|.|||..+. .+...+.............|+.-.. +. ....|++.+....+..
T Consensus 16 ~~L~~G~~G~gkt~~a~-~~~~~l~~~~~~~~~~c~~~~~c~~-------~~--~~~~~d~~~~~~~~~~---------- 75 (188)
T TIGR00678 16 AYLFAGPEGVGKELLAL-ALAKALLCEQPGGGEPCGECPSCRL-------IE--AGNHPDLHRLEPEGQS---------- 75 (188)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCCHHHHH-------HH--cCCCCcEEEeccccCc----------
Confidence 48899999999996554 4444444211111112233333211 11 1122333332221110
Q ss_pred EEEECHHHHHHHHHhhc--ccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 140 IVVGSPGRIKQMIKLKY--LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 140 ILVTTPErLLDLLdrr~--LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
.+.+.+..++..-. -......+|||||+|.|.... ...+...++..+...-+|++
T Consensus 76 ---~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 76 ---IKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred ---CCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEE
Confidence 23355543333211 123567899999999986432 23444555544434444444
No 293
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.94 E-value=1.1 Score=51.75 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=49.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
.++.+||.+|||.-.+..+. ... ..+.++++..|...- .+ +...+.- +.-....-+
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~-~~~---~~g~~v~vfkp~iD~---------R~-----~~~~V~S------r~G~~~~A~ 62 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRAR-RYK---EAGMKVLVFKPAIDT---------RY-----GVGKVSS------RIGLSSEAV 62 (201)
T ss_pred EEEEccCcCcchHHHHHHHH-HHH---HcCCeEEEEeccccc---------cc-----ccceeee------ccCCcccce
Confidence 57899999999964333332 222 357778888885322 01 1111111 111112335
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
+|-....+.+.+...... ..+++|+||||+-+.
T Consensus 63 ~i~~~~~i~~~i~~~~~~-~~~~~v~IDEaQF~~ 95 (201)
T COG1435 63 VIPSDTDIFDEIAALHEK-PPVDCVLIDEAQFFD 95 (201)
T ss_pred ecCChHHHHHHHHhcccC-CCcCEEEEehhHhCC
Confidence 566666666666543221 227899999999654
No 294
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.84 E-value=0.52 Score=65.82 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=78.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
++++-|.++|. ..+.+++|.|.-|+|||.+.+--++..+... ....++|+|+=|...+.++.+.+.+.....-.-..
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p 77 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEEALQKALQQEP 77 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCc
Confidence 36889999997 4678899999999999988777777666532 33356999999999998888888875432100000
Q ss_pred EEEECCcccc-CCCCCCcEEEECHHHHHHHHHhhcccCcC--ceEEEecccch
Q psy8497 123 DYFIGGTQVE-RPKRPVQIVVGSPGRIKQMIKLKYLNMDS--VRLFIMDEADK 172 (2355)
Q Consensus 123 VvytGGkq~r-kqirq~DILVTTPErLLDLLdrr~LdLSk--IdLLIVDEAHR 172 (2355)
...... ........-|+|...+...+-+....... ..+=|.||...
T Consensus 78 ----~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 78 ----NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ----hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 000000 01111456789998876544443322222 24567898875
No 295
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.73 E-value=1 Score=58.64 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=58.3
Q ss_pred HHHHHHHCCCCCCcH----HHHHHHHHHHcCCc--EEEEccCCchHHHHHHHHHHHHHHh--cCCCCCeEEEEcccHHHH
Q psy8497 32 IRQGLQENGFVKESP----IQMAAFPYVLNGYD--AIVQSKSGTGKSIVFVVAALNKLIK--LPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRP----YQeEALn~LLSGRN--VILAAPTGSGKTLVALIAILerL~e--kr~qggRVLILVPTRALA 103 (2355)
|+..|...-=..++. +|.+-=+.|...++ +||++..|+|||.+++--+.-.|.. ..-.++++|||.|++.+.
T Consensus 194 L~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFl 273 (747)
T COG3973 194 LQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFL 273 (747)
T ss_pred HHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHH
Confidence 777777765555544 46665555555444 8999999999998887665544543 233566799999999997
Q ss_pred HHHHHHHHHHh
Q psy8497 104 VQITDVVRSVG 114 (2355)
Q Consensus 104 qQ~anwLREFg 114 (2355)
.-+.+.+=+++
T Consensus 274 eYis~VLPeLG 284 (747)
T COG3973 274 EYISRVLPELG 284 (747)
T ss_pred HHHHHhchhhc
Confidence 77776666664
No 296
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.70 E-value=1.4 Score=50.58 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=80.9
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCC
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqir 136 (2355)
....++|..++|-|||.+++..++..+. .+.+|+||-=.+--.. ......+ ...+.+.+..+-.+..... .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g----~G~~V~ivQFlKg~~~--~GE~~~l-~~l~~v~~~~~g~~~~~~~--~ 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG----HGKKVGVVQFIKGAWS--TGERNLL-EFGGGVEFHVMGTGFTWET--Q 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH----CCCeEEEEEEecCCCc--cCHHHHH-hcCCCcEEEECCCCCcccC--C
Confidence 4457999999999999888877777665 4778888875443210 1111111 1122333322111111111 1
Q ss_pred CCcEEEECHHHHHHHHH--hhcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 137 PVQIVVGSPGRIKQMIK--LKYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 137 q~DILVTTPErLLDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
.... ........+. ...+....+++||+||+=..++.++ ...+..++...|...-+|++.-.++.++.+...
T Consensus 92 ~~~e---~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 92 DRER---DIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CcHH---HHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 0000 0011111121 1333457889999999998887775 566777777777777777777677766555443
No 297
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.67 E-value=1.2 Score=58.12 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=27.0
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.++||||+|+|.... ...+..+++..+....+|+++
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3577899999999987543 344556666555555566555
No 298
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=90.64 E-value=0.5 Score=62.33 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=73.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
..|++-|.+++.. ...+++|.|..|+|||.+.+.-+...+.+......++|+|+-|+..+..+.+.+.++...
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~----- 75 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP----- 75 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc-----
Confidence 4689999999974 346799999999999987666555444432234467999999999998888888876421
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhccc-C-cCceEEEecccch
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLN-M-DSVRLFIMDEADK 172 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~Ld-L-SkIdLLIVDEAHR 172 (2355)
....|.|+|...|...+.+.... + ..-.+-|+|+...
T Consensus 76 --------------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 76 --------------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred --------------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 01347789988765433322111 0 1123457777653
No 299
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.58 E-value=2.4 Score=53.41 Aligned_cols=121 Identities=16% Similarity=0.216 Sum_probs=65.4
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
+-++|++|+|+|||....-.+. .+.. .+.++.+|. |.+. -+.||..+...+. +.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~-~l~~---~g~~V~lItaDtyR~gAveQLk~yae~lg-----vp-------------- 263 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGW-QLLK---QNRTVGFITTDTFRSGAVEQFQGYADKLD-----VE-------------- 263 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH---cCCeEEEEeCCccCccHHHHHHHHhhcCC-----CC--------------
Confidence 3478999999999966554443 3332 245566555 3332 3345544443321 11
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhH
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDN 206 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EI 206 (2355)
-+++.+|+.|...+..-. ....+++||||=+=+.... .....+..+.....+..-++.++|+.....
T Consensus 264 ---v~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d 331 (407)
T PRK12726 264 ---LIVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSAD 331 (407)
T ss_pred ---EEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHH
Confidence 122356776765554221 1245789999998765422 233444555555544444566777665433
No 300
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=90.53 E-value=1.3 Score=49.97 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=23.9
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCce-EEEEEeccC
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ-MLVVSATYS 203 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQ-ILLLSATLS 203 (2355)
..++|||||+|.+... ....+..++..+..... +++++++..
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4568999999987533 23344444544332333 466666643
No 301
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.51 E-value=4 Score=51.97 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=63.5
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHHHHH-HHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREIAVQ-ITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRALAqQ-~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
++|++|+|+|||.+..-.+..... ..+.+++++. +.+..+.+ ...+...+ ++.+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~---~~G~~V~Lit~Dt~R~aA~eQLk~yAe~l-----gvp~--------------- 282 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFL---HMGKSVSLYTTDNYRIAAIEQLKRYADTM-----GMPF--------------- 282 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---hcCCeEEEecccchhhhHHHHHHHHHHhc-----CCCe---------------
Confidence 678999999999776655544323 1244555554 33444332 22222222 1111
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc-ccChHHHHHHHHHhC---CCCceEEEEEeccChhHHHHHHH
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI-NTGFVEDITWIYSQL---PPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk-N~GF~SrLeeILs~L---ppnrQILLLSATLS~EILElLkK 212 (2355)
+.+.....+...+. ...+++||||=+-+.. +......+..++... .+...+|.|+||........+..
T Consensus 283 --~~~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 283 --YPVKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred --eehHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 11111222333332 2467899999766542 222334445555443 23356788999998865554443
No 302
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.47 E-value=1.9 Score=57.99 Aligned_cols=125 Identities=17% Similarity=0.236 Sum_probs=68.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc--H-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT--R-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT--R-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++|+|+|||.+....+...... ....++.+|.-- + ..+.|+..+.+.+. +.
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~~--~G~kkV~lit~Dt~RigA~eQL~~~a~~~g-----vp---------------- 244 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVAR--EGADQLALLTTDSFRIGALEQLRIYGRILG-----VP---------------- 244 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHHH--cCCCeEEEecCcccchHHHHHHHHHHHhCC-----CC----------------
Confidence 6789999999996654443322221 112345554432 2 23344444333321 11
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCCceEEEEEeccChhHHH-HHHHh
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMKQMLVVSATYSHDNLA-TLQKY 213 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~LppnrQILLLSATLS~EILE-lLkKf 213 (2355)
-.++.+|+.+.+.+.. +...++||||=+=+..... ....+..+.....+...+|.++||.....+. .+..|
T Consensus 245 -v~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 245 -VHAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred -ccccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 1223477777666642 3466899999988765332 2333444444455666788899998766554 33443
No 303
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.46 E-value=1.7 Score=49.96 Aligned_cols=106 Identities=22% Similarity=0.325 Sum_probs=59.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
.++|.+|+|+|||-. +.++...+.+. .++.+|+|+... .........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-~~~~~v~y~~~~-~f~~~~~~~~~~--------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-HPGKRVVYLSAE-EFIREFADALRD--------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-CTTS-EEEEEHH-HHHHHHHHHHHT---------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-cccccceeecHH-HHHHHHHHHHHc---------------------------
Confidence 389999999999964 44555555431 235567766543 443333333322
Q ss_pred EEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhC-CCCceEEEEEeccChh
Q psy8497 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQL-PPMKQMLVVSATYSHD 205 (2355)
Q Consensus 140 ILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~L-ppnrQILLLSATLS~E 205 (2355)
...+.+.+. +..+++||||.+|.+.... ....+..++..+ ....++|+.|..++..
T Consensus 86 ---~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 ---GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp ---TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred ---ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 011122211 3467899999999987543 344555555554 3356777777665543
No 304
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=4.1 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=19.4
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHh
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIK 85 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~e 85 (2355)
.+++|.++||+|||.+ +-.++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 4699999999999955 4455666654
No 305
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.31 E-value=0.97 Score=53.74 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.6
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.++++.+|+|+|||.++.
T Consensus 59 ~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 469999999999997764
No 306
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.26 E-value=2.5 Score=52.50 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=23.4
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
.....+|||||+|.|..... ..+...++..++...+|+++
T Consensus 125 ~~~~kvvIIdea~~l~~~~~-~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAF-NAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCHHHH-HHHHHHHhcCCCCeEEEEEe
Confidence 46778999999999864322 33444444443334444433
No 307
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.22 E-value=3.5 Score=48.06 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=25.5
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
..+.+||||||+.|... -...+..++..-+....+|+++-
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 67889999999988642 23445555555454555555443
No 308
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.19 E-value=1.5 Score=57.33 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=27.1
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.+|||||+|.|.... ...+.+.++..+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999986433 345555566656666666655
No 309
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=90.15 E-value=0.17 Score=57.06 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=48.3
Q ss_pred EEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE-EECCccccCCCCCCcE
Q psy8497 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY-FIGGTQVERPKRPVQI 140 (2355)
Q Consensus 62 ILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv-ytGGkq~rkqirq~DI 140 (2355)
||.|+-|-|||.+.- .++..+.. ....+++|.+|+..-++.+.+.+..-.... +.+... ...............|
T Consensus 1 VltA~RGRGKSa~lG-l~~a~l~~--~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~i 76 (177)
T PF05127_consen 1 VLTADRGRGKSAALG-LAAAALIQ--KGKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEKKKRIGQIIKLRFNKQRI 76 (177)
T ss_dssp -EEE-TTSSHHHHHH-HCCCCSSS-------EEEE-SS--S-HHHHHCC---------------------------CCC-
T ss_pred CccCCCCCCHHHHHH-HHHHHHHH--hcCceEEEecCCHHHHHHHHHHHHhhcccc-ccccccccccccccccccccceE
Confidence 688999999994433 33333331 122579999999988766666655433222 111100 0000000001113457
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
-+..|+.+... ....++||||||=.+. ...+..++. ... .++||.|..
T Consensus 77 ~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~---~~~-~vv~stTi~ 124 (177)
T PF05127_consen 77 EFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLR---RFP-RVVFSTTIH 124 (177)
T ss_dssp -B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC---CSS-EEEEEEEBS
T ss_pred EEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHh---hCC-EEEEEeecc
Confidence 77777766221 2245899999998654 233444432 233 455566654
No 310
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.13 E-value=1.1 Score=58.74 Aligned_cols=104 Identities=14% Similarity=0.225 Sum_probs=57.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
.++|.+++|+|||.... ++...+.. ...+.+++||.- ..++.++...+..
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~-~~~g~~V~Yita-eef~~el~~al~~--------------------------- 365 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARR-LYPGTRVRYVSS-EEFTNEFINSIRD--------------------------- 365 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHH-hCCCCeEEEeeH-HHHHHHHHHHHHh---------------------------
Confidence 48999999999996544 44444442 123456666543 4454333322211
Q ss_pred EEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCC-CceEEEEEeccC
Q psy8497 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPP-MKQMLVVSATYS 203 (2355)
Q Consensus 140 ILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lpp-nrQILLLSATLS 203 (2355)
...+.+... +..+++||||++|.+.... ....+..++..+.. ..+||+.|-..+
T Consensus 366 ---~~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P 421 (617)
T PRK14086 366 ---GKGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPP 421 (617)
T ss_pred ---ccHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCCh
Confidence 011112111 3457899999999886543 23445555555433 456666554444
No 311
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.09 E-value=0.54 Score=51.19 Aligned_cols=56 Identities=16% Similarity=0.266 Sum_probs=28.1
Q ss_pred ECHHHHHHHHHhhcccCcCceEEEecccchhc-c----cChHHHHHHHHHhCCC-CceEEEEEecc
Q psy8497 143 GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI-N----TGFVEDITWIYSQLPP-MKQMLVVSATY 202 (2355)
Q Consensus 143 TTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk-N----~GF~SrLeeILs~Lpp-nrQILLLSATL 202 (2355)
.+...+...+...... -+|||||+|.+. . ..+...+..++..+.. ....++++++.
T Consensus 104 ~~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 3444455555433222 489999999988 2 2244555555555322 23334455554
No 312
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=89.96 E-value=0.94 Score=51.06 Aligned_cols=140 Identities=10% Similarity=0.078 Sum_probs=71.6
Q ss_pred HHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC----CcE
Q psy8497 51 AFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK----NLH 121 (2355)
Q Consensus 51 ALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP----gLr 121 (2355)
.|..++. +.-++|.+++|+|||+.++..+...+.. .+.++|||+-. +-..++.+.+..++.... .-.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~---~ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~ 82 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKN---FGEKVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGK 82 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HT--EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTS
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhh---cCCcEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCC
Confidence 3455563 3458999999999997766656555552 15678888843 223455666665532110 001
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc----cChHHHHHHHHHhCCCCceEEE
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN----TGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN----~GF~SrLeeILs~LppnrQILL 197 (2355)
+..+.......... -..++.+...+.... .-...+.||||-.-.+.. ..+...+..+...+.....+++
T Consensus 83 l~~~d~~~~~~~~~------~~~~~~l~~~i~~~i-~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~l 155 (226)
T PF06745_consen 83 LKIIDAFPERIGWS------PNDLEELLSKIREAI-EELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTL 155 (226)
T ss_dssp EEEEESSGGGST-T------SCCHHHHHHHHHHHH-HHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEE
T ss_pred EEEEeccccccccc------ccCHHHHHHHHHHHH-HhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 22222222111100 233444444333211 112237999999988721 1234556666666655556666
Q ss_pred EEec
Q psy8497 198 VSAT 201 (2355)
Q Consensus 198 LSAT 201 (2355)
+++.
T Consensus 156 lt~~ 159 (226)
T PF06745_consen 156 LTSE 159 (226)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6665
No 313
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.93 E-value=2.4 Score=56.69 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=23.9
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
...+|||||+|++.... ...++..+. ..+++++++|...
T Consensus 109 ~~~IL~IDEIh~Ln~~q----QdaLL~~lE-~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ----QDALLPWVE-NGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCHHH----HHHHHHHhc-CceEEEEEecCCC
Confidence 45689999999875322 222333332 3567888887553
No 314
>PF13173 AAA_14: AAA domain
Probab=89.78 E-value=1.9 Score=45.02 Aligned_cols=37 Identities=11% Similarity=0.346 Sum_probs=24.2
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
.-.+|||||+|.+.+ +...+..+.... +..++++++-
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEcc
Confidence 345899999999875 446666666644 3456555443
No 315
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.73 E-value=2.2 Score=55.03 Aligned_cols=40 Identities=15% Similarity=0.372 Sum_probs=26.3
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.++||||+|+|....+ ..+.+.++..+....+|++|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998865332 34555555555556666655
No 316
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.72 E-value=2.6 Score=47.83 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=75.5
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH-HHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA-VQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA-qQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
++|..++|-|||.+++-.++..+. .+.+|+|+-=.+.-. .--...++.+ .+.+..+-.+..... ....
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~----~g~~v~ivQFlKg~~~~GE~~~l~~~-----~~~~~~~g~g~~~~~--~~~~ 76 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALG----HGKKVGVIQFIKGAWPNGERAAFEPH-----GVEFQVMGTGFTWET--QNRE 76 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHH----CCCeEEEEEEecCCcccChHHHHHhc-----CcEEEECCCCCeecC--CCcH
Confidence 677888999999888877776665 477788774333210 0001122221 222222111111100 0000
Q ss_pred EEEECHHHHHHHHH--hhcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 140 IVVGSPGRIKQMIK--LKYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 140 ILVTTPErLLDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
-........+. ...+....+++||+||+=..++.++ ...+..++...|...-+|++.-.++.++.+...
T Consensus 77 ---~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 77 ---ADTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred ---HHHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 00011111221 1333457889999999998877764 456777888888777888777777766655443
No 317
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=89.71 E-value=1.5 Score=52.14 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=21.0
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
.++|++|||+|||.+... +...+... ..+.+|.||.
T Consensus 196 vi~~vGptGvGKTTt~~k-La~~~~~~-~g~~~V~li~ 231 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK-LAARFVLE-HGNKKVALIT 231 (282)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHHH-cCCCeEEEEE
Confidence 477899999999966543 33333311 0124555554
No 318
>CHL00181 cbbX CbbX; Provisional
Probab=89.62 E-value=1.4 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=16.7
Q ss_pred CcEEEEccCCchHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAI 79 (2355)
.++|+.+|+|+|||.++-..+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 348999999999997766443
No 319
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=89.57 E-value=2.1 Score=52.39 Aligned_cols=134 Identities=11% Similarity=0.156 Sum_probs=66.5
Q ss_pred CcHHHHHHHHHHHc----C---CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh-c
Q psy8497 44 ESPIQMAAFPYVLN----G---YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG-A 115 (2355)
Q Consensus 44 LRPYQeEALn~LLS----G---RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg-k 115 (2355)
++|||...+..+.+ + +-.|+.+|.|.||+..+...+-..+....... . -|-. ...++.+. .
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-~---~Cg~-------C~sC~~~~~g 71 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-Q---PCGQ-------CHSCHLFQAG 71 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-C---CCCC-------CHHHHHHhcC
Confidence 46777777766653 3 24778999999999776644433333211111 1 1111 12233332 2
Q ss_pred ccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCc
Q psy8497 116 HVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193 (2355)
Q Consensus 116 ~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppnr 193 (2355)
..|++.++.-..+. .| .-+.+..+... ..-....+.++|||+||.|... -...+.++++.=|...
T Consensus 72 ~HPD~~~i~p~~~~---------~I---~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~ 138 (325)
T PRK06871 72 NHPDFHILEPIDNK---------DI---GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNT 138 (325)
T ss_pred CCCCEEEEccccCC---------CC---CHHHHHHHHHHHhhccccCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCe
Confidence 34454433211010 11 23334333322 1112357889999999998643 2355555665544444
Q ss_pred eEEEEEec
Q psy8497 194 QMLVVSAT 201 (2355)
Q Consensus 194 QILLLSAT 201 (2355)
.+|++|..
T Consensus 139 ~fiL~t~~ 146 (325)
T PRK06871 139 YFLLQADL 146 (325)
T ss_pred EEEEEECC
Confidence 44444443
No 320
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=89.46 E-value=2.4 Score=49.00 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=32.1
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
+.-++|.+++|+|||+.++..+...+. .+.+++|++..-. ..+..+.+..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g~~~~yi~~e~~-~~~~~~~~~~~ 74 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ----NGYSVSYVSTQLT-TTEFIKQMMSL 74 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh----CCCcEEEEeCCCC-HHHHHHHHHHh
Confidence 456899999999999665544443333 3567888885432 24444454444
No 321
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.44 E-value=1.8 Score=56.32 Aligned_cols=40 Identities=18% Similarity=0.377 Sum_probs=26.0
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.++||||+|+|.... ...+.++++.-+....+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 3578899999999886432 345555666555555555544
No 322
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.43 E-value=2.4 Score=48.45 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHH---c-CC-cEEEEccCCchHHHHHH
Q psy8497 43 KESPIQMAAFPYVL---N-GY-DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 43 eLRPYQeEALn~LL---S-GR-NVILAAPTGSGKTLVAL 76 (2355)
.+.+.+.+++..+. . +. .++|.+|.|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 44555666666543 2 23 48899999999995543
No 323
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.41 E-value=3.7 Score=49.79 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
+++++|.|++|+|||..+. ++...+.. .+..++++
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~---~g~~v~~~ 190 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAK---KGVSSTLL 190 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH---cCCCEEEE
Confidence 3579999999999997665 45555542 34444444
No 324
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.35 E-value=2.5 Score=52.87 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=28.2
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
..+.++||||+|+|.... ...+.++++.-+... ++++++|-+..+...+.
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPEDVLPTIR 165 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHHChHHHH
Confidence 567899999999986432 244555555433344 44444444444443333
No 325
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.28 E-value=2.6 Score=52.20 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=65.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCC------CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ------PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qg------gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk 133 (2355)
-.|+.+|.|.||+..+...+-..+.+..... ...|-+|+.-.. ..++.. ...|++.++.-..+.....
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~----c~~i~~--~~HPDl~~i~~~~~~~~~~ 116 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV----ARRIAA--GAHGGLLTLERSWNEKGKR 116 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH----HHHHHc--cCCCCeEEEeccccccccc
Confidence 4889999999999776644433333221111 123334443222 223322 3445665543221111100
Q ss_pred CCCCCcEEEECHHHHHHHHHhhc--ccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 134 PKRPVQIVVGSPGRIKQMIKLKY--LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 134 qirq~DILVTTPErLLDLLdrr~--LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
....| +.+.+..+...-. .....+.+|||||+|.|-.. -...+.++++..+....+|++|..+.
T Consensus 117 --~~~~I---~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 117 --LRTVI---TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred --ccccc---cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCch
Confidence 01123 3344444433211 12356789999999987533 34556666665555555666555543
No 326
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.25 E-value=4.8 Score=48.06 Aligned_cols=130 Identities=19% Similarity=0.294 Sum_probs=71.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHH-HHHHHHHHHHHhcccCCcEEEEEECCccccCCCC
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREI-AVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRAL-AqQ~anwLREFgk~APgLrVVvytGGkq~rkqir 136 (2355)
-+++++++|+|||.+..-.+. .+. ..+.++++|. +.+.- ..|...|..... +.+ +.....
T Consensus 74 vi~l~G~~G~GKTTt~akLA~-~l~---~~g~~V~li~~D~~r~~a~~ql~~~~~~~~-----i~~--~~~~~~------ 136 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLAN-KLK---KQGKSVLLAAGDTFRAAAIEQLEEWAKRLG-----VDV--IKQKEG------ 136 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHH---hcCCEEEEEeCCCCCHHHHHHHHHHHHhCC-----eEE--EeCCCC------
Confidence 367789999999976554443 333 2356677776 33333 345555555542 221 111111
Q ss_pred CCcEEEECHHH-HHHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCC------CCceEEEEEeccChhHHH
Q psy8497 137 PVQIVVGSPGR-IKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLP------PMKQMLVVSATYSHDNLA 208 (2355)
Q Consensus 137 q~DILVTTPEr-LLDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~Lp------pnrQILLLSATLS~EILE 208 (2355)
..|.. +...+.. .....+++||||=+-++... .....+..+....+ +..-++.++||...+...
T Consensus 137 ------~dp~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~ 208 (272)
T TIGR00064 137 ------ADPAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE 208 (272)
T ss_pred ------CCHHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH
Confidence 01211 2222221 11356789999999876532 23344555555444 556678899998776666
Q ss_pred HHHHhc
Q psy8497 209 TLQKYM 214 (2355)
Q Consensus 209 lLkKfL 214 (2355)
.+..+.
T Consensus 209 ~~~~f~ 214 (272)
T TIGR00064 209 QAKVFN 214 (272)
T ss_pred HHHHHH
Confidence 555544
No 327
>PF05729 NACHT: NACHT domain
Probab=89.23 E-value=3.1 Score=43.28 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=25.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCC--CeEEEEcccHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQ--PQTIILAPTREIA 103 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qg--gRVLILVPTRALA 103 (2355)
++|.|+.|+|||.. +..+...+....... ..+++....+.+.
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAEEEPPPSKFPYPFFFSLRDIS 46 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHhcCcccccceEEEEEeehhhh
Confidence 78999999999954 445555555332222 2355555555553
No 328
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.23 E-value=4.9 Score=46.63 Aligned_cols=145 Identities=16% Similarity=0.117 Sum_probs=59.2
Q ss_pred EEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH-HH---HHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA-VQ---ITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 62 ILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA-qQ---~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
||.++-|+|||.+..+.++..+.... ....++++ |+...+ .. ....+..+......+........ .... ...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~nG 76 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR-KIIL-PNG 76 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS-EEEE-TTS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC-cEEe-cCc
Confidence 57889999999887776766665311 12345555 555444 43 22333333322111221111111 1111 122
Q ss_pred CcEEEECHHHH--HHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEecc--ChhHHHHHHHh
Q psy8497 138 VQIVVGSPGRI--KQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY--SHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTPErL--LDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATL--S~EILElLkKf 213 (2355)
..|.+.+...- ...+ .-..+++|||||+-.+.+..+...+............ +++|.|+ ...........
T Consensus 77 ~~i~~~~~~~~~~~~~~-----~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~p~~~~~~~~~~~~~~ 150 (384)
T PF03237_consen 77 SRIQFRGADSPDSGDNI-----RGFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIR-MYISTPPNPGGWFYEIFQRN 150 (384)
T ss_dssp -EEEEES-----SHHHH-----HTS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--E-EEEEE---SSSHHHHHHHHH
T ss_pred eEEEEeccccccccccc-----cccccceeeeeecccCchHHHHHHHHhhhhcccCcce-EEeecCCCCCCceeeeeehh
Confidence 33666663321 1112 2356779999998877654444443333333322222 2444433 33333444444
Q ss_pred ccC
Q psy8497 214 MVD 216 (2355)
Q Consensus 214 Lrd 216 (2355)
+..
T Consensus 151 ~~~ 153 (384)
T PF03237_consen 151 LDD 153 (384)
T ss_dssp HCT
T ss_pred hcC
Confidence 443
No 329
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=89.21 E-value=3.3 Score=46.37 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=76.2
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH-HHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA-VQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA-qQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
+.|-.++|.|||.+++..++..+. .+.+|+||-=.+.-. .--...++.+ +++.+.. .+.........
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~----~g~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~--~g~~~~~~~~~-- 72 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALG----HGYRVGVVQFLKGGWKYGELKALERL----PNIEIHR--MGRGFFWTTEN-- 72 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEEEeCCCCccCHHHHHHhC----CCcEEEE--CCCCCccCCCC--
Confidence 566678899999888877776665 477888854333210 0001223332 3333332 22211110000
Q ss_pred EEEECHHHH---HHHHH--hhcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 140 IVVGSPGRI---KQMIK--LKYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 140 ILVTTPErL---LDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
..+.+ ...+. ...+....+++||+||+=...+.++ ...+..++...|...-+|+++-.++.++.+...
T Consensus 73 ----~~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 73 ----DEEDIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred ----hHHHHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 11111 11111 1333456889999999998776664 567777888888777888877777766655443
No 330
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.12 E-value=1.4 Score=49.90 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=26.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
|.-++|+|++|+|||...+-.++..+. ..+.+++|+..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~---~~g~~vly~s~ 50 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAK---KQGKPVLFFSL 50 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCceEEEeC
Confidence 445899999999999665544444443 12677888883
No 331
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.01 E-value=2.3 Score=56.03 Aligned_cols=39 Identities=21% Similarity=0.441 Sum_probs=24.5
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.++||||+|+|....+ ..+.++++.-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEEEEE
Confidence 4688999999999875433 33444455444445555544
No 332
>PRK05580 primosome assembly protein PriA; Validated
Probab=88.92 E-value=2 Score=56.83 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=65.9
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc-CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP 343 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr-GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP 343 (2355)
+.++||.++++..+..+.+.|.+. +..+..+||+++..+|..+...+..|..+|||+|.... -+.+..+.+||+-+..
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEeh 268 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEEH 268 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECCC
Confidence 358999999999999999988764 78899999999999999999999999999999997432 2567778888876643
No 333
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=88.89 E-value=2.8 Score=53.21 Aligned_cols=129 Identities=12% Similarity=0.198 Sum_probs=69.4
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
+++++++|+|||.++.-.+. ++.. .+.++++|+- .+.-+ .+|++.+.... ++.+......
T Consensus 103 i~lvG~~GvGKTTtaaKLA~-~l~~---~G~kV~lV~~D~~R~aA---~eQLk~~a~~~-~vp~~~~~~~---------- 164 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAY-YYQR---KGFKPCLVCADTFRAGA---FDQLKQNATKA-RIPFYGSYTE---------- 164 (429)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH---CCCCEEEEcCcccchhH---HHHHHHHhhcc-CCeEEeecCC----------
Confidence 67899999999966543333 3432 3556776663 34332 23333333222 2222211111
Q ss_pred cEEEECHHHH-HHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 139 QIVVGSPGRI-KQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 139 DILVTTPErL-LDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..|..+ ...+.. +....+++||||=+-++... .....+..+.....+..-++.++||..++....+..|
T Consensus 165 ----~dp~~i~~~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 165 ----SDPVKIASEGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred ----CCHHHHHHHHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 011111 112211 11245789999999876532 2345555666666666678889999887776666554
No 334
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.81 E-value=5.3 Score=51.49 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=30.0
Q ss_pred cCcCceEEEecccchhcccChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHH
Q psy8497 158 NMDSVRLFIMDEADKLINTGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 158 dLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkK 212 (2355)
.+...++++||.+=+............++... .+...+|.|+||........+..
T Consensus 331 ~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~ 386 (484)
T PRK06995 331 ELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQ 386 (484)
T ss_pred hccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHH
Confidence 35566799999976543221111222223222 13336788999988765554443
No 335
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.81 E-value=4.3 Score=47.41 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=23.9
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+|||||+|.+.... ...+..++...+....+|+++
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 45699999999885432 244555555555555555544
No 336
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=88.70 E-value=3.4 Score=44.77 Aligned_cols=54 Identities=22% Similarity=0.414 Sum_probs=30.5
Q ss_pred cCceEEEecccchhc-ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 160 DSVRLFIMDEADKLI-NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 160 SkIdLLIVDEAHRLk-N~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
...++||||....+. +......+..+.....+..-++.+.+.........+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 456789999998753 222334444444444445556667776555554444443
No 337
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.59 E-value=4.8 Score=51.11 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=61.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
-+.|.+|+|+|||......+...+.. .....-.+|.+.+.-+. ..+.+..++... ++.+
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~~~~-~~~~~v~~i~~d~~rig--alEQL~~~a~il-Gvp~----------------- 251 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIR-HGADKVALLTTDSYRIG--GHEQLRIYGKLL-GVSV----------------- 251 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEecCCcchh--HHHHHHHHHHHc-CCce-----------------
Confidence 48889999999996544333222221 11122344444442221 122232232221 2211
Q ss_pred EEEECHHHHHHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHH
Q psy8497 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 140 ILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLkK 212 (2355)
..+.++..+...+. .+...++++||.+=+.... .....+..+.....+...+|.|+||........+..
T Consensus 252 ~~v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~ 321 (420)
T PRK14721 252 RSIKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS 321 (420)
T ss_pred ecCCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH
Confidence 12233443433332 2556789999997433211 122333333222334456788999987766655443
No 338
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.23 E-value=2.3 Score=48.08 Aligned_cols=59 Identities=24% Similarity=0.314 Sum_probs=35.3
Q ss_pred HHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 51 AFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 51 ALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
.|..++. +..++|.+++|+|||..++..+...+. .+..++|+... ....++.+..+.++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~----~g~~~~~is~e-~~~~~i~~~~~~~g 71 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR----DGDPVIYVTTE-ESRESIIRQAAQFG 71 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh----cCCeEEEEEcc-CCHHHHHHHHHHhC
Confidence 4555553 456899999999999665544444433 35567777742 22344444544443
No 339
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=88.15 E-value=1.3 Score=58.35 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=67.6
Q ss_pred CCeEEEEEcccccHHHHHHHHHh----cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-ccccCCCCccEEEE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLAN----ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA-ARGIDAANVDLVIN 339 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrE----rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL-GEGLDLPaVDTVII 339 (2355)
+.++||.++|+..+..+++.|.. .++.+..++|+++..+|..++..+.+|.++|||+|.++ ...+.+..+.+||+
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 45899999999999877766654 46899999999999999999999999999999999754 45678889999997
Q ss_pred ecCCC
Q psy8497 340 LEIPH 344 (2355)
Q Consensus 340 yDSP~ 344 (2355)
-..+.
T Consensus 390 DE~Hr 394 (681)
T PRK10917 390 DEQHR 394 (681)
T ss_pred echhh
Confidence 66653
No 340
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.04 E-value=2 Score=55.17 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=64.7
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc-CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr-GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS 342 (2355)
+.++||.++++..+..+.+.|.+. +..+..+||+++..+|..+......|+..|+|+|...-. +-+..+.+||+-+.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEECC
Confidence 458999999999999999988764 678999999999999999999999999999999975432 45677888886654
No 341
>PRK10867 signal recognition particle protein; Provisional
Probab=87.92 E-value=6.1 Score=50.33 Aligned_cols=130 Identities=19% Similarity=0.246 Sum_probs=71.0
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHH-HHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREI-AVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRAL-AqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++++|+|||.++.-.+. ++.. ..+.++++|. +.+.. ..|+..|.... ++.+. ....
T Consensus 103 I~~vG~~GsGKTTtaakLA~-~l~~--~~G~kV~lV~~D~~R~aa~eQL~~~a~~~-----gv~v~--~~~~-------- 164 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK-YLKK--KKKKKVLLVAADVYRPAAIEQLKTLGEQI-----GVPVF--PSGD-------- 164 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH-HHHH--hcCCcEEEEEccccchHHHHHHHHHHhhc-----CCeEE--ecCC--------
Confidence 67899999999976554443 4442 1245566665 34443 35666665543 22221 1110
Q ss_pred CcEEEECHHHHH-HHHHhhcccCcCceEEEecccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhc
Q psy8497 138 VQIVVGSPGRIK-QMIKLKYLNMDSVRLFIMDEADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM 214 (2355)
Q Consensus 138 ~DILVTTPErLL-DLLdrr~LdLSkIdLLIVDEAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfL 214 (2355)
...|..+. ..+.. .....+++||||=+=++.. ......+..+.....+..-++.+.|+..++....+..+.
T Consensus 165 ----~~dp~~i~~~a~~~--a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~ 237 (433)
T PRK10867 165 ----GQDPVDIAKAALEE--AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFN 237 (433)
T ss_pred ----CCCHHHHHHHHHHH--HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHH
Confidence 01233332 22211 1234578999999877642 223345555555555555577788887766666666554
No 342
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=87.82 E-value=3.8 Score=46.53 Aligned_cols=134 Identities=12% Similarity=0.182 Sum_probs=68.0
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
+.|--..|=|||.+++-.+++.+- .+.+|+||-=.+.- .....+..+ ..++++.+.. .+... +
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G----~G~rV~ivQFlKg~--~~~GE~~~l-~~l~~~~~~~--~g~~f--------~ 68 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAG----HGMRVLIVQFLKGG--RYSGELKAL-KKLPNVEIER--FGKGF--------V 68 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHC----TT--EEEEESS--S--S--HHHHHH-GGGT--EEEE----TT----------
T ss_pred EEEEeCCCCCchHHHHHHHHHHHh----CCCEEEEEEEecCC--CCcCHHHHH-HhCCeEEEEE--cCCcc--------c
Confidence 566677899999988888877665 47889999876651 011222222 2333333322 11111 1
Q ss_pred EEECHH-----HHHHHHHh--hcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 141 VVGSPG-----RIKQMIKL--KYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 141 LVTTPE-----rLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
.-..++ .+...+.. ..+....+++||+||+=..++.++ ...+..++...|...-+|++.-.++..+.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 69 WRMNEEEEDRAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp --GGGHHHHHHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 111111 12222221 334457899999999998887775 566777777777777778777777766555443
No 343
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.73 E-value=3.7 Score=53.56 Aligned_cols=40 Identities=10% Similarity=0.299 Sum_probs=26.5
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
.....+|||||+|+|.... ...+..+++..+....+|++|
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999986533 345556666555556666655
No 344
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=87.67 E-value=0.76 Score=54.13 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=15.1
Q ss_pred cEEEEccCCchHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVV 77 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALI 77 (2355)
++|+.+|.|+|||..+.+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 599999999999966553
No 345
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.57 E-value=6.8 Score=48.65 Aligned_cols=129 Identities=18% Similarity=0.264 Sum_probs=76.6
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++..|+|||.. +.-+..++. ..+.++|+.+ ..|+ .+.|+..|-+..+ ..++. +.... .+
T Consensus 142 il~vGVNG~GKTTT-IaKLA~~l~---~~g~~VllaA~DTFRAaAiEQL~~w~er~g-----v~vI~--~~~G~----Dp 206 (340)
T COG0552 142 ILFVGVNGVGKTTT-IAKLAKYLK---QQGKSVLLAAGDTFRAAAIEQLEVWGERLG-----VPVIS--GKEGA----DP 206 (340)
T ss_pred EEEEecCCCchHhH-HHHHHHHHH---HCCCeEEEEecchHHHHHHHHHHHHHHHhC-----CeEEc--cCCCC----Cc
Confidence 67799999999955 434444444 3567777776 3444 4477777777763 33322 21100 00
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhCCCCc------eEEEEEeccChhHHHHH
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMK------QMLVVSATYSHDNLATL 210 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~Lppnr------QILLLSATLS~EILElL 210 (2355)
.-| +.+.+... .-+.+++||+|=|=||-+.. .-..+.+|.+-+.+.. -++.+=||..++.+.+.
T Consensus 207 AaV-------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA 277 (340)
T COG0552 207 AAV-------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA 277 (340)
T ss_pred HHH-------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH
Confidence 111 22333322 24678899999999987653 3455555555554433 33444899999888877
Q ss_pred HHh
Q psy8497 211 QKY 213 (2355)
Q Consensus 211 kKf 213 (2355)
+.|
T Consensus 278 k~F 280 (340)
T COG0552 278 KIF 280 (340)
T ss_pred HHH
Confidence 765
No 346
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=87.54 E-value=1.7 Score=53.23 Aligned_cols=63 Identities=16% Similarity=0.326 Sum_probs=42.0
Q ss_pred HHHCCCCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 36 LQENGFVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 36 Lqa~GF~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
+...|. +.+.|.+.|..+.. +.++||+++||+||| .++-+++..+... ....++++|=...+|
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKT-Tll~aL~~~i~~~-~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKT-TLANAVIAEIVAS-APEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHHHhcC-CCCceEEEecCCccc
Confidence 334443 67788888776665 568999999999999 4455666655321 234567776666666
No 347
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=87.39 E-value=0.48 Score=52.74 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=11.5
Q ss_pred EEEEccCCchHHH
Q psy8497 61 AIVQSKSGTGKSI 73 (2355)
Q Consensus 61 VILAAPTGSGKTL 73 (2355)
++|.|+.|+|||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 4799999999994
No 348
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=87.37 E-value=1.5 Score=50.00 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=37.9
Q ss_pred HHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 50 AAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 50 EALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..|..++.| .-++|.+++|+|||..+...+...+. .+.+++|+.-.... .++.+.+..+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~----~g~~~~y~~~e~~~-~~~~~~~~~~g 76 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK----QGKKVYVITTENTS-KSYLKQMESVK 76 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh----CCCEEEEEEcCCCH-HHHHHHHHHCC
Confidence 455666643 34888999999999766655444443 36778888754333 44555555553
No 349
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.37 E-value=3.8 Score=54.09 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=24.2
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
.....+|||||+|.|.... ...+...++.-+...-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999986432 234444455444444444444
No 350
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.34 E-value=2.9 Score=51.18 Aligned_cols=144 Identities=11% Similarity=0.077 Sum_probs=71.0
Q ss_pred CCcHHHHHHHHHHHc----CC---cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh-
Q psy8497 43 KESPIQMAAFPYVLN----GY---DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG- 114 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GR---NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg- 114 (2355)
.++|||...+..+.+ ++ -.|+.+|.|.||+..+.. +...|.-........-=.|+. ++.+.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC~~~~~~~~Cg~C~s----------C~~~~~ 70 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMCQQPQGHKSCGHCRG----------CQLMQA 70 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCCHH----------HHHHHc
Confidence 467888888877753 32 378999999999976654 444443211111111111222 22221
Q ss_pred cccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhh--cccCcCceEEEecccchhcccChHHHHHHHHHhCCCC
Q psy8497 115 AHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLK--YLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr--~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppn 192 (2355)
...|++..+.-.++. . ..+-+.+..+...- .-....+.++|||+|+.|-.. -.+.+.++++.=+..
T Consensus 71 g~HPD~~~i~p~~~~--------~---~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~ 138 (334)
T PRK07993 71 GTHPDYYTLTPEKGK--------S---SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDA-AANALLKTLEEPPEN 138 (334)
T ss_pred CCCCCEEEEeccccc--------c---cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCC
Confidence 334555543221110 0 11233344333221 112467889999999998643 235555555553333
Q ss_pred ceEEEEEeccChhHHHHH
Q psy8497 193 KQMLVVSATYSHDNLATL 210 (2355)
Q Consensus 193 rQILLLSATLS~EILElL 210 (2355)
.-+|++| .-+..++..+
T Consensus 139 t~fiL~t-~~~~~lLpTI 155 (334)
T PRK07993 139 TWFFLAC-REPARLLATL 155 (334)
T ss_pred eEEEEEE-CChhhChHHH
Confidence 4444444 4333343333
No 351
>KOG0738|consensus
Probab=87.27 E-value=1.9 Score=54.15 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=29.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
+.+++++|.|+|||+.+=..+- ..+.+.+=|-..+|+.-|.-.-++
T Consensus 246 kgvLm~GPPGTGKTlLAKAvAT--------Ec~tTFFNVSsstltSKwRGeSEK 291 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVAT--------ECGTTFFNVSSSTLTSKWRGESEK 291 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHH--------hhcCeEEEechhhhhhhhccchHH
Confidence 5699999999999966542222 123566777777775544433333
No 352
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=87.19 E-value=2.6 Score=52.07 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHHcC-----CcEEEEccCCchHHHHHHHHHH
Q psy8497 44 ESPIQMAAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAAL 80 (2355)
Q Consensus 44 LRPYQeEALn~LLSG-----RNVILAAPTGSGKTLVALIAIL 80 (2355)
++|||...+..+.+- +..++.+|.|.||+..+...+-
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~ 43 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQ 43 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHH
Confidence 478888888887752 2478999999999977664443
No 353
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=87.18 E-value=7.6 Score=44.68 Aligned_cols=51 Identities=24% Similarity=0.398 Sum_probs=32.2
Q ss_pred EEEEccCCchHHHHHHHHHHHHHH--------hcCCCCCeEEEEc---ccHHHHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLI--------KLPVQQPQTIILA---PTREIAVQITDVVR 111 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~--------ekr~qggRVLILV---PTRALAqQ~anwLR 111 (2355)
.+|++|.|+|||..++..++.... .......+|||+. |...+...+.....
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 689999999999776655554321 1123467899998 55555444443333
No 354
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.17 E-value=3.2 Score=53.45 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=17.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ 84 (2355)
.|+.+|.|+|||.++. ++...+.
T Consensus 39 ~Lf~GppGtGKTTlA~-~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR-LIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHh
Confidence 5999999999997765 4444443
No 355
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.07 E-value=4.9 Score=53.68 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=15.4
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.++||.+|+|+|||.++-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 579999999999996654
No 356
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=86.92 E-value=3.9 Score=52.35 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHcCCcEEEEccCCchHHHHHH
Q psy8497 44 ESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 44 LRPYQeEALn~LLSGRNVILAAPTGSGKTLVAL 76 (2355)
+.......+..+..++++|+.+|+|+|||.++.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667777788999999999999997665
No 357
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=86.85 E-value=1.8 Score=56.65 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=67.2
Q ss_pred CCeEEEEEcccccHHHHHHHHHh----cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-ccccCCCCccEEEE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLAN----ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA-ARGIDAANVDLVIN 339 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrE----rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL-GEGLDLPaVDTVII 339 (2355)
+.++||.++++..+..+++.+.+ .++++..++|+++..+|..+++.+.+|.++|||+|..+ ...+.+..+.+||+
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 35899999999999887776654 47899999999999999999999999999999999754 34577888998887
Q ss_pred ecCCC
Q psy8497 340 LEIPH 344 (2355)
Q Consensus 340 yDSP~ 344 (2355)
-..+.
T Consensus 364 DEaH~ 368 (630)
T TIGR00643 364 DEQHR 368 (630)
T ss_pred echhh
Confidence 66653
No 358
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.74 E-value=3.7 Score=54.29 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=16.7
Q ss_pred cEEEEccCCchHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAAL 80 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAIL 80 (2355)
.+|+.+|.|+|||.++.+.+-
T Consensus 40 a~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478899999999987765443
No 359
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=86.64 E-value=3.1 Score=51.79 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=55.3
Q ss_pred HHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE
Q psy8497 50 AAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124 (2355)
Q Consensus 50 EALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv 124 (2355)
..|+.++.+ .-++|.+++|+|||...+..+ ..+. ..+.++|||.-.. -..|+......+.....
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a-~~~a---~~g~~VlYvs~EE-s~~qi~~Ra~rlg~~~~------ 137 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVA-ARLA---KRGGKVLYVSGEE-SPEQIKLRADRLGISTE------ 137 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHH-HHHH---hcCCeEEEEECCc-CHHHHHHHHHHcCCCcc------
Confidence 456677653 348899999999996555433 3333 2346789987543 33555555555532111
Q ss_pred EECCccccCCCCCCcEEE---ECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 125 FIGGTQVERPKRPVQIVV---GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 125 ytGGkq~rkqirq~DILV---TTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
.+.+ +..+.+...+. ....++||||+++.+.
T Consensus 138 --------------~l~l~~e~~le~I~~~i~-----~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 138 --------------NLYLLAETNLEDILASIE-----ELKPDLVIIDSIQTVY 171 (372)
T ss_pred --------------cEEEEccCcHHHHHHHHH-----hcCCcEEEEcchHHhh
Confidence 1112 12344444442 2356799999999875
No 360
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.63 E-value=1.2 Score=49.88 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=27.9
Q ss_pred HHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 51 AFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 51 ALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
...|+..+.+++|.+++|+|||..+... ...+.. .+..+++ ++...|+
T Consensus 40 ~~~~~~~~~~l~l~G~~G~GKThLa~ai-~~~~~~---~g~~v~f-~~~~~L~ 87 (178)
T PF01695_consen 40 ALEFIENGENLILYGPPGTGKTHLAVAI-ANEAIR---KGYSVLF-ITASDLL 87 (178)
T ss_dssp HH-S-SC--EEEEEESTTSSHHHHHHHH-HHHHHH---TT--EEE-EEHHHHH
T ss_pred cCCCcccCeEEEEEhhHhHHHHHHHHHH-HHHhcc---CCcceeE-eecCcee
Confidence 3344456788999999999999887644 444442 3455555 4555663
No 361
>PRK11823 DNA repair protein RadA; Provisional
Probab=86.62 E-value=2.5 Score=53.60 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=56.5
Q ss_pred HHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE
Q psy8497 50 AAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124 (2355)
Q Consensus 50 EALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv 124 (2355)
..|+.++.| .-++|.+++|+|||...+..+. .+. ..+.++||+.-.- -..|+......+......
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~-~~a---~~g~~vlYvs~Ee-s~~qi~~ra~rlg~~~~~----- 136 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAA-RLA---AAGGKVLYVSGEE-SASQIKLRAERLGLPSDN----- 136 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHH-HHH---hcCCeEEEEEccc-cHHHHHHHHHHcCCChhc-----
Confidence 456777753 3478999999999965554433 333 2356889988543 345666666555322111
Q ss_pred EECCccccCCCCCCcEEEE---CHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 125 FIGGTQVERPKRPVQIVVG---SPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 125 ytGGkq~rkqirq~DILVT---TPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
+.+. ..+.+...+. -...++||||+++.+..
T Consensus 137 ---------------l~~~~e~~l~~i~~~i~-----~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 137 ---------------LYLLAETNLEAILATIE-----EEKPDLVVIDSIQTMYS 170 (446)
T ss_pred ---------------EEEeCCCCHHHHHHHHH-----hhCCCEEEEechhhhcc
Confidence 1122 2233434332 23567999999997753
No 362
>PRK04195 replication factor C large subunit; Provisional
Probab=86.58 E-value=3.5 Score=52.37 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=15.4
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.+||.||.|+|||.++-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999995544
No 363
>PRK04328 hypothetical protein; Provisional
Probab=86.54 E-value=4.2 Score=47.49 Aligned_cols=60 Identities=27% Similarity=0.301 Sum_probs=38.7
Q ss_pred HHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 50 AAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 50 EALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..|..++.| ..++|.+++|+|||+.++..+...+. .+.++|||.- .+-..++.+.+..++
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~----~ge~~lyis~-ee~~~~i~~~~~~~g 74 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----MGEPGVYVAL-EEHPVQVRRNMRQFG 74 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh----cCCcEEEEEe-eCCHHHHHHHHHHcC
Confidence 356666643 45888999999999766655555444 3567788773 233344566666664
No 364
>KOG2028|consensus
Probab=86.52 E-value=1.8 Score=53.84 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=29.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
.+|+.+|.|+|||..+-+.+... ....-++|-+.-+.+-++.+...+++
T Consensus 164 SmIlWGppG~GKTtlArlia~ts----k~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTS----KKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhc----CCCceEEEEEeccccchHHHHHHHHH
Confidence 48999999999996654333211 11224466666666665554444443
No 365
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.44 E-value=3.4 Score=52.85 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=14.9
Q ss_pred EEEEccCCchHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVA 78 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIA 78 (2355)
+|+.||.|+|||.++.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 39 YIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999766543
No 366
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.39 E-value=4.5 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=17.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ 84 (2355)
..|+.||.|+|||..+. .+...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~-~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR-IFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHhc
Confidence 47899999999995544 4444444
No 367
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=86.02 E-value=6.8 Score=45.56 Aligned_cols=139 Identities=16% Similarity=0.153 Sum_probs=76.3
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHH-HHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQI-TDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~-anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
++|.-..|=|||.+++-.+++.+- .+.+++||-=.+--...- ...+..|.. .+....+--+...+......+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~G----hG~rv~vvQFiKg~~~~GE~~~~~~~~~---~v~~~~~~~g~tw~~~~~~~d 103 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALG----HGLRVGVVQFIKGGWKYGEEAALEKFGL---GVEFHGMGEGFTWETQDREAD 103 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhc----CCCEEEEEEEeecCcchhHHHHHHhhcc---ceeEEecCCceeCCCcCcHHH
Confidence 677788899999999888887765 477888876443221111 122222210 111111111111111111122
Q ss_pred EEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 140 IVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 140 ILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
+ ......+.. ..+.-..+++||+||+-..+..++ ...+..++...|...-+|++.-..++.+.+...
T Consensus 104 ~-----~aa~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 104 I-----AAAKAGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred H-----HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 2 112222211 233445799999999998777664 566777777777777777766666666665554
No 368
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=85.90 E-value=0.56 Score=52.61 Aligned_cols=36 Identities=11% Similarity=0.299 Sum_probs=24.4
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.++.+||.+|||.- ++-.+..+. ..+.++|++-|..
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~---~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYE---IAGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHH---HTT-EEEEEEEST
T ss_pred EEEECCcCChhHHH-HHHHHHHHH---hCCCeEEEEEecc
Confidence 47889999999944 444444444 2567788888864
No 369
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.87 E-value=4 Score=54.97 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=19.9
Q ss_pred HHHHHHHc--CCcEEEEccCCchHHHHHHHH
Q psy8497 50 AAFPYVLN--GYDAIVQSKSGTGKSIVFVVA 78 (2355)
Q Consensus 50 EALn~LLS--GRNVILAAPTGSGKTLVALIA 78 (2355)
+.+..|.+ ..++||.+|+|+|||.++-..
T Consensus 197 ~~i~iL~r~~~~n~LLvGppGvGKT~lae~l 227 (758)
T PRK11034 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHH
Confidence 33444443 357999999999999665433
No 370
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=85.85 E-value=2 Score=52.29 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=42.4
Q ss_pred HHHHCCCCCCcHHHHHHHHHHH-cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 35 GLQENGFVKESPIQMAAFPYVL-NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 35 ~Lqa~GF~eLRPYQeEALn~LL-SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
.|-..|+ +.+.|.+.|..+. .+.++||+++||+||| .++-+++..+.. .....++++|-.+.+|
T Consensus 126 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~-~~~~~rivtIEd~~El 190 (319)
T PRK13894 126 QYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVI-QDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhh-cCCCceEEEEcCCCcc
Confidence 3334454 6678888887655 4678999999999999 555566554431 1234567777777666
No 371
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=85.78 E-value=2.3 Score=49.08 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=26.0
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.+.-++|.+++|+|||...+..+...+. ..+.+++|+.-
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~---~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLIT---QHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH---hcCceEEEEEc
Confidence 4556899999999999655544443322 12567888874
No 372
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=85.61 E-value=1.6 Score=53.42 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=30.7
Q ss_pred EEEEccCCchHHHHHHHHHHH-HHHhcCCCCCeEEEEcccHHHH--HHHHHHHHHHh
Q psy8497 61 AIVQSKSGTGKSIVFVVAALN-KLIKLPVQQPQTIILAPTREIA--VQITDVVRSVG 114 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILe-rL~ekr~qggRVLILVPTRALA--qQ~anwLREFg 114 (2355)
++|-+|||+||+ ..+-.++. .+. ......|++|+|.+-.+ +++..|-.++.
T Consensus 90 ~~VYGPTG~GKS-qLlRNLis~~lI--~P~PETVfFItP~~~mIpp~E~~aW~~Ql~ 143 (369)
T PF02456_consen 90 GVVYGPTGSGKS-QLLRNLISCQLI--QPPPETVFFITPQKDMIPPQEITAWETQLC 143 (369)
T ss_pred EEEECCCCCCHH-HHHHHhhhcCcc--cCCCCceEEECCCCCCCCHHHHHHHHHHHH
Confidence 688999999999 32222221 111 12345699999988665 44455555543
No 373
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=85.54 E-value=9.7 Score=44.27 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=30.5
Q ss_pred HHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 51 AFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 51 ALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.|+.++.| .=+||+|.+|.|||..++-.++..+.. .+.+|+|++.
T Consensus 8 ~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~---~~~~vly~Sl 56 (259)
T PF03796_consen 8 ALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALN---GGYPVLYFSL 56 (259)
T ss_dssp HHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHT---TSSEEEEEES
T ss_pred HHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHh---cCCeEEEEcC
Confidence 34555543 338999999999996666555555542 2478999986
No 374
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.47 E-value=6.8 Score=51.26 Aligned_cols=38 Identities=16% Similarity=0.387 Sum_probs=22.3
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILL 197 (2355)
.....+|||||+|.|.... ...+...+...+....+|+
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCeEEEE
Confidence 3567899999999886432 2334444444443333343
No 375
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=85.46 E-value=2.8 Score=51.16 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=13.9
Q ss_pred CcEEEEccCCchHHHH
Q psy8497 59 YDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 59 RNVILAAPTGSGKTLV 74 (2355)
.+++|+++++-|||.+
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 4699999999999954
No 376
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.39 E-value=4.8 Score=52.43 Aligned_cols=40 Identities=18% Similarity=0.401 Sum_probs=27.7
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+.++||||+|+|.... ...+..+++..+....+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 3578899999999986433 345566666666666666655
No 377
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=85.32 E-value=3.5 Score=53.61 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=15.8
Q ss_pred cEEEEccCCchHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAI 79 (2355)
-.|+.+|.|+|||.++-+.+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999997766444
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=85.27 E-value=10 Score=48.40 Aligned_cols=130 Identities=23% Similarity=0.278 Sum_probs=69.6
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++++|+|||.++.-.+.. +.. ..+.++++|. +.+. ...|+..+..... +.+.... .
T Consensus 102 i~~vG~~GsGKTTtaakLA~~-l~~--~~g~kV~lV~~D~~R~~a~~QL~~~a~~~g-----vp~~~~~--~-------- 163 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY-LKK--KQGKKVLLVACDLYRPAAIEQLKVLGQQVG-----VPVFALG--K-------- 163 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH-HHH--hCCCeEEEEeccccchHHHHHHHHHHHhcC-----CceEecC--C--------
Confidence 788999999999776544443 321 1245566655 3333 3355555554432 2211100 0
Q ss_pred CcEEEECHHHH-HHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhc
Q psy8497 138 VQIVVGSPGRI-KQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM 214 (2355)
Q Consensus 138 ~DILVTTPErL-LDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfL 214 (2355)
-..|..+ ...+.. +....+++||||=+=++... .....+..+...+.+..-++.+.|+...+....+..+.
T Consensus 164 ----~~~P~~i~~~al~~--~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~ 236 (428)
T TIGR00959 164 ----GQSPVEIARRALEY--AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFN 236 (428)
T ss_pred ----CCCHHHHHHHHHHH--HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHH
Confidence 0123222 222221 12345789999999876532 23445555555555555677788887766666665543
No 379
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=85.23 E-value=1.1 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=15.2
Q ss_pred EEEEccCCchHHHHHHHH-HHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVA-ALNKLI 84 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIA-ILerL~ 84 (2355)
.+++|.+|+|||+.++.. ++..+.
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~ 27 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALK 27 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGG
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHh
Confidence 478999999999877666 444333
No 380
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.19 E-value=19 Score=44.25 Aligned_cols=129 Identities=20% Similarity=0.262 Sum_probs=67.4
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc-c-cHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA-P-TRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV-P-TRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
++|.+|+|+|||.+.. .+...+. ..+.+|+++. . .+. .+.|+..|.... ++.++.. ....
T Consensus 117 i~lvGpnGsGKTTt~~-kLA~~l~---~~g~~V~Li~~D~~r~~a~eql~~~a~~~-----~i~~~~~--~~~~------ 179 (318)
T PRK10416 117 ILVVGVNGVGKTTTIG-KLAHKYK---AQGKKVLLAAGDTFRAAAIEQLQVWGERV-----GVPVIAQ--KEGA------ 179 (318)
T ss_pred EEEECCCCCcHHHHHH-HHHHHHH---hcCCeEEEEecCccchhhHHHHHHHHHHc-----CceEEEe--CCCC------
Confidence 6788999999996544 3333333 2356677765 2 233 235555554443 2222111 1000
Q ss_pred CcEEEECHH-HHHHHHHhhcccCcCceEEEecccchhcccC-hHHHHHHHHHhC------CCCceEEEEEeccChhHHHH
Q psy8497 138 VQIVVGSPG-RIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQL------PPMKQMLVVSATYSHDNLAT 209 (2355)
Q Consensus 138 ~DILVTTPE-rLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~SrLeeILs~L------ppnrQILLLSATLS~EILEl 209 (2355)
.|. ...+.+... ....+++||||=+-++.... ....+..+...+ .+..-++.++||...+....
T Consensus 180 ------dpa~~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~ 251 (318)
T PRK10416 180 ------DPASVAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ 251 (318)
T ss_pred ------CHHHHHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHH
Confidence 111 111222111 13667899999998765332 223444444322 23446788999988776666
Q ss_pred HHHhc
Q psy8497 210 LQKYM 214 (2355)
Q Consensus 210 LkKfL 214 (2355)
+..+.
T Consensus 252 a~~f~ 256 (318)
T PRK10416 252 AKAFH 256 (318)
T ss_pred HHHHH
Confidence 65543
No 381
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=85.02 E-value=6.2 Score=46.50 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=32.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc---cHHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP---TREIAVQITDVVRSV 113 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP---TRALAqQ~anwLREF 113 (2355)
.-++|.+++|+|||..++..+...+. .+.+++|+.- ...+..++......+
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~----~Ge~vlyis~Ee~~~~~~~~l~~~a~~~ 90 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQAS----RGNPVLFVTVESPANFVYTSLKERAKAM 90 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHh----CCCcEEEEEecCCchHHHHHHHHHHHHc
Confidence 34889999999999766654444433 3668888883 334444444444444
No 382
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=84.62 E-value=4.6 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=18.1
Q ss_pred ccccCcchhhhhhccccCCCCC
Q psy8497 703 DNKLTPVDFDYINDFVNQTPSE 724 (2355)
Q Consensus 703 ~~~~~~~~~~~~~~~~n~~~~~ 724 (2355)
+.++++....|.++|.|....+
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~ 491 (605)
T PRK05896 470 DIELSKNMLQKFNKFKNEESAE 491 (605)
T ss_pred HHHhhhHHHHHHHhhhhhhhhh
Confidence 4477888999999999987776
No 383
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=84.59 E-value=4.1 Score=51.53 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=30.6
Q ss_pred CceEEEecccchhccc-ChHHHHHHHHHhCCCC-ceEEEEEeccChhH
Q psy8497 161 SVRLFIMDEADKLINT-GFVEDITWIYSQLPPM-KQMLVVSATYSHDN 206 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~-GF~SrLeeILs~Lppn-rQILLLSATLS~EI 206 (2355)
.+++++||.++.+... .....+..++..+... .|+|+.|..++...
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 6789999999988755 2345555666665443 47777776666443
No 384
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=84.52 E-value=6.5 Score=48.25 Aligned_cols=136 Identities=17% Similarity=0.193 Sum_probs=69.0
Q ss_pred CCcHHHHHHHHHHHc----CC---cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH-h
Q psy8497 43 KESPIQMAAFPYVLN----GY---DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV-G 114 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----GR---NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF-g 114 (2355)
.++|||...+..+.+ ++ -.++.+|.|.||+..+...+-..+.... ... -|.. ...++.+ .
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~-~~~----~Cg~-------C~sC~~~~~ 70 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNY-QSE----ACGF-------CHSCELMQS 70 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCC-CCC----CCCC-------CHHHHHHHc
Confidence 567888888877663 32 4889999999999666544433333211 111 1111 1122222 1
Q ss_pred cccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccChHHHHHHHHHhCCCC
Q psy8497 115 AHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192 (2355)
Q Consensus 115 k~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppn 192 (2355)
...|++.++.-.+.. . .| +-+.+..+... ..-....+.++|||+||+|... -.+.+.++++.=+..
T Consensus 71 g~HPD~~~i~p~~~~---~-----~I---~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~ 138 (319)
T PRK06090 71 GNHPDLHVIKPEKEG---K-----SI---TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNES-ASNALLKTLEEPAPN 138 (319)
T ss_pred CCCCCEEEEecCcCC---C-----cC---CHHHHHHHHHHHhhCcccCCceEEEecchhhhCHH-HHHHHHHHhcCCCCC
Confidence 334555443221100 0 11 23334333221 1112456889999999998643 235555666654444
Q ss_pred ceEEEEEecc
Q psy8497 193 KQMLVVSATY 202 (2355)
Q Consensus 193 rQILLLSATL 202 (2355)
..+|++|..+
T Consensus 139 t~fiL~t~~~ 148 (319)
T PRK06090 139 CLFLLVTHNQ 148 (319)
T ss_pred eEEEEEECCh
Confidence 4455554443
No 385
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=84.51 E-value=2.8 Score=50.61 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 43 KESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 43 eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
.+.+-|.+.|..+.+ +.++||+++||+||| .++-+++..+.. .....++++|=-..+|
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~al~~~i~~-~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKT-TLANALLAEIAK-NDPTDRVVIIEDTREL 174 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHHhhc-cCCCceEEEECCchhh
Confidence 355666676666554 568999999999999 445566655542 1234577777777776
No 386
>KOG0739|consensus
Probab=84.22 E-value=7.5 Score=47.85 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=68.3
Q ss_pred HHHHcCC-----cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEEC
Q psy8497 53 PYVLNGY-----DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIG 127 (2355)
Q Consensus 53 n~LLSGR-----NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytG 127 (2355)
|.++.++ .++|.+|.|+||+..+-..+- ....+.+-|-++.|+..|.-.-+++...
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT--------EAnSTFFSvSSSDLvSKWmGESEkLVkn----------- 216 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT--------EANSTFFSVSSSDLVSKWMGESEKLVKN----------- 216 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh--------hcCCceEEeehHHHHHHHhccHHHHHHH-----------
Confidence 4455553 389999999999954332221 1224677788888865544443333110
Q ss_pred CccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC---hHHHHHHH----HHhC----CCCceEE
Q psy8497 128 GTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG---FVEDITWI----YSQL----PPMKQML 196 (2355)
Q Consensus 128 Gkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G---F~SrLeeI----Ls~L----ppnrQIL 196 (2355)
|..+.+ -....+|.|||++.|.... -.....+| +-.+ ...--+|
T Consensus 217 --------------------LFemAR-----e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 217 --------------------LFEMAR-----ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred --------------------HHHHHH-----hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 222222 2344589999999775321 11111122 2222 1234688
Q ss_pred EEEeccChhHHHH-HHHhccCCeeecc
Q psy8497 197 VVSATYSHDNLAT-LQKYMVDPLLIRP 222 (2355)
Q Consensus 197 LLSATLS~EILEl-LkKfLrdPvIIrV 222 (2355)
.|.||-.++.+.. +.+.+...+.|..
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYIPL 298 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYIPL 298 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceeccC
Confidence 9999988887754 4444444444433
No 387
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=84.09 E-value=3.8 Score=50.05 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=16.1
Q ss_pred cEEEEccCCchHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAI 79 (2355)
.+++.+|.|+|||..+.+.+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHH
Confidence 49999999999997665443
No 388
>PRK14873 primosome assembly protein PriA; Provisional
Probab=84.04 E-value=5.4 Score=53.13 Aligned_cols=77 Identities=17% Similarity=0.064 Sum_probs=64.5
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcC--CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANAN--FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErG--IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS 342 (2355)
+.++||.++.+..+..+...|.... ..+..+|++++..+|.+.......|+.+|+|+|+.+ .=+=+++..+||+.+-
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA-vFaP~~~LgLIIvdEE 266 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA-VFAPVEDLGLVAIWDD 266 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-EEeccCCCCEEEEEcC
Confidence 4589999999999999999998764 568999999999999999999999999999999863 3345566677776553
No 389
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=83.97 E-value=2.2 Score=58.22 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=55.5
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC-----CccEE-eeCCCCHHHHHHHHHHHhCCCccEEEEecc
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN-----FGAEY-LSGAQDQKARLASLDSFKRGKVRILVTTDL 324 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG-----IKVar-LHGgMSqEERqeILErFRSGEIdVLVSTSA 324 (2355)
+..+.-..++.++++.++|...+..+++.|.... +.+.. +|+.|+..+++.++++|.+|+++|||+|..
T Consensus 116 ~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 116 LMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 3344444455799999999999988888887642 44333 899999999999999999999999999975
No 390
>PRK10865 protein disaggregation chaperone; Provisional
Probab=83.60 E-value=6.4 Score=53.74 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=15.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.++||.+|+|.|||.++-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 479999999999996654
No 391
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=83.54 E-value=2.4 Score=50.19 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=34.9
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcC-C-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 36 LQENGFVKESPIQMAAFPYVLNG-Y-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 36 Lqa~GF~eLRPYQeEALn~LLSG-R-NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
|..+|+ .+.|.+.|..++.. . .++|+++||+||| ..+.+++..+.. ....++.|-
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKT-T~l~all~~i~~---~~~~iitiE 115 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKT-TTLYSALSELNT---PEKNIITVE 115 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHH-HHHHHHHhhhCC---CCCeEEEEC
Confidence 445553 66688888776653 3 4889999999999 445556555431 234455543
No 392
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=83.46 E-value=3.5 Score=56.59 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=66.8
Q ss_pred CeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-cccccCCCCccEEEEe
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-AARGIDAANVDLVINL 340 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-LGEGLDLPaVDTVIIy 340 (2355)
.+++|.++|+..+...++.|... ++++..++|.++..++..+++.+..|.++|||+|.. +...+.+..+.+||+-
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEee
Confidence 68999999999999888877653 578889999999999999999999999999999964 4456788889998876
Q ss_pred cCCC
Q psy8497 341 EIPH 344 (2355)
Q Consensus 341 DSP~ 344 (2355)
..+.
T Consensus 581 Eahr 584 (926)
T TIGR00580 581 EEQR 584 (926)
T ss_pred cccc
Confidence 6553
No 393
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.24 E-value=11 Score=50.46 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=33.7
Q ss_pred ceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 162 VRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 162 IdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
--+||||++|.+.+......+..++..++....+|++|-+.+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 348999999998766566788888888888888888887744
No 394
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=83.21 E-value=0.95 Score=49.58 Aligned_cols=43 Identities=21% Similarity=0.111 Sum_probs=28.9
Q ss_pred CCCCCcEEEECHHHHHHHHHhhccc--CcCceEEEecccchhccc
Q psy8497 134 PKRPVQIVVGSPGRIKQMIKLKYLN--MDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 134 qirq~DILVTTPErLLDLLdrr~Ld--LSkIdLLIVDEAHRLkN~ 176 (2355)
....++|||++|..|++-.....+. ...-.+|||||||.|.+.
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 3444899999999987654443332 234468999999998753
No 395
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.20 E-value=6.5 Score=51.99 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=16.2
Q ss_pred CcEEEEccCCchHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAI 79 (2355)
+.+|+.||.|+|||.++.+.+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 347999999999997665433
No 396
>KOG0701|consensus
Probab=82.99 E-value=0.88 Score=64.40 Aligned_cols=94 Identities=21% Similarity=0.376 Sum_probs=78.9
Q ss_pred eEEEEEcccccHHHHHHHHHhcC-CccEEeeCCCC-----------HHHHHHHHHHHhCCCccEEEEecccccccCCCCc
Q psy8497 267 QCVIFSNYQLRPEVICENLANAN-FGAEYLSGAQD-----------QKARLASLDSFKRGKVRILVTTDLAARGIDAANV 334 (2355)
Q Consensus 267 RVLVFSQTRKmAEiLADyLrErG-IKVarLHGgMS-----------qEERqeILErFRSGEIdVLVSTSALGEGLDLPaV 334 (2355)
-.|+|+.....+..+...|.... ..+..+.|.+. ...+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 56899999999988888887753 34444665443 3346788999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhhccCCCC
Q psy8497 335 DLVINLEIPHDAATYLHRMGRAGRYG 360 (2355)
Q Consensus 335 DTVIIyDSP~SPqSYIQRIGRAGRiG 360 (2355)
+.|++++.|.....|+|..||+-+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999998753
No 397
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.88 E-value=7.5 Score=52.71 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.3
Q ss_pred CcEEEEccCCchHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVA 78 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIA 78 (2355)
.++||.+|+|.|||.++-..
T Consensus 201 ~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred CCeEEECCCCCCHHHHHHHH
Confidence 57999999999999665533
No 398
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.44 E-value=11 Score=47.87 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=81.1
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-c------ccc-CCCCccE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA-A------RGI-DAANVDL 336 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL-G------EGL-DLPaVDT 336 (2355)
...+||.++++..+......|...++.+..+++.....++..++..+..+.++||++|.-. . ..+ ....+.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 3589999999999999899999999999999999999999999999999999999999632 1 122 4566778
Q ss_pred EEEecCCC------CHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 337 VINLEIPH------DAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 337 VIIyDSP~------SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
||+-..+. .......+++...+.-....++.+....+......+...+
T Consensus 131 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l 184 (470)
T TIGR00614 131 IAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQL 184 (470)
T ss_pred EEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHc
Confidence 87655552 1223333444333222223445554444444444444443
No 399
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=82.40 E-value=8.8 Score=48.90 Aligned_cols=39 Identities=13% Similarity=0.341 Sum_probs=23.6
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
....+|||||+|.|.... ...+..++...+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 567899999999886432 234444555444444445443
No 400
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=82.29 E-value=12 Score=48.72 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=80.1
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc------cccCCCCccEEE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA------RGIDAANVDLVI 338 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG------EGLDLPaVDTVI 338 (2355)
.+.+||.++++..+....+.|...|+.+..+++.++..++..++..+..+.++||+.|.--- .-+....+.+||
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Confidence 35789999999999988899999999999999999999999999999999999999885321 123344567777
Q ss_pred EecCC----C--CHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhc
Q psy8497 339 NLEIP----H--DAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 339 IyDSP----~--SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLK 385 (2355)
+-... | ......++++.....-....++.+....+......+...+.
T Consensus 133 iDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 133 VDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred EeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 54443 2 12223344444322111223555554444444444544433
No 401
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=82.12 E-value=8.7 Score=52.36 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=15.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.+.||.+|+|.|||.+.-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999996654
No 402
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.63 E-value=11 Score=49.89 Aligned_cols=41 Identities=15% Similarity=0.342 Sum_probs=25.1
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
.....+|||||+|.|.... ...+..+++..+...-+| +.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEE-EEeC
Confidence 4678899999999986432 344555555544444444 4444
No 403
>PHA00729 NTP-binding motif containing protein
Probab=81.56 E-value=8.9 Score=45.34 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.9
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
+++|.+++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999996655
No 404
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=81.55 E-value=11 Score=51.48 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=20.6
Q ss_pred HHHHHHHHH----c--CCcEEEEccCCchHHHHHH
Q psy8497 48 QMAAFPYVL----N--GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 48 QeEALn~LL----S--GRNVILAAPTGSGKTLVAL 76 (2355)
|..-|..+. + ..++||.+|.|+|||.+.-
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 555555554 3 2579999999999995544
No 405
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=81.51 E-value=13 Score=45.33 Aligned_cols=40 Identities=3% Similarity=0.204 Sum_probs=26.7
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
..+.+||||++|.|-.. -...+.++++.-+ ...+|+++..
T Consensus 123 ~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 123 APRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 57889999999988543 3455666666655 5555555543
No 406
>PRK07413 hypothetical protein; Validated
Probab=81.06 E-value=74 Score=40.63 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=78.5
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcC--CCCCeEEEEcccHH-HH-HHHHHHHHHHhcccC-CcEEEEEECCccccCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLP--VQQPQTIILAPTRE-IA-VQITDVVRSVGAHVK-NLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr--~qggRVLILVPTRA-LA-qQ~anwLREFgk~AP-gLrVVvytGGkq~rkqi 135 (2355)
++|--..|=|||.+++-.+++.+-+.. ....+|+||-=.+. -. .--...+..+....| .+.+..+--+......
T Consensus 22 i~VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~ivQFlKg~~~~~GE~~~l~~l~~~~~~~i~~~~~g~~~~~~~~- 100 (382)
T PRK07413 22 LHVYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRFLKGPGRAYDEDAAIEALQRGFPHLIDQVRTGRAEFFGAD- 100 (382)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEEEEEcCCCCCCcHHHHHHhccccCCCceEEEECCCCCeeeCC-
Confidence 677788899999999988887766311 11238888875443 10 000122222221111 2333221111111100
Q ss_pred CCCcEEEECHHHHHHHHH--hhcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 136 RPVQIVVGSPGRIKQMIK--LKYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLd--rr~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
.... -........+. ...+.-..+++||+||+=..++.++ ...+..++...|...-+|++.-.++.++.+...
T Consensus 101 ~~~~---~~~~~a~~~~~~a~~~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~AD 177 (382)
T PRK07413 101 EITK---FDRQEAQRGWDIAKGAIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIAD 177 (382)
T ss_pred CCcH---HHHHHHHHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCC
Confidence 0000 00011111111 1333457889999999998887775 566777777777777888777777766665554
No 407
>PRK05973 replicative DNA helicase; Provisional
Probab=80.91 E-value=5.8 Score=46.93 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=34.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
+.-++|.|++|+|||+.++..+...+. .+.+++|+.---. ..|+.+.+..++
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~----~Ge~vlyfSlEes-~~~i~~R~~s~g 115 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMK----SGRTGVFFTLEYT-EQDVRDRLRALG 115 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHh----cCCeEEEEEEeCC-HHHHHHHHHHcC
Confidence 445899999999999766655554433 3667888864322 355566666663
No 408
>PRK09354 recA recombinase A; Provisional
Probab=80.72 E-value=5.1 Score=49.83 Aligned_cols=97 Identities=13% Similarity=0.237 Sum_probs=57.0
Q ss_pred HHHHHHHc-C-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEE
Q psy8497 50 AAFPYVLN-G-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVD 123 (2355)
Q Consensus 50 EALn~LLS-G-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVV 123 (2355)
..|+.++. | .-+.|.+|.|+|||..++..+..... .+..++||-.--++-. ..++.++...
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~----~G~~~~yId~E~s~~~---~~a~~lGvdl------ 112 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDP---VYAKKLGVDI------ 112 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEECCccchHH---HHHHHcCCCH------
Confidence 34566666 3 33779999999999877766655443 4678999988776643 3344442111
Q ss_pred EEECCccccCCCCCCcEEEECH---HHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 124 YFIGGTQVERPKRPVQIVVGSP---GRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 124 vytGGkq~rkqirq~DILVTTP---ErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
-++++..| +.++..+.. .+.-..+++||||=+-.|.
T Consensus 113 --------------d~lli~qp~~~Eq~l~i~~~-li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 113 --------------DNLLVSQPDTGEQALEIADT-LVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred --------------HHeEEecCCCHHHHHHHHHH-HhhcCCCCEEEEeChhhhc
Confidence 12344433 333333321 1223467899999877554
No 409
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=80.62 E-value=7.5 Score=44.09 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=38.1
Q ss_pred HHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 51 AFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 51 ALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
.++.++. +.-++|.+++|+|||..++..+...+. .+.+++|+.... -..++.+.+..++
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~----~g~~~~y~s~e~-~~~~l~~~~~~~~ 67 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK----NGEKAMYISLEE-REERILGYAKSKG 67 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECCC-CHHHHHHHHHHcC
Confidence 4555554 345888999999999765555544443 366788887543 3456666666653
No 410
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=80.55 E-value=14 Score=44.98 Aligned_cols=41 Identities=10% Similarity=0.254 Sum_probs=26.5
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
...+.++||||+|+|... -...+.++++.-+....+|++|.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 356789999999988643 23455666665555555555444
No 411
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.54 E-value=7.9 Score=47.18 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHH-cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 42 VKESPIQMAAFPYVL-NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 42 ~eLRPYQeEALn~LL-SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
..+.+.|..-+..+. .++++|++++||+||| .++.+++..+- ...+++.+=-+.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKT-t~lnall~~Ip----~~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKT-TLLNALLDFIP----PEERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHH-HHHHHHHHhCC----chhcEEEEeccccc
Confidence 467777777665555 5688999999999999 55555554432 35566666655555
No 412
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.37 E-value=3.4 Score=53.22 Aligned_cols=39 Identities=36% Similarity=0.506 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHcCCc--EEEEccCCchHHHHHHHHHHHHHH
Q psy8497 45 SPIQMAAFPYVLNGYD--AIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 45 RPYQeEALn~LLSGRN--VILAAPTGSGKTLVALIAILerL~ 84 (2355)
.+.|.+.+..++.... ++|.+||||||| +.+.+++..+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKT-TTLY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKT-TTLYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHH-HHHHHHHHHhc
Confidence 7888888888887654 777999999999 55777777766
No 413
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=80.33 E-value=10 Score=51.14 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=23.5
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
.....++||||+|.|.... ...+...++.-+....+|+++
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 3577899999999876432 234444444444344444433
No 414
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=79.96 E-value=11 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=16.8
Q ss_pred EEEEccCCchHHHHHHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ 84 (2355)
.|+.+|.|.|||.++.+ +...|.
T Consensus 41 yLf~Gp~G~GKTt~Ar~-lAk~L~ 63 (563)
T PRK06647 41 YIFSGPRGVGKTSSARA-FARCLN 63 (563)
T ss_pred EEEECCCCCCHHHHHHH-HHHhhc
Confidence 78999999999966554 444433
No 415
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=79.92 E-value=1.5 Score=52.25 Aligned_cols=81 Identities=20% Similarity=0.413 Sum_probs=55.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCc-cccC-----CCCCCcEEEECHHHHHHHHHhhcccCcCce
Q psy8497 90 QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT-QVER-----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVR 163 (2355)
Q Consensus 90 ggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGk-q~rk-----qirq~DILVTTPErLLDLLdrr~LdLSkId 163 (2355)
.+.+|||+..-.-|..+.+.++.|... +..|+-+..-. .... ....++|.|+||.+|..++..+.+.+..+.
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 566788777766667777777776311 12222222221 1110 112488999999999999999999999999
Q ss_pred EEEecccch
Q psy8497 164 LFIMDEADK 172 (2355)
Q Consensus 164 LLIVDEAHR 172 (2355)
+||||--|+
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999999875
No 416
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=79.69 E-value=6.2 Score=46.45 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=14.6
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.+++|.+|.|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999995544
No 417
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=79.61 E-value=8.4 Score=44.21 Aligned_cols=137 Identities=12% Similarity=0.067 Sum_probs=77.6
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHH-HHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQI-TDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~-anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
+.|--..|=|||.+++-.+++.+- .+.+|+||-=.+.-...- ...++. .+++.+..+ +...........
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAaG----~G~rV~iiQFlKg~~~~GE~~~l~~----~~~v~~~~~--g~~~~~~~~~~~ 93 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIAG----QGTPVLIVQFLKGGIQQGPDRPIQL----GQNLDWVRC--DLPRCLDTPHLD 93 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHhc----CCCEEEEEEEecCCCcchHHHHHHh----CCCcEEEEC--CCCCeeeCCCcC
Confidence 566788899999998888877655 588899987555431111 111222 223333221 111100000000
Q ss_pred -EEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHHHHH
Q psy8497 140 -IVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNLATL 210 (2355)
Q Consensus 140 -ILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EILElL 210 (2355)
. ........+.. ..+.-..+++||+||+=...+.++ ...+..++...|...-+|++.-.+++++.+..
T Consensus 94 ~~---~~~~~~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 94 ES---EKKALQELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred HH---HHHHHHHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 0 00111122211 233457789999999998887775 56677788887777788877777776655543
No 418
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=79.60 E-value=4.3 Score=50.53 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=24.0
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
.-+||+|++|.|||..++-.+..... ..+.+++|+.
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~---~~g~~v~~fS 230 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVAL---REGKPVLFFS 230 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHH---hCCCcEEEEE
Confidence 34899999999999555444433322 2356788887
No 419
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=79.55 E-value=4.2 Score=49.94 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=34.2
Q ss_pred HHHHHHHc-C-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHH
Q psy8497 50 AAFPYVLN-G-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAV 104 (2355)
Q Consensus 50 EALn~LLS-G-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAq 104 (2355)
.+|+.++. | .-++|.+|.|+|||..++..+..... .+.+++||-.-..+-.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~----~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDP 97 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEcccchhHH
Confidence 34566664 2 33789999999999776655554433 3677888877665544
No 420
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=79.38 E-value=9 Score=50.71 Aligned_cols=134 Identities=12% Similarity=0.112 Sum_probs=78.9
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHH-HhcccCCcEEEEEECCcccc-CCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRS-VGAHVKNLHVDYFIGGTQVE-RPK 135 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLRE-Fgk~APgLrVVvytGGkq~r-kqi 135 (2355)
++-.+..-|---|||.. +.+++..|+. ...+-++.|++.-+-.++-+.+++.. +..|.|.-.++...++.-.- ...
T Consensus 202 QkaTVFLVPRRHGKTWf-~VpiIsllL~-s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~s~pg 279 (668)
T PHA03372 202 QKATVFLVPRRHGKTWF-IIPIISFLLK-NIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISIDHRG 279 (668)
T ss_pred ccceEEEecccCCceeh-HHHHHHHHHH-hhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEEecCC
Confidence 34567788999999965 4455555552 35678899999988777665555442 44555544443332221110 001
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC-CCceEEEEEeccC
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-PMKQMLVVSATYS 203 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp-pnrQILLLSATLS 203 (2355)
...-++.+| ......+.-+.+++|+|||||-+.. ..+..|+..+. ...++|++|.|-.
T Consensus 280 ~Kst~~fas------c~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~KiIfISS~Ns 338 (668)
T PHA03372 280 AKSTALFAS------CYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTKIIFISSTNT 338 (668)
T ss_pred Ccceeeehh------hccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCceEEEEeCCCC
Confidence 111122222 2333445567889999999997653 34555666553 4678899998754
No 421
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=79.26 E-value=5.2 Score=49.32 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=35.4
Q ss_pred HHHHHHHc-C-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHH
Q psy8497 50 AAFPYVLN-G-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAV 104 (2355)
Q Consensus 50 EALn~LLS-G-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAq 104 (2355)
.+|+.++. | .-+.|.+|.|+|||..++..+..... .+..++||.+--.+-.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~----~g~~~vyId~E~~~~~ 97 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK----LGGTVAFIDAEHALDP 97 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCCEEEECccccHHH
Confidence 34566665 3 34789999999999776655554433 3678999988776654
No 422
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=79.03 E-value=7.1 Score=41.73 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=21.8
Q ss_pred HHHHHHHHHHH------cCCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy8497 46 PIQMAAFPYVL------NGYDAIVQSKSGTGKSIVFVVAALNKLIK 85 (2355)
Q Consensus 46 PYQeEALn~LL------SGRNVILAAPTGSGKTLVALIAILerL~e 85 (2355)
..|.+.+..++ ..+.++|.|+.|+|||.. +..++..+..
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~l-l~~~~~~~~~ 50 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSL-LRALLDRLAE 50 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 44555555444 134599999999999944 4456666654
No 423
>PRK10436 hypothetical protein; Provisional
Probab=79.01 E-value=3.6 Score=52.65 Aligned_cols=40 Identities=30% Similarity=0.455 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHHcCC--cEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 44 ESPIQMAAFPYVLNGY--DAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 44 LRPYQeEALn~LLSGR--NVILAAPTGSGKTLVALIAILerL~ 84 (2355)
+.+.|.+.+..++... -+||++|||+|||.. +.+++..+.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 4667888887776533 388999999999944 556666654
No 424
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=78.98 E-value=4.2 Score=51.54 Aligned_cols=27 Identities=11% Similarity=0.338 Sum_probs=19.7
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
.|+.++|.+|+|+|||.. +..+...+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL-~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL-LQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHH-HHHHHHhhc
Confidence 577899999999999954 334444444
No 425
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=78.48 E-value=6.4 Score=43.87 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=26.1
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
.-+.|.+|+|+|||...+..+..... .+.+++||.-.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~----~g~~v~yi~~e 49 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAAR----QGKKVVYIDTE 49 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECC
Confidence 34789999999999776554444333 35678888775
No 426
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=78.12 E-value=9.5 Score=48.74 Aligned_cols=99 Identities=19% Similarity=0.216 Sum_probs=56.4
Q ss_pred HHHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEE
Q psy8497 49 MAAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVD 123 (2355)
Q Consensus 49 eEALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVV 123 (2355)
...|+.++.| .-++|.+++|+|||...+.. +..+.. .+.++||+..-- -..|+......+......+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~-a~~~a~---~g~kvlYvs~EE-s~~qi~~ra~rlg~~~~~l~-- 152 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQV-ACQLAK---NQMKVLYVSGEE-SLQQIKMRAIRLGLPEPNLY-- 152 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHH-HHHHHh---cCCcEEEEECcC-CHHHHHHHHHHcCCChHHeE--
Confidence 3556777653 34889999999999655543 333332 346799988653 34555555555432111111
Q ss_pred EEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 124 YFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 124 vytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
++ . -++.+.+...+.. ...++||||.+..+.
T Consensus 153 ~~-~--------------e~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 153 VL-S--------------ETNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred Ec-C--------------CCCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 00 0 0233455444432 346799999999765
No 427
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=78.08 E-value=5.4 Score=49.47 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=20.1
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
.+..++|++|||+||| +.+.+++..+.
T Consensus 133 ~~glilI~GpTGSGKT-TtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKS-TLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHH-HHHHHHHHHHh
Confidence 3456999999999999 44556666654
No 428
>PHA00350 putative assembly protein
Probab=77.98 E-value=11 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=18.1
Q ss_pred EEEEccCCchHHHHHHH-HHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVV-AALNKLI 84 (2355)
Q Consensus 61 VILAAPTGSGKTLVALI-AILerL~ 84 (2355)
.|+.+..|+|||+.++. .++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 47899999999987775 3555554
No 429
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=77.87 E-value=5.5 Score=44.34 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHH
Q psy8497 42 VKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNK 82 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILer 82 (2355)
..+.+.|.+.+..+.. +..++|++|||+|||.. +-+++..
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl-l~aL~~~ 48 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTL-LNALLAF 48 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 3577888888887765 56799999999999944 3344433
No 430
>KOG0741|consensus
Probab=77.81 E-value=13 Score=48.66 Aligned_cols=51 Identities=16% Similarity=0.450 Sum_probs=29.8
Q ss_pred CcCceEEEecccchhcccC-----hH----HHHHHHHHhCCCC-ceEEEEEeccChhHHHH
Q psy8497 159 MDSVRLFIMDEADKLINTG-----FV----EDITWIYSQLPPM-KQMLVVSATYSHDNLAT 209 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~G-----F~----SrLeeILs~Lppn-rQILLLSATLS~EILEl 209 (2355)
.+.+.+||||++.+|+++. |. ..+.-+++..|+. .+++.+..|-....++.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~ 656 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE 656 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH
Confidence 4567799999999999864 32 2233344445554 34555555544444433
No 431
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=77.78 E-value=7.9 Score=43.48 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=30.8
Q ss_pred HHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEcccH
Q psy8497 51 AFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAPTR 100 (2355)
Q Consensus 51 ALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVPTR 100 (2355)
.++.++. +.-+.|.++.|+|||..++..+...+... ......++||....
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 4556664 23488999999999976665544433310 00126788888654
No 432
>KOG0740|consensus
Probab=77.70 E-value=9.1 Score=48.86 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=28.8
Q ss_pred cCceEEEecccchhcccC--------hHHHHHHHHH----hCCCCceEEEEEeccChhHHH
Q psy8497 160 DSVRLFIMDEADKLINTG--------FVEDITWIYS----QLPPMKQMLVVSATYSHDNLA 208 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~G--------F~SrLeeILs----~LppnrQILLLSATLS~EILE 208 (2355)
.+..+|+|||+|.++... .......++. .....-+|++++||-.+...+
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 345688999999886321 1112222222 234456899999996655443
No 433
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=77.64 E-value=3.6 Score=52.76 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHHcCCc--EEEEccCCchHHHHHHHHHHHHHH
Q psy8497 44 ESPIQMAAFPYVLNGYD--AIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 44 LRPYQeEALn~LLSGRN--VILAAPTGSGKTLVALIAILerL~ 84 (2355)
+.+-|.+.+..+..... ++|++|||+||| +.+.+++..+.
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKT-TtL~a~L~~l~ 267 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKT-TTLYAALSRLN 267 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHH-HHHHHHHhccC
Confidence 36778888888776433 689999999999 44555555543
No 434
>CHL00176 ftsH cell division protein; Validated
Probab=77.50 E-value=12 Score=49.69 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.1
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.+||.+|+|+|||+.+-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999996544
No 435
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=77.39 E-value=9.2 Score=47.67 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.1
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||+++-
T Consensus 166 ~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CceEEECCCCCChHHHHH
Confidence 469999999999996644
No 436
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=77.26 E-value=6.6 Score=48.24 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=27.6
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
.+.++||+++||+||| .++-+++..+- ...++++|=-+.+|
T Consensus 159 ~~~nili~G~tgSGKT-Tll~aL~~~ip----~~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKT-TFTNAALREIP----AIERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHH-HHHHHHHhhCC----CCCeEEEecCCCcc
Confidence 4678999999999999 44555554443 34566665444444
No 437
>PRK06904 replicative DNA helicase; Validated
Probab=77.24 E-value=10 Score=48.77 Aligned_cols=49 Identities=14% Similarity=0.092 Sum_probs=28.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
.=+||+|.+|.|||..++ -++..+.. ..+.+|+|++.- .-..|+...+.
T Consensus 222 ~LiiIaarPg~GKTafal-nia~~~a~--~~g~~Vl~fSlE-Ms~~ql~~Rll 270 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAM-NLCENAAM--ASEKPVLVFSLE-MPAEQIMMRML 270 (472)
T ss_pred cEEEEEeCCCCChHHHHH-HHHHHHHH--hcCCeEEEEecc-CCHHHHHHHHH
Confidence 338889999999995443 34333321 135678777643 33344444443
No 438
>PRK10689 transcription-repair coupling factor; Provisional
Probab=77.09 E-value=6.7 Score=55.09 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=65.7
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-cccccCCCCccEEEE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-AARGIDAANVDLVIN 339 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-LGEGLDLPaVDTVII 339 (2355)
..++||.++|+..+..++..|... ++.+..+++..+..++..+++.+..|.++|||+|.. +...+.+..+.+||+
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 468999999999999888877653 467788999999999999999999999999999964 444567778888886
Q ss_pred ecCCC
Q psy8497 340 LEIPH 344 (2355)
Q Consensus 340 yDSP~ 344 (2355)
-..+.
T Consensus 729 DEahr 733 (1147)
T PRK10689 729 DEEHR 733 (1147)
T ss_pred echhh
Confidence 55543
No 439
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.01 E-value=6.2 Score=53.52 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=36.9
Q ss_pred eEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 163 RLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 163 dLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
-++|+|.-|++.+.....-+..+++..|....+|++|-+-+
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 48999999999999888999999999999999999988644
No 440
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=76.95 E-value=7.9 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=17.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL 83 (2355)
.+.+||.+|+|+|||+++- ++...+
T Consensus 216 p~GILLyGPPGTGKT~LAK-AlA~eL 240 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAK-AVANSL 240 (512)
T ss_pred CcceEEECCCCCcHHHHHH-HHHHhh
Confidence 3579999999999996543 444333
No 441
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=76.78 E-value=3.4 Score=48.88 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=16.2
Q ss_pred HcCCcEEEEccCCchHHHH
Q psy8497 56 LNGYDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 56 LSGRNVILAAPTGSGKTLV 74 (2355)
..|+.++|.+|.|+|||..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999943
No 442
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.76 E-value=18 Score=46.77 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=15.0
Q ss_pred EEEEccCCchHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAI 79 (2355)
.|+.||.|+|||.++.+.+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999997765443
No 443
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=76.75 E-value=7.1 Score=52.15 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.9
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||+++-
T Consensus 488 ~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999996544
No 444
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=76.39 E-value=4.3 Score=51.39 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=19.9
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
.|+.++|.+|.|+|||..+ ..+...+.
T Consensus 168 kGQR~lIvgppGvGKTTLa-K~Ian~I~ 194 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL-QNIANSIT 194 (416)
T ss_pred cCceEEEeCCCCCChhHHH-HHHHHHHH
Confidence 5788999999999999543 34555544
No 445
>KOG0733|consensus
Probab=76.20 E-value=15 Score=48.66 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=29.4
Q ss_pred cCceEEEecccchhccc-------ChHHHHHHHHHhC---CCCceEEEEEeccChh
Q psy8497 160 DSVRLFIMDEADKLINT-------GFVEDITWIYSQL---PPMKQMLVVSATYSHD 205 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~-------GF~SrLeeILs~L---ppnrQILLLSATLS~E 205 (2355)
....+|+|||++.|.-. .-...+..++..+ .....|.++.||-.++
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 44568999999988631 1234455555554 3345677788886654
No 446
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=76.03 E-value=4.6 Score=52.57 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHcC-C-cEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 45 SPIQMAAFPYVLNG-Y-DAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 45 RPYQeEALn~LLSG-R-NVILAAPTGSGKTLVALIAILerL~ 84 (2355)
.+-|.+.+..++.. + -+||++|||+|||.. +.+++..+.
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 66788888777654 3 378999999999944 556666653
No 447
>KOG1807|consensus
Probab=76.00 E-value=4.2 Score=54.37 Aligned_cols=73 Identities=21% Similarity=0.126 Sum_probs=56.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 40 GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
|...|-.-|+.|+...+..+-.||++|.|+|||++.+.++-..|... .....++||+|=|...+.|....+-.
T Consensus 375 g~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 375 GLVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred CceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 34456778999999999988899999999999999887766655532 23456799999998887777665543
No 448
>PRK06620 hypothetical protein; Validated
Probab=76.00 E-value=5.8 Score=45.70 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=14.5
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..++|.+|.|+|||....
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 348999999999995543
No 449
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=75.54 E-value=3.5 Score=47.90 Aligned_cols=51 Identities=12% Similarity=0.273 Sum_probs=31.7
Q ss_pred HHHHHHHHH-cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 48 QMAAFPYVL-NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 48 QeEALn~LL-SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
..+.+..+. .+.++||+++||+||| .++.+++..+.. ...++++|-...++
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKT-T~l~all~~i~~---~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKT-TLLNALLEEIPP---EDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHH-HHHHHHHHHCHT---TTSEEEEEESSS-S
T ss_pred HHHHHhhccccceEEEEECCCccccc-hHHHHHhhhccc---cccceEEeccccce
Confidence 333444332 3567999999999999 445566655542 23667777665555
No 450
>PF12846 AAA_10: AAA-like domain
Probab=75.36 E-value=4 Score=46.52 Aligned_cols=40 Identities=25% Similarity=0.552 Sum_probs=28.5
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
.+++|.|+||+|||.... .++..+. ..+..++|+=|....
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~---~~g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLI---RRGPRVVIFDPKGDY 41 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHH---HcCCCEEEEcCCchH
Confidence 578999999999996655 5554444 245677777676555
No 451
>KOG0742|consensus
Probab=75.03 E-value=4.1 Score=51.47 Aligned_cols=17 Identities=24% Similarity=0.426 Sum_probs=14.6
Q ss_pred CcEEEEccCCchHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVA 75 (2355)
+|+++.+|.|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 57999999999999553
No 452
>KOG0991|consensus
Probab=74.97 E-value=6.6 Score=47.09 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=17.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ 84 (2355)
++|+.+|.|.|||.+.. ++...|.
T Consensus 50 ~liisGpPG~GKTTsi~-~LAr~LL 73 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSIL-CLARELL 73 (333)
T ss_pred ceEeeCCCCCchhhHHH-HHHHHHh
Confidence 59999999999996654 4444443
No 453
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=74.78 E-value=6.2 Score=51.58 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=55.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
.|++-|.+++... ...++|.+.-|+|||.+...-+...+.........+|.|+=|.-.|.++.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5889999999876 5568999999999998877666655554334455688888888888888988888753
No 454
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=74.65 E-value=7.8 Score=48.36 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=28.7
Q ss_pred HHHHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 49 MAAFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 49 eEALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
...|+.++.| .-+||+|++|.|||..++-.+..... ..+.+++|+..
T Consensus 182 ~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~---~~g~~vl~~Sl 232 (434)
T TIGR00665 182 FTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAI---KEGKPVAFFSL 232 (434)
T ss_pred chhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHH---hCCCeEEEEeC
Confidence 3445555543 33789999999999555444443333 23566888764
No 455
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=74.34 E-value=9.5 Score=48.87 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.4
Q ss_pred HHHHcCCcEEEEccCCchHHHHHHH
Q psy8497 53 PYVLNGYDAIVQSKSGTGKSIVFVV 77 (2355)
Q Consensus 53 n~LLSGRNVILAAPTGSGKTLVALI 77 (2355)
+++-++.|+|+.+|+|+|||.++..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 6777889999999999999976663
No 456
>KOG0745|consensus
Probab=74.16 E-value=4.2 Score=51.81 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=16.5
Q ss_pred CCcEEEEccCCchHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVV 77 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALI 77 (2355)
..|+||.+|||+|||+.+..
T Consensus 226 KSNvLllGPtGsGKTllaqT 245 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQT 245 (564)
T ss_pred cccEEEECCCCCchhHHHHH
Confidence 34799999999999987653
No 457
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=74.05 E-value=13 Score=47.77 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=42.1
Q ss_pred HHHHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 48 QMAAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 48 QeEALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
-...+..++.| .-++|.+|+|+|||+..+..+...+. .+.++||++- -+-..|+...+..++
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~----~ge~~~y~s~-eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA----NKERAILFAY-EESRAQLLRNAYSWG 314 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEEe-eCCHHHHHHHHHHcC
Confidence 34567777754 34899999999999766655544433 4667888873 344566677777664
No 458
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=74.04 E-value=15 Score=47.76 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=53.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
+++-|...- ..+-..|.++.-..-.|.. .|.+-.|+|||++...-+. ..+..++..+++|.+-|+.|+.++...+.
T Consensus 152 ~l~~ieskI-anfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa--~lh~knPd~~I~~Tfftk~L~s~~r~lv~ 227 (660)
T COG3972 152 LLDTIESKI-ANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA--ELHSKNPDSRIAFTFFTKILASTMRTLVP 227 (660)
T ss_pred HHHHHHHHH-hcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH--HHhcCCCCceEEEEeehHHHHHHHHHHHH
Confidence 666555432 2455567765433333433 6788899999966443332 23345678899999999999999999988
Q ss_pred HHh
Q psy8497 112 SVG 114 (2355)
Q Consensus 112 EFg 114 (2355)
+|+
T Consensus 228 ~F~ 230 (660)
T COG3972 228 EFF 230 (660)
T ss_pred HHH
Confidence 875
No 459
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=74.03 E-value=9.8 Score=46.03 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=29.3
Q ss_pred cCC-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHHHHHHHHHHHHH
Q psy8497 57 NGY-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREIAVQITDVVRSV 113 (2355)
Q Consensus 57 SGR-NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRALAqQ~anwLREF 113 (2355)
.++ -+.|+++.|+|||++.= +++..+. ....++|+. |+-..+.=...|+..+
T Consensus 49 d~qg~~~vtGevGsGKTv~~R-al~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRR-ALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred cCCceEEEEecCCCchhHHHH-HHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHh
Confidence 344 48889999999997655 5554443 233334444 4444433334444444
No 460
>KOG1132|consensus
Probab=73.97 E-value=38 Score=46.64 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC-------CccEEeeCCCCHHHHHHHHHHHhC--------CCccE
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN-------FGAEYLSGAQDQKARLASLDSFKR--------GKVRI 318 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG-------IKVarLHGgMSqEERqeILErFRS--------GEIdV 318 (2355)
+.|+......+ ..+|||.++-.+++.+..+....+ .+-.++ .--+..+-.+++..|-+ |.+.+
T Consensus 551 ~~i~~v~rvVp-~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~ 628 (945)
T KOG1132|consen 551 EAILNVARVVP-YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFF 628 (945)
T ss_pred HHHHHHHhhcc-cceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEE
Confidence 44455444444 459999999999999877766532 222222 11133444455555653 22344
Q ss_pred EEEecccccccCCCC--ccEEEEecCCC
Q psy8497 319 LVTTDLAARGIDAAN--VDLVINLEIPH 344 (2355)
Q Consensus 319 LVSTSALGEGLDLPa--VDTVIIyDSP~ 344 (2355)
.||=-...+|||+.+ .+.||+...|+
T Consensus 629 aVcRGKVSEGlDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 629 AVCRGKVSEGLDFSDDNGRAVIITGLPY 656 (945)
T ss_pred EEecccccCCCCccccCCceeEEecCCC
Confidence 566677899999976 57799999886
No 461
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=73.94 E-value=7 Score=48.90 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=24.0
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
...+||++|||+||| ..+.+++..+... ....+++.|
T Consensus 149 ~GlilI~G~TGSGKT-T~l~al~~~i~~~-~~~~~Ivti 185 (372)
T TIGR02525 149 AGLGLICGETGSGKS-TLAASIYQHCGET-YPDRKIVTY 185 (372)
T ss_pred CCEEEEECCCCCCHH-HHHHHHHHHHHhc-CCCceEEEE
Confidence 445899999999999 5556676666531 123345554
No 462
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=73.74 E-value=19 Score=48.36 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.1
Q ss_pred CCcEEEEccCCchHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVA 75 (2355)
.+.++|.+|+|+|||..+
T Consensus 212 ~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CceEEEECCCCCChHHHH
Confidence 467999999999999553
No 463
>PRK13531 regulatory ATPase RavA; Provisional
Probab=73.58 E-value=9.1 Score=49.67 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=20.8
Q ss_pred HHHHHHcCCcEEEEccCCchHHHHHH
Q psy8497 51 AFPYVLNGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 51 ALn~LLSGRNVILAAPTGSGKTLVAL 76 (2355)
++-.++.+.+++|.+|+|+|||.++-
T Consensus 32 ll~aalag~hVLL~GpPGTGKT~LAr 57 (498)
T PRK13531 32 CLLAALSGESVFLLGPPGIAKSLIAR 57 (498)
T ss_pred HHHHHccCCCEEEECCCChhHHHHHH
Confidence 34455678999999999999997654
No 464
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=73.52 E-value=7.2 Score=48.65 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=43.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCC-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 39 NGFVKESPIQMAAFPYVLNGY-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGR-NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
..|..+.+-|...|..+...+ ++||++.||+|||.. +-+++.. -....++|.+=-+.+|
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~----i~~~eRvItiEDtaEL 212 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGF----IDSDERVITIEDTAEL 212 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhc----CCCcccEEEEeehhhh
Confidence 456688999999998888765 999999999999933 3233322 2334488888888877
No 465
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=73.09 E-value=11 Score=50.74 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=71.2
Q ss_pred CeEEEEEcccccHHHHHHHHHhc-CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC--
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI-- 342 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr-GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS-- 342 (2355)
..+||.++.+.....+.+.|..+ |.++..+|++++..+|.........|+.+|+|+|+.+ .=+=+++.-+||+..-
T Consensus 246 kqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA-lF~Pf~~LGLIIvDEEHD 324 (730)
T COG1198 246 KQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA-LFLPFKNLGLIIVDEEHD 324 (730)
T ss_pred CEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-hcCchhhccEEEEecccc
Confidence 68999999999998888888765 7899999999999999999999999999999999753 2334555666664321
Q ss_pred --------C-CCHhHHHHHhhccCC
Q psy8497 343 --------P-HDAATYLHRMGRAGR 358 (2355)
Q Consensus 343 --------P-~SPqSYIQRIGRAGR 358 (2355)
| ++..+.....++-.+
T Consensus 325 ~sYKq~~~prYhARdvA~~Ra~~~~ 349 (730)
T COG1198 325 SSYKQEDGPRYHARDVAVLRAKKEN 349 (730)
T ss_pred ccccCCcCCCcCHHHHHHHHHHHhC
Confidence 1 256666666665554
No 466
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=72.94 E-value=6.9 Score=47.17 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=15.1
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..++|.+|.|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999996654
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=72.57 E-value=6.4 Score=48.72 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=29.0
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
.+.+++|+++||+||| .++-+++..+. ...+++.|=...+|
T Consensus 161 ~~~nilI~G~tGSGKT-Tll~aLl~~i~----~~~rivtiEd~~El 201 (344)
T PRK13851 161 GRLTMLLCGPTGSGKT-TMSKTLISAIP----PQERLITIEDTLEL 201 (344)
T ss_pred cCCeEEEECCCCccHH-HHHHHHHcccC----CCCCEEEECCCccc
Confidence 4678999999999999 44545554432 34567777777766
No 468
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=72.53 E-value=16 Score=41.03 Aligned_cols=42 Identities=12% Similarity=0.318 Sum_probs=28.6
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCC-ceEEEEEec
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPM-KQMLVVSAT 201 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~Lppn-rQILLLSAT 201 (2355)
...+++|+||...-++......+..++..+... .++|++|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 456899999999877766666666666555333 566666554
No 469
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=72.39 E-value=9.6 Score=50.78 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=66.4
Q ss_pred CeEEEEEcccccHH----HHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-ccccCCCCccEEEEe
Q psy8497 266 NQCVIFSNYQLRPE----VICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA-ARGIDAANVDLVINL 340 (2355)
Q Consensus 266 gRVLVFSQTRKmAE----iLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL-GEGLDLPaVDTVIIy 340 (2355)
.++.+.++|--.|+ .+.++|...|+.+..+.|.+....|.++++...+|+++++|.|-++ ...+++.+.-+||+-
T Consensus 312 ~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiD 391 (677)
T COG1200 312 YQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIID 391 (677)
T ss_pred CeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEe
Confidence 48888999876554 4556666679999999999999999999999999999999999765 578999999999976
Q ss_pred cCC
Q psy8497 341 EIP 343 (2355)
Q Consensus 341 DSP 343 (2355)
...
T Consensus 392 EQH 394 (677)
T COG1200 392 EQH 394 (677)
T ss_pred ccc
Confidence 655
No 470
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=72.09 E-value=29 Score=45.08 Aligned_cols=107 Identities=19% Similarity=0.242 Sum_probs=71.3
Q ss_pred EEEEEcccccHHHHHHHHHhc-----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec-----ccccc-cCCCCccE
Q psy8497 268 CVIFSNYQLRPEVICENLANA-----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD-----LAARG-IDAANVDL 336 (2355)
Q Consensus 268 VLVFSQTRKmAEiLADyLrEr-----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS-----ALGEG-LDLPaVDT 336 (2355)
+||+++|++.+..+++.+... ++.+..+.|+++...+...++ .| .+|||+|+ .+..+ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999998888877653 567899999998777665554 46 99999996 35555 89999999
Q ss_pred EEEecCCC----CHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHH
Q psy8497 337 VINLEIPH----DAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 337 VIIyDSP~----SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLr 381 (2355)
+|+-..+. .....+..|-..... .-..++|...-.. .+..+.
T Consensus 178 lVlDEADrmLd~Gf~~~i~~I~~~~p~--~~qtllfSAT~~~-~i~~l~ 223 (513)
T COG0513 178 LVLDEADRMLDMGFIDDIEKILKALPP--DRQTLLFSATMPD-DIRELA 223 (513)
T ss_pred EEeccHhhhhcCCCHHHHHHHHHhCCc--ccEEEEEecCCCH-HHHHHH
Confidence 98655443 344444444443332 3344555433333 344443
No 471
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=72.00 E-value=16 Score=46.56 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=27.3
Q ss_pred CceEEEecccchhcccCh-------HHHHHHHHHhC---CCCceEEEEEeccChhH
Q psy8497 161 SVRLFIMDEADKLINTGF-------VEDITWIYSQL---PPMKQMLVVSATYSHDN 206 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF-------~SrLeeILs~L---ppnrQILLLSATLS~EI 206 (2355)
...+|+|||++.+....- ...+..++..+ .....++.+.||-.++.
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 345899999998874321 23444444444 34455666777755443
No 472
>KOG0730|consensus
Probab=71.82 E-value=14 Score=49.13 Aligned_cols=140 Identities=15% Similarity=0.189 Sum_probs=75.9
Q ss_pred ccccCcccCC-cHHHHHHHHH---CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEE
Q psy8497 19 DVLFENDVLI-EKPIRQGLQE---NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTI 94 (2355)
Q Consensus 19 DkV~SFEeLl-LkpLLK~Lqa---~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVL 94 (2355)
.+..+|+..+ +.++.+.|++ +.+..+-.|..-++ -.-+.+|+-+|.|+|||+++-..+-. .+.. +
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lAkalAne-------~~~n-F 496 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLAKALANE-------AGMN-F 496 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHHHHHhhh-------hcCC-e
Confidence 3456788887 4446666653 44444444444332 12367999999999999775432211 1222 3
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHH-HHHHHHhhcccCcCceEEEecccchh
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGR-IKQMIKLKYLNMDSVRLFIMDEADKL 173 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPEr-LLDLLdrr~LdLSkIdLLIVDEAHRL 173 (2355)
+-++--+|. .+| +| --|+ +.+.+.+.. ... ..+|.+||++.+
T Consensus 497 lsvkgpEL~-------sk~------------vG----------------eSEr~ir~iF~kAR-~~a-P~IiFfDEiDsi 539 (693)
T KOG0730|consen 497 LSVKGPELF-------SKY------------VG----------------ESERAIREVFRKAR-QVA-PCIIFFDEIDAL 539 (693)
T ss_pred eeccCHHHH-------HHh------------cC----------------chHHHHHHHHHHHh-hcC-CeEEehhhHHhH
Confidence 334444551 111 12 2222 333343322 122 268999999987
Q ss_pred cccC-------hHHHHHHHHHhCC---CCceEEEEEeccChhH
Q psy8497 174 INTG-------FVEDITWIYSQLP---PMKQMLVVSATYSHDN 206 (2355)
Q Consensus 174 kN~G-------F~SrLeeILs~Lp---pnrQILLLSATLS~EI 206 (2355)
.... -...+..+++.+. ....|+.+-||-.+..
T Consensus 540 ~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 540 AGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred hhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 5321 2344555555553 3457888889976543
No 473
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=71.65 E-value=10 Score=48.80 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=23.6
Q ss_pred HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEE
Q psy8497 55 VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTII 95 (2355)
Q Consensus 55 LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLI 95 (2355)
+..|.-+-|++|+|+|||... -++..+.+ ...+.++|
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~--~LL~r~~~--~~~G~I~i 388 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLI--KLLLRLYD--PTSGEILI 388 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhccCC--CCCCeEEE
Confidence 345667889999999998432 33444443 34566666
No 474
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=71.29 E-value=5.6 Score=44.88 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=22.2
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
++|++|||+|||.. +.+++..+.. .....++++--
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~--~~~~~i~t~e~ 38 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINK--NKTHHILTIED 38 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhh--cCCcEEEEEcC
Confidence 68999999999954 4455555542 22345555543
No 475
>PRK12608 transcription termination factor Rho; Provisional
Probab=70.86 E-value=4.3 Score=50.98 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=27.6
Q ss_pred HHHHHHHHHHH---cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 46 PIQMAAFPYVL---NGYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 46 PYQeEALn~LL---SGRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
++-.++|+.+. +|+.++|.+|.|+|||.+ +..++..+.
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL-l~~la~~i~ 158 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL-LQQIAAAVA 158 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 45566777776 578899999999999955 434555554
No 476
>PHA00012 I assembly protein
Probab=70.60 E-value=32 Score=43.28 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEccCCchHHHHHHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ 84 (2355)
-+|.+-.|+|||+.++.-|+..|.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 478999999999988877777666
No 477
>PRK14701 reverse gyrase; Provisional
Probab=70.34 E-value=10 Score=54.99 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=53.0
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc------CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA------NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr------GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA 324 (2355)
..++||.++++..+..+.+.|... ++.+..+||+++..++..+++.+.+|..+|||+|..
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 458999999999999988888763 467788999999999999999999999999999964
No 478
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=70.03 E-value=16 Score=46.80 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.1
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+++||.+|+|+|||..+-
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 569999999999996543
No 479
>PRK05748 replicative DNA helicase; Provisional
Probab=69.97 E-value=11 Score=47.51 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=27.6
Q ss_pred HHHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 50 AAFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 50 EALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
..|+.+..| .-+||+|.+|.|||..++-.+..... ..+.+++|+..
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~---~~g~~v~~fSl 240 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVAT---KTDKNVAIFSL 240 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHH---hCCCeEEEEeC
Confidence 344555443 34889999999999555544333322 23556777753
No 480
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=69.96 E-value=4 Score=50.62 Aligned_cols=58 Identities=21% Similarity=0.171 Sum_probs=43.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.-+...++-|..=+..+....=++-.+|-|+|||..+...+...|.. ..-.++|..=|
T Consensus 124 ~~I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~--~~v~rIiLtRP 181 (348)
T COG1702 124 KSIIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA--GQVRRIILTRP 181 (348)
T ss_pred CceEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh--cccceeeecCc
Confidence 33567788999988887776667778999999999999888888774 23344555556
No 481
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=69.73 E-value=11 Score=52.63 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=64.7
Q ss_pred CeEEEEEcccccHHHHHHHHHh----cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCccEEEEe
Q psy8497 266 NQCVIFSNYQLRPEVICENLAN----ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT-DLAARGIDAANVDLVINL 340 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrE----rGIKVarLHGgMSqEERqeILErFRSGEIdVLVST-SALGEGLDLPaVDTVIIy 340 (2355)
.+|.|.++|.-.++.=.+-|++ ..+++..+.--.+..|...+++.+.+|.++|||+| ..+..+|-+.+.-+||+-
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIID 723 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIID 723 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEe
Confidence 6899999999888765555555 46788999999999999999999999999999999 778888999888888853
No 482
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=69.72 E-value=9 Score=46.92 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=26.0
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
+..++|++|||+||| +.+.+++..+.. ....+++.+--..++
T Consensus 122 ~g~ili~G~tGSGKT-T~l~al~~~i~~--~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKS-TTLASMIDYINK--NAAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHH-HHHHHHHHhhCc--CCCCEEEEEcCChhh
Confidence 456899999999999 445555555432 224556665543333
No 483
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=69.41 E-value=28 Score=42.03 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=19.4
Q ss_pred HHHHHHcC---CcEEEEccCCchHHHHHHHHHH
Q psy8497 51 AFPYVLNG---YDAIVQSKSGTGKSIVFVVAAL 80 (2355)
Q Consensus 51 ALn~LLSG---RNVILAAPTGSGKTLVALIAIL 80 (2355)
.+..+.+. .+++|.+|+|+||| +++-.+.
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKt-tl~~~l~ 132 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKT-TLLRDLA 132 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHH-HHHHHHh
Confidence 34555543 57899999999999 3333333
No 484
>PRK08506 replicative DNA helicase; Provisional
Probab=69.40 E-value=8.9 Score=49.07 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=32.8
Q ss_pred HHHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 50 AAFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 50 EALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLR 111 (2355)
..|+.+..| .-+||+|.+|.|||..++-.+... . ..+.+++|+..- .-..|+..++.
T Consensus 180 ~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~-~---~~g~~V~~fSlE-Ms~~ql~~Rll 240 (472)
T PRK08506 180 VELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKA-L---NQDKGVAFFSLE-MPAEQLMLRML 240 (472)
T ss_pred HHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHH-H---hcCCcEEEEeCc-CCHHHHHHHHH
Confidence 344555443 338889999999996555444443 3 235677777643 23344444443
No 485
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=69.30 E-value=8.5 Score=45.31 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCcEEEEccCCchHHHHHHH
Q psy8497 49 MAAFPYVLNGYDAIVQSKSGTGKSIVFVV 77 (2355)
Q Consensus 49 eEALn~LLSGRNVILAAPTGSGKTLVALI 77 (2355)
.+++.++..+.+++|.+|+|+|||.++..
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 34455566788999999999999977653
No 486
>KOG0734|consensus
Probab=69.13 E-value=15 Score=48.15 Aligned_cols=59 Identities=12% Similarity=0.254 Sum_probs=34.7
Q ss_pred HHHHHHhhcccCcCceEEEecccchhcccC------h-HHHHHHHHHh---CCCCceEEEEEeccChhHHH
Q psy8497 148 IKQMIKLKYLNMDSVRLFIMDEADKLINTG------F-VEDITWIYSQ---LPPMKQMLVVSATYSHDNLA 208 (2355)
Q Consensus 148 LLDLLdrr~LdLSkIdLLIVDEAHRLkN~G------F-~SrLeeILs~---LppnrQILLLSATLS~EILE 208 (2355)
+.+++.... .....+|.|||++.+.... + ..-+..++.. +.++.-||++.||--++.+.
T Consensus 385 VRdLF~aAk--~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 385 VRDLFAAAK--ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred HHHHHHHHH--hcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 555554332 3345689999999875321 1 1223333333 45667899999997665443
No 487
>KOG2543|consensus
Probab=68.95 E-value=26 Score=44.70 Aligned_cols=140 Identities=18% Similarity=0.223 Sum_probs=75.7
Q ss_pred CCcHHHHHHHHHHHcCCc------EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcc
Q psy8497 43 KESPIQMAAFPYVLNGYD------AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRN------VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~ 116 (2355)
.-+..|...+..++...+ ++|.|.+|+|||.+.- .++..+ +...++|.+.- +. -+.-.+..+...
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r-~~l~~~------n~~~vw~n~~e-cf-t~~~lle~IL~~ 79 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVR-QLLRKL------NLENVWLNCVE-CF-TYAILLEKILNK 79 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHH-HHHhhc------CCcceeeehHH-hc-cHHHHHHHHHHH
Confidence 357889999999998765 4899999999995422 333222 34567776631 11 112222222211
Q ss_pred cCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHH---h--hcccCcCceEEEecccchhcccC--hHHHHHHHHHhC
Q psy8497 117 VKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIK---L--KYLNMDSVRLFIMDEADKLINTG--FVEDITWIYSQL 189 (2355)
Q Consensus 117 APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLd---r--r~LdLSkIdLLIVDEAHRLkN~G--F~SrLeeILs~L 189 (2355)
.. ..+. . ..-+=.+-+.+.+.+. + ..-....--+||+|-++.+-+.+ ....+..+.+.+
T Consensus 80 ~~-------~~d~----d---g~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~ 145 (438)
T KOG2543|consen 80 SQ-------LADK----D---GDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL 145 (438)
T ss_pred hc-------cCCC----c---hhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHh
Confidence 10 0000 0 0001111233332222 1 11111234589999999988765 355556666666
Q ss_pred CCCceEEEEEeccChh
Q psy8497 190 PPMKQMLVVSATYSHD 205 (2355)
Q Consensus 190 ppnrQILLLSATLS~E 205 (2355)
+...-+|++++++...
T Consensus 146 ~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 146 NEPTIVIILSAPSCEK 161 (438)
T ss_pred CCCceEEEEeccccHH
Confidence 6666678889987743
No 488
>PRK08760 replicative DNA helicase; Provisional
Probab=68.79 E-value=15 Score=47.38 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=32.4
Q ss_pred HHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 51 AFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 51 ALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
.|..+..| .=+||+|.+|.|||..++-.+..... ..+.+|+|+..-- -..|+...+...
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~---~~g~~V~~fSlEM-s~~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAI---KSKKGVAVFSMEM-SASQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHH---hcCCceEEEeccC-CHHHHHHHHHHh
Confidence 34455443 23788999999999555544433322 1245677775432 223444444433
No 489
>KOG2004|consensus
Probab=68.09 E-value=22 Score=48.08 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=59.0
Q ss_pred CcHHHHHHHHHHH--------cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 44 ESPIQMAAFPYVL--------NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 44 LRPYQeEALn~LL--------SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
+-.+-.+++.+|. +|+=+.+.+|+|.|||-++= +|...|. ++|+.
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~k-SIA~ALn--------------------------RkFfR 468 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAK-SIARALN--------------------------RKFFR 468 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHH-HHHHHhC--------------------------CceEE
Confidence 4555666666654 12335668999999995543 3333322 12221
Q ss_pred ccCCcEEEEEECCccccCCCCC-CcEEE-ECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC
Q psy8497 116 HVKNLHVDYFIGGTQVERPKRP-VQIVV-GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189 (2355)
Q Consensus 116 ~APgLrVVvytGGkq~rkqirq-~DILV-TTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L 189 (2355)
...|+..+...++. -+-+| +-|.++.+.++.-...-. +|.|||++.+.....+.--..+++.|
T Consensus 469 --------fSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP---liLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 469 --------FSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP---LILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred --------EeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc---eEEeehhhhhCCCCCCChHHHHHHhc
Confidence 12233333333332 22333 458899999876443333 89999999987432333344444444
No 490
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=68.07 E-value=32 Score=46.76 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=14.7
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..+++.+|+|+|||..+-
T Consensus 348 ~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGK 365 (775)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999996544
No 491
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=68.04 E-value=81 Score=34.84 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----c-ccccCCCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----A-ARGIDAAN 333 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----L-GEGLDLPa 333 (2355)
...++||.+++...+..+...+... ++.+..++|+.+..+....+. +...|+|+|.. + ..-+++..
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4458999999999888776666543 677888999888766544332 56789999942 2 22256778
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+++||+-+..
T Consensus 144 l~~lIvDE~h 153 (203)
T cd00268 144 VKYLVLDEAD 153 (203)
T ss_pred CCEEEEeChH
Confidence 8888865554
No 492
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=67.85 E-value=34 Score=43.34 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=15.7
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.++|.+|.|+|||+.+-
T Consensus 179 pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999996543
No 493
>PRK08840 replicative DNA helicase; Provisional
Probab=67.81 E-value=17 Score=46.75 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=23.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
.=+||+|.+|.|||..++-.+..... ..+.+++|+..-
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~---~~~~~v~~fSlE 255 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAM---DQDKPVLIFSLE 255 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH---hCCCeEEEEecc
Confidence 34888999999999554433333222 235677777643
No 494
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=67.68 E-value=41 Score=40.54 Aligned_cols=40 Identities=8% Similarity=0.164 Sum_probs=24.9
Q ss_pred CcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 159 MDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 159 LSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
.....++|||++|.|.... ...+...++.-|....+|+++
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 3578899999999875432 344555555544444455444
No 495
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=67.56 E-value=43 Score=44.24 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=62.0
Q ss_pred CeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccccCCCCccEEEE
Q psy8497 266 NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA------ARGIDAANVDLVIN 339 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL------GEGLDLPaVDTVII 339 (2355)
+.+||.++++..+....+.|...|+.+..+++.++..++..++..+..+.+++|++|..- ...+....+.+||+
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVI 145 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAV 145 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEE
Confidence 579999999999999999999999999999999999999999999999999999988431 12223334566665
Q ss_pred ecCC
Q psy8497 340 LEIP 343 (2355)
Q Consensus 340 yDSP 343 (2355)
-..+
T Consensus 146 DEaH 149 (607)
T PRK11057 146 DEAH 149 (607)
T ss_pred eCcc
Confidence 4433
No 496
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=66.86 E-value=11 Score=42.67 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEccc
Q psy8497 51 AFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAPT 99 (2355)
Q Consensus 51 ALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVPT 99 (2355)
.|+.++.| .-+.|.++.|+|||..++..++..+... ......+|||...
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCC
Confidence 45566653 3478999999999976655444322210 0113578888753
No 497
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=66.62 E-value=17 Score=46.42 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=29.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
|+.+||-+..|+||| ++.+-++..|.. ...++||.+..
T Consensus 10 G~TLLIKG~PGTGKT-tfaLelL~~l~~----~~~v~YISTRV 47 (484)
T PF07088_consen 10 GQTLLIKGEPGTGKT-TFALELLNSLKD----HGNVMYISTRV 47 (484)
T ss_pred CcEEEEecCCCCCce-eeehhhHHHHhc----cCCeEEEEecc
Confidence 567999999999999 555577777663 55688998864
No 498
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.59 E-value=10 Score=46.88 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHh
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIK 85 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~e 85 (2355)
++|.+||||||| +.+.+++.++.+
T Consensus 128 ILVTGpTGSGKS-TTlAamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKS-TTLAAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHH-HHHHHHHHHHhc
Confidence 788999999999 557788888774
No 499
>PRK07004 replicative DNA helicase; Provisional
Probab=66.49 E-value=9.4 Score=48.76 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=22.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
.-+||+|.+|.|||..++ -+...+.. ..+.+++|+.
T Consensus 214 ~liviaarpg~GKT~~al-~ia~~~a~--~~~~~v~~fS 249 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSM-NIGEYVAV--EYGLPVAVFS 249 (460)
T ss_pred ceEEEEeCCCCCccHHHH-HHHHHHHH--HcCCeEEEEe
Confidence 338899999999995544 33333221 2356677775
No 500
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=66.39 E-value=27 Score=42.92 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=14.9
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||..+-
T Consensus 157 ~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 459999999999996544
Done!