Query psy8497
Match_columns 2355
No_of_seqs 381 out of 2875
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 20:26:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 4.3E-49 1.5E-53 460.0 39.4 355 18-382 52-418 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 2.3E-49 7.7E-54 449.3 35.8 366 18-392 33-403 (410)
3 3pey_A ATP-dependent RNA helic 100.0 7.1E-48 2.4E-52 429.0 43.8 356 21-385 4-370 (395)
4 3fht_A ATP-dependent RNA helic 100.0 7.3E-48 2.5E-52 433.3 43.0 367 14-388 17-396 (412)
5 1s2m_A Putative ATP-dependent 100.0 7.7E-48 2.6E-52 434.5 42.2 366 19-395 18-388 (400)
6 3eiq_A Eukaryotic initiation f 100.0 9.1E-49 3.1E-53 441.9 32.4 364 19-391 37-406 (414)
7 2i4i_A ATP-dependent RNA helic 100.0 3.6E-48 1.2E-52 438.5 36.7 359 18-385 11-396 (417)
8 1xti_A Probable ATP-dependent 100.0 1.2E-47 4.1E-52 429.8 39.8 359 22-389 8-375 (391)
9 1hv8_A Putative ATP-dependent 100.0 6.3E-47 2.2E-51 417.5 37.5 353 21-389 5-362 (367)
10 1fuu_A Yeast initiation factor 100.0 7.4E-49 2.5E-53 438.9 18.8 361 19-388 18-382 (394)
11 3fmp_B ATP-dependent RNA helic 100.0 4.8E-47 1.6E-51 443.5 21.6 359 19-385 89-460 (479)
12 2z0m_A 337AA long hypothetical 100.0 3.1E-45 1.1E-49 400.6 33.5 328 31-384 4-334 (337)
13 3i5x_A ATP-dependent RNA helic 100.0 4.6E-45 1.6E-49 434.0 33.7 357 29-388 79-465 (563)
14 3sqw_A ATP-dependent RNA helic 100.0 5.6E-45 1.9E-49 438.7 33.4 365 21-388 16-414 (579)
15 3fho_A ATP-dependent RNA helic 100.0 7.1E-44 2.4E-48 424.8 23.3 360 20-388 117-487 (508)
16 1wp9_A ATP-dependent RNA helic 100.0 8.5E-42 2.9E-46 383.9 30.1 330 43-378 9-481 (494)
17 2v1x_A ATP-dependent DNA helic 100.0 7.8E-41 2.7E-45 408.9 35.7 344 19-381 18-383 (591)
18 1oyw_A RECQ helicase, ATP-depe 100.0 4.6E-41 1.6E-45 404.2 31.2 335 22-382 2-353 (523)
19 4a2p_A RIG-I, retinoic acid in 100.0 4.2E-41 1.4E-45 393.3 26.9 335 40-377 4-513 (556)
20 3tbk_A RIG-I helicase domain; 100.0 7.7E-41 2.6E-45 389.3 26.6 335 43-380 4-515 (555)
21 3oiy_A Reverse gyrase helicase 100.0 8.3E-41 2.9E-45 382.9 25.4 321 32-385 10-376 (414)
22 2ykg_A Probable ATP-dependent 100.0 1.2E-39 4E-44 396.2 28.6 345 33-380 3-524 (696)
23 3l9o_A ATP-dependent RNA helic 100.0 5.5E-39 1.9E-43 416.0 33.1 405 23-441 163-667 (1108)
24 2va8_A SSO2462, SKI2-type heli 100.0 1.6E-38 5.5E-43 390.8 33.8 339 21-373 7-409 (715)
25 2p6r_A Afuhel308 helicase; pro 100.0 8.5E-39 2.9E-43 393.5 28.4 337 23-373 2-389 (702)
26 2zj8_A DNA helicase, putative 100.0 1E-38 3.4E-43 393.9 28.8 338 22-374 1-389 (720)
27 4a2q_A RIG-I, retinoic acid in 100.0 1.2E-38 4.1E-43 398.1 28.3 338 37-377 242-754 (797)
28 2xgj_A ATP-dependent RNA helic 100.0 1.2E-37 4.2E-42 400.4 37.9 331 36-381 80-509 (1010)
29 4gl2_A Interferon-induced heli 100.0 6.3E-39 2.2E-43 390.0 19.6 327 43-373 7-520 (699)
30 4a2w_A RIG-I, retinoic acid in 100.0 1.9E-37 6.7E-42 395.2 29.8 341 34-377 239-754 (936)
31 4a4z_A Antiviral helicase SKI2 100.0 2E-36 6.7E-41 388.9 33.1 329 39-382 36-504 (997)
32 1z63_A Helicase of the SNF2/RA 100.0 1.6E-36 5.4E-41 356.2 26.8 321 43-376 37-457 (500)
33 2oca_A DAR protein, ATP-depend 100.0 1E-36 3.4E-41 358.7 21.4 310 42-363 112-446 (510)
34 2fwr_A DNA repair protein RAD2 100.0 2.4E-36 8.2E-41 352.2 21.1 304 43-377 93-459 (472)
35 3mwy_W Chromo domain-containin 100.0 6.3E-36 2.1E-40 375.2 23.0 325 42-376 235-688 (800)
36 4f92_B U5 small nuclear ribonu 100.0 3.9E-35 1.3E-39 392.6 31.1 344 32-382 915-1318(1724)
37 4f92_B U5 small nuclear ribonu 100.0 5.3E-35 1.8E-39 391.3 32.1 336 40-382 76-483 (1724)
38 4ddu_A Reverse gyrase; topoiso 100.0 9.5E-35 3.2E-39 376.6 27.6 323 32-385 67-503 (1104)
39 1gku_B Reverse gyrase, TOP-RG; 100.0 3.9E-35 1.3E-39 378.4 22.3 323 32-386 46-468 (1054)
40 1z3i_X Similar to RAD54-like; 100.0 1.7E-33 5.7E-38 346.2 34.2 326 43-376 55-532 (644)
41 2eyq_A TRCF, transcription-rep 100.0 2.6E-33 8.7E-38 364.4 34.8 313 32-372 592-922 (1151)
42 3dmq_A RNA polymerase-associat 100.0 7.1E-34 2.4E-38 364.0 28.5 348 43-397 153-638 (968)
43 1gm5_A RECG; helicase, replica 100.0 3.8E-34 1.3E-38 360.4 17.6 317 32-375 358-700 (780)
44 1tf5_A Preprotein translocase 100.0 4.2E-32 1.4E-36 341.6 30.0 327 38-374 79-547 (844)
45 3h1t_A Type I site-specific re 100.0 5.9E-33 2E-37 334.3 20.7 307 43-361 178-545 (590)
46 2fsf_A Preprotein translocase 100.0 2.3E-31 7.9E-36 334.6 24.1 326 39-374 71-585 (853)
47 2xau_A PRE-mRNA-splicing facto 100.0 7.1E-31 2.4E-35 330.1 28.0 335 20-372 70-443 (773)
48 2jlq_A Serine protease subunit 100.0 1E-31 3.5E-36 317.1 19.1 286 40-370 1-309 (451)
49 2whx_A Serine protease/ntpase/ 100.0 7.6E-32 2.6E-36 331.8 17.7 299 41-383 169-492 (618)
50 1nkt_A Preprotein translocase 100.0 1.5E-30 5.2E-35 327.9 28.8 329 38-376 107-621 (922)
51 1yks_A Genome polyprotein [con 100.0 3.9E-32 1.4E-36 320.5 8.7 285 54-382 4-312 (440)
52 2wv9_A Flavivirin protease NS2 100.0 2.6E-31 8.9E-36 330.1 13.8 302 35-380 202-544 (673)
53 2v6i_A RNA helicase; membrane, 100.0 9.1E-30 3.1E-34 299.4 23.1 268 58-369 2-288 (431)
54 2z83_A Helicase/nucleoside tri 100.0 1E-30 3.5E-35 309.6 13.9 274 51-372 14-313 (459)
55 3o8b_A HCV NS3 protease/helica 100.0 4.1E-30 1.4E-34 319.2 14.8 276 43-373 217-515 (666)
56 1vec_A ATP-dependent RNA helic 100.0 4.3E-28 1.5E-32 252.6 23.4 198 22-220 3-205 (206)
57 3rc3_A ATP-dependent RNA helic 100.0 3E-28 1E-32 303.2 25.8 283 53-382 150-454 (677)
58 3fe2_A Probable ATP-dependent 100.0 2.1E-28 7.1E-33 264.2 20.6 207 17-224 24-239 (242)
59 2oxc_A Probable ATP-dependent 100.0 3.5E-28 1.2E-32 260.6 21.9 210 12-222 14-228 (230)
60 1qde_A EIF4A, translation init 100.0 7.8E-28 2.7E-32 254.2 23.7 205 18-224 10-218 (224)
61 1q0u_A Bstdead; DEAD protein, 100.0 5.2E-28 1.8E-32 256.5 22.3 204 20-224 2-213 (219)
62 2pl3_A Probable ATP-dependent 100.0 4.7E-28 1.6E-32 258.9 21.3 215 8-223 11-233 (236)
63 3iuy_A Probable ATP-dependent 100.0 7.1E-28 2.4E-32 256.3 20.6 207 13-221 10-227 (228)
64 3bor_A Human initiation factor 100.0 1.1E-27 3.7E-32 258.4 22.0 204 18-223 26-235 (237)
65 3fmo_B ATP-dependent RNA helic 100.0 1.8E-27 6.1E-32 268.2 24.0 205 18-223 88-298 (300)
66 1wrb_A DJVLGB; RNA helicase, D 100.0 7.3E-28 2.5E-32 260.4 17.9 215 17-232 18-249 (253)
67 2gxq_A Heat resistant RNA depe 100.0 2.2E-27 7.4E-32 246.9 20.3 197 23-222 2-205 (207)
68 1t6n_A Probable ATP-dependent 100.0 1.4E-27 4.7E-32 252.3 19.1 200 21-221 13-219 (220)
69 3ber_A Probable ATP-dependent 100.0 1.7E-27 5.9E-32 260.4 20.0 203 18-222 39-247 (249)
70 3dkp_A Probable ATP-dependent 99.9 7E-27 2.4E-31 251.2 21.1 207 17-224 20-242 (245)
71 3ly5_A ATP-dependent RNA helic 99.9 2.4E-26 8.3E-31 253.0 18.6 196 22-218 52-258 (262)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 4.4E-25 1.5E-29 285.2 26.4 324 32-370 253-707 (1038)
73 3jux_A Protein translocase sub 99.9 8E-24 2.7E-28 263.6 32.0 327 39-386 72-608 (822)
74 1c4o_A DNA nucleotide excision 99.9 3.7E-24 1.3E-28 265.5 26.2 197 265-473 439-645 (664)
75 2d7d_A Uvrabc system protein B 99.9 8.1E-23 2.8E-27 253.5 17.5 203 265-471 445-658 (661)
76 2ipc_A Preprotein translocase 99.9 1.7E-20 6E-25 237.1 30.3 128 39-174 76-215 (997)
77 2hjv_A ATP-dependent RNA helic 99.9 3.9E-21 1.4E-25 197.9 18.7 153 229-389 7-159 (163)
78 2rb4_A ATP-dependent RNA helic 99.9 1E-20 3.5E-25 196.5 19.3 154 229-389 5-164 (175)
79 2p6n_A ATP-dependent RNA helic 99.8 6.3E-21 2.1E-25 203.3 16.0 165 210-383 8-173 (191)
80 1fuk_A Eukaryotic initiation f 99.8 9.5E-21 3.2E-25 195.1 16.7 153 232-391 4-156 (165)
81 3b6e_A Interferon-induced heli 99.8 4.6E-21 1.6E-25 199.2 13.8 168 32-201 22-216 (216)
82 1t5i_A C_terminal domain of A 99.8 1.6E-20 5.4E-25 196.1 16.7 151 231-389 5-156 (172)
83 2vl7_A XPD; helicase, unknown 99.8 5.7E-20 1.9E-24 222.6 20.5 111 254-371 374-520 (540)
84 3eaq_A Heat resistant RNA depe 99.8 6.1E-20 2.1E-24 197.7 18.2 142 251-392 17-158 (212)
85 2jgn_A DBX, DDX3, ATP-dependen 99.8 3.3E-20 1.1E-24 196.3 15.6 149 229-385 17-166 (185)
86 3crv_A XPD/RAD3 related DNA he 99.8 6.6E-18 2.3E-22 204.7 27.9 309 43-371 3-530 (551)
87 1rif_A DAR protein, DNA helica 99.8 3.5E-19 1.2E-23 196.9 15.1 153 43-206 113-266 (282)
88 3i32_A Heat resistant RNA depe 99.8 1.1E-18 3.9E-23 199.1 19.6 142 252-393 15-156 (300)
89 2yjt_D ATP-dependent RNA helic 99.6 1.4E-20 4.8E-25 195.0 0.0 136 252-387 17-152 (170)
90 3llm_A ATP-dependent RNA helic 99.7 5E-17 1.7E-21 176.0 18.4 162 40-206 58-222 (235)
91 1z5z_A Helicase of the SNF2/RA 99.7 8.1E-18 2.8E-22 189.0 10.9 126 251-376 96-228 (271)
92 2fz4_A DNA repair protein RAD2 99.7 1.1E-16 3.7E-21 175.4 16.6 139 43-206 93-232 (237)
93 4a15_A XPD helicase, ATP-depen 99.7 3.5E-15 1.2E-19 184.6 24.6 316 42-371 2-583 (620)
94 3hgt_A HDA1 complex subunit 3; 98.8 9.6E-09 3.3E-13 120.2 12.1 121 255-381 116-246 (328)
95 1w36_D RECD, exodeoxyribonucle 98.4 9.3E-07 3.2E-11 109.8 11.1 145 45-201 151-298 (608)
96 4b3f_X DNA-binding protein smu 97.8 1.8E-05 6.3E-10 98.4 7.6 67 43-113 189-256 (646)
97 2gk6_A Regulator of nonsense t 97.8 0.0002 7E-09 89.2 15.3 70 41-113 178-247 (624)
98 3upu_A ATP-dependent DNA helic 97.7 0.00019 6.6E-09 85.9 14.3 144 32-200 14-163 (459)
99 3e1s_A Exodeoxyribonuclease V, 97.7 6.7E-05 2.3E-09 93.1 10.1 122 43-200 189-314 (574)
100 2xzl_A ATP-dependent helicase 97.7 0.00017 5.9E-09 92.8 13.0 70 41-113 358-427 (802)
101 3lfu_A DNA helicase II; SF1 he 97.7 0.002 6.7E-08 79.2 21.6 71 42-114 8-78 (647)
102 2wjy_A Regulator of nonsense t 97.5 0.00018 6.3E-09 92.5 10.6 70 41-113 354-423 (800)
103 2o0j_A Terminase, DNA packagin 97.2 0.0038 1.3E-07 74.8 15.4 121 43-175 163-287 (385)
104 3cpe_A Terminase, DNA packagin 97.0 0.0076 2.6E-07 74.9 15.9 121 43-175 163-287 (592)
105 3ec2_A DNA replication protein 95.6 0.05 1.7E-06 56.5 10.3 38 45-83 16-62 (180)
106 3vkw_A Replicase large subunit 95.6 0.026 8.8E-07 69.1 9.3 106 61-201 164-269 (446)
107 2orw_A Thymidine kinase; TMTK, 95.5 0.032 1.1E-06 59.8 8.6 39 58-100 3-41 (184)
108 2b8t_A Thymidine kinase; deoxy 95.5 0.064 2.2E-06 60.0 11.2 90 59-174 13-102 (223)
109 1pjr_A PCRA; DNA repair, DNA r 95.4 0.032 1.1E-06 70.9 9.9 110 42-172 10-121 (724)
110 1xx6_A Thymidine kinase; NESG, 95.1 0.063 2.2E-06 58.6 9.6 36 61-100 11-46 (191)
111 2j9r_A Thymidine kinase; TK1, 95.1 0.035 1.2E-06 62.2 7.8 37 61-101 31-67 (214)
112 2chg_A Replication factor C sm 95.1 0.18 6.3E-06 51.7 12.4 41 160-201 101-141 (226)
113 1fnn_A CDC6P, cell division co 94.9 0.071 2.4E-06 60.6 9.8 35 60-97 46-80 (389)
114 1uaa_A REP helicase, protein ( 94.6 0.036 1.2E-06 69.4 6.9 70 43-114 2-71 (673)
115 1l8q_A Chromosomal replication 94.5 0.16 5.4E-06 57.6 11.2 36 59-98 38-73 (324)
116 3te6_A Regulatory protein SIR3 94.4 0.37 1.3E-05 56.6 14.2 27 58-85 45-71 (318)
117 1a5t_A Delta prime, HOLB; zinc 94.2 0.14 4.7E-06 59.1 10.1 40 44-84 3-49 (334)
118 2v1u_A Cell division control p 94.2 0.25 8.6E-06 55.8 11.9 25 58-83 44-68 (387)
119 2orv_A Thymidine kinase; TP4A 94.1 0.064 2.2E-06 61.1 6.9 37 60-100 21-57 (234)
120 3syl_A Protein CBBX; photosynt 94.0 0.097 3.3E-06 58.3 7.9 24 59-83 68-91 (309)
121 2qby_B CDC6 homolog 3, cell di 93.7 0.37 1.3E-05 55.0 12.1 24 59-83 46-69 (384)
122 1jbk_A CLPB protein; beta barr 93.7 1.8 6E-05 43.5 15.7 25 59-84 44-68 (195)
123 2qby_A CDC6 homolog 1, cell di 93.6 0.34 1.2E-05 54.7 11.4 39 58-97 45-83 (386)
124 1d2n_A N-ethylmaleimide-sensit 93.5 0.66 2.3E-05 51.3 13.5 18 59-76 65-82 (272)
125 2w58_A DNAI, primosome compone 93.5 0.27 9.4E-06 51.7 9.8 34 59-96 55-88 (202)
126 2p65_A Hypothetical protein PF 93.4 0.29 9.8E-06 49.4 9.6 26 58-84 43-68 (187)
127 3e2i_A Thymidine kinase; Zn-bi 93.0 0.089 3E-06 59.4 5.6 37 61-101 31-67 (219)
128 1w4r_A Thymidine kinase; type 92.9 0.11 3.7E-06 57.7 6.0 36 60-99 22-57 (195)
129 2kjq_A DNAA-related protein; s 92.7 0.066 2.3E-06 55.7 3.8 20 57-76 35-54 (149)
130 3u61_B DNA polymerase accessor 92.5 0.3 1E-05 55.1 9.0 40 161-200 105-144 (324)
131 2z4s_A Chromosomal replication 92.4 0.57 1.9E-05 56.5 11.7 38 59-98 131-168 (440)
132 3h4m_A Proteasome-activating n 92.4 0.21 7.3E-06 55.1 7.5 19 58-76 51-69 (285)
133 2r2a_A Uncharacterized protein 92.3 0.23 7.9E-06 54.5 7.5 20 61-80 8-27 (199)
134 1iqp_A RFCS; clamp loader, ext 91.8 0.62 2.1E-05 51.7 10.3 39 160-199 109-147 (327)
135 1w5s_A Origin recognition comp 91.8 0.47 1.6E-05 54.5 9.6 23 60-83 52-76 (412)
136 1sxj_D Activator 1 41 kDa subu 91.6 0.35 1.2E-05 54.5 8.2 40 160-200 132-171 (353)
137 1njg_A DNA polymerase III subu 91.6 1.3 4.5E-05 45.8 11.8 39 161-200 126-164 (250)
138 3kl4_A SRP54, signal recogniti 91.6 0.39 1.3E-05 58.6 9.1 128 61-213 100-234 (433)
139 3co5_A Putative two-component 91.5 0.23 7.9E-06 50.6 6.1 21 55-75 24-44 (143)
140 3bos_A Putative DNA replicatio 91.5 0.22 7.5E-06 52.5 6.0 26 58-84 52-77 (242)
141 3u4q_A ATP-dependent helicase/ 91.4 0.24 8.1E-06 66.8 7.7 123 43-172 10-138 (1232)
142 2zpa_A Uncharacterized protein 91.2 0.33 1.1E-05 62.2 8.3 113 43-203 175-289 (671)
143 1sxj_E Activator 1 40 kDa subu 91.2 0.59 2E-05 53.1 9.5 43 160-203 133-175 (354)
144 2w0m_A SSO2452; RECA, SSPF, un 90.6 1.6 5.5E-05 45.9 11.5 36 58-97 23-58 (235)
145 1g5t_A COB(I)alamin adenosyltr 90.5 1.6 5.5E-05 48.6 11.9 132 59-210 29-171 (196)
146 3n70_A Transport activator; si 90.3 0.18 6.1E-06 51.4 3.9 38 163-201 78-115 (145)
147 2qgz_A Helicase loader, putati 89.8 0.44 1.5E-05 54.9 7.0 36 58-97 152-188 (308)
148 2qz4_A Paraplegin; AAA+, SPG7, 89.7 1.6 5.4E-05 47.3 10.8 18 59-76 40-57 (262)
149 2qp9_X Vacuolar protein sortin 89.5 1.6 5.3E-05 51.2 11.4 18 59-76 85-102 (355)
150 3eie_A Vacuolar protein sortin 89.3 0.85 2.9E-05 52.2 8.8 18 59-76 52-69 (322)
151 2gno_A DNA polymerase III, gam 89.1 1.2 4.2E-05 51.5 9.9 39 160-199 81-119 (305)
152 2dr3_A UPF0273 protein PH0284; 88.9 1.4 4.9E-05 47.0 9.6 51 58-113 23-73 (247)
153 3vfd_A Spastin; ATPase, microt 88.7 1.5 5E-05 51.5 10.4 19 58-76 148-166 (389)
154 2bjv_A PSP operon transcriptio 87.8 0.97 3.3E-05 49.7 7.7 20 57-76 28-47 (265)
155 3dm5_A SRP54, signal recogniti 87.1 3.2 0.00011 51.0 12.3 128 61-213 103-235 (443)
156 1sxj_B Activator 1 37 kDa subu 87.0 0.98 3.4E-05 50.0 7.2 38 161-199 107-144 (323)
157 3uk6_A RUVB-like 2; hexameric 86.8 7.1 0.00024 44.6 14.2 24 59-83 71-94 (368)
158 3oiy_A Reverse gyrase helicase 86.7 1.7 5.8E-05 50.5 9.3 79 264-342 63-148 (414)
159 1gm5_A RECG; helicase, replica 86.6 1.5 5.1E-05 57.1 9.5 79 266-344 418-501 (780)
160 2fna_A Conserved hypothetical 86.5 23 0.00078 39.5 17.7 37 162-199 138-177 (357)
161 3pfi_A Holliday junction ATP-d 86.4 2 6.8E-05 48.7 9.4 18 59-76 56-73 (338)
162 1jr3_A DNA polymerase III subu 85.0 4.5 0.00015 46.0 11.4 39 160-199 118-156 (373)
163 3b9p_A CG5977-PA, isoform A; A 84.8 2.3 8E-05 47.3 8.8 19 58-76 54-72 (297)
164 2q6t_A DNAB replication FORK h 84.7 10 0.00036 45.6 14.9 45 51-98 189-237 (444)
165 3hu3_A Transitional endoplasmi 84.3 1.7 5.7E-05 53.7 8.0 43 162-204 298-350 (489)
166 3pvs_A Replication-associated 84.1 0.76 2.6E-05 55.9 4.9 17 60-76 52-68 (447)
167 3cf0_A Transitional endoplasmi 84.1 2.5 8.5E-05 48.0 8.8 19 58-76 49-67 (301)
168 1sxj_A Activator 1 95 kDa subu 84.0 4.1 0.00014 49.9 11.2 41 160-202 147-189 (516)
169 1xwi_A SKD1 protein; VPS4B, AA 83.8 5.8 0.0002 45.8 11.8 18 59-76 46-63 (322)
170 1sxj_C Activator 1 40 kDa subu 83.0 2.9 9.8E-05 48.0 8.8 39 160-199 109-147 (340)
171 3d8b_A Fidgetin-like protein 1 82.5 1.4 4.8E-05 51.4 6.2 19 58-76 117-135 (357)
172 2zan_A Vacuolar protein sortin 82.1 2.6 8.9E-05 50.9 8.4 18 59-76 168-185 (444)
173 1n0w_A DNA repair protein RAD5 82.1 2.8 9.4E-05 44.8 7.7 48 51-98 12-66 (243)
174 2px0_A Flagellar biosynthesis 80.8 7.1 0.00024 45.1 11.0 116 59-205 106-227 (296)
175 2ehv_A Hypothetical protein PH 80.6 2.7 9.1E-05 45.0 7.0 21 57-77 29-49 (251)
176 4b4t_J 26S protease regulatory 80.4 8.4 0.00029 47.0 11.9 19 58-76 182-200 (405)
177 2chq_A Replication factor C sm 80.0 0.77 2.6E-05 50.8 2.7 23 60-83 40-62 (319)
178 1lv7_A FTSH; alpha/beta domain 79.9 10 0.00035 41.6 11.4 18 59-76 46-63 (257)
179 2r6a_A DNAB helicase, replicat 79.6 11 0.00037 45.6 12.5 45 51-98 192-240 (454)
180 3t15_A Ribulose bisphosphate c 79.5 3.6 0.00012 46.8 8.0 18 59-76 37-54 (293)
181 2qen_A Walker-type ATPase; unk 79.2 16 0.00056 40.6 12.9 30 45-74 17-47 (350)
182 1hqc_A RUVB; extended AAA-ATPa 79.0 2.7 9.3E-05 47.0 6.7 18 59-76 39-56 (324)
183 2v1x_A ATP-dependent DNA helic 78.6 4 0.00014 51.3 8.7 122 265-386 84-224 (591)
184 1ls1_A Signal recognition part 78.3 26 0.00089 40.4 14.5 125 61-210 101-230 (295)
185 4a1f_A DNAB helicase, replicat 78.1 23 0.00078 42.1 14.3 44 51-98 35-82 (338)
186 4ddu_A Reverse gyrase; topoiso 78.1 3.8 0.00013 55.1 8.7 79 264-342 120-205 (1104)
187 1vma_A Cell division protein F 77.9 15 0.00051 42.9 12.5 49 61-113 107-158 (306)
188 1oyw_A RECQ helicase, ATP-depe 77.3 6 0.0002 48.7 9.5 120 266-385 66-197 (523)
189 2ce7_A Cell division protein F 76.5 6.1 0.00021 48.8 9.3 18 59-76 50-67 (476)
190 2zr9_A Protein RECA, recombina 76.4 3.2 0.00011 49.0 6.6 46 50-99 47-98 (349)
191 3cmu_A Protein RECA, recombina 75.2 4.1 0.00014 58.0 8.1 46 51-100 1414-1465(2050)
192 4b4t_L 26S protease subunit RP 75.2 7.7 0.00026 47.6 9.6 18 59-76 216-233 (437)
193 2eyq_A TRCF, transcription-rep 75.0 6.1 0.00021 53.4 9.4 80 265-344 652-736 (1151)
194 3hr8_A Protein RECA; alpha and 74.9 5.1 0.00017 47.9 7.8 49 50-102 47-101 (356)
195 4b4t_M 26S protease regulatory 74.8 6.3 0.00022 48.4 8.7 55 19-76 175-233 (434)
196 3e70_C DPA, signal recognition 74.8 9.3 0.00032 45.0 9.8 53 161-213 211-264 (328)
197 4b4t_K 26S protease regulatory 74.5 10 0.00035 46.5 10.4 18 59-76 207-224 (428)
198 4b4t_I 26S protease regulatory 74.1 10 0.00035 46.9 10.2 55 19-76 176-234 (437)
199 3cf2_A TER ATPase, transitiona 73.7 7.6 0.00026 51.0 9.5 44 161-204 297-350 (806)
200 3ber_A Probable ATP-dependent 73.7 45 0.0015 36.8 14.3 80 260-343 106-196 (249)
201 1xp8_A RECA protein, recombina 73.2 6.4 0.00022 47.0 8.0 97 50-174 60-165 (366)
202 1nlf_A Regulatory protein REPA 72.8 14 0.00047 41.4 10.1 25 55-79 27-51 (279)
203 2z43_A DNA repair and recombin 72.7 3.4 0.00012 47.6 5.5 63 51-113 95-165 (324)
204 3k1j_A LON protease, ATP-depen 72.4 9.3 0.00032 47.9 9.6 23 54-76 56-78 (604)
205 1qvr_A CLPB protein; coiled co 71.9 8.4 0.00029 50.1 9.3 24 59-83 192-215 (854)
206 1r6b_X CLPA protein; AAA+, N-t 71.7 10 0.00035 48.3 9.9 25 58-83 207-231 (758)
207 4b4t_H 26S protease regulatory 71.6 11 0.00036 47.0 9.6 19 58-76 243-261 (467)
208 3hjh_A Transcription-repair-co 69.7 12 0.00041 46.4 9.5 50 58-114 14-63 (483)
209 1t6n_A Probable ATP-dependent 69.1 9.6 0.00033 40.5 7.5 75 266-343 83-168 (220)
210 1u94_A RECA protein, recombina 68.0 4.4 0.00015 48.2 5.1 46 50-99 49-100 (356)
211 1p9r_A General secretion pathw 66.6 8.2 0.00028 46.9 7.1 38 45-83 152-191 (418)
212 3pxi_A Negative regulator of g 66.1 27 0.00092 44.8 12.0 23 60-83 523-545 (758)
213 2j37_W Signal recognition part 65.9 19 0.00066 44.9 10.3 125 61-210 104-233 (504)
214 2yhs_A FTSY, cell division pro 65.4 18 0.00063 45.3 10.0 129 61-213 296-434 (503)
215 3io5_A Recombination and repai 65.2 7.7 0.00026 46.5 6.4 90 60-174 30-124 (333)
216 1q57_A DNA primase/helicase; d 65.1 46 0.0016 40.6 13.3 45 51-98 231-279 (503)
217 3cf2_A TER ATPase, transitiona 62.9 12 0.00042 49.1 8.2 18 59-76 512-529 (806)
218 2ffh_A Protein (FFH); SRP54, s 62.0 86 0.0029 38.5 14.7 127 61-212 101-232 (425)
219 3m6a_A ATP-dependent protease 61.3 7.8 0.00027 48.2 5.7 19 58-76 108-126 (543)
220 1ypw_A Transitional endoplasmi 60.9 8.2 0.00028 50.3 6.1 19 58-76 238-256 (806)
221 2oxc_A Probable ATP-dependent 60.1 17 0.00057 39.3 7.3 74 264-342 91-175 (230)
222 3u4q_B ATP-dependent helicase/ 59.1 22 0.00076 47.8 9.8 87 62-171 5-91 (1166)
223 1xti_A Probable ATP-dependent 59.0 26 0.00089 39.8 9.0 76 265-343 76-162 (391)
224 1vec_A ATP-dependent RNA helic 58.7 94 0.0032 32.4 12.5 75 265-343 71-156 (206)
225 2oap_1 GSPE-2, type II secreti 57.6 15 0.0005 45.8 7.2 38 35-74 238-276 (511)
226 2l8b_A Protein TRAI, DNA helic 57.6 8 0.00027 43.3 4.4 55 45-102 36-92 (189)
227 3fe2_A Probable ATP-dependent 56.7 25 0.00086 38.2 8.1 75 265-343 102-186 (242)
228 3bor_A Human initiation factor 55.4 51 0.0018 35.8 10.2 76 265-343 98-183 (237)
229 2jgn_A DBX, DDX3, ATP-dependen 55.3 17 0.00058 38.7 6.4 84 68-167 29-120 (185)
230 1j8m_F SRP54, signal recogniti 54.9 77 0.0026 36.7 12.1 126 61-211 101-233 (297)
231 3iu6_A Protein polybromo-1; PB 53.9 3 0.0001 44.9 0.4 40 697-736 2-41 (147)
232 2zts_A Putative uncharacterize 53.8 9.3 0.00032 40.7 4.1 37 59-98 31-67 (251)
233 2dhr_A FTSH; AAA+ protein, hex 53.1 31 0.0011 43.0 9.0 18 59-76 65-82 (499)
234 1wp9_A ATP-dependent RNA helic 52.5 58 0.002 37.3 10.5 117 264-385 51-181 (494)
235 3cmu_A Protein RECA, recombina 52.1 33 0.0011 49.3 10.0 38 57-98 1080-1117(2050)
236 2xxa_A Signal recognition part 52.0 89 0.003 38.2 12.5 127 61-211 103-234 (433)
237 2v3c_C SRP54, signal recogniti 51.8 19 0.00066 43.9 6.8 34 60-97 101-134 (432)
238 2pl3_A Probable ATP-dependent 51.4 25 0.00085 37.8 6.9 74 265-343 97-181 (236)
239 1e9r_A Conjugal transfer prote 50.9 15 0.00051 43.6 5.6 42 58-103 53-94 (437)
240 3lda_A DNA repair protein RAD5 50.0 25 0.00087 42.5 7.4 41 59-99 179-221 (400)
241 2p6n_A ATP-dependent RNA helic 48.9 26 0.00089 37.6 6.5 67 90-167 54-128 (191)
242 2og2_A Putative signal recogni 48.8 1.3E+02 0.0045 36.1 13.0 50 162-211 241-297 (359)
243 1qde_A EIF4A, translation init 48.2 20 0.00069 38.0 5.5 75 264-343 81-165 (224)
244 2gxq_A Heat resistant RNA depe 48.2 39 0.0013 35.2 7.6 75 265-343 72-154 (207)
245 3ly5_A ATP-dependent RNA helic 47.1 50 0.0017 36.7 8.7 75 265-343 126-211 (262)
246 4a2p_A RIG-I, retinoic acid in 46.5 26 0.00091 41.7 6.8 75 265-343 55-140 (556)
247 4ag6_A VIRB4 ATPase, type IV s 46.5 20 0.00067 42.1 5.6 42 57-102 34-75 (392)
248 3iuy_A Probable ATP-dependent 45.5 26 0.0009 37.4 6.0 75 265-343 94-177 (228)
249 3vkg_A Dynein heavy chain, cyt 44.3 30 0.001 51.6 8.0 77 29-107 873-954 (3245)
250 2r44_A Uncharacterized protein 43.7 17 0.00057 41.4 4.3 26 51-76 39-64 (331)
251 1w36_B RECB, exodeoxyribonucle 43.6 31 0.0011 46.7 7.4 55 60-114 18-80 (1180)
252 3tbk_A RIG-I helicase domain; 43.5 21 0.00072 42.4 5.3 75 265-343 52-137 (555)
253 3bh0_A DNAB-like replicative h 43.3 30 0.001 39.9 6.4 46 50-99 56-105 (315)
254 2hjv_A ATP-dependent RNA helic 42.8 24 0.00083 36.4 5.0 84 69-169 20-111 (163)
255 1hv8_A Putative ATP-dependent 42.1 74 0.0025 35.5 9.1 80 259-343 68-157 (367)
256 3vaa_A Shikimate kinase, SK; s 41.7 15 0.0005 39.1 3.2 20 57-76 24-43 (199)
257 2i4i_A ATP-dependent RNA helic 41.3 40 0.0014 38.7 7.0 69 88-167 274-350 (417)
258 3trf_A Shikimate kinase, SK; a 41.0 15 0.00053 37.9 3.2 19 58-76 5-23 (185)
259 1fuu_A Yeast initiation factor 40.2 62 0.0021 36.7 8.2 75 264-343 88-172 (394)
260 1ofh_A ATP-dependent HSL prote 40.2 48 0.0016 36.6 7.1 19 58-76 50-68 (310)
261 1um8_A ATP-dependent CLP prote 40.1 55 0.0019 38.0 7.9 19 58-76 72-90 (376)
262 3jvv_A Twitching mobility prot 39.8 22 0.00076 42.3 4.7 26 58-84 123-148 (356)
263 2gza_A Type IV secretion syste 39.6 28 0.00096 41.1 5.5 17 57-73 174-190 (361)
264 4akg_A Glutathione S-transfera 39.4 36 0.0012 50.1 7.5 45 32-77 894-942 (2695)
265 1s2m_A Putative ATP-dependent 39.4 1E+02 0.0036 35.2 9.9 75 265-343 89-173 (400)
266 3lw7_A Adenylate kinase relate 39.4 13 0.00045 37.0 2.3 17 60-76 3-19 (179)
267 2eyu_A Twitching motility prot 39.1 18 0.00061 41.0 3.6 28 55-83 22-49 (261)
268 1wrb_A DJVLGB; RNA helicase, D 39.1 1.5E+02 0.0053 32.1 10.8 74 266-343 101-184 (253)
269 1u0j_A DNA replication protein 39.0 37 0.0013 39.5 6.2 48 28-76 71-122 (267)
270 3hws_A ATP-dependent CLP prote 38.6 30 0.001 40.2 5.4 19 58-76 51-69 (363)
271 1nks_A Adenylate kinase; therm 38.5 45 0.0015 34.1 6.2 38 60-102 3-40 (194)
272 2rb4_A ATP-dependent RNA helic 38.2 22 0.00076 37.0 3.9 68 89-167 33-108 (175)
273 4a2q_A RIG-I, retinoic acid in 38.2 49 0.0017 42.6 7.8 75 265-343 296-381 (797)
274 1fuk_A Eukaryotic initiation f 37.7 38 0.0013 34.9 5.5 70 89-169 29-106 (165)
275 2db3_A ATP-dependent RNA helic 37.3 2E+02 0.0069 34.2 12.3 75 265-343 129-213 (434)
276 2ewv_A Twitching motility prot 37.1 19 0.00065 42.8 3.6 27 57-84 135-161 (372)
277 1z6t_A APAF-1, apoptotic prote 37.1 1.6E+02 0.0055 36.0 11.7 32 45-76 129-165 (591)
278 1qhx_A CPT, protein (chloramph 37.0 18 0.00063 36.9 3.0 18 59-76 4-21 (178)
279 3bgw_A DNAB-like replicative h 36.8 43 0.0015 40.8 6.6 45 51-99 186-234 (444)
280 2iut_A DNA translocase FTSK; n 36.2 30 0.001 44.1 5.3 41 59-99 215-255 (574)
281 3cmw_A Protein RECA, recombina 36.1 38 0.0013 48.0 6.7 97 51-175 1418-1523(1706)
282 1gku_B Reverse gyrase, TOP-RG; 35.7 44 0.0015 44.9 7.0 76 265-342 99-184 (1054)
283 2cvh_A DNA repair and recombin 35.6 36 0.0012 35.7 5.0 41 51-98 8-53 (220)
284 2ius_A DNA translocase FTSK; n 35.4 34 0.0011 43.0 5.5 27 58-84 167-193 (512)
285 4fcw_A Chaperone protein CLPB; 34.9 36 0.0012 37.9 5.1 24 60-84 49-72 (311)
286 3a8t_A Adenylate isopentenyltr 34.5 19 0.00066 43.1 3.0 17 60-76 42-58 (339)
287 1cr0_A DNA primase/helicase; R 34.5 40 0.0014 37.8 5.5 37 58-97 35-71 (296)
288 3i5x_A ATP-dependent RNA helic 34.3 68 0.0023 39.0 7.8 74 88-169 337-418 (563)
289 3fmo_B ATP-dependent RNA helic 33.8 99 0.0034 35.3 8.6 100 266-374 163-279 (300)
290 1t5i_A C_terminal domain of A 33.7 66 0.0023 33.7 6.6 84 69-169 16-107 (172)
291 3kb2_A SPBC2 prophage-derived 33.6 22 0.00077 35.7 3.0 17 60-76 3-19 (173)
292 2ze6_A Isopentenyl transferase 33.6 21 0.00072 39.9 3.0 16 61-76 4-19 (253)
293 2pt7_A CAG-ALFA; ATPase, prote 33.2 37 0.0013 39.7 5.1 17 57-73 170-186 (330)
294 3iij_A Coilin-interacting nucl 32.9 27 0.00093 36.1 3.5 20 57-76 10-29 (180)
295 3eaq_A Heat resistant RNA depe 32.8 39 0.0013 36.6 4.9 67 90-167 31-105 (212)
296 3b85_A Phosphate starvation-in 32.7 36 0.0012 37.4 4.6 34 41-74 5-38 (208)
297 1ojl_A Transcriptional regulat 32.7 28 0.00096 40.0 3.9 19 58-76 25-43 (304)
298 1y63_A LMAJ004144AAA protein; 32.5 25 0.00086 36.9 3.2 19 58-76 10-28 (184)
299 1q0u_A Bstdead; DEAD protein, 32.4 29 0.001 36.9 3.8 74 265-342 72-159 (219)
300 2i1q_A DNA repair and recombin 32.3 33 0.0011 39.2 4.4 64 50-113 85-166 (322)
301 1kag_A SKI, shikimate kinase I 31.7 29 0.001 35.3 3.5 18 58-75 4-21 (173)
302 1kgd_A CASK, peripheral plasma 31.7 27 0.00092 36.6 3.3 18 57-74 4-21 (180)
303 3nbx_X ATPase RAVA; AAA+ ATPas 31.2 46 0.0016 41.4 5.7 29 47-75 30-58 (500)
304 2j0s_A ATP-dependent RNA helic 31.1 1.1E+02 0.0036 35.4 8.3 76 264-343 104-189 (410)
305 1tue_A Replication protein E1; 31.0 55 0.0019 37.2 5.7 51 30-83 28-82 (212)
306 2ykg_A Probable ATP-dependent 30.8 45 0.0015 41.6 5.5 75 266-344 62-147 (696)
307 2yvu_A Probable adenylyl-sulfa 30.7 41 0.0014 35.0 4.4 34 59-96 14-47 (186)
308 3sqw_A ATP-dependent RNA helic 30.0 77 0.0026 39.1 7.3 74 88-169 286-367 (579)
309 1zp6_A Hypothetical protein AT 30.0 25 0.00085 36.4 2.6 18 57-74 8-25 (191)
310 1lvg_A Guanylate kinase, GMP k 29.9 30 0.001 37.1 3.3 18 57-74 3-20 (198)
311 3tau_A Guanylate kinase, GMP k 29.7 30 0.001 37.2 3.2 17 58-74 8-24 (208)
312 2j41_A Guanylate kinase; GMP, 29.6 27 0.00093 36.4 2.9 19 57-75 5-23 (207)
313 2r62_A Cell division protease 29.4 21 0.00073 39.1 2.1 19 58-76 44-62 (268)
314 3cm0_A Adenylate kinase; ATP-b 29.4 23 0.00077 36.6 2.2 19 58-76 4-22 (186)
315 1kht_A Adenylate kinase; phosp 29.1 31 0.0011 35.3 3.2 19 58-76 3-21 (192)
316 2qor_A Guanylate kinase; phosp 29.1 33 0.0011 36.5 3.5 20 56-75 10-29 (204)
317 1ly1_A Polynucleotide kinase; 29.1 30 0.001 35.1 3.0 16 61-76 5-20 (181)
318 1ex7_A Guanylate kinase; subst 29.0 21 0.0007 39.1 1.9 16 59-74 2-17 (186)
319 3eiq_A Eukaryotic initiation f 28.9 1.3E+02 0.0044 34.5 8.4 77 264-343 107-193 (414)
320 2c95_A Adenylate kinase 1; tra 28.0 35 0.0012 35.3 3.3 22 55-76 6-27 (196)
321 1zuh_A Shikimate kinase; alpha 27.6 33 0.0011 35.0 3.0 18 59-76 8-25 (168)
322 2rhm_A Putative kinase; P-loop 27.5 32 0.0011 35.4 3.0 18 59-76 6-23 (193)
323 3exa_A TRNA delta(2)-isopenten 27.4 30 0.001 41.4 3.0 17 60-76 5-21 (322)
324 2q5c_A NTRC family transcripti 27.3 2.9E+02 0.0099 30.3 10.5 112 266-388 5-120 (196)
325 3ntv_A MW1564 protein; rossman 27.0 2.3E+02 0.0079 30.7 9.6 105 29-144 40-149 (232)
326 3tr0_A Guanylate kinase, GMP k 26.8 33 0.0011 35.8 2.9 18 57-74 6-23 (205)
327 3foz_A TRNA delta(2)-isopenten 26.8 31 0.0011 41.1 3.0 16 61-76 13-28 (316)
328 3b6e_A Interferon-induced heli 26.7 62 0.0021 33.7 4.9 75 265-343 82-172 (216)
329 2v9p_A Replication protein E1; 26.7 38 0.0013 39.8 3.7 35 57-98 125-159 (305)
330 3dr5_A Putative O-methyltransf 26.3 3.7E+02 0.013 29.4 11.1 91 30-129 23-118 (221)
331 2c9o_A RUVB-like 1; hexameric 26.3 48 0.0017 40.0 4.6 18 59-76 64-81 (456)
332 3t61_A Gluconokinase; PSI-biol 26.2 35 0.0012 36.0 3.0 18 59-76 19-36 (202)
333 1rj9_A FTSY, signal recognitio 26.0 62 0.0021 37.6 5.3 34 60-97 104-137 (304)
334 4gl2_A Interferon-induced heli 25.9 14 0.00049 45.9 0.0 74 266-343 57-146 (699)
335 3crm_A TRNA delta(2)-isopenten 25.8 33 0.0011 40.7 3.0 17 60-76 7-23 (323)
336 1xjc_A MOBB protein homolog; s 25.7 55 0.0019 35.5 4.4 23 61-84 7-29 (169)
337 3sfz_A APAF-1, apoptotic pepti 25.6 1.8E+02 0.0062 38.2 9.9 16 61-76 150-165 (1249)
338 2v54_A DTMP kinase, thymidylat 25.3 30 0.001 36.1 2.3 19 58-76 4-22 (204)
339 1via_A Shikimate kinase; struc 25.2 41 0.0014 34.6 3.2 17 60-76 6-22 (175)
340 2bdt_A BH3686; alpha-beta prot 25.1 39 0.0013 35.2 3.0 15 61-75 5-19 (189)
341 3nwj_A ATSK2; P loop, shikimat 24.9 45 0.0015 37.8 3.8 20 57-76 47-66 (250)
342 3b9q_A Chloroplast SRP recepto 24.5 54 0.0019 38.0 4.4 33 61-97 103-135 (302)
343 1qf9_A UMP/CMP kinase, protein 24.4 40 0.0014 34.5 3.0 17 60-76 8-24 (194)
344 2r8r_A Sensor protein; KDPD, P 24.4 67 0.0023 36.7 5.0 23 60-82 8-30 (228)
345 1v5w_A DMC1, meiotic recombina 24.1 63 0.0022 37.8 4.9 63 51-113 110-180 (343)
346 1tev_A UMP-CMP kinase; ploop, 24.1 42 0.0014 34.4 3.0 18 59-76 4-21 (196)
347 1nij_A Hypothetical protein YJ 24.1 50 0.0017 38.2 4.0 33 61-99 7-39 (318)
348 4eun_A Thermoresistant glucoki 23.9 44 0.0015 35.5 3.2 18 58-75 29-46 (200)
349 3eod_A Protein HNR; response r 23.8 4.7E+02 0.016 24.7 13.0 91 89-209 6-96 (130)
350 2jaq_A Deoxyguanosine kinase; 23.7 42 0.0014 34.7 3.0 17 60-76 2-18 (205)
351 3d3q_A TRNA delta(2)-isopenten 23.7 39 0.0013 40.5 3.0 17 60-76 9-25 (340)
352 3uie_A Adenylyl-sulfate kinase 23.6 42 0.0014 35.6 3.0 19 58-76 25-43 (200)
353 3fht_A ATP-dependent RNA helic 23.4 89 0.003 35.7 5.8 67 90-167 266-340 (412)
354 1aky_A Adenylate kinase; ATP:A 23.2 46 0.0016 35.6 3.3 19 58-76 4-22 (220)
355 1knq_A Gluconate kinase; ALFA/ 23.2 40 0.0014 34.6 2.7 18 59-76 9-26 (175)
356 1zak_A Adenylate kinase; ATP:A 23.1 48 0.0016 35.5 3.4 18 59-76 6-23 (222)
357 1in4_A RUVB, holliday junction 23.1 60 0.0021 37.5 4.4 18 59-76 52-69 (334)
358 3mm4_A Histidine kinase homolo 23.1 6.9E+02 0.023 26.4 13.6 119 60-202 22-161 (206)
359 3fb4_A Adenylate kinase; psych 22.9 44 0.0015 35.4 3.0 17 60-76 2-18 (216)
360 3kta_A Chromosome segregation 22.8 47 0.0016 34.2 3.1 15 60-74 28-42 (182)
361 1e6c_A Shikimate kinase; phosp 22.6 47 0.0016 33.7 3.0 17 60-76 4-20 (173)
362 2bwj_A Adenylate kinase 5; pho 22.5 46 0.0016 34.5 3.0 20 57-76 11-30 (199)
363 2qmh_A HPR kinase/phosphorylas 22.4 35 0.0012 38.6 2.2 19 58-76 34-52 (205)
364 1yks_A Genome polyprotein [con 22.4 79 0.0027 38.1 5.4 65 90-166 177-245 (440)
365 2iyv_A Shikimate kinase, SK; t 22.3 47 0.0016 34.3 3.0 17 60-76 4-20 (184)
366 1rz3_A Hypothetical protein rb 22.3 69 0.0024 34.1 4.4 15 61-75 25-39 (201)
367 1sky_E F1-ATPase, F1-ATP synth 22.3 37 0.0013 42.3 2.6 29 51-79 141-172 (473)
368 1ixz_A ATP-dependent metallopr 22.2 45 0.0015 36.4 3.0 17 59-75 50-66 (254)
369 1z6g_A Guanylate kinase; struc 22.2 53 0.0018 35.8 3.5 18 57-74 22-39 (218)
370 2z0m_A 337AA long hypothetical 22.1 1.2E+02 0.0041 33.5 6.3 73 265-342 56-138 (337)
371 3a00_A Guanylate kinase, GMP k 22.1 53 0.0018 34.5 3.4 15 60-74 3-17 (186)
372 3dl0_A Adenylate kinase; phosp 21.9 48 0.0016 35.2 3.0 17 60-76 2-18 (216)
373 2l82_A Designed protein OR32; 21.8 1.6E+02 0.0056 30.8 6.7 51 268-318 5-55 (162)
374 1jjv_A Dephospho-COA kinase; P 21.7 48 0.0016 34.9 3.0 15 61-75 5-19 (206)
375 1pzn_A RAD51, DNA repair and r 21.4 60 0.0021 38.2 4.0 37 61-98 134-173 (349)
376 1zu4_A FTSY; GTPase, signal re 21.3 83 0.0028 36.9 5.1 33 61-97 108-140 (320)
377 1zd8_A GTP:AMP phosphotransfer 21.2 49 0.0017 35.7 3.0 19 58-76 7-25 (227)
378 1uf9_A TT1252 protein; P-loop, 21.2 50 0.0017 34.3 2.9 17 60-76 10-26 (203)
379 1cke_A CK, MSSA, protein (cyti 21.2 50 0.0017 35.1 3.0 18 59-76 6-23 (227)
380 3ney_A 55 kDa erythrocyte memb 21.2 53 0.0018 36.4 3.3 18 57-74 18-35 (197)
381 2ipc_A Preprotein translocase 21.1 1.9E+02 0.0064 39.3 8.7 55 264-324 119-177 (997)
382 3eph_A TRNA isopentenyltransfe 21.1 45 0.0015 41.0 2.9 16 61-76 5-20 (409)
383 1ak2_A Adenylate kinase isoenz 21.1 48 0.0016 36.1 2.9 19 58-76 16-34 (233)
384 1g8p_A Magnesium-chelatase 38 20.9 53 0.0018 37.1 3.3 19 58-76 45-63 (350)
385 2cdn_A Adenylate kinase; phosp 20.9 51 0.0018 34.7 3.0 17 60-76 22-38 (201)
386 3dkp_A Probable ATP-dependent 20.9 64 0.0022 34.8 3.8 75 266-343 99-185 (245)
387 2fsf_A Preprotein translocase 20.9 1.9E+02 0.0066 38.7 8.8 55 264-324 114-172 (853)
388 3grc_A Sensor protein, kinase; 20.8 2E+02 0.0067 27.7 6.8 81 278-358 39-126 (140)
389 3a4m_A L-seryl-tRNA(SEC) kinas 20.7 75 0.0026 35.4 4.4 18 59-76 5-22 (260)
390 3pxg_A Negative regulator of g 20.6 56 0.0019 39.8 3.6 26 58-84 201-226 (468)
391 2d7d_A Uvrabc system protein B 20.6 89 0.0031 39.9 5.6 74 89-173 444-525 (661)
392 2pbr_A DTMP kinase, thymidylat 20.5 54 0.0018 33.6 3.0 16 61-76 3-18 (195)
393 3gk5_A Uncharacterized rhodane 20.3 92 0.0031 30.5 4.4 36 265-300 55-90 (108)
394 3pey_A ATP-dependent RNA helic 20.3 84 0.0029 35.4 4.7 72 89-171 242-321 (395)
395 2plr_A DTMP kinase, probable t 20.2 55 0.0019 34.1 3.0 19 58-76 4-22 (213)
396 2pt5_A Shikimate kinase, SK; a 20.1 56 0.0019 33.1 3.0 17 60-76 2-18 (168)
397 1ukz_A Uridylate kinase; trans 20.0 55 0.0019 34.3 3.0 16 60-75 17-32 (203)
398 2if2_A Dephospho-COA kinase; a 20.0 55 0.0019 34.4 3.0 16 60-75 3-18 (204)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.3e-49 Score=460.04 Aligned_cols=355 Identities=26% Similarity=0.491 Sum_probs=309.6
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC----CCCCe
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP----VQQPQ 92 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr----~qggR 92 (2355)
+.++.+|+++.+.+ +++.|...||..|+|+|.++++.++.++++|+++|||+|||++|+++++..+.... ..+++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCcc
Confidence 35678999999998 99999999999999999999999999999999999999999999999998887532 23678
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEec
Q psy8497 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMD 168 (2355)
Q Consensus 93 VLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVD 168 (2355)
+|||+|+++|+.|+.+.++++.... ++++.+++|+..... ....++|+|+||++|.+++....+.+..+++||||
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred EEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 9999999999999999999997665 688888888865431 22458999999999999998888888999999999
Q ss_pred ccchhcccChHHHHHHHHHhC--CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCc
Q psy8497 169 EADKLINTGFVEDITWIYSQL--PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPS 246 (2355)
Q Consensus 169 EAHRLkN~GF~SrLeeILs~L--ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~s 246 (2355)
|||++.+.+|...+..++..+ +...|+|++|||++..+...+..++.++..+.+.........+.+.+..+...
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~---- 286 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKY---- 286 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGG----
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcH----
Confidence 999999999999999999885 56789999999999998888888888888877766555556666666655432
Q ss_pred chhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q psy8497 247 LRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA 326 (2355)
Q Consensus 247 Lt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG 326 (2355)
.+...|..++..... ++||||++++.++.|++.|...++.+..+||++++.+|..+++.|++|+++|||||++++
T Consensus 287 ----~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~ 361 (434)
T 2db3_A 287 ----AKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVAS 361 (434)
T ss_dssp ----GHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGT
T ss_pred ----HHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhh
Confidence 355667777776554 599999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEccc-CHHHHHHHHH
Q psy8497 327 RGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE-SLVKFHSLMG 382 (2355)
Q Consensus 327 EGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd-DVEeIEsLrR 382 (2355)
+|||+|.+++||+||.|+++..|+||+||+||.|+.|.+++|+... +......+.+
T Consensus 362 rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~ 418 (434)
T 2db3_A 362 RGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVK 418 (434)
T ss_dssp SSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHH
T ss_pred CCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999843 4444444443
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.3e-49 Score=449.33 Aligned_cols=366 Identities=33% Similarity=0.553 Sum_probs=318.9
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
++...+|+.+.+.+ +++.|..+||..|+|+|.++++.++.++++|+++|||+|||++++++++..+.. .....++|||
T Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil 111 (410)
T 2j0s_A 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-QVRETQALIL 111 (410)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-TSCSCCEEEE
T ss_pred ccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-ccCCceEEEE
Confidence 35567899999888 999999999999999999999999999999999999999999999999877642 2356789999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
+|+++|+.|+.+.+.+++... ++.+..+.|+...... ...++|+|+||++|.+++....+.+..+++|||||||+
T Consensus 112 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~ 190 (410)
T 2j0s_A 112 APTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE 190 (410)
T ss_dssp CSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred cCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH
Confidence 999999999999999998766 7888888887654321 12368999999999999988878888999999999999
Q ss_pred hcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 173 LINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
+.+.++...+..++..++...|+|++|||++......+..++..+..+...........+.+.+..+... ..+
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k 263 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE-------EWK 263 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST-------THH
T ss_pred HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH-------HhH
Confidence 9999999999999999999999999999999888777778888887776665555555666666655433 124
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...|..++......++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|
T Consensus 264 ~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 264 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcc
Confidence 45666666666667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccccccc
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNV 392 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~ 392 (2355)
.+++||+++.|+++..|+||+||+||.|++|.+++|+...+...+..+.+.+..++...+
T Consensus 344 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 344 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp TEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred cCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecc
Confidence 999999999999999999999999999999999999999999999999888777665443
No 3
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7.1e-48 Score=429.04 Aligned_cols=356 Identities=27% Similarity=0.467 Sum_probs=307.5
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
..+|+++.+++ +++.|...||..|+|+|.++++.++.+ +++||++|||+|||++++++++..+.. ...++++|||+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP-EDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-TCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-CCCCccEEEEC
Confidence 46899999988 999999999999999999999999998 899999999999999999999887653 23567899999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc-c
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN-T 176 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN-~ 176 (2355)
|+++|+.|+.+++++++... ++.+..+.++.........++|+|+||++|..++....+.+..+++|||||||++.+ .
T Consensus 83 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~ 161 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQ 161 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCcc
Confidence 99999999999999997665 677888888776655555689999999999999988888889999999999999887 6
Q ss_pred ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHH
Q psy8497 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256 (2355)
Q Consensus 177 GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaL 256 (2355)
++...+..+...++...|+|++|||++......+..++..+..+...........+.+.+..+... ..+...+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l 234 (395)
T 3pey_A 162 GLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE-------ADKFDVL 234 (395)
T ss_dssp THHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSH-------HHHHHHH
T ss_pred ccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCch-------HHHHHHH
Confidence 788888889999998999999999999888888888888877776665555555555555444322 2345666
Q ss_pred HHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccE
Q psy8497 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDL 336 (2355)
Q Consensus 257 LqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDT 336 (2355)
..++......++||||+++..++.+++.|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|.+++
T Consensus 235 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 314 (395)
T 3pey_A 235 TELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 314 (395)
T ss_dssp HHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCE
Confidence 77777777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC------CHhHHHHHhhccCCCCCccEEEEEEcccCH-HHHHHHHHhhc
Q psy8497 337 VINLEIPH------DAATYLHRMGRAGRYGTRGLVITIVSAESL-VKFHSLMGEIN 385 (2355)
Q Consensus 337 VIIyDSP~------SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV-EeIEsLrReLK 385 (2355)
||+++.|+ ++..|+||+|||||.|+.+.+++|+...+. ..+..+...+.
T Consensus 315 Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 315 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999 999999999999999999999999986544 44555544433
No 4
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.3e-48 Score=433.34 Aligned_cols=367 Identities=32% Similarity=0.510 Sum_probs=314.3
Q ss_pred cccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCC
Q psy8497 14 VLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90 (2355)
Q Consensus 14 ~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qg 90 (2355)
....+....+|+.+.+.+ +++.|..+||..|+|+|.++++.++.+ +++||++|||+|||++|+++++..+.. ....
T Consensus 17 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-~~~~ 95 (412)
T 3fht_A 17 PNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKY 95 (412)
T ss_dssp TTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-TSCS
T ss_pred CCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh-cCCC
Confidence 344456788999999988 999999999999999999999999987 899999999999999999999987763 2345
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-CCCCcEEEECHHHHHHHHHh-hcccCcCceEEEec
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIMD 168 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-irq~DILVTTPErLLDLLdr-r~LdLSkIdLLIVD 168 (2355)
+++|||+|+++|+.|+.++++++....+++.+....++...... ....+|+|+||++|..++.. ..+.+..+++||||
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 68999999999999999999999888888899888887665433 33479999999999888855 55667889999999
Q ss_pred ccchhcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcc
Q psy8497 169 EADKLIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSL 247 (2355)
Q Consensus 169 EAHRLkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sL 247 (2355)
|||++.+ .++...+..++..++...|+|++|||++......+..++..+..+...........+.+.+..+...
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 250 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR----- 250 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH-----
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh-----
Confidence 9999886 6778888888999998999999999999998888888888888887776665556666665554332
Q ss_pred hhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q psy8497 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327 (2355)
Q Consensus 248 t~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGE 327 (2355)
..+...|..++......++||||++++.++.++..|...++.+..+||+|+..+|..+++.|++|+++|||||+++++
T Consensus 251 --~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 328 (412)
T 3fht_A 251 --DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 328 (412)
T ss_dssp --HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTS
T ss_pred --HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcccc
Confidence 234566667776666679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEecCCC------CHhHHHHHhhccCCCCCccEEEEEEcccC-HHHHHHHHHhhcccc
Q psy8497 328 GIDAANVDLVINLEIPH------DAATYLHRMGRAGRYGTRGLVITIVSAES-LVKFHSLMGEINLDH 388 (2355)
Q Consensus 328 GLDLPaVDTVIIyDSP~------SPqSYIQRIGRAGRiGQkGkVIVLVSsdD-VEeIEsLrReLKLKL 388 (2355)
|||+|++++||+++.|+ +...|+||+|||||.|+.|.+++++...+ ...+..+...+...+
T Consensus 329 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 396 (412)
T 3fht_A 329 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 396 (412)
T ss_dssp SCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCC
T ss_pred CCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCcc
Confidence 99999999999999995 67899999999999999999999997654 556666666555444
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.7e-48 Score=434.53 Aligned_cols=366 Identities=34% Similarity=0.541 Sum_probs=313.9
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
....+|+.+.+++ +++.|...||..|+|+|.++++.++.++++||.+|||+|||++++++++..+.. ...+.++|||+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~ 96 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP-KLNKIQALIMV 96 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-TSCSCCEEEEC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-ccCCccEEEEc
Confidence 3467899999988 999999999999999999999999999999999999999999999999877652 22456899999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL 173 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL 173 (2355)
|+++|+.|+.++++++.... ++.+..+.|+.... .....++|+|+||++|..++......+..+++|||||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 97 PTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 175 (400)
T ss_dssp SSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHh
Confidence 99999999999999997766 78888888876532 12345799999999999988887778889999999999999
Q ss_pred cccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHH
Q psy8497 174 INTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEE 253 (2355)
Q Consensus 174 kN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKk 253 (2355)
.+..+...+..++..++...|++++|||++......+..++..+..+..... .....+.+.+..+.. ..+.
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~k~ 246 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEE--------RQKL 246 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCG--------GGHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEech--------hhHH
Confidence 9888888888898888889999999999998888888888887776654432 223334444444332 2345
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
..+..++.....+++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|+
T Consensus 247 ~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 247 HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 56677777777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccCCC
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLV 395 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~eIV 395 (2355)
+++||+++.|+++..|+||+|||||.|++|.+++|+...+...+..+.+.++.++......+
T Consensus 327 ~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 327 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred CCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999888877765544433
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.1e-49 Score=441.92 Aligned_cols=364 Identities=32% Similarity=0.538 Sum_probs=306.0
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
+....|+.+.+.+ +++.|..+||..|+++|.++++.++.++++||++|||+|||++++++++..+.. ...+.++|||+
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~ 115 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-DLKATQALVLA 115 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-TSCSCCEEEEC
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-cCCceeEEEEe
Confidence 3457899999888 999999999999999999999999999999999999999999999999987653 23567899999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR 172 (2355)
|+++|+.|+.+++++++... ++.+..+.|+...... ...++|+|+||++|.+++....+.+..+++|||||||+
T Consensus 116 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 116 PTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp SSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH
T ss_pred ChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH
Confidence 99999999999999997665 6778888877654321 24479999999999999988888888899999999999
Q ss_pred hcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 173 LINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 173 LkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
+.+.++...+..++..++...|+|+||||++......+..++..+..+...........+.+.+..+... ..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 267 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE-------EWK 267 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS-------TTH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH-------HhH
Confidence 9999999999999999999999999999999988888888888888887776666666666666555433 125
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...+..++......++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|
T Consensus 268 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 268 LDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGG
T ss_pred HHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCcc
Confidence 56777888887778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccc
Q psy8497 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFN 391 (2355)
Q Consensus 333 aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe 391 (2355)
.+++||+++.|+++..|+||+|||||.|++|.+++|+...+...+..+...+...+...
T Consensus 348 ~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (414)
T 3eiq_A 348 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEM 406 (414)
T ss_dssp GCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEEC
T ss_pred CCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCcccc
Confidence 99999999999999999999999999999999999999998888888887776665443
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.6e-48 Score=438.50 Aligned_cols=359 Identities=25% Similarity=0.460 Sum_probs=304.2
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC---------
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP--------- 87 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr--------- 87 (2355)
+.++.+|+++.+++ +++.|...||..|+|+|.++++.++.++++|+++|||+|||++|+++++..+....
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 56678899999988 99999999999999999999999999999999999999999999999998876421
Q ss_pred --------CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhh
Q psy8497 88 --------VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLK 155 (2355)
Q Consensus 88 --------~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr 155 (2355)
...+++|||+|+++|+.|+.+.++++.... ++.+..++|+..... ....++|+|+||++|..++...
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 169 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG 169 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC
Confidence 123679999999999999999999987655 788888888864321 1234799999999999999888
Q ss_pred cccCcCceEEEecccchhcccChHHHHHHHHHh--CCC--CceEEEEEeccChhHHHHHHHhccCCeeeccCCCcccccc
Q psy8497 156 YLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ--LPP--MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLG 231 (2355)
Q Consensus 156 ~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~--Lpp--nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~se 231 (2355)
.+.+..+++|||||||++.+.+|...+..++.. ++. ..|++++|||++......+..++..+..+...........
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSS
T ss_pred CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccC
Confidence 778889999999999999999998998888874 332 5799999999998888888888888877666554444455
Q ss_pred ceEEEEeccCCCCCcchhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHH
Q psy8497 232 VKQLVALIPECKNPSLRYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310 (2355)
Q Consensus 232 VrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILEr 310 (2355)
+.+.+..+... .+...|..++... ...++||||++++.++.++++|...++.+..+||+|+..+|..+++.
T Consensus 250 i~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (417)
T 2i4i_A 250 ITQKVVWVEES--------DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321 (417)
T ss_dssp EEEEEEECCGG--------GHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEEeccH--------hHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence 55555554332 3456677777665 45699999999999999999999999999999999999999999999
Q ss_pred HhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhc
Q psy8497 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 311 FRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLK 385 (2355)
|++|+++|||||+++++|||+|++++||+++.|+++..|+||+||+||.|+.|.+++|+...+...+..+...+.
T Consensus 322 f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 322 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp HHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888877777765443
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.2e-47 Score=429.79 Aligned_cols=359 Identities=34% Similarity=0.541 Sum_probs=306.0
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
..|+++.+++ +++.|..+||..|+|+|.++++.++.++++||.+|||+|||++++++++..+.. .....++|||||++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC-CTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc-cCCCeeEEEECCCH
Confidence 5799999888 999999999999999999999999999999999999999999999999877652 23456899999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 101 EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 101 ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
+|+.|+.+.+.++....+++.+..+.|+...... ...++|+|+||++|..++....+.+..+++|||||||++.+
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 166 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhh
Confidence 9999999999999888888999999988653221 12368999999999998888777889999999999999987
Q ss_pred c-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCcc-ccccceEEEEeccCCCCCcchhhhHH
Q psy8497 176 T-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATR-PLLGVKQLVALIPECKNPSLRYVDEE 253 (2355)
Q Consensus 176 ~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~-~~seVrQvVvqVpe~kn~sLt~lsKk 253 (2355)
+ ++...+..++..++...|+|++|||++......+..++..+..+....... ....+.+.+..+.. ..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 238 (391)
T 1xti_A 167 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--------NEKN 238 (391)
T ss_dssp SHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG--------GGHH
T ss_pred ccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc--------hhHH
Confidence 4 677888888888888999999999999988888888888887766554332 22334444443322 2345
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
..|..++......++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|.
T Consensus 239 ~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 318 (391)
T 1xti_A 239 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318 (391)
T ss_dssp HHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCccc
Confidence 66777777777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccC-HHHHHHHHHhhccccc
Q psy8497 334 VDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES-LVKFHSLMGEINLDHA 389 (2355)
Q Consensus 334 VDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdD-VEeIEsLrReLKLKLa 389 (2355)
+++||+++.|+++..|+||+|||||.|+++.+++|+...+ ...+..+...+...+.
T Consensus 319 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (391)
T 1xti_A 319 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIS 375 (391)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCE
T ss_pred CCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChh
Confidence 9999999999999999999999999999999999998764 4556666666655554
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.3e-47 Score=417.50 Aligned_cols=353 Identities=30% Similarity=0.515 Sum_probs=302.9
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG-YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG-RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
..+|+++.+.+ +++.|...||..|+|+|.++++.++.+ +++||.+|||+|||++++++++..+.. ..+.++|||+|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~--~~~~~~lil~P 82 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE--NNGIEAIILTP 82 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS--SSSCCEEEECS
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc--cCCCcEEEEcC
Confidence 45799998888 999999999999999999999999988 689999999999999999998877653 34678999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
+++|+.|+.+.+.++.... ++.+..+.|+..... .....+|+|+||++|...+....+.+..+++|||||||.+.+
T Consensus 83 ~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 83 TRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp CHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhh
Confidence 9999999999999987654 678888888765321 112478999999999998888777788999999999999999
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHH
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkea 255 (2355)
.++...+..++..++...++|++|||++......+..++.....+..... ..+.+.+..+.. ..+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~ 229 (367)
T 1hv8_A 162 MGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNE--------NERFEA 229 (367)
T ss_dssp TTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCG--------GGHHHH
T ss_pred hchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeCh--------HHHHHH
Confidence 99999999999999889999999999999888888877766554443322 133333333322 234556
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
|..++. ....++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|||+|.++
T Consensus 230 l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 230 LCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 666665 3456999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccc
Q psy8497 336 LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHA 389 (2355)
Q Consensus 336 TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLa 389 (2355)
+||+++.|+++..|+||+|||||.|+++.+++++...+...+..+.+.++.++.
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred EEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999887776654
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=7.4e-49 Score=438.89 Aligned_cols=361 Identities=35% Similarity=0.571 Sum_probs=177.8
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
+.+..|+++.+++ +++.|..+||..|+|+|.++++.++.++++||.+|||+|||++++++++..+.. ...++++|||+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~ 96 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLA 96 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-TCCSCCEEEEC
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc-cCCCCCEEEEc
Confidence 4467899999988 999999999999999999999999999999999999999999999999887653 23467899999
Q ss_pred ccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC---CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP---KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 98 PTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq---irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
|+++|+.|+.+.+.++.... ++.+..+.|+...... ...++|+|+||++|...+....+.+..+++|||||+|++.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 99999999999999987665 7888888887653221 1137899999999999888877778899999999999999
Q ss_pred ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHH
Q psy8497 175 NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254 (2355)
Q Consensus 175 N~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKke 254 (2355)
+.++...+..++..+++..|+|++|||++......+..++..+..+...........+.+.+..+... ..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 248 (394)
T 1fuu_A 176 SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE-------EYKYE 248 (394)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------
T ss_pred CCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch-------hhHHH
Confidence 88899999999999999999999999999988888888888877766554433333333333322211 11234
Q ss_pred HHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc
Q psy8497 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV 334 (2355)
Q Consensus 255 aLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV 334 (2355)
.+..++......++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|.+
T Consensus 249 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~ 328 (394)
T 1fuu_A 249 CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccC
Confidence 45555555556799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 335 DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 335 DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
++||+++.|+++..|+||+|||||.|++|.+++|+...+...+..+.+.+...+
T Consensus 329 ~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 382 (394)
T 1fuu_A 329 SLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI 382 (394)
T ss_dssp ------------------------------------------------------
T ss_pred CEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999888887777766555444
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.8e-47 Score=443.55 Aligned_cols=359 Identities=33% Similarity=0.525 Sum_probs=176.4
Q ss_pred ccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEE
Q psy8497 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTII 95 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLI 95 (2355)
..+.+|+.+.+.+ +++.|..+||..|+|+|.++++.++.+ +++|+++|||+|||++|+++++..+.. ....+++||
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~li 167 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLC 167 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT-TSCSCCEEE
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh-cCCCCcEEE
Confidence 3467899999888 999999999999999999999999987 889999999999999999999877653 234558999
Q ss_pred EcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-CCCCcEEEECHHHHHHHHHh-hcccCcCceEEEecccchh
Q psy8497 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIMDEADKL 173 (2355)
Q Consensus 96 LVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-irq~DILVTTPErLLDLLdr-r~LdLSkIdLLIVDEAHRL 173 (2355)
|+|+++|+.|+.++++++....+.+.+.+..++...... ....+|+|+||++|.+++.. ..+.+..+++|||||+|++
T Consensus 168 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred EeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 999999999999999999888888888888887654432 33478999999999888855 4567789999999999999
Q ss_pred cc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhH
Q psy8497 174 IN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252 (2355)
Q Consensus 174 kN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsK 252 (2355)
.+ .++...+..++..++...|+|++|||++.........++..+..+...........+.+.+..+... ..+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~ 320 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR-------DEK 320 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH-------HHH
Confidence 86 5788888888888998999999999999988888888888887776665554444455544443322 123
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCC
Q psy8497 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332 (2355)
Q Consensus 253 keaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLP 332 (2355)
...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|
T Consensus 321 ~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 321 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccc
Confidence 34455555555567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCC------CHhHHHHHhhccCCCCCccEEEEEEcccC-HHHHHHHHHhhc
Q psy8497 333 NVDLVINLEIPH------DAATYLHRMGRAGRYGTRGLVITIVSAES-LVKFHSLMGEIN 385 (2355)
Q Consensus 333 aVDTVIIyDSP~------SPqSYIQRIGRAGRiGQkGkVIVLVSsdD-VEeIEsLrReLK 385 (2355)
++++||++|.|+ +...|+||+|||||.|+.|.+++|+...+ ...+..+...+.
T Consensus 401 ~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~ 460 (479)
T 3fmp_B 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 460 (479)
T ss_dssp ------------------------------------------------------------
T ss_pred cCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhC
Confidence 999999999995 56899999999999999999999997654 444555444333
No 12
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.1e-45 Score=400.65 Aligned_cols=328 Identities=27% Similarity=0.456 Sum_probs=277.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 31 PIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 31 pLLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
.|.+.|..+||..|+|+|.++++.+++++++||.+|||+|||++++++++.. +.++|||+|+++|+.|+.+.+
T Consensus 4 ~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~~q~~~~~ 76 (337)
T 2z0m_A 4 KIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELTRQVASHI 76 (337)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999888753 567999999999999999999
Q ss_pred HHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHH
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs 187 (2355)
+++.... ++.+..+.|+..... ....++|+|+||++|...+....+.+..+++|||||||++.+.++...+..++.
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~ 155 (337)
T 2z0m_A 77 RDIGRYM-DTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILA 155 (337)
T ss_dssp HHHTTTS-CCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhhc-CCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHh
Confidence 9987665 678888888764321 122378999999999998888777788999999999999999999999999999
Q ss_pred hCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCe
Q psy8497 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267 (2355)
Q Consensus 188 ~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgR 267 (2355)
.++...+++++|||++......+..++..+..+... .....+...+..+... ....+..+......+
T Consensus 156 ~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 222 (337)
T 2z0m_A 156 QTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDD----------WRSKVQALRENKDKG 222 (337)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSS----------SHHHHHHHHTCCCSS
T ss_pred hCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChH----------HHHHHHHHHhCCCCc
Confidence 999899999999999998888888888776655332 1222333333333322 112335555566779
Q ss_pred EEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHh
Q psy8497 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAA 347 (2355)
Q Consensus 268 VLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPq 347 (2355)
+||||++++.++.+++.|. .+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||++++|+++.
T Consensus 223 ~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~ 298 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLR 298 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHH
T ss_pred EEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHH
Confidence 9999999999999998886 578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 348 TYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 348 SYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
.|+||+|||||.|+++.+++|+. .+...++.+.+.+
T Consensus 299 ~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 299 TYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp HHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred HhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 99999999999999999999999 7777777775543
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.6e-45 Score=434.02 Aligned_cols=357 Identities=24% Similarity=0.380 Sum_probs=288.1
Q ss_pred cHH-HHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEEccCCchHHHHHHHHHHHHHHhcC---CCCCeEEEEcccHHH
Q psy8497 29 EKP-IRQGLQENGFVKESPIQMAAFPYVL--NGYDAIVQSKSGTGKSIVFVVAALNKLIKLP---VQQPQTIILAPTREI 102 (2355)
Q Consensus 29 Lkp-LLK~Lqa~GF~eLRPYQeEALn~LL--SGRNVILAAPTGSGKTLVALIAILerL~ekr---~qggRVLILVPTRAL 102 (2355)
+.+ +++.|...||..|+|+|.++++.++ .++++|+++|||+|||++|+++++..+.... ....++|||+|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 555 9999999999999999999999999 6789999999999999999999999887533 224589999999999
Q ss_pred HHHHHHHHHHHhcc---cCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhh-cccCcCceEEEecccchh
Q psy8497 103 AVQITDVVRSVGAH---VKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLK-YLNMDSVRLFIMDEADKL 173 (2355)
Q Consensus 103 AqQ~anwLREFgk~---APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr-~LdLSkIdLLIVDEAHRL 173 (2355)
+.|+.+.++++... .+.+.+..+.|+...... ...++|||+||++|.+++... ...+..+++|||||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999997542 335667888887653321 124789999999998887654 335678999999999999
Q ss_pred cccChHHHHHHHHHhCC-------CCceEEEEEeccChhHHHHHHHhccCCeeeccCCC----ccccccceEEEEeccCC
Q psy8497 174 INTGFVEDITWIYSQLP-------PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDA----TRPLLGVKQLVALIPEC 242 (2355)
Q Consensus 174 kN~GF~SrLeeILs~Lp-------pnrQILLLSATLS~EILElLkKfLrdPvIIrVese----e~~~seVrQvVvqVpe~ 242 (2355)
.+++|...+..++..++ ...|+|+||||++..+...+..++..+..+..... ......+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 99999888888877652 36799999999998888888777776655443221 11222333444333322
Q ss_pred CCCcchhhhHHHHHHHHHhc-CCCCeEEEEEcccccHHHHHHHHHhc---CCccEEeeCCCCHHHHHHHHHHHhCCCccE
Q psy8497 243 KNPSLRYVDEEKKLVQLLSQ-TPFNQCVIFSNYQLRPEVICENLANA---NFGAEYLSGAQDQKARLASLDSFKRGKVRI 318 (2355)
Q Consensus 243 kn~sLt~lsKkeaLLqLLer-l~kgRVLVFSQTRKmAEiLADyLrEr---GIKVarLHGgMSqEERqeILErFRSGEIdV 318 (2355)
..........+...+.. ....++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+++|
T Consensus 319 ---~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 319 ---ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp ---THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred ---HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 11112223334444433 45679999999999999999999987 899999999999999999999999999999
Q ss_pred EEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 319 LVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 319 LVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
||||+++++|||+|++++||+++.|.++..|+||+|||||.|+.|.+++|+...+...+..+.......+
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~ 465 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVI 465 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCC
T ss_pred EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999888877655544
No 14
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.6e-45 Score=438.71 Aligned_cols=365 Identities=24% Similarity=0.376 Sum_probs=293.7
Q ss_pred ccCcccCC----cHH-HHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEEccCCchHHHHHHHHHHHHHHhcC---CCC
Q psy8497 21 LFENDVLI----EKP-IRQGLQENGFVKESPIQMAAFPYVL--NGYDAIVQSKSGTGKSIVFVVAALNKLIKLP---VQQ 90 (2355)
Q Consensus 21 V~SFEeLl----Lkp-LLK~Lqa~GF~eLRPYQeEALn~LL--SGRNVILAAPTGSGKTLVALIAILerL~ekr---~qg 90 (2355)
..+|+++. +.+ |++.|..+||..|+|+|.++++.++ .++++|+++|||+|||++|+++++..+.... ...
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~ 95 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYM 95 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTS
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCC
Confidence 34455443 555 9999999999999999999999999 6789999999999999999999999887532 234
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhc---ccCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhh-cccCcC
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGA---HVKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLK-YLNMDS 161 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk---~APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr-~LdLSk 161 (2355)
.++|||+|+++|+.|+.+.++++.. ..+.+.+..+.|+...... ...++|||+||++|.+++... ...+..
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 175 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 175 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccccc
Confidence 6899999999999999999999864 3345677888887653321 123789999999999888764 445788
Q ss_pred ceEEEecccchhcccChHHHHHHHHHhCC-------CCceEEEEEeccChhHHHHHHHhccCCeeeccCCC----ccccc
Q psy8497 162 VRLFIMDEADKLINTGFVEDITWIYSQLP-------PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDA----TRPLL 230 (2355)
Q Consensus 162 IdLLIVDEAHRLkN~GF~SrLeeILs~Lp-------pnrQILLLSATLS~EILElLkKfLrdPvIIrVese----e~~~s 230 (2355)
+++|||||||++.+++|...+..++..++ ...|+|+||||++..+...+..++..+..+..... .....
T Consensus 176 ~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (579)
T 3sqw_A 176 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 255 (579)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT
T ss_pred CCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccccc
Confidence 99999999999999999888888877653 26799999999998888888887777655443321 12222
Q ss_pred cceEEEEeccCCCCCcchhhhHHHHHHHHHhc-CCCCeEEEEEcccccHHHHHHHHHhc---CCccEEeeCCCCHHHHHH
Q psy8497 231 GVKQLVALIPECKNPSLRYVDEEKKLVQLLSQ-TPFNQCVIFSNYQLRPEVICENLANA---NFGAEYLSGAQDQKARLA 306 (2355)
Q Consensus 231 eVrQvVvqVpe~kn~sLt~lsKkeaLLqLLer-l~kgRVLVFSQTRKmAEiLADyLrEr---GIKVarLHGgMSqEERqe 306 (2355)
.+.+.+...... ..........+...+.. ....++||||+++..++.++..|... ++.+..+||+|++.+|..
T Consensus 256 ~i~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 256 RIDQSVVISEKF---ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp TEEEEEEEESST---THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred ccceEEEEecch---hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 334444333322 11122233444444443 45579999999999999999999987 899999999999999999
Q ss_pred HHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcc
Q psy8497 307 SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINL 386 (2355)
Q Consensus 307 ILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKL 386 (2355)
+++.|++|+++|||||+++++|||+|.+++||+++.|.++..|+||+|||||.|+.+.+++|+...+...+..+......
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888776555
Q ss_pred cc
Q psy8497 387 DH 388 (2355)
Q Consensus 387 KL 388 (2355)
.+
T Consensus 413 ~~ 414 (579)
T 3sqw_A 413 VI 414 (579)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-44 Score=424.75 Aligned_cols=360 Identities=29% Similarity=0.468 Sum_probs=255.2
Q ss_pred cccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 20 VLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 20 kV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
....|....+.+ +++.|...|+..|+++|.++++.++++ +++||++|||+|||++|+++++..+.. ...++++|||
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~-~~~~~~vLvl 195 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA-SVPKPQAICL 195 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT-TCCSCCEEEE
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh-CCCCceEEEE
Confidence 344555555666 889999999999999999999999998 899999999999999999999988763 2345689999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc-
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN- 175 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN- 175 (2355)
+|+++|+.|+.+++++++... .+.+....++.........++|+|+||++|...+....+.+..+++|||||+|++.+
T Consensus 196 ~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~ 274 (508)
T 3fho_A 196 APSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQ 274 (508)
T ss_dssp CSCHHHHHHHHHHHHHHSTTS-SCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC
T ss_pred ECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhccc
Confidence 999999999999999997665 556666666555444445689999999999999888887889999999999999887
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHH
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkea 255 (2355)
.++...+..++..++...|+|+||||++.........++..+..+...........+.+.+..+... ..+...
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~k~~~ 347 (508)
T 3fho_A 275 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE-------EHKYNV 347 (508)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C-------HHHHHH
T ss_pred CCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch-------HHHHHH
Confidence 5688889999999999999999999999888888888888877776665554444444444433222 234456
Q ss_pred HHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 256 LLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
+..++......++||||+++..++.++..|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 348 l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~ 427 (508)
T 3fho_A 348 LVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVN 427 (508)
T ss_dssp HHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCC
T ss_pred HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCC
Confidence 77777766778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC------CCHhHHHHHhhccCCCCCccEEEEEEcc-cCHHHHHHHHHhhcccc
Q psy8497 336 LVINLEIP------HDAATYLHRMGRAGRYGTRGLVITIVSA-ESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 336 TVIIyDSP------~SPqSYIQRIGRAGRiGQkGkVIVLVSs-dDVEeIEsLrReLKLKL 388 (2355)
+||+++.| .++..|+||+|||||.|+.|.+++|+.. .+...+..+...+...+
T Consensus 428 ~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i 487 (508)
T 3fho_A 428 LVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPI 487 (508)
T ss_dssp EEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCC
T ss_pred EEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCc
Confidence 99999999 7899999999999999999999999974 34445555555544433
No 16
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.5e-42 Score=383.94 Aligned_cols=330 Identities=19% Similarity=0.279 Sum_probs=249.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
+|+|||.+++++++.+ ++||++|||+|||++++++++..+. ....++|||||+++|+.||.+.+.++... +...+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT---KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH---HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHHHhCc-chhhe
Confidence 7999999999999999 9999999999999999988887765 34678999999999999999999998632 35688
Q ss_pred EEEECCccccCC---CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 123 DYFIGGTQVERP---KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 123 VvytGGkq~rkq---irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.|+...... ...++|+|+||+.|...+....+.+..|++|||||||++.+......+...+.......++|+||
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lT 163 (494)
T 1wp9_A 84 VALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLT 163 (494)
T ss_dssp EEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEE
T ss_pred EEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEe
Confidence 888887654311 12378999999999998887777889999999999999987766666666666667788999999
Q ss_pred eccChhHH--HHHHHhccCC-eeeccCCCccc---c--ccceEEEEeccCC-----------------------------
Q psy8497 200 ATYSHDNL--ATLQKYMVDP-LLIRPEDATRP---L--LGVKQLVALIPEC----------------------------- 242 (2355)
Q Consensus 200 ATLS~EIL--ElLkKfLrdP-vIIrVesee~~---~--seVrQvVvqVpe~----------------------------- 242 (2355)
|||..... ..+..++... ..+........ . ..........+..
T Consensus 164 aTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
T 1wp9_A 164 ASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS 243 (494)
T ss_dssp SCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 99984322 2222222211 11111000000 0 0000000000000
Q ss_pred -----------------------CCCc---------------------------c-------------------------
Q psy8497 243 -----------------------KNPS---------------------------L------------------------- 247 (2355)
Q Consensus 243 -----------------------kn~s---------------------------L------------------------- 247 (2355)
...+ .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (494)
T 1wp9_A 244 PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDK 323 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSH
T ss_pred CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhH
Confidence 0000 0
Q ss_pred ----------------hhhhHHHHHHHHHhc----CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeC--------CC
Q psy8497 248 ----------------RYVDEEKKLVQLLSQ----TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSG--------AQ 299 (2355)
Q Consensus 248 ----------------t~lsKkeaLLqLLer----l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHG--------gM 299 (2355)
....+...|..++.. ....++||||+++..++.|++.|...++.+..+|| +|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~ 403 (494)
T 1wp9_A 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGL 403 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC------
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccC
Confidence 011133445555554 46679999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHH
Q psy8497 300 DQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFH 378 (2355)
Q Consensus 300 SqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIE 378 (2355)
+..+|..+++.|++|.++|||||+++++|||+|.+++||++|+||++..|+||+|||||.|+ +.+++|+...+.+...
T Consensus 404 ~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee~~ 481 (494)
T 1wp9_A 404 SQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEAY 481 (494)
T ss_dssp -CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHHHH
T ss_pred CHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 9999999888766543
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7.8e-41 Score=408.95 Aligned_cols=344 Identities=17% Similarity=0.229 Sum_probs=270.4
Q ss_pred ccccCcccCCcHH-HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 19 DVLFENDVLIEKP-IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
...+.+..+.+.+ +.+.|.. +||..|+|+|.++++.++.++++|+.+|||+|||++|+++++. ..+.+|||
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~-------~~g~~lVi 90 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC-------SDGFTLVI 90 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT-------SSSEEEEE
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH-------cCCcEEEE
Confidence 3455566677777 9999998 7999999999999999999999999999999999999999863 25689999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----------CCCCCcEEEECHHHHHH---HHH--hhcccCcC
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----------PKRPVQIVVGSPGRIKQ---MIK--LKYLNMDS 161 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----------qirq~DILVTTPErLLD---LLd--rr~LdLSk 161 (2355)
+|+++|+.|+.+.+.++ ++.+..+.|+..... ....++|||+||++|.. ++. .....+..
T Consensus 91 sP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~ 165 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARR 165 (591)
T ss_dssp CSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTC
T ss_pred eCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccC
Confidence 99999999999999987 567778887754321 23458999999998742 221 12334678
Q ss_pred ceEEEecccchhcccC--hHHHHHH--HHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEE
Q psy8497 162 VRLFIMDEADKLINTG--FVEDITW--IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237 (2355)
Q Consensus 162 IdLLIVDEAHRLkN~G--F~SrLee--ILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVv 237 (2355)
+.+|||||||++.+++ |...+.. ++....+..++|+||||++..+...+..++..+..+..... .....+...+.
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~ 244 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-FNRPNLYYEVR 244 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC-CCCTTEEEEEE
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC-CCCcccEEEEE
Confidence 8999999999999876 4333332 33334457899999999999888877777654322211111 11122222222
Q ss_pred eccCCCCCcchhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCc
Q psy8497 238 LIPECKNPSLRYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316 (2355)
Q Consensus 238 qVpe~kn~sLt~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEI 316 (2355)
.... ........|+.++... ...++||||++++.++.|+..|...|+.+..+||+|+..+|..+++.|+.|++
T Consensus 245 ~~~~------~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~ 318 (591)
T 2v1x_A 245 QKPS------NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEI 318 (591)
T ss_dssp ECCS------SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred eCCC------cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 1111 1123445666666543 55799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHH
Q psy8497 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 317 dVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLr 381 (2355)
+|||||+++++|||+|++++||++++|.++..|+|++|||||.|+++.+++|+...+...+..++
T Consensus 319 ~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 319 QVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp SEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred eEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877766665554
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.6e-41 Score=404.20 Aligned_cols=335 Identities=20% Similarity=0.303 Sum_probs=270.0
Q ss_pred cCcccCCcHH-HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 22 FENDVLIEKP-IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
..|+.+.+.+ +++.|.. +||..|+|+|.++++.++.++++||.+|||+|||++|+++++.. .+.+|||+|+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-------~g~~lvi~P~ 74 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-------NGLTVVVSPL 74 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-------SSEEEEECSC
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-------CCCEEEECCh
Confidence 4789999988 9999998 89999999999999999999999999999999999999888732 4679999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
++|+.|+.+.+.++ ++.+..+.++..... ....++|+|+||++|........+....+.+|||||||
T Consensus 75 ~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH 149 (523)
T 1oyw_A 75 ISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (523)
T ss_dssp HHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred HHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcc
Confidence 99999999999886 566777777654221 11237899999999864333334455789999999999
Q ss_pred hhcccC--hH---HHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhc--cCCeeeccCCCccccccceEEEEeccCCCC
Q psy8497 172 KLINTG--FV---EDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM--VDPLLIRPEDATRPLLGVKQLVALIPECKN 244 (2355)
Q Consensus 172 RLkN~G--F~---SrLeeILs~LppnrQILLLSATLS~EILElLkKfL--rdPvIIrVesee~~~seVrQvVvqVpe~kn 244 (2355)
++.+++ |. ..+..+...+ +..++|+||||+.......+...+ ..+.++.... . ...+...+ ...
T Consensus 150 ~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~--r~~l~~~v--~~~--- 220 (523)
T 1oyw_A 150 CISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF-D--RPNIRYML--MEK--- 220 (523)
T ss_dssp GGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC-C--CTTEEEEE--EEC---
T ss_pred ccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC-C--CCceEEEE--EeC---
Confidence 999876 43 3334445555 468899999999988776665544 3343332211 1 11222211 111
Q ss_pred CcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc
Q psy8497 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324 (2355)
Q Consensus 245 ~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA 324 (2355)
......|+.++......++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|+++|||||++
T Consensus 221 -----~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a 295 (523)
T 1oyw_A 221 -----FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA 295 (523)
T ss_dssp -----SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT
T ss_pred -----CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 123456777777666679999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 325 LGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+++|||+|++++||+++.|+++..|+|++|||||.|.++.+++|+...+...+..++.
T Consensus 296 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 296 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred hhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998877777666654
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.2e-41 Score=393.33 Aligned_cols=335 Identities=18% Similarity=0.244 Sum_probs=199.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCC-CCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 40 GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV-QQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~-qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+..+|+|||.+++++++.++++||++|||+|||++|+++++..+..... .++++|||||+++|+.||.+.+.+++...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 82 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ- 82 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-
Confidence 3458999999999999999999999999999999999999988875321 26789999999999999999999997765
Q ss_pred CcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcc-cCcCceEEEecccchhcccChHHHHH-HHHHh-C--
Q psy8497 119 NLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYL-NMDSVRLFIMDEADKLINTGFVEDIT-WIYSQ-L-- 189 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~L-dLSkIdLLIVDEAHRLkN~GF~SrLe-eILs~-L-- 189 (2355)
++.+..++|+....... ..++|+|+||++|...+....+ .+..+++|||||||++.+.+.+..+. .++.. +
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc
Confidence 78899999987544321 2378999999999999988776 78899999999999999877544442 22221 1
Q ss_pred -CCCceEEEEEeccChh----------HHHHHHHhccCCeeeccCCCcc----ccccceEEEEeccCCCC----------
Q psy8497 190 -PPMKQMLVVSATYSHD----------NLATLQKYMVDPLLIRPEDATR----PLLGVKQLVALIPECKN---------- 244 (2355)
Q Consensus 190 -ppnrQILLLSATLS~E----------ILElLkKfLrdPvIIrVesee~----~~seVrQvVvqVpe~kn---------- 244 (2355)
.+..++|+||||+... ....+...+....+........ ...........+.....
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 3568999999999542 1111112222111111111000 00000000000000000
Q ss_pred -------------------------Cc------c----------------------------------------------
Q psy8497 245 -------------------------PS------L---------------------------------------------- 247 (2355)
Q Consensus 245 -------------------------~s------L---------------------------------------------- 247 (2355)
.. .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 00 0
Q ss_pred ----------------------------------------------hhhhHHHHHHHHHhc----CCCCeEEEEEccccc
Q psy8497 248 ----------------------------------------------RYVDEEKKLVQLLSQ----TPFNQCVIFSNYQLR 277 (2355)
Q Consensus 248 ----------------------------------------------t~lsKkeaLLqLLer----l~kgRVLVFSQTRKm 277 (2355)
....+...|..+|.. ....++||||+++.+
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 001133344444432 456799999999999
Q ss_pred HHHHHHHHHhc------------CCccEEeeCCCCHHHHHHHHHHHhC-CCccEEEEecccccccCCCCccEEEEecCCC
Q psy8497 278 PEVICENLANA------------NFGAEYLSGAQDQKARLASLDSFKR-GKVRILVTTDLAARGIDAANVDLVINLEIPH 344 (2355)
Q Consensus 278 AEiLADyLrEr------------GIKVarLHGgMSqEERqeILErFRS-GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~ 344 (2355)
++.|+++|... |..+..+||+|+..+|..+++.|++ |.++|||||+++++|||+|+|++||+||+|+
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~ 482 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 482 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCS
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCC
Confidence 99999999875 5566677888999999999999999 9999999999999999999999999999999
Q ss_pred CHhHHHHHhhccCCCCCccEEEEEEcccCHHHH
Q psy8497 345 DAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377 (2355)
Q Consensus 345 SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeI 377 (2355)
|+..|+||+|| ||. .++.+++|+...+....
T Consensus 483 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 483 NVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp CHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred CHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 99999999999 997 88999999987766554
No 20
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.7e-41 Score=389.32 Aligned_cols=335 Identities=16% Similarity=0.227 Sum_probs=225.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
+|+|||.+++++++.++++||++|||+|||++|+++++..+.... ..++++|||||+++|+.||.+.+.+++... ++.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~ 82 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL-GYN 82 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-CcE
Confidence 799999999999999999999999999999999999998887522 226789999999999999999999997766 788
Q ss_pred EEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcc-cCcCceEEEecccchhcccChHHHH-HHHHHhC-----C
Q psy8497 122 VDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYL-NMDSVRLFIMDEADKLINTGFVEDI-TWIYSQL-----P 190 (2355)
Q Consensus 122 VVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~L-dLSkIdLLIVDEAHRLkN~GF~SrL-eeILs~L-----p 190 (2355)
+..++|+....... ..++|+|+||++|...+....+ .+..+++|||||||++.+.+.+..+ ..++... .
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccC
Confidence 99999998654331 2378999999999999887766 6888999999999999877533332 2333322 2
Q ss_pred CCceEEEEEeccChhH-------HH---HHHHhccCCeeeccCCCc----cccccceEEEEeccCCCC------------
Q psy8497 191 PMKQMLVVSATYSHDN-------LA---TLQKYMVDPLLIRPEDAT----RPLLGVKQLVALIPECKN------------ 244 (2355)
Q Consensus 191 pnrQILLLSATLS~EI-------LE---lLkKfLrdPvIIrVesee----~~~seVrQvVvqVpe~kn------------ 244 (2355)
+..++|+||||+.... .. .+...+....+....... ............+.....
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMK 242 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHH
Confidence 4579999999996421 11 122222222222111100 000000000110100000
Q ss_pred -------------------------C-----c------------------------------------------------
Q psy8497 245 -------------------------P-----S------------------------------------------------ 246 (2355)
Q Consensus 245 -------------------------~-----s------------------------------------------------ 246 (2355)
. .
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 322 (555)
T 3tbk_A 243 ETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQM 322 (555)
T ss_dssp HHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 0 0
Q ss_pred --------------------------------------------chhhhHHHHHHHHHhc----CCCCeEEEEEcccccH
Q psy8497 247 --------------------------------------------LRYVDEEKKLVQLLSQ----TPFNQCVIFSNYQLRP 278 (2355)
Q Consensus 247 --------------------------------------------Lt~lsKkeaLLqLLer----l~kgRVLVFSQTRKmA 278 (2355)
.....+...|..+|.. ....++||||+++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~ 402 (555)
T 3tbk_A 323 TDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALV 402 (555)
T ss_dssp HHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHH
Confidence 0001223344444432 4567999999999999
Q ss_pred HHHHHHHHhcC------------CccEEeeCCCCHHHHHHHHHHHhC-CCccEEEEecccccccCCCCccEEEEecCCCC
Q psy8497 279 EVICENLANAN------------FGAEYLSGAQDQKARLASLDSFKR-GKVRILVTTDLAARGIDAANVDLVINLEIPHD 345 (2355)
Q Consensus 279 EiLADyLrErG------------IKVarLHGgMSqEERqeILErFRS-GEIdVLVSTSALGEGLDLPaVDTVIIyDSP~S 345 (2355)
+.|+++|...+ ..+..+||+|+..+|..+++.|++ |.++|||||+++++|||+|.|++||+||+|+|
T Consensus 403 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s 482 (555)
T 3tbk_A 403 DALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGN 482 (555)
T ss_dssp HHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSS
T ss_pred HHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCC
Confidence 99999999863 345556679999999999999999 99999999999999999999999999999999
Q ss_pred HhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 346 AATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
+..|+||+|| ||. ..+.+++|+...+......+
T Consensus 483 ~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 483 VIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999 897 89999999988776655433
No 21
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=8.3e-41 Score=382.92 Aligned_cols=321 Identities=19% Similarity=0.245 Sum_probs=250.0
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+.+.+.. +|+ +|+|+|.++++.++.++++|+++|||+|||++++++++..+. .++++|||+|+++|+.|+.+.+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHHHHHHH
Confidence 5555555 466 899999999999999999999999999999999888876653 4678999999999999999999
Q ss_pred HHHhcccCCcEEEEEECCccccC-------C-CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc-------
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER-------P-KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN------- 175 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk-------q-irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN------- 175 (2355)
++++. .++++..++|+..... . ...++|+|+||++|.+++.. +.+..+++|||||||++..
T Consensus 85 ~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~ 160 (414)
T 3oiy_A 85 QKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 160 (414)
T ss_dssp HHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHH
T ss_pred HHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhh
Confidence 99876 4889999999876411 1 12379999999999877764 5667899999999997653
Q ss_pred ----cChHHH-HHHHHHhCC-----------CCceEEEEEec-cChhHHHH-HHHhccCCeeeccCCCccccccceEEEE
Q psy8497 176 ----TGFVED-ITWIYSQLP-----------PMKQMLVVSAT-YSHDNLAT-LQKYMVDPLLIRPEDATRPLLGVKQLVA 237 (2355)
Q Consensus 176 ----~GF~Sr-LeeILs~Lp-----------pnrQILLLSAT-LS~EILEl-LkKfLrdPvIIrVesee~~~seVrQvVv 237 (2355)
.+|... +..++..++ ...|+|++||| ++...... ...++. +.+.........+.+.+.
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~ 236 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRI 236 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEE
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheee
Confidence 556566 677777765 78899999999 44333322 222222 122222222333444443
Q ss_pred eccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccE-EeeCCCCHHHHHHHHHHHhCCCc
Q psy8497 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAE-YLSGAQDQKARLASLDSFKRGKV 316 (2355)
Q Consensus 238 qVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVa-rLHGgMSqEERqeILErFRSGEI 316 (2355)
.. .+...|..++... ..++||||+++..++.++..|...++.+. .+||. +|. ++.|++|++
T Consensus 237 ~~-----------~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~ 298 (414)
T 3oiy_A 237 SS-----------RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKI 298 (414)
T ss_dssp SS-----------CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSC
T ss_pred cc-----------CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCC
Confidence 32 1334455555552 37999999999999999999999999998 89984 444 999999999
Q ss_pred cEEEE----ecccccccCCCC-ccEEEEecCC--CCHhHHHHHhhccCCCC----CccEEEEEEcccCHHHHHHHHHhhc
Q psy8497 317 RILVT----TDLAARGIDAAN-VDLVINLEIP--HDAATYLHRMGRAGRYG----TRGLVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 317 dVLVS----TSALGEGLDLPa-VDTVIIyDSP--~SPqSYIQRIGRAGRiG----QkGkVIVLVSsdDVEeIEsLrReLK 385 (2355)
+|||| |+++++|||+|+ +++||+++.| .++..|+||+|||||.| ..|.+++|+ .+...+..+.+.+.
T Consensus 299 ~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 299 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp SEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred eEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99999 999999999999 9999999999 99999999999999987 478888888 56666666655544
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.2e-39 Score=396.24 Aligned_cols=345 Identities=19% Similarity=0.232 Sum_probs=218.0
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-CCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 33 RQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-VQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 33 LK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-~qggRVLILVPTRALAqQ~anwLR 111 (2355)
...+..+|+..|++||.+++++++.++++||++|||+|||++|+++++..+.... ...+++|||+|+++|+.||.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999999999999999998876432 223789999999999999999999
Q ss_pred HHhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcc-cCcCceEEEecccchhcccChHHHHH-HH
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYL-NMDSVRLFIMDEADKLINTGFVEDIT-WI 185 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~L-dLSkIdLLIVDEAHRLkN~GF~SrLe-eI 185 (2355)
+++... ++.+..++|+....... ..++|+|+||++|.+.+....+ .+..|++|||||||++.+...+..+. .+
T Consensus 83 ~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 83 KYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHTTTT-TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHhccC-CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 997654 78899999987543321 2479999999999999887766 68889999999999998665333332 22
Q ss_pred HHh-----CCCCceEEEEEeccC-------hhHHHHHHHhc---cCCeeeccCC-------------------Cccccc-
Q psy8497 186 YSQ-----LPPMKQMLVVSATYS-------HDNLATLQKYM---VDPLLIRPED-------------------ATRPLL- 230 (2355)
Q Consensus 186 Ls~-----LppnrQILLLSATLS-------~EILElLkKfL---rdPvIIrVes-------------------ee~~~s- 230 (2355)
+.. ..+..++|+||||+. ......+...+ ....+..... ......
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 222 245689999999997 33333332221 1111100000 000000
Q ss_pred ----------cceEEE------------------------------------EeccC-----------------------
Q psy8497 231 ----------GVKQLV------------------------------------ALIPE----------------------- 241 (2355)
Q Consensus 231 ----------eVrQvV------------------------------------vqVpe----------------------- 241 (2355)
.+..+. ...+.
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence 000000 00000
Q ss_pred --------------------------CCCCcc-----------------------hhhhHHHHHHHHHhcC----CCCeE
Q psy8497 242 --------------------------CKNPSL-----------------------RYVDEEKKLVQLLSQT----PFNQC 268 (2355)
Q Consensus 242 --------------------------~kn~sL-----------------------t~lsKkeaLLqLLerl----~kgRV 268 (2355)
...... ....+...|..++... ...++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 000000 0112344455555443 55799
Q ss_pred EEEEcccccHHHHHHHHHhcC----CccEEe--------eCCCCHHHHHHHHHHHhC-CCccEEEEecccccccCCCCcc
Q psy8497 269 VIFSNYQLRPEVICENLANAN----FGAEYL--------SGAQDQKARLASLDSFKR-GKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 269 LVFSQTRKmAEiLADyLrErG----IKVarL--------HGgMSqEERqeILErFRS-GEIdVLVSTSALGEGLDLPaVD 335 (2355)
||||+++..++.|+++|...+ +.+..+ ||+|+..+|..+++.|++ |+++|||||+++++|||+|+++
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999988 888888 559999999999999998 9999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHH
Q psy8497 336 LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380 (2355)
Q Consensus 336 TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsL 380 (2355)
+||+||+|+++..|+||+|| ||. +.+.+++++...+....+.+
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 99999999999999999999 997 78999999987766554433
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-39 Score=416.04 Aligned_cols=405 Identities=15% Similarity=0.122 Sum_probs=286.8
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
.|..+.+.+ +...+...+...|+++|.++++.+..++++||++|||+|||++|+++++..+. .++++|||+|+++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~----~g~rvlvl~Ptra 238 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----NKQRVIYTSPIKA 238 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH----TTCEEEEEESSHH
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh----cCCeEEEEcCcHH
Confidence 455555555 44455555666899999999999999999999999999999999999998876 3678999999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHH
Q psy8497 102 IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVED 181 (2355)
Q Consensus 102 LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~Sr 181 (2355)
|+.|+++.+.+++. .+.+++|+.... ..++|+|+||++|.+++......+..+++|||||||++.+.++...
T Consensus 239 La~Q~~~~l~~~~~-----~VglltGd~~~~---~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~ 310 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG-----DVGLMTGDITIN---PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVV 310 (1108)
T ss_dssp HHHHHHHHHHHHTS-----SEEEECSSCBCC---CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHH
T ss_pred HHHHHHHHHHHHhC-----CccEEeCccccC---CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHH
Confidence 99999999999864 467788887643 3478999999999999988777788999999999999999889999
Q ss_pred HHHHHHhCCCCceEEEEEeccChh--HHHHHHHhccCCeeeccCCCccccccceEEEEe---------ccCCCCC-----
Q psy8497 182 ITWIYSQLPPMKQMLVVSATYSHD--NLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL---------IPECKNP----- 245 (2355)
Q Consensus 182 LeeILs~LppnrQILLLSATLS~E--ILElLkKfLrdPvIIrVesee~~~seVrQvVvq---------Vpe~kn~----- 245 (2355)
+..++..++...|+|+||||++.. ....+...+..+..+....... ..+...+.. +......
T Consensus 311 ~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~ 388 (1108)
T 3l9o_A 311 WEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENF 388 (1108)
T ss_dssp HHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEETTTEECHHHH
T ss_pred HHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeeccccchhhhhH
Confidence 999999999999999999998764 2344555444444333222111 111221111 0000000
Q ss_pred ---------------------------------cchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCc-
Q psy8497 246 ---------------------------------SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFG- 291 (2355)
Q Consensus 246 ---------------------------------sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIK- 291 (2355)
..........++..+......++||||++++.++.++..|...++.
T Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~ 468 (1108)
T 3l9o_A 389 QKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNS 468 (1108)
T ss_dssp HHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHC
T ss_pred HHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCC
Confidence 0000223344555555566679999999999999999998654332
Q ss_pred --------------------------------------cEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Q psy8497 292 --------------------------------------AEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAAN 333 (2355)
Q Consensus 292 --------------------------------------VarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPa 333 (2355)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+
T Consensus 469 ~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~ 548 (1108)
T 3l9o_A 469 DDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPA 548 (1108)
T ss_dssp C----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCC
Confidence 789999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCC--------CHhHHHHHhhccCCCC--CccEEEEEEccc-CHHHHHHHHHhhccccccccCCCccchhhh
Q psy8497 334 VDLVINLEIPH--------DAATYLHRMGRAGRYG--TRGLVITIVSAE-SLVKFHSLMGEINLDHAFNVGLVPDNLTGD 402 (2355)
Q Consensus 334 VDTVIIyDSP~--------SPqSYIQRIGRAGRiG--QkGkVIVLVSsd-DVEeIEsLrReLKLKLaLe~eIVPkgLlKe 402 (2355)
+++||.++.++ ++.+|+||+|||||.| ..|.+|+++... ....+..+.......+.-.-.....+++..
T Consensus 549 v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ilnl 628 (1108)
T 3l9o_A 549 KTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 628 (1108)
T ss_dssp CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_pred ceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHHH
Confidence 99999766543 7778999999999999 678888888665 444455554322211111111111222222
Q ss_pred hhhHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHhhcC
Q psy8497 403 QINWTQRVQTLLAKPLDQAQEREDVEQTAEESSKVENTK 441 (2355)
Q Consensus 403 qiDw~~~LERILKnPLdeeqErEELEQLeeElkKIEneL 441 (2355)
........+.++...+.+.+....+..+..+..++++.+
T Consensus 629 l~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~ 667 (1108)
T 3l9o_A 629 MRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDF 667 (1108)
T ss_dssp HHSTTCCHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 211111235566666666665555555555555555433
No 24
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-38 Score=390.82 Aligned_cols=339 Identities=18% Similarity=0.241 Sum_probs=260.8
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPY-VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~-LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
..+|+++.+++ +.+.+...||..|+++|.++++. +..++++||++|||+|||+++.++++..+.. .++++|||+|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~il~i~P 83 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK---NGGKAIYVTP 83 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH---SCSEEEEECS
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH---CCCeEEEEeC
Confidence 36799999888 99999999999999999999999 6788999999999999999999999988763 3679999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+++|+.|+.+.++.+. .. ++.+..++|+...... ....+|+|+||++|..++......+..+++|||||+|.+.+..
T Consensus 84 ~r~La~q~~~~~~~~~-~~-g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 84 LRALTNEKYLTFKDWE-LI-GFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp CHHHHHHHHHHHGGGG-GG-TCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred cHHHHHHHHHHHHHhh-cC-CCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 9999999999986553 23 7888888987654321 2358999999999998888766567899999999999998877
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEE-----------EeccCCCCCc
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV-----------ALIPECKNPS 246 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvV-----------vqVpe~kn~s 246 (2355)
+...+..++..++ ..|+|+||||+++. ..+..++..+. +...... ..+...+ ..+.......
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~~r~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISNY--KQIAKWLGAEP-VATNWRP---VPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTTH--HHHHHHHTCEE-EECCCCS---SCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCCH--HHHHHHhCCCc-cCCCCCC---CCceEEEEecCCcccceeeecCcchhhh
Confidence 8888888887776 78999999999742 34444554322 1111111 1111111 1111100000
Q ss_pred ch-hhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC------------------------------------
Q psy8497 247 LR-YVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN------------------------------------ 289 (2355)
Q Consensus 247 Lt-~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG------------------------------------ 289 (2355)
+. .......+..++. ..+++||||++++.++.++..|....
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 312 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLIS 312 (715)
T ss_dssp EESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHh
Confidence 00 1123344444443 34799999999999999999998642
Q ss_pred CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ec-------CCCCHhHHHHHhhccCC
Q psy8497 290 FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LE-------IPHDAATYLHRMGRAGR 358 (2355)
Q Consensus 290 IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yD-------SP~SPqSYIQRIGRAGR 358 (2355)
..+.++||+|+..+|..+++.|++|.++|||||+++++|||+|++++||. || .|.++.+|+||+|||||
T Consensus 313 ~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR 392 (715)
T 2va8_A 313 KGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGR 392 (715)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCC
T ss_pred cCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCC
Confidence 35899999999999999999999999999999999999999999999998 88 78999999999999999
Q ss_pred CC--CccEEEEEEcccC
Q psy8497 359 YG--TRGLVITIVSAES 373 (2355)
Q Consensus 359 iG--QkGkVIVLVSsdD 373 (2355)
.| ..|.+++++...+
T Consensus 393 ~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 393 PGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTTCSCEEEEEECSCGG
T ss_pred CCCCCCceEEEEeCCch
Confidence 88 4788998887654
No 25
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=8.5e-39 Score=393.52 Aligned_cols=337 Identities=18% Similarity=0.251 Sum_probs=259.7
Q ss_pred CcccCC--cHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 23 ENDVLI--EKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 23 SFEeLl--Lkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
+|+++. +++ +.+.+...||..|+|+|.++++.++.++++||++|||+|||+++.++++..+.. ++++|||+|+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~ 77 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPL 77 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCc
Confidence 577777 777 999999999999999999999999999999999999999999999999988763 5789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
++|+.|+.+.++.+. .. ++.+..++|+..... ....++|+|+||++|..++......+..+++|||||+|.+.+.++
T Consensus 78 r~La~q~~~~~~~~~-~~-g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (702)
T 2p6r_A 78 RALAGEKYESFKKWE-KI-GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKR 155 (702)
T ss_dssp HHHHHHHHHHHTTTT-TT-TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTT
T ss_pred HHHHHHHHHHHHHHH-hc-CCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCc
Confidence 999999999986553 23 788999999865443 234689999999999988887665578999999999999988777
Q ss_pred HHHHHHHHHhC---CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEe-----ccCCCCCcchhh
Q psy8497 179 VEDITWIYSQL---PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL-----IPECKNPSLRYV 250 (2355)
Q Consensus 179 ~SrLeeILs~L---ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvq-----Vpe~kn~sLt~l 250 (2355)
...+..++..+ .+..|+|+||||+++ ...+..++..+. +...... ..+...+.. +...........
T Consensus 156 ~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~~~-~~~~~r~---~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (702)
T 2p6r_A 156 GATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDADY-YVSDWRP---VPLVEGVLCEGTLELFDGAFSTSRRV 229 (702)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTCEE-EECCCCS---SCEEEEEECSSEEEEEETTEEEEEEC
T ss_pred ccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCCCc-ccCCCCC---ccceEEEeeCCeeeccCcchhhhhhh
Confidence 77776666554 568999999999984 344445554332 2211111 111111110 000000000011
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc------------------------------CCccEEeeCCCC
Q psy8497 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA------------------------------NFGAEYLSGAQD 300 (2355)
Q Consensus 251 sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr------------------------------GIKVarLHGgMS 300 (2355)
.....+.+.+. ..+++||||++++.++.++..|... +..+.++||+|+
T Consensus 230 ~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 230 KFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp CHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred hHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC
Confidence 13344445554 3479999999999999999988753 246889999999
Q ss_pred HHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ec---CCCCHhHHHHHhhccCCCC--CccEEEEEEcc
Q psy8497 301 QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LE---IPHDAATYLHRMGRAGRYG--TRGLVITIVSA 371 (2355)
Q Consensus 301 qEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yD---SP~SPqSYIQRIGRAGRiG--QkGkVIVLVSs 371 (2355)
..+|..+++.|++|.++|||||+++++|||+|++++||. || .|.++.+|+||+|||||.| ..|.+++++..
T Consensus 308 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 308 NGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 999999999999999999999999999999999999997 66 6889999999999999988 47889999887
Q ss_pred cC
Q psy8497 372 ES 373 (2355)
Q Consensus 372 dD 373 (2355)
.+
T Consensus 388 ~~ 389 (702)
T 2p6r_A 388 RD 389 (702)
T ss_dssp GG
T ss_pred cc
Confidence 66
No 26
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1e-38 Score=393.92 Aligned_cols=338 Identities=17% Similarity=0.269 Sum_probs=265.3
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPY-VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~-LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
++|+++.+++ +.+.+...||..|+++|.++++. +..++++||++|||+|||+++.++++..+.. .++++|||+|+
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~~l~i~P~ 77 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT---QGGKAVYIVPL 77 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH---HCSEEEEECSS
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCCEEEEEcCc
Confidence 3688888888 99999999999999999999998 7889999999999999999999999987763 26799999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
++|+.|+.+.++.+.. . ++.+..++|+...... ...++|+|+||++|..++......+..+++|||||+|.+.+..+
T Consensus 78 raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 78 KALAEEKFQEFQDWEK-I-GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GGGHHHHHHHTGGGGG-G-TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHHHHh-c-CCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 9999999999976543 2 7889999997654321 23589999999999888887666678999999999999998888
Q ss_pred HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEe-----ccCCCCCcchhhhHH
Q psy8497 179 VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL-----IPECKNPSLRYVDEE 253 (2355)
Q Consensus 179 ~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvq-----Vpe~kn~sLt~lsKk 253 (2355)
...+..++..++...|+|+||||+++. ..+..++.... +..... ...+...+.. +..... .......
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~~r---p~~l~~~~~~~~~~~~~~~~~--~~~~~~~ 227 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGNP--EELAEWLNAEL-IVSDWR---PVKLRRGVFYQGFVTWEDGSI--DRFSSWE 227 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSCH--HHHHHHTTEEE-EECCCC---SSEEEEEEEETTEEEETTSCE--EECSSTT
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCCH--HHHHHHhCCcc-cCCCCC---CCcceEEEEeCCeeeccccch--hhhhHHH
Confidence 888988888887789999999999752 34444554221 111111 1111111110 111000 0001122
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc---------------------------------CCccEEeeCCCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA---------------------------------NFGAEYLSGAQD 300 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr---------------------------------GIKVarLHGgMS 300 (2355)
..+..++.. .+++||||++++.++.++..|... ...+.++||+|+
T Consensus 228 ~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~ 305 (720)
T 2zj8_A 228 ELVYDAIRK--KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG 305 (720)
T ss_dssp HHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHHHHhC--CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC
Confidence 334444443 479999999999999999998753 125899999999
Q ss_pred HHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ec----CCCCHhHHHHHhhccCCCC--CccEEEEEEc
Q psy8497 301 QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LE----IPHDAATYLHRMGRAGRYG--TRGLVITIVS 370 (2355)
Q Consensus 301 qEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yD----SP~SPqSYIQRIGRAGRiG--QkGkVIVLVS 370 (2355)
..+|..+++.|++|.++|||||+++++|||+|++++||. || .|.++.+|+||+|||||.| ..|.+++++.
T Consensus 306 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 306 RDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEec
Confidence 999999999999999999999999999999999999997 66 5889999999999999988 4788999988
Q ss_pred ccCH
Q psy8497 371 AESL 374 (2355)
Q Consensus 371 sdDV 374 (2355)
..+.
T Consensus 386 ~~~~ 389 (720)
T 2zj8_A 386 SDDP 389 (720)
T ss_dssp SSCH
T ss_pred CccH
Confidence 7763
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-38 Score=398.09 Aligned_cols=338 Identities=17% Similarity=0.230 Sum_probs=206.5
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-CCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 37 QENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-VQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 37 qa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
..+|+..|+|||.++++.++.++++||++|||+|||++|+++++..+.... ..++++|||||+++|+.||.+.+++++.
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 346788999999999999999999999999999999999999998887532 1277899999999999999999999986
Q ss_pred ccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcc-cCcCceEEEecccchhcccChHHHHH-HHHHh-
Q psy8497 116 HVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYL-NMDSVRLFIMDEADKLINTGFVEDIT-WIYSQ- 188 (2355)
Q Consensus 116 ~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~L-dLSkIdLLIVDEAHRLkN~GF~SrLe-eILs~- 188 (2355)
.. ++.+..++|+...... ...++|||+||++|...+....+ .+..|++|||||||++.+...+..+. .++..
T Consensus 322 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 322 RQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GG-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred cC-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 65 7899999998854432 12489999999999998887766 68889999999999998776444332 22222
Q ss_pred ---CCCCceEEEEEeccChh----------HHHHHHHhccCCeeeccCCCcc----ccccceEEEEeccC----------
Q psy8497 189 ---LPPMKQMLVVSATYSHD----------NLATLQKYMVDPLLIRPEDATR----PLLGVKQLVALIPE---------- 241 (2355)
Q Consensus 189 ---LppnrQILLLSATLS~E----------ILElLkKfLrdPvIIrVesee~----~~seVrQvVvqVpe---------- 241 (2355)
..+..++|+||||+... ....+...+....+........ ...........+..
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 14568999999999631 1111222222111111110000 00000000000000
Q ss_pred -------------------------CCCCc------c-------------------------------------------
Q psy8497 242 -------------------------CKNPS------L------------------------------------------- 247 (2355)
Q Consensus 242 -------------------------~kn~s------L------------------------------------------- 247 (2355)
..... .
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00000 0
Q ss_pred -------------------------------------------------hhhhHHHHHHHHHhc----CCCCeEEEEEcc
Q psy8497 248 -------------------------------------------------RYVDEEKKLVQLLSQ----TPFNQCVIFSNY 274 (2355)
Q Consensus 248 -------------------------------------------------t~lsKkeaLLqLLer----l~kgRVLVFSQT 274 (2355)
....+...|..+|.. ....++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 001133344444443 556799999999
Q ss_pred cccHHHHHHHHHhc------------CCccEEeeCCCCHHHHHHHHHHHhC-CCccEEEEecccccccCCCCccEEEEec
Q psy8497 275 QLRPEVICENLANA------------NFGAEYLSGAQDQKARLASLDSFKR-GKVRILVTTDLAARGIDAANVDLVINLE 341 (2355)
Q Consensus 275 RKmAEiLADyLrEr------------GIKVarLHGgMSqEERqeILErFRS-GEIdVLVSTSALGEGLDLPaVDTVIIyD 341 (2355)
+.+++.|+++|... |..+..+||+|+..+|..+++.|++ |.++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5567778899999999999999999 9999999999999999999999999999
Q ss_pred CCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHH
Q psy8497 342 IPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377 (2355)
Q Consensus 342 SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeI 377 (2355)
+|+|+..|+||+|| ||. +++.+++|+...+....
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 99999999999999 997 88999999987766554
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=400.43 Aligned_cols=331 Identities=17% Similarity=0.195 Sum_probs=258.7
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhc
Q psy8497 36 LQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGA 115 (2355)
Q Consensus 36 Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk 115 (2355)
...++| +|+++|.++++.+..++++||++|||+|||++++++++..+. .+.++|||+|+++|+.|+.+.+.+++.
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~----~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH----TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc----cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 344666 599999999999999999999999999999999999988775 367999999999999999999998864
Q ss_pred ccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceE
Q psy8497 116 HVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195 (2355)
Q Consensus 116 ~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQI 195 (2355)
.+.+++|+..... .++|+|+||++|..++......+..+++|||||+|++.+..+...+..++..++...|+
T Consensus 155 -----~vglltGd~~~~~---~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 155 -----DVGLMTGDITINP---DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp -----CEEEECSSCEECT---TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred -----CEEEEeCCCccCC---CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeE
Confidence 5778888876543 47899999999999888777778999999999999999998889999999999999999
Q ss_pred EEEEeccChhHH--HHHHHhccCCeeeccCCCccccccceEEEEecc--------CCCCCcc------------------
Q psy8497 196 LVVSATYSHDNL--ATLQKYMVDPLLIRPEDATRPLLGVKQLVALIP--------ECKNPSL------------------ 247 (2355)
Q Consensus 196 LLLSATLS~EIL--ElLkKfLrdPvIIrVesee~~~seVrQvVvqVp--------e~kn~sL------------------ 247 (2355)
|+||||++.... ..+......+..+...... ...+.+.+.... .......
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDD 304 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccc
Confidence 999999986432 2333333334333222211 112222222111 0000000
Q ss_pred --------------hh-------hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCC----------------
Q psy8497 248 --------------RY-------VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF---------------- 290 (2355)
Q Consensus 248 --------------t~-------lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGI---------------- 290 (2355)
.. ......++..+......++||||++++.++.++..|...++
T Consensus 305 ~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 384 (1010)
T 2xgj_A 305 PNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 384 (1010)
T ss_dssp ------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 00 11223455555554556999999999999999999876443
Q ss_pred -----------------------ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ecC-
Q psy8497 291 -----------------------GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LEI- 342 (2355)
Q Consensus 291 -----------------------KVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yDS- 342 (2355)
++.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||. ||.
T Consensus 385 ~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~ 464 (1010)
T 2xgj_A 385 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 464 (1010)
T ss_dssp HTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSS
T ss_pred HHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCc
Confidence 2789999999999999999999999999999999999999999999998 998
Q ss_pred ---CCCHhHHHHHhhccCCCCC--ccEEEEEEccc-CHHHHHHHH
Q psy8497 343 ---PHDAATYLHRMGRAGRYGT--RGLVITIVSAE-SLVKFHSLM 381 (2355)
Q Consensus 343 ---P~SPqSYIQRIGRAGRiGQ--kGkVIVLVSsd-DVEeIEsLr 381 (2355)
|+++.+|+||+|||||.|+ .|.||+++... +...+..++
T Consensus 465 ~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 465 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp CEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHH
T ss_pred CCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHH
Confidence 8999999999999999996 58999998765 555555553
No 29
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.3e-39 Score=389.98 Aligned_cols=327 Identities=17% Similarity=0.223 Sum_probs=222.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC--CCCCeEEEEcccHHHHHHH-HHHHHHHhcccCC
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP--VQQPQTIILAPTREIAVQI-TDVVRSVGAHVKN 119 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr--~qggRVLILVPTRALAqQ~-anwLREFgk~APg 119 (2355)
.|+|||.+++++++.++++||++|||+|||++|+++++..+.... ...+++|||+|+++|+.|| .+.+++++.. .
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~--~ 84 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--W 84 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--T
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--C
Confidence 899999999999999999999999999999999999998776421 2237899999999999999 9999998754 3
Q ss_pred cEEEEEECCccccCCC----CCCcEEEECHHHHHHHH------HhhcccCcCceEEEecccchhcccChHHHHHH-HHHh
Q psy8497 120 LHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMI------KLKYLNMDSVRLFIMDEADKLINTGFVEDITW-IYSQ 188 (2355)
Q Consensus 120 LrVVvytGGkq~rkqi----rq~DILVTTPErLLDLL------drr~LdLSkIdLLIVDEAHRLkN~GF~SrLee-ILs~ 188 (2355)
+.+..++|+....... ...+|||+||++|...+ ....+.+..|++|||||||++....++..+.. ++..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 7899999987654321 34899999999998877 45556788999999999999865443222222 2211
Q ss_pred ----C---------CCCceEEEEEeccChh-------HHHHHH---HhccCCeeeccCCCcc----ccccceEEEEeccC
Q psy8497 189 ----L---------PPMKQMLVVSATYSHD-------NLATLQ---KYMVDPLLIRPEDATR----PLLGVKQLVALIPE 241 (2355)
Q Consensus 189 ----L---------ppnrQILLLSATLS~E-------ILElLk---KfLrdPvIIrVesee~----~~seVrQvVvqVpe 241 (2355)
. .+.+++|+||||+... ....+. ..+....+........ ........+..+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 1 1567999999999962 222111 1222211111110000 00000001111100
Q ss_pred CCC------------------------Cc---------------------------------------------------
Q psy8497 242 CKN------------------------PS--------------------------------------------------- 246 (2355)
Q Consensus 242 ~kn------------------------~s--------------------------------------------------- 246 (2355)
... ..
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00
Q ss_pred --------------------------------------------------------chhhhHHHHHHHHHhcCC-CCeEE
Q psy8497 247 --------------------------------------------------------LRYVDEEKKLVQLLSQTP-FNQCV 269 (2355)
Q Consensus 247 --------------------------------------------------------Lt~lsKkeaLLqLLerl~-kgRVL 269 (2355)
.........|...+.... ..++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 000000112222233323 57999
Q ss_pred EEEcccccHHHHHHHHHhc------CCccEEeeCC--------CCHHHHHHHHHHHhCCCccEEEEecccccccCCCCcc
Q psy8497 270 IFSNYQLRPEVICENLANA------NFGAEYLSGA--------QDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335 (2355)
Q Consensus 270 VFSQTRKmAEiLADyLrEr------GIKVarLHGg--------MSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVD 335 (2355)
|||+++.+++.|+++|... |+.+..+||+ |+..+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999987 8999999999 9999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccC
Q psy8497 336 LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373 (2355)
Q Consensus 336 TVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdD 373 (2355)
+||+||+|+|+..|+||+|||+|.| +.++++....+
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 9999999999999999999987755 44455554443
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.9e-37 Score=395.22 Aligned_cols=341 Identities=17% Similarity=0.222 Sum_probs=205.6
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC-CCCCeEEEEcccHHHHHHHHHHHHH
Q psy8497 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-VQQPQTIILAPTREIAVQITDVVRS 112 (2355)
Q Consensus 34 K~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-~qggRVLILVPTRALAqQ~anwLRE 112 (2355)
....-.|+..|++||.+++++++.++++||++|||+|||++++++++..+.... ..++++|||+|+++|+.||.+.+++
T Consensus 239 ~~~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 239 KPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp ---------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 333345678999999999999999999999999999999999999987766421 1267899999999999999999999
Q ss_pred HhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcc-cCcCceEEEecccchhcccChHHHHH-HHH
Q psy8497 113 VGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYL-NMDSVRLFIMDEADKLINTGFVEDIT-WIY 186 (2355)
Q Consensus 113 Fgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~L-dLSkIdLLIVDEAHRLkN~GF~SrLe-eIL 186 (2355)
++... ++.+..++|+....... ..++|||+||++|.+.+....+ .+..+++|||||||++.+...+..+. .++
T Consensus 319 ~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~ 397 (936)
T 4a2w_A 319 HFERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (936)
T ss_dssp HHHTT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred Hhccc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHH
Confidence 87655 78999999988554332 2379999999999998887666 67889999999999998775433332 222
Q ss_pred Hh----CCCCceEEEEEeccChh----------HHHHHHHhccCCeeeccCCCcc----ccccceEEEEecc--------
Q psy8497 187 SQ----LPPMKQMLVVSATYSHD----------NLATLQKYMVDPLLIRPEDATR----PLLGVKQLVALIP-------- 240 (2355)
Q Consensus 187 s~----LppnrQILLLSATLS~E----------ILElLkKfLrdPvIIrVesee~----~~seVrQvVvqVp-------- 240 (2355)
.. ..+..++|+||||+... ....+...+....+........ ...........+.
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH
Confidence 22 14568999999999531 1111112222111111110000 0000000000000
Q ss_pred ---------------------------CCCCCc-----------------------------------------------
Q psy8497 241 ---------------------------ECKNPS----------------------------------------------- 246 (2355)
Q Consensus 241 ---------------------------e~kn~s----------------------------------------------- 246 (2355)
......
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~ 557 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 000000
Q ss_pred ---------------------------------------------------chhhhHHHHHHHHHhc----CCCCeEEEE
Q psy8497 247 ---------------------------------------------------LRYVDEEKKLVQLLSQ----TPFNQCVIF 271 (2355)
Q Consensus 247 ---------------------------------------------------Lt~lsKkeaLLqLLer----l~kgRVLVF 271 (2355)
.....+...|..+|.. ....++|||
T Consensus 558 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF 637 (936)
T 4a2w_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (936)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEE
T ss_pred hhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEE
Confidence 0001123344455543 345799999
Q ss_pred EcccccHHHHHHHHHhc------------CCccEEeeCCCCHHHHHHHHHHHhC-CCccEEEEecccccccCCCCccEEE
Q psy8497 272 SNYQLRPEVICENLANA------------NFGAEYLSGAQDQKARLASLDSFKR-GKVRILVTTDLAARGIDAANVDLVI 338 (2355)
Q Consensus 272 SQTRKmAEiLADyLrEr------------GIKVarLHGgMSqEERqeILErFRS-GEIdVLVSTSALGEGLDLPaVDTVI 338 (2355)
|+++++++.|+++|... |..+..+||+|+..+|..+++.|++ |.++|||||+++++|||+|.|++||
T Consensus 638 ~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI 717 (936)
T 4a2w_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (936)
T ss_dssp ESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEE
T ss_pred eCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEE
Confidence 99999999999999986 5556667888999999999999999 9999999999999999999999999
Q ss_pred EecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHH
Q psy8497 339 NLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377 (2355)
Q Consensus 339 IyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeI 377 (2355)
+||+|+|+..|+||+|| ||. ..+.+++|+...+....
T Consensus 718 ~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee~ 754 (936)
T 4a2w_A 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (936)
T ss_dssp EESCCSCSHHHHCC---------CCCEEEEESCHHHHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHHH
Confidence 99999999999999999 997 78899999877766543
No 31
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2e-36 Score=388.91 Aligned_cols=329 Identities=17% Similarity=0.191 Sum_probs=251.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
++| +|+++|.++++.++.++++||++|||+|||++|+++++..+. .+.++|||+|+++|+.|+.+.+.+++ +
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~----~g~~vlvl~PtraLa~Q~~~~l~~~~---~ 107 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR----NMTKTIYTSPIKALSNQKFRDFKETF---D 107 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH----TTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHHc---C
Confidence 555 699999999999999999999999999999999988887665 36789999999999999999998864 3
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
++.+..++|+..... ..+|+|+||++|.+++......+..+++|||||||++.++++...+..++..+++..|+|+|
T Consensus 108 ~~~v~~l~G~~~~~~---~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlL 184 (997)
T 4a4z_A 108 DVNIGLITGDVQINP---DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILL 184 (997)
T ss_dssp -CCEEEECSSCEECT---TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEE
T ss_pred CCeEEEEeCCCccCC---CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEE
Confidence 678889999876543 37899999999999988877778899999999999999999889999999999999999999
Q ss_pred EeccChhHHHHHHHh---ccCCeeeccCCCccccccceEEE-------EeccCCCC------------------------
Q psy8497 199 SATYSHDNLATLQKY---MVDPLLIRPEDATRPLLGVKQLV-------ALIPECKN------------------------ 244 (2355)
Q Consensus 199 SATLS~EILElLkKf---LrdPvIIrVesee~~~seVrQvV-------vqVpe~kn------------------------ 244 (2355)
|||++... ++...+ ...+..+...... ..++...+ ..+.....
T Consensus 185 SAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (997)
T 4a4z_A 185 SATVPNTY-EFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSK 261 (997)
T ss_dssp ECCCTTHH-HHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------
T ss_pred cCCCCChH-HHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccc
Confidence 99987543 222221 1122222111111 11111111 00000000
Q ss_pred ------------------------------------------------------CcchhhhHHHHHHHHHhcCCCCeEEE
Q psy8497 245 ------------------------------------------------------PSLRYVDEEKKLVQLLSQTPFNQCVI 270 (2355)
Q Consensus 245 ------------------------------------------------------~sLt~lsKkeaLLqLLerl~kgRVLV 270 (2355)
...........|+..+......++||
T Consensus 262 ~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IV 341 (997)
T 4a4z_A 262 TDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVV 341 (997)
T ss_dssp -------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEE
Confidence 00001123456777777777779999
Q ss_pred EEcccccHHHHHHHHHhcCC---------------------------------------ccEEeeCCCCHHHHHHHHHHH
Q psy8497 271 FSNYQLRPEVICENLANANF---------------------------------------GAEYLSGAQDQKARLASLDSF 311 (2355)
Q Consensus 271 FSQTRKmAEiLADyLrErGI---------------------------------------KVarLHGgMSqEERqeILErF 311 (2355)
||.+++.++.++..|...++ ++..+||+|++.+|..+++.|
T Consensus 342 F~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F 421 (997)
T 4a4z_A 342 FVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILF 421 (997)
T ss_dssp ECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHH
Confidence 99999999999999977655 579999999999999999999
Q ss_pred hCCCccEEEEecccccccCCCCccEEEEecCCC---------CHhHHHHHhhccCCCC--CccEEEEEEc--ccCHHHHH
Q psy8497 312 KRGKVRILVTTDLAARGIDAANVDLVINLEIPH---------DAATYLHRMGRAGRYG--TRGLVITIVS--AESLVKFH 378 (2355)
Q Consensus 312 RSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~---------SPqSYIQRIGRAGRiG--QkGkVIVLVS--sdDVEeIE 378 (2355)
+.|.++|||||+++++|||+|+ .+||+++.+. ++.+|+|++|||||.| ..|.||+++. ..+...+.
T Consensus 422 ~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~ 500 (997)
T 4a4z_A 422 SKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFK 500 (997)
T ss_dssp HTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHH
T ss_pred HCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHH
Confidence 9999999999999999999999 5555555544 9999999999999988 5677777773 34555566
Q ss_pred HHHH
Q psy8497 379 SLMG 382 (2355)
Q Consensus 379 sLrR 382 (2355)
.++.
T Consensus 501 ~~i~ 504 (997)
T 4a4z_A 501 EVTM 504 (997)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 32
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.6e-36 Score=356.17 Aligned_cols=321 Identities=15% Similarity=0.240 Sum_probs=223.6
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
.|+|||.++++|+. .+.++||+++||+|||++++..+..... .....++|||||+ .|+.||.+.++++. |
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~--~~~~~~~LIv~P~-~l~~qw~~e~~~~~---~ 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK--ENELTPSLVICPL-SVLKNWEEELSKFA---P 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH--TTCCSSEEEEECS-TTHHHHHHHHHHHC---T
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh--cCCCCCEEEEccH-HHHHHHHHHHHHHC---C
Confidence 79999999999984 4678999999999999887655544333 2345689999996 58888888888774 5
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
.+.+.++.|+.. ......++|+|+||++|..... +....|++|||||||++.+.. ......+..++ ..++++|
T Consensus 111 ~~~v~~~~g~~~-~~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l~L 183 (500)
T 1z63_A 111 HLRFAVFHEDRS-KIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRIAL 183 (500)
T ss_dssp TSCEEECSSSTT-SCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEEEE
T ss_pred CceEEEEecCch-hccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEEEE
Confidence 677888777663 2233458999999999865443 345678999999999998765 34455566664 5678999
Q ss_pred EeccChhHHHHHHH---h---------------------------------ccCCeeeccCCCc----cccccceEEEEe
Q psy8497 199 SATYSHDNLATLQK---Y---------------------------------MVDPLLIRPEDAT----RPLLGVKQLVAL 238 (2355)
Q Consensus 199 SATLS~EILElLkK---f---------------------------------LrdPvIIrVesee----~~~seVrQvVvq 238 (2355)
||||..+....+.. + +..++.++..... ............
T Consensus 184 TaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~ 263 (500)
T 1z63_A 184 TGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVY 263 (500)
T ss_dssp CSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEE
Confidence 99997543222111 0 1123333222111 011111222222
Q ss_pred ccCCCCC-------------------------------------------------cchhhhHHHHHHHHHhcC--CCCe
Q psy8497 239 IPECKNP-------------------------------------------------SLRYVDEEKKLVQLLSQT--PFNQ 267 (2355)
Q Consensus 239 Vpe~kn~-------------------------------------------------sLt~lsKkeaLLqLLerl--~kgR 267 (2355)
++..... ......+...+.+++... ...+
T Consensus 264 ~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k 343 (500)
T 1z63_A 264 CNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDK 343 (500)
T ss_dssp ECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCc
Confidence 2111000 000112333344444332 4569
Q ss_pred EEEEEcccccHHHHHHHHHhc-CCccEEeeCCCCHHHHHHHHHHHhCC-Ccc-EEEEecccccccCCCCccEEEEecCCC
Q psy8497 268 CVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRG-KVR-ILVTTDLAARGIDAANVDLVINLEIPH 344 (2355)
Q Consensus 268 VLVFSQTRKmAEiLADyLrEr-GIKVarLHGgMSqEERqeILErFRSG-EId-VLVSTSALGEGLDLPaVDTVIIyDSP~ 344 (2355)
+||||+++.+++.|...|... ++.+.++||+|+..+|..+++.|+++ .+. |||+|.++++|||+|.+++||++|+||
T Consensus 344 ~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~ 423 (500)
T 1z63_A 344 IAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWW 423 (500)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCS
T ss_pred EEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCC
Confidence 999999999999999999985 99999999999999999999999988 555 799999999999999999999999999
Q ss_pred CHhHHHHHhhccCCCCCccEE--EEEEcccCHHH
Q psy8497 345 DAATYLHRMGRAGRYGTRGLV--ITIVSAESLVK 376 (2355)
Q Consensus 345 SPqSYIQRIGRAGRiGQkGkV--IVLVSsdDVEe 376 (2355)
|+..++|++||++|.|+...| +.|+...+.+.
T Consensus 424 ~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 424 NPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp CC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred CcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 999999999999999976554 55556665543
No 33
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1e-36 Score=358.66 Aligned_cols=310 Identities=17% Similarity=0.169 Sum_probs=228.5
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
.+|+++|.++++.++.++++||++|||+|||++++++++..+.. ..+++|||||+++|+.||.+.+.++... +.+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---~~~~vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~ 187 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---YEGKILIIVPTTALTTQMADDFVDYRLF-SHAM 187 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH---CSSEEEEEESSHHHHHHHHHHHHHTTSS-CGGG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC---CCCeEEEEECcHHHHHHHHHHHHHhhcC-Cccc
Confidence 38999999999999999999999999999999999888877653 3459999999999999999999888543 3677
Q ss_pred EEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 122 VDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 122 VVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
+..+.|+..... .....+|+|+||+.|... ....+..+++|||||+|++.. ..+..++..+....++|+|||
T Consensus 188 v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 188 IKKIGGGASKDDKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp EEECGGGCCTTGGGCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEES
T ss_pred eEEEecCCccccccccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEe
Confidence 888877754432 123489999999976432 224467899999999999875 446667778877889999999
Q ss_pred ccChhHHHHHH-HhccCCeeeccCCCcc----cc--ccceEEEEeccCCC------CCcch---h----hhHHHHHHHHH
Q psy8497 201 TYSHDNLATLQ-KYMVDPLLIRPEDATR----PL--LGVKQLVALIPECK------NPSLR---Y----VDEEKKLVQLL 260 (2355)
Q Consensus 201 TLS~EILElLk-KfLrdPvIIrVesee~----~~--seVrQvVvqVpe~k------n~sLt---~----lsKkeaLLqLL 260 (2355)
||+......+. ..+..+..+....... .. ..+......++... ..... . ..+...+..++
T Consensus 261 Tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 340 (510)
T 2oca_A 261 SLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLA 340 (510)
T ss_dssp CGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHH
Confidence 99765322211 1223333333222110 01 11111111111100 00000 0 01122333333
Q ss_pred hcC---CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCccE
Q psy8497 261 SQT---PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT-DLAARGIDAANVDL 336 (2355)
Q Consensus 261 erl---~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST-SALGEGLDLPaVDT 336 (2355)
... ...++|||+. ++.++.|++.|...+..+.++||+|+..+|..+++.|++|+++||||| +++++|||+|.+++
T Consensus 341 ~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~ 419 (510)
T 2oca_A 341 IKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHH 419 (510)
T ss_dssp HHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEE
T ss_pred HHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcE
Confidence 322 3446677776 888999999999998899999999999999999999999999999999 99999999999999
Q ss_pred EEEecCCCCHhHHHHHhhccCCCCCcc
Q psy8497 337 VINLEIPHDAATYLHRMGRAGRYGTRG 363 (2355)
Q Consensus 337 VIIyDSP~SPqSYIQRIGRAGRiGQkG 363 (2355)
||+++.|+++..|+|++||+||.|+.+
T Consensus 420 vi~~~~~~s~~~~~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 420 VVLAHGVKSKIIVLQTIGRVLRKHGSK 446 (510)
T ss_dssp EEESSCCCSCCHHHHHHHHHHTTTCCC
T ss_pred EEEeCCCCCHHHHHHHHhcccccCCCC
Confidence 999999999999999999999999776
No 34
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.4e-36 Score=352.24 Aligned_cols=304 Identities=18% Similarity=0.210 Sum_probs=220.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE-
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH- 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr- 121 (2355)
.|+|+|.++++.++.+.++||++|||+|||++++.++... +.++|||||+++|+.||.+.+.+| ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF-----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG-----CGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC-----CCcc
Confidence 6899999999999999899999999999999998877643 568999999999999999998884 566
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
+.++.|+... ..+|+|+||+.|...+.. + ...|++|||||+|++.+..+.. ++..+ ...++|+||||
T Consensus 161 v~~~~g~~~~-----~~~Ivv~T~~~l~~~~~~--~-~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSAT 227 (472)
T 2fwr_A 161 VGEFSGRIKE-----LKPLTVSTYDSAYVNAEK--L-GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTAT 227 (472)
T ss_dssp EEEBSSSCBC-----CCSEEEEEHHHHHHTHHH--H-TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESC
T ss_pred eEEECCCcCC-----cCCEEEEEcHHHHHHHHH--h-cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEecC
Confidence 7888777643 367999999998665532 1 2458899999999999877643 44444 46789999999
Q ss_pred cChhHH--HHHHHhccCCeeeccCCCcc---ccccce--EEEEec----------------------------cCCCCCc
Q psy8497 202 YSHDNL--ATLQKYMVDPLLIRPEDATR---PLLGVK--QLVALI----------------------------PECKNPS 246 (2355)
Q Consensus 202 LS~EIL--ElLkKfLrdPvIIrVesee~---~~seVr--QvVvqV----------------------------pe~kn~s 246 (2355)
|..... ..+..+ ..+.......... ...... .+...+ .......
T Consensus 228 p~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 306 (472)
T 2fwr_A 228 FEREDGRHEILKEV-VGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKI 306 (472)
T ss_dssp CCCTTSGGGSHHHH-TCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTT
T ss_pred ccCCCCHHHHHHHH-hCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHH
Confidence 973211 011111 1111111100000 000000 000000 0000000
Q ss_pred ------------------------chhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHH
Q psy8497 247 ------------------------LRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQK 302 (2355)
Q Consensus 247 ------------------------Lt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqE 302 (2355)
.....+...|..++......++||||+++..++.+++.|. +..+||+++..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~ 381 (472)
T 2fwr_A 307 VMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSRE 381 (472)
T ss_dssp TTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHH
Confidence 0011344667777777777899999999999999999874 56799999999
Q ss_pred HHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCc---cEEEEEEcccCHHHH
Q psy8497 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR---GLVITIVSAESLVKF 377 (2355)
Q Consensus 303 ERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQk---GkVIVLVSsdDVEeI 377 (2355)
+|..+++.|++|+++|||||+++++|||+|.+++||+++.|+++..|+|++|||||.|+. +.++.|+...+.++.
T Consensus 382 ~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~ 459 (472)
T 2fwr_A 382 EREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVN 459 (472)
T ss_dssp HHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---
T ss_pred HHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHH
Confidence 999999999999999999999999999999999999999999999999999999999854 345556666555543
No 35
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-36 Score=375.20 Aligned_cols=325 Identities=18% Similarity=0.256 Sum_probs=228.2
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPYVL----NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~LL----SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|+|||.++++||+ .+.++||+++||+|||++++..+...+. .....+++|||||. .|+.||.+.+.++ +
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~-~~~~~~~~LIV~P~-sll~qW~~E~~~~---~ 309 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIF-ARRQNGPHIIVVPL-STMPAWLDTFEKW---A 309 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHH-HHSCCSCEEEECCT-TTHHHHHHHHHHH---S
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHH-hcCCCCCEEEEECc-hHHHHHHHHHHHH---C
Confidence 389999999999987 6788999999999999887655544332 23456789999995 5667766666655 5
Q ss_pred CCcEEEEEECCcccc----------------CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHH
Q psy8497 118 KNLHVDYFIGGTQVE----------------RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVED 181 (2355)
Q Consensus 118 PgLrVVvytGGkq~r----------------kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~Sr 181 (2355)
|.+.++++.|....+ .....++|+|+||+++..... .+....|++|||||||++++.. ..
T Consensus 310 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~~--s~ 385 (800)
T 3mwy_W 310 PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNAE--SS 385 (800)
T ss_dssp TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCSS--SH
T ss_pred CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCch--hH
Confidence 788999999876432 123348999999999865432 3344578999999999998765 45
Q ss_pred HHHHHHhCCCCceEEEEEeccChhHHHHHHH---hc------------------------------cCCeeeccCCCcc-
Q psy8497 182 ITWIYSQLPPMKQMLVVSATYSHDNLATLQK---YM------------------------------VDPLLIRPEDATR- 227 (2355)
Q Consensus 182 LeeILs~LppnrQILLLSATLS~EILElLkK---fL------------------------------rdPvIIrVesee~- 227 (2355)
+...+..+. ....|+|||||..+....+.. ++ ..+++++......
T Consensus 386 ~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~ 464 (800)
T 3mwy_W 386 LYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVE 464 (800)
T ss_dssp HHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGT
T ss_pred HHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhh
Confidence 555666663 456789999995432222111 11 1112221111110
Q ss_pred -ccccceEEEEeccCCCC----------------------------------------Cc--------------------
Q psy8497 228 -PLLGVKQLVALIPECKN----------------------------------------PS-------------------- 246 (2355)
Q Consensus 228 -~~seVrQvVvqVpe~kn----------------------------------------~s-------------------- 246 (2355)
...........++.... +.
T Consensus 465 ~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~ 544 (800)
T 3mwy_W 465 KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 544 (800)
T ss_dssp TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCS
T ss_pred hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccH
Confidence 01111111221111000 00
Q ss_pred -------chhhhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCc-
Q psy8497 247 -------LRYVDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV- 316 (2355)
Q Consensus 247 -------Lt~lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEI- 316 (2355)
.....+...|..+|... .+++|||||+++.+++.|.++|...|+.+.+|||+++..+|..+++.|+++..
T Consensus 545 ~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 545 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred HHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 00112334455555432 35699999999999999999999999999999999999999999999998544
Q ss_pred --cEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCcc--EEEEEEcccCHHH
Q psy8497 317 --RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG--LVITIVSAESLVK 376 (2355)
Q Consensus 317 --dVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkG--kVIVLVSsdDVEe 376 (2355)
.|||+|.++++||||+.+++||+||+||||..++||+||++|+|+.. .|+.|+...+++.
T Consensus 625 ~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 625 DFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp CCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred ceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 59999999999999999999999999999999999999999999765 4555566665544
No 36
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.9e-35 Score=392.65 Aligned_cols=344 Identities=16% Similarity=0.206 Sum_probs=252.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
..+.++..+|..|+|+|.++++.++. +.+++|++|||+|||+++.++|+..|.+ ..+.++|||+|+++|+.|..+.+
T Consensus 915 ~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~--~~~~kavyi~P~raLa~q~~~~~ 992 (1724)
T 4f92_B 915 AFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ--SSEGRCVYITPMEALAEQVYMDW 992 (1724)
T ss_dssp HHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh--CCCCEEEEEcChHHHHHHHHHHH
Confidence 67777888999999999999999986 5679999999999999999999999875 34678999999999999999888
Q ss_pred HHHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHh--hcccCcCceEEEecccchhcccChHHHHHHHH-
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKL--KYLNMDSVRLFIMDEADKLINTGFVEDITWIY- 186 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF~SrLeeIL- 186 (2355)
.+.+....+++|..++|+..... ....++|||||||+|..++.. ....+..+++|||||+|+|.+. ++..+..++
T Consensus 993 ~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~ 1071 (1724)
T 4f92_B 993 YEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICS 1071 (1724)
T ss_dssp HHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHHHHHH
T ss_pred HHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHHHHHH
Confidence 76444434889999999875432 123478999999999776653 2223678999999999988764 444443333
Q ss_pred ------HhCCCCceEEEEEeccChhHHHHHHHhccC-C-eeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHH
Q psy8497 187 ------SQLPPMKQMLVVSATYSHDNLATLQKYMVD-P-LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ 258 (2355)
Q Consensus 187 ------s~LppnrQILLLSATLS~EILElLkKfLrd-P-vIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLq 258 (2355)
..++...|+|+||||+++. ..+..|+.. . ..+..... ..+..+...+....... ...........+..
T Consensus 1072 rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~-~~~~~~~~~~~~~~ 1147 (1724)
T 4f92_B 1072 RMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISH-TQTRLLSMAKPVYH 1147 (1724)
T ss_dssp HHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCS-HHHHHHTTHHHHHH
T ss_pred HHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCC-chhhhhhhcchHHH
Confidence 4456789999999999842 334444432 1 11111111 12223333333222221 11111111122222
Q ss_pred -HHhcCCCCeEEEEEcccccHHHHHHHHHhc----------------------------------CCccEEeeCCCCHHH
Q psy8497 259 -LLSQTPFNQCVIFSNYQLRPEVICENLANA----------------------------------NFGAEYLSGAQDQKA 303 (2355)
Q Consensus 259 -LLerl~kgRVLVFSQTRKmAEiLADyLrEr----------------------------------GIKVarLHGgMSqEE 303 (2355)
+.......++||||++++.++.++..|... ..+++++|++|+..+
T Consensus 1148 ~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~ 1227 (1724)
T 4f92_B 1148 AITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPME 1227 (1724)
T ss_dssp HHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHH
T ss_pred HHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHH
Confidence 233445579999999999998887766421 246899999999999
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ec------CCCCHhHHHHHhhccCCCCC--ccEEEEEEcc
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LE------IPHDAATYLHRMGRAGRYGT--RGLVITIVSA 371 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yD------SP~SPqSYIQRIGRAGRiGQ--kGkVIVLVSs 371 (2355)
|..+++.|++|.++|||||+++++|||+|+..+||. || .|.++.+|+||+|||||.|. .|.+++++..
T Consensus 1228 R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~ 1307 (1724)
T 4f92_B 1228 RRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQG 1307 (1724)
T ss_dssp HHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEG
T ss_pred HHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecc
Confidence 999999999999999999999999999999888882 22 35789999999999999986 6899999988
Q ss_pred cCHHHHHHHHH
Q psy8497 372 ESLVKFHSLMG 382 (2355)
Q Consensus 372 dDVEeIEsLrR 382 (2355)
.+...++.++.
T Consensus 1308 ~~~~~~~~ll~ 1318 (1724)
T 4f92_B 1308 SKKDFFKKFLY 1318 (1724)
T ss_dssp GGHHHHHHHTT
T ss_pred hHHHHHHHHhC
Confidence 88877777654
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.3e-35 Score=391.34 Aligned_cols=336 Identities=20% Similarity=0.246 Sum_probs=250.4
Q ss_pred CCCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHhcC-------CCCCeEEEEcccHHHHHHHHHHHH
Q psy8497 40 GFVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIKLP-------VQQPQTIILAPTREIAVQITDVVR 111 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~ekr-------~qggRVLILVPTRALAqQ~anwLR 111 (2355)
||.+|+++|.++++.++. ++|+||+||||+|||+++.++++..|.+.. ..+.++|||+|+++|+.|+.+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999885 689999999999999999999999987421 346789999999999999999999
Q ss_pred HHhcccCCcEEEEEECCccccC-CCCCCcEEEECHHHHHHHHHhhc--ccCcCceEEEecccchhcccChHHHHHHHHH-
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKY--LNMDSVRLFIMDEADKLINTGFVEDITWIYS- 187 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~--LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs- 187 (2355)
+.+... +++|..++|+..... ....++|+|||||++..++.... ..+..+++|||||+|.|.+ .++..++.++.
T Consensus 156 ~~~~~~-gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~r 233 (1724)
T 4f92_B 156 KRLATY-GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVAR 233 (1724)
T ss_dssp HHHTTT-TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHH
T ss_pred HHHhhC-CCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHH
Confidence 887776 899999999876543 33458999999999865554321 1357899999999997765 45555554443
Q ss_pred ------hCCCCceEEEEEeccChhHHHHHHHhccCCe---eeccCCCccccccceEEEEeccCCCCCcchhhh-HHHHHH
Q psy8497 188 ------QLPPMKQMLVVSATYSHDNLATLQKYMVDPL---LIRPEDATRPLLGVKQLVALIPECKNPSLRYVD-EEKKLV 257 (2355)
Q Consensus 188 ------~LppnrQILLLSATLS~EILElLkKfLrdPv---IIrVesee~~~seVrQvVvqVpe~kn~sLt~ls-KkeaLL 257 (2355)
.++...|+|+||||+++ ...+..|+.... ...+.. ...+..+.+.+..+.... ...... ....+.
T Consensus 234 l~~~~~~~~~~~riI~LSATl~N--~~dvA~wL~~~~~~~~~~~~~-~~RPvpL~~~~~~~~~~~--~~~~~~~~~~~~~ 308 (1724)
T 4f92_B 234 AIRNIEMTQEDVRLIGLSATLPN--YEDVATFLRVDPAKGLFYFDN-SFRPVPLEQTYVGITEKK--AIKRFQIMNEIVY 308 (1724)
T ss_dssp HHHHHHHHTCCCEEEEEECSCTT--HHHHHHHTTCCHHHHEEECCG-GGCSSCEEEECCEECCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcEEEEecccCC--HHHHHHHhCCCCCCCeEEECC-CCccCccEEEEeccCCcc--hhhhhHHHHHHHH
Confidence 45678999999999984 334555554320 111111 112223333332222221 111111 112233
Q ss_pred HHH-hcCCCCeEEEEEcccccHHHHHHHHHhc-------------------------------------CCccEEeeCCC
Q psy8497 258 QLL-SQTPFNQCVIFSNYQLRPEVICENLANA-------------------------------------NFGAEYLSGAQ 299 (2355)
Q Consensus 258 qLL-erl~kgRVLVFSQTRKmAEiLADyLrEr-------------------------------------GIKVarLHGgM 299 (2355)
..+ .....+++||||++++.++.++..|.+. ..+++++||+|
T Consensus 309 ~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 309 EKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 333 3344569999999999999988887641 24588999999
Q ss_pred CHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE----ecC------CCCHhHHHHHhhccCCCC--CccEEEE
Q psy8497 300 DQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN----LEI------PHDAATYLHRMGRAGRYG--TRGLVIT 367 (2355)
Q Consensus 300 SqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII----yDS------P~SPqSYIQRIGRAGRiG--QkGkVIV 367 (2355)
+..+|..+++.|++|.++|||||+++++|||+|++++||. |+. |.++.+|+||+|||||.| ..|.+|+
T Consensus 389 ~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 389 TRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp CTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 9999999999999999999999999999999999999984 443 468999999999999987 4688999
Q ss_pred EEcccCHHHHHHHHH
Q psy8497 368 IVSAESLVKFHSLMG 382 (2355)
Q Consensus 368 LVSsdDVEeIEsLrR 382 (2355)
++...+...+..++.
T Consensus 469 ~~~~~~~~~~~~ll~ 483 (1724)
T 4f92_B 469 ITSHGELQYYLSLLN 483 (1724)
T ss_dssp EEESTTCCHHHHHTT
T ss_pred EecchhHHHHHHHHc
Confidence 988887777666654
No 38
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.5e-35 Score=376.56 Aligned_cols=323 Identities=19% Similarity=0.226 Sum_probs=249.2
Q ss_pred HHHHHH-HCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQ-ENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lq-a~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+.+.+. .+|| +|+|+|.++++.++.++++|+++|||+|||++++++++..+. .++++|||+|+++|+.|+.+.+
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHHHH
Confidence 344443 3788 799999999999999999999999999999988888776653 4778999999999999999999
Q ss_pred HHHhcccCCcEEEEEECCccccC-------C-CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc-------
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER-------P-KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN------- 175 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk-------q-irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN------- 175 (2355)
++++ ..++.+..++|+..... . ...++|||+||++|.+++.. +.+..+++|||||||++..
T Consensus 142 ~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 142 QKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchh
Confidence 9976 34889999999876511 1 12389999999999877764 5677899999999987653
Q ss_pred ----cChHHH-HHHHHHhCC-----------CCceEEEEEecc-ChhHHH-HHHHhccCCeeeccCCCccccccceEEEE
Q psy8497 176 ----TGFVED-ITWIYSQLP-----------PMKQMLVVSATY-SHDNLA-TLQKYMVDPLLIRPEDATRPLLGVKQLVA 237 (2355)
Q Consensus 176 ----~GF~Sr-LeeILs~Lp-----------pnrQILLLSATL-S~EILE-lLkKfLrdPvIIrVesee~~~seVrQvVv 237 (2355)
.+|... +..++..++ ...|+|++|||+ +..+.. .+..++. +.+.........+.+.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRI 293 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEE
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEE
Confidence 666666 788888776 788999999994 433322 2222222 222222333444555544
Q ss_pred eccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccE-EeeCCCCHHHHHHHHHHHhCCCc
Q psy8497 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAE-YLSGAQDQKARLASLDSFKRGKV 316 (2355)
Q Consensus 238 qVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVa-rLHGgMSqEERqeILErFRSGEI 316 (2355)
.+. +...|..++... ..++||||+++..++.|+..|...++.+. .+|| +|.+ ++.|++|++
T Consensus 294 ~~~-----------k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~ 355 (1104)
T 4ddu_A 294 SSR-----------SKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKI 355 (1104)
T ss_dssp SCC-----------CHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSC
T ss_pred ecC-----------HHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCC
Confidence 331 234445555543 37999999999999999999999999998 9998 2555 999999999
Q ss_pred cEEEE----ecccccccCCCC-ccEEEEecCCC-----------------------------------------------
Q psy8497 317 RILVT----TDLAARGIDAAN-VDLVINLEIPH----------------------------------------------- 344 (2355)
Q Consensus 317 dVLVS----TSALGEGLDLPa-VDTVIIyDSP~----------------------------------------------- 344 (2355)
+|||| |+++++|||+|+ |++||+||.|.
T Consensus 356 ~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~ 435 (1104)
T 4ddu_A 356 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQK 435 (1104)
T ss_dssp SEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHH
T ss_pred CEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 99999 999999999999 99999999998
Q ss_pred -------------------------CHhHHHHHhhccCCCCCcc--EEEEEEcccCHHHHHHHHHhhc
Q psy8497 345 -------------------------DAATYLHRMGRAGRYGTRG--LVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 345 -------------------------SPqSYIQRIGRAGRiGQkG--kVIVLVSsdDVEeIEsLrReLK 385 (2355)
++..|+||+||+||.|..| +.+.++..++...+..+.+.+.
T Consensus 436 ~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 436 EFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7789999999999965432 3444444577777777766554
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.9e-35 Score=378.44 Aligned_cols=323 Identities=15% Similarity=0.227 Sum_probs=246.9
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHH
Q psy8497 32 IRQGLQE-NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 32 LLK~Lqa-~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwL 110 (2355)
+.+.+.. +||. | ++|.++++.++.++++|+++|||+|||+ +.++++..+.. .++++|||+|+++|+.|+.+.+
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHH
Confidence 4555554 8998 9 9999999999999999999999999997 77777776653 4678999999999999999999
Q ss_pred HHHhcccCCc----EEEEEECCccccC------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHH
Q psy8497 111 RSVGAHVKNL----HVDYFIGGTQVER------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVE 180 (2355)
Q Consensus 111 REFgk~APgL----rVVvytGGkq~rk------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~S 180 (2355)
++++... ++ .+..++|+..... ....++|+|+||++|.+++.. +..+++|||||||++.++ ..
T Consensus 120 ~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~--~~ 192 (1054)
T 1gku_B 120 RKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA--SK 192 (1054)
T ss_dssp HHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS--TH
T ss_pred HHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc--cc
Confidence 9998766 56 8889999865432 112289999999999877654 568999999999999984 47
Q ss_pred HHHHHHHhC-----------CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchh
Q psy8497 181 DITWIYSQL-----------PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRY 249 (2355)
Q Consensus 181 rLeeILs~L-----------ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~ 249 (2355)
.+..++..+ +...|++++|||++.. ......++..+..+.+.........+.+.+. ...
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~--~~~------- 262 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV--NDE------- 262 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE--SCC-------
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe--chh-------
Confidence 777777766 3457899999999876 3222233322222333333233333444433 111
Q ss_pred hhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEE----eccc
Q psy8497 250 VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVT----TDLA 325 (2355)
Q Consensus 250 lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVS----TSAL 325 (2355)
+...|..++... ..++||||++++.++.|+..|... +.+..+||+| ..+++.|++|.++|||| |+++
T Consensus 263 --k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 263 --SISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp --CTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC-----
T ss_pred --HHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCee
Confidence 122345555544 468999999999999999999988 9999999998 37889999999999999 8999
Q ss_pred ccccCCCCc-cEEEEecCC-------------------------------------------------------------
Q psy8497 326 ARGIDAANV-DLVINLEIP------------------------------------------------------------- 343 (2355)
Q Consensus 326 GEGLDLPaV-DTVIIyDSP------------------------------------------------------------- 343 (2355)
++|||+|+| ++||+++.|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999996 999999999
Q ss_pred ----------CCHhHHHHHhhccCCCCCcc--EEEEEEcccCHHHHHHHHHhhcc
Q psy8497 344 ----------HDAATYLHRMGRAGRYGTRG--LVITIVSAESLVKFHSLMGEINL 386 (2355)
Q Consensus 344 ----------~SPqSYIQRIGRAGRiGQkG--kVIVLVSsdDVEeIEsLrReLKL 386 (2355)
.+...|+||+|||||.|..| .+++|+...+...+..+.+.+..
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 68999999999999987765 47888878788887777666553
No 40
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-33 Score=346.24 Aligned_cols=326 Identities=17% Similarity=0.223 Sum_probs=223.5
Q ss_pred CCcHHHHHHHHHHH---------cCCcEEEEccCCchHHHHHHHHHHHHHHhcCC---CCCeEEEEcccHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVL---------NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV---QQPQTIILAPTREIAVQITDVV 110 (2355)
Q Consensus 43 eLRPYQeEALn~LL---------SGRNVILAAPTGSGKTLVALIAILerL~ekr~---qggRVLILVPTRALAqQ~anwL 110 (2355)
.|+|||.+++.|++ .+.++||+++||+|||++++..+...+..... ...++|||||+ +|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 79999999999985 24569999999999998887666655543221 23569999997 7778888888
Q ss_pred HHHhcccCCcEEEEEECCccccC------------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh
Q psy8497 111 RSVGAHVKNLHVDYFIGGTQVER------------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 111 REFgk~APgLrVVvytGGkq~rk------------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
.++... .+.++.+.++..... ....++|+|+||+.+.... ..+....|++|||||||++++..
T Consensus 134 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh-
Confidence 887643 355666666542210 0123789999999986433 44556789999999999999765
Q ss_pred HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHH-------------------h--------------------------
Q psy8497 179 VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQK-------------------Y-------------------------- 213 (2355)
Q Consensus 179 ~SrLeeILs~LppnrQILLLSATLS~EILElLkK-------------------f-------------------------- 213 (2355)
......+..+. ....|+|||||.++....+.. +
T Consensus 209 -~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 44455555554 457899999997543110000 0
Q ss_pred ---ccCCeeeccCCCcc--ccccceEEEEeccCCC--------------------C------------------------
Q psy8497 214 ---MVDPLLIRPEDATR--PLLGVKQLVALIPECK--------------------N------------------------ 244 (2355)
Q Consensus 214 ---LrdPvIIrVesee~--~~seVrQvVvqVpe~k--------------------n------------------------ 244 (2355)
+..+++++...... ..+.....+..++... .
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 00111111111100 0111111111111000 0
Q ss_pred --------------------------CcchhhhHHHHHHHHH---hcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEe
Q psy8497 245 --------------------------PSLRYVDEEKKLVQLL---SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYL 295 (2355)
Q Consensus 245 --------------------------~sLt~lsKkeaLLqLL---erl~kgRVLVFSQTRKmAEiLADyLrErGIKVarL 295 (2355)
.......+...|..++ ......++||||+++.+++.|+.+|...++.+.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 0000111222233333 22345799999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhCCCc---cEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCcc--EEEEEEc
Q psy8497 296 SGAQDQKARLASLDSFKRGKV---RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG--LVITIVS 370 (2355)
Q Consensus 296 HGgMSqEERqeILErFRSGEI---dVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkG--kVIVLVS 370 (2355)
||+|+..+|..+++.|+++.. .|||+|.++++||||+.+++||++|+||||..+.|++||++|+|+.. .|+.|+.
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 999999999999999999865 48999999999999999999999999999999999999999999765 4555566
Q ss_pred ccCHHH
Q psy8497 371 AESLVK 376 (2355)
Q Consensus 371 sdDVEe 376 (2355)
..+.++
T Consensus 527 ~~tiEe 532 (644)
T 1z3i_X 527 TGTIEE 532 (644)
T ss_dssp TTSHHH
T ss_pred CCCHHH
Confidence 665554
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.6e-33 Score=364.44 Aligned_cols=313 Identities=19% Similarity=0.188 Sum_probs=243.4
Q ss_pred HHHHH-HHCCCCCCcHHHHHHHHHHHc----CC--cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHH
Q psy8497 32 IRQGL-QENGFVKESPIQMAAFPYVLN----GY--DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAV 104 (2355)
Q Consensus 32 LLK~L-qa~GF~eLRPYQeEALn~LLS----GR--NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAq 104 (2355)
+.+.+ ..++| +|+|+|.++++.++. ++ ++||++|||+|||++++++++..+. .+.++||||||++|+.
T Consensus 592 ~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~----~g~~vlvlvPt~~La~ 666 (1151)
T 2eyq_A 592 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD----NHKQVAVLVPTTLLAQ 666 (1151)
T ss_dssp HHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT----TTCEEEEECSSHHHHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH----hCCeEEEEechHHHHH
Confidence 44444 55787 579999999999986 55 8999999999999999988877655 3679999999999999
Q ss_pred HHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc
Q psy8497 105 QITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 105 Q~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~ 176 (2355)
|+.+.+.+++... ++.+..+.+...... ....++|+|+||+.|. ..+.+..+++|||||+|++.
T Consensus 667 Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~g-- 738 (1151)
T 2eyq_A 667 QHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFG-- 738 (1151)
T ss_dssp HHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSC--
T ss_pred HHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhcC--
Confidence 9999999887655 677888877543221 1124899999998662 34567899999999999953
Q ss_pred ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHH
Q psy8497 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256 (2355)
Q Consensus 177 GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaL 256 (2355)
.....++..+....++|+|||||.+.........+.+...+..... ....+...+.... .......+
T Consensus 739 ---~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~~~--------~~~i~~~i 805 (1151)
T 2eyq_A 739 ---VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREYD--------SMVVREAI 805 (1151)
T ss_dssp ---HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEECC--------HHHHHHHH
T ss_pred ---hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEecCC--------HHHHHHHH
Confidence 4455666667778899999999988777666555544333322211 1122222222111 11222333
Q ss_pred HHHHhcCCCCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc
Q psy8497 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV 334 (2355)
Q Consensus 257 LqLLerl~kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV 334 (2355)
+..+. ..+++||||+++..++.+++.|... ++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++
T Consensus 806 l~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v 883 (1151)
T 2eyq_A 806 LREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 883 (1151)
T ss_dssp HHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTE
T ss_pred HHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCC
Confidence 33333 3479999999999999999999987 7899999999999999999999999999999999999999999999
Q ss_pred cEEEEecC-CCCHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 335 DLVINLEI-PHDAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 335 DTVIIyDS-P~SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
++||+++. ++++.+|+|++||+||.|+.+.+++++...
T Consensus 884 ~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 884 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999998 579999999999999999999999998654
No 42
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=7.1e-34 Score=364.01 Aligned_cols=348 Identities=15% Similarity=0.131 Sum_probs=237.5
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
+|+|||.+++.+++.. .++||+++||+|||++++.++...+.. ....++|||||+ .|+.||...+.+.+ ++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~--g~~~rvLIVvP~-sLl~Qw~~E~~~~f----~l 225 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS--GAAERVLIIVPE-TLQHQWLVEMLRRF----NL 225 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT--SSCCCEEEECCT-TTHHHHHHHHHHHS----CC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh--CCCCeEEEEeCH-HHHHHHHHHHHHHh----CC
Confidence 7999999999999874 479999999999999988777666553 345589999999 99999998887665 45
Q ss_pred EEEEEECCccc------cCCCCCCcEEEECHHHHHHHHH-hhcccCcCceEEEecccchhcccChH-HHHHHHHHh-CCC
Q psy8497 121 HVDYFIGGTQV------ERPKRPVQIVVGSPGRIKQMIK-LKYLNMDSVRLFIMDEADKLINTGFV-EDITWIYSQ-LPP 191 (2355)
Q Consensus 121 rVVvytGGkq~------rkqirq~DILVTTPErLLDLLd-rr~LdLSkIdLLIVDEAHRLkN~GF~-SrLeeILs~-Lpp 191 (2355)
.+.++.++... .......+|+|+||+.|..... ...+....|++|||||||++.+.... .....++.. ...
T Consensus 226 ~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 226 RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc
Confidence 66666655421 1223347899999998853211 12234567999999999999865421 111222222 224
Q ss_pred CceEEEEEeccChhH----HHHHHH----------------------------hccC-C---------------------
Q psy8497 192 MKQMLVVSATYSHDN----LATLQK----------------------------YMVD-P--------------------- 217 (2355)
Q Consensus 192 nrQILLLSATLS~EI----LElLkK----------------------------fLrd-P--------------------- 217 (2355)
..++|+|||||..+. ...+.. ++.. +
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l 385 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPL 385 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTT
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHH
Confidence 567999999986411 111100 0000 0
Q ss_pred ------------------------------eeeccCCCc---cccccceEEEEecc------------------------
Q psy8497 218 ------------------------------LLIRPEDAT---RPLLGVKQLVALIP------------------------ 240 (2355)
Q Consensus 218 ------------------------------vIIrVesee---~~~seVrQvVvqVp------------------------ 240 (2355)
..++..... .+..........++
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (968)
T 3dmq_A 386 LQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRAR 465 (968)
T ss_dssp GGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTH
T ss_pred HhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHh
Confidence 000000000 00000000000000
Q ss_pred -------------CCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHh-cCCccEEeeCCCCHHHHHH
Q psy8497 241 -------------ECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN-ANFGAEYLSGAQDQKARLA 306 (2355)
Q Consensus 241 -------------e~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrE-rGIKVarLHGgMSqEERqe 306 (2355)
...........+...|..++......++||||+++..++.|+..|.. .|+.+..+||+|+..+|..
T Consensus 466 ~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~ 545 (968)
T 3dmq_A 466 DMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDR 545 (968)
T ss_dssp HHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHH
T ss_pred hhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 00001122234567788888877778999999999999999999995 5999999999999999999
Q ss_pred HHHHHhCCC--ccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhh
Q psy8497 307 SLDSFKRGK--VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384 (2355)
Q Consensus 307 ILErFRSGE--IdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReL 384 (2355)
+++.|++|+ ++|||||+++++|||+|.+++||++|+||++..|+|++||++|.|+.+.|++++........+.+.+..
T Consensus 546 ~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 546 AAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred HHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 999999998 999999999999999999999999999999999999999999999888666665444444444555555
Q ss_pred ccccccccCCCcc
Q psy8497 385 NLDHAFNVGLVPD 397 (2355)
Q Consensus 385 KLKLaLe~eIVPk 397 (2355)
..+.......++.
T Consensus 626 ~~k~~~~~~~~~~ 638 (968)
T 3dmq_A 626 HEGLDAFEHTCPT 638 (968)
T ss_dssp HHTTCCSSSCCSS
T ss_pred HhCCCceecCCCC
Confidence 4444444444443
No 43
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.8e-34 Score=360.38 Aligned_cols=317 Identities=21% Similarity=0.237 Sum_probs=232.7
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQ 105 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ 105 (2355)
+.+.+..++| .|+++|.++++.++.+ .++||++|||+|||++++++++..+.. +.++|||+|+++|+.|
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----g~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----GFQTAFMVPTSILAIQ 432 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----TSCEEEECSCHHHHHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHH
Confidence 5666778999 9999999999999875 589999999999999999999988763 6789999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC
Q psy8497 106 ITDVVRSVGAHVKNLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177 (2355)
Q Consensus 106 ~anwLREFgk~APgLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G 177 (2355)
+.+.+.+++... ++++..++|+...... ...++|+|+||+.|.+ .+.+..+++|||||+|++....
T Consensus 433 ~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 433 HYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH
Confidence 999999998665 7899999998654321 1248999999987633 4567889999999999964221
Q ss_pred hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHH
Q psy8497 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257 (2355)
Q Consensus 178 F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLL 257 (2355)
...+.......++|+||||+.+...............+. ........+.. ..+... ........+.
T Consensus 507 -----r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~--~~p~~r~~i~~--~~~~~~-----~~~~l~~~i~ 572 (780)
T 1gm5_A 507 -----REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVID--EMPPGRKEVQT--MLVPMD-----RVNEVYEFVR 572 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEEC--CCCSSCCCCEE--CCCCSS-----THHHHHHHHH
T ss_pred -----HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeee--ccCCCCcceEE--EEeccc-----hHHHHHHHHH
Confidence 111222334689999999998765543321111111111 11010111111 111111 0111112222
Q ss_pred HHHhcCCCCeEEEEEccc--------ccHHHHHHHHHh---cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q psy8497 258 QLLSQTPFNQCVIFSNYQ--------LRPEVICENLAN---ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA 326 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTR--------KmAEiLADyLrE---rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG 326 (2355)
..+ ....+++|||+.+ ..++.+++.|.. .++.+..+||+|+..+|..+++.|++|+++|||||++++
T Consensus 573 ~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 573 QEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 222 2346899999966 457888888887 478999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEecCCC-CHhHHHHHhhccCCCCCccEEEEEEcccCHH
Q psy8497 327 RGIDAANVDLVINLEIPH-DAATYLHRMGRAGRYGTRGLVITIVSAESLV 375 (2355)
Q Consensus 327 EGLDLPaVDTVIIyDSP~-SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVE 375 (2355)
+|||+|++++||++++|. +...+.|++||+||.|+.+.|++++...+..
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 999999999999999995 7899999999999999999999998743333
No 44
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.2e-32 Score=341.63 Aligned_cols=327 Identities=14% Similarity=0.175 Sum_probs=245.4
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|| .|+|+|..+++.+++|+ |..++||+|||++|++|++.... .+..++||+||++||.|..+|+..++.++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL----~g~~vlVltptreLA~qd~e~~~~l~~~l 151 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL----TGKGVHVVTVNEYLASRDAEQMGKIFEFL 151 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT----TSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 4899 99999999999999998 99999999999999999984332 25679999999999999999999998888
Q ss_pred CCcEEEEEECCccccCC--CCCCcEEEECHHHH-HHHHHhh------cccCcCceEEEecccchhc-ccC----------
Q psy8497 118 KNLHVDYFIGGTQVERP--KRPVQIVVGSPGRI-KQMIKLK------YLNMDSVRLFIMDEADKLI-NTG---------- 177 (2355)
Q Consensus 118 PgLrVVvytGGkq~rkq--irq~DILVTTPErL-LDLLdrr------~LdLSkIdLLIVDEAHRLk-N~G---------- 177 (2355)
++++.+++|+...... ...++|+|+||..| .+++... .+.+..+.++||||||+|+ +..
T Consensus 152 -gl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 152 -GLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp -TCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred -CCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 8999999998643211 12389999999999 6666543 3557889999999999987 553
Q ss_pred -----hHHHHHHHHHhCCC---------CceEE-----------------EEEeccCh---hHHHHHH--Hhcc-C-Cee
Q psy8497 178 -----FVEDITWIYSQLPP---------MKQML-----------------VVSATYSH---DNLATLQ--KYMV-D-PLL 219 (2355)
Q Consensus 178 -----F~SrLeeILs~Lpp---------nrQIL-----------------LLSATLS~---EILElLk--KfLr-d-PvI 219 (2355)
|+..+..++..++. ..|++ ++|||.+. .+...+. .++. + .++
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 77889999999873 67777 88999763 2222222 1121 1 111
Q ss_pred e-----------------------------------ccCCCccccccce------------------------------E
Q psy8497 220 I-----------------------------------RPEDATRPLLGVK------------------------------Q 234 (2355)
Q Consensus 220 I-----------------------------------rVesee~~~seVr------------------------------Q 234 (2355)
+ .+.........+. .
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 1 0000000000000 0
Q ss_pred EEEeccCCCCC---------cchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 235 LVALIPECKNP---------SLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 235 vVvqVpe~kn~---------sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
-+..+|..... +.....+...|...+.. ....+|||||.+++.++.|...|...|+.+..|||.+.+.+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 01223321110 11223445566665543 23458999999999999999999999999999999998888
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCC--------CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAA--------NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLP--------aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
|..+.+.|+.| .|||||+++++|+||+ .+.+||+++.|.++..|+||+||+||.|.+|.++.|++..+.
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 87777666655 6999999999999999 788999999999999999999999999999999999976653
No 45
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5.9e-33 Score=334.29 Aligned_cols=307 Identities=16% Similarity=0.196 Sum_probs=191.1
Q ss_pred CCcHHHHHHHHHHHc----C-CcEEEEccCCchHHHHHHHHHHHHHHhc-----CCCCCeEEEEcccHHHHHHHH-HHHH
Q psy8497 43 KESPIQMAAFPYVLN----G-YDAIVQSKSGTGKSIVFVVAALNKLIKL-----PVQQPQTIILAPTREIAVQIT-DVVR 111 (2355)
Q Consensus 43 eLRPYQeEALn~LLS----G-RNVILAAPTGSGKTLVALIAILerL~ek-----r~qggRVLILVPTRALAqQ~a-nwLR 111 (2355)
.|++||.+++++++. + +++||++|||+|||++++.++...+... ....+++|||||+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 799999999999886 4 5699999999999999765555444321 115688999999999999998 7776
Q ss_pred HHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHH----hhcccCcCceEEEecccchhcccChHHHHHHHHH
Q psy8497 112 SVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIK----LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187 (2355)
Q Consensus 112 EFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLd----rr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs 187 (2355)
.+.. .+..+.++. .....+|+|+||++|..... ...+....+++|||||||++.... ...+..++.
T Consensus 258 ~~~~-----~~~~~~~~~----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~ 327 (590)
T 3h1t_A 258 PFGD-----ARHKIEGGK----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILE 327 (590)
T ss_dssp TTCS-----SEEECCC------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHH
T ss_pred hcch-----hhhhhhccC----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHH
Confidence 6532 233333221 23347899999999877654 234456779999999999987642 245566777
Q ss_pred hCCCCceEEEEEeccChhHHHHHHHhccCCeeec-cCC--CccccccceEEEEeccCC----------------------
Q psy8497 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PED--ATRPLLGVKQLVALIPEC---------------------- 242 (2355)
Q Consensus 188 ~LppnrQILLLSATLS~EILElLkKfLrdPvIIr-Ves--ee~~~seVrQvVvqVpe~---------------------- 242 (2355)
.++ ..++|+|||||.......+..++..+.... ... ..................
T Consensus 328 ~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (590)
T 3h1t_A 328 YFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGE 406 (590)
T ss_dssp HST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------------
T ss_pred hCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccccc
Confidence 775 478999999998654444444333222110 000 000000011110100000
Q ss_pred -CCCcchh----hhH----HHHHHHHHhc-CCCCeEEEEEcccccHHHHHHHHHhcCCc--------cEEeeCCCCHHHH
Q psy8497 243 -KNPSLRY----VDE----EKKLVQLLSQ-TPFNQCVIFSNYQLRPEVICENLANANFG--------AEYLSGAQDQKAR 304 (2355)
Q Consensus 243 -kn~sLt~----lsK----keaLLqLLer-l~kgRVLVFSQTRKmAEiLADyLrErGIK--------VarLHGgMSqEER 304 (2355)
....+.. ... ...|...+.. ....++||||+++..++.|++.|...+.. +..+||.++. +|
T Consensus 407 ~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r 485 (590)
T 3h1t_A 407 YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IG 485 (590)
T ss_dssp --CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HH
T ss_pred CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HH
Confidence 0000000 001 1223333333 34479999999999999999999876543 6788998764 79
Q ss_pred HHHHHHHhCCCcc---EEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCC
Q psy8497 305 LASLDSFKRGKVR---ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361 (2355)
Q Consensus 305 qeILErFRSGEId---VLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQ 361 (2355)
..+++.|++++.. |||+|+++++|||+|.+++||+++.|+++..|+||+||++|.+.
T Consensus 486 ~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 486 KGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999998765 88899999999999999999999999999999999999999874
No 46
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.97 E-value=2.3e-31 Score=334.61 Aligned_cols=326 Identities=14% Similarity=0.163 Sum_probs=222.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|+++|..+++.+++|+ |..++||+|||++|++|++.... .+.+++||+||++||.|..+|+..++.++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l----~g~~vlVltPTreLA~Q~~e~~~~l~~~l- 142 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL----TGKGVHVVTVNDYLAQRDAENNRPLFEFL- 142 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT----TSSCCEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH----cCCcEEEEcCCHHHHHHHHHHHHHHHHhc-
Confidence 676 99999999999999998 99999999999999999985443 25679999999999999999999999888
Q ss_pred CcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhhc------ccCcCceEEEecccchhc-cc------------
Q psy8497 119 NLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLKY------LNMDSVRLFIMDEADKLI-NT------------ 176 (2355)
Q Consensus 119 gLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr~------LdLSkIdLLIVDEAHRLk-N~------------ 176 (2355)
++++.+++|+..... ....++|+|+||..| ++++.... +.+..+.++||||||+|+ +.
T Consensus 143 gl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 143 GLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 899999999865321 112389999999999 78877543 567889999999999988 43
Q ss_pred ---ChHHHHHHHHHhCCC--------------------CceEE------------------------EEEeccCh---hH
Q psy8497 177 ---GFVEDITWIYSQLPP--------------------MKQML------------------------VVSATYSH---DN 206 (2355)
Q Consensus 177 ---GF~SrLeeILs~Lpp--------------------nrQIL------------------------LLSATLS~---EI 206 (2355)
+|+..+..++..++. ..|++ ++|||.+. .+
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 256777788877764 34553 77888643 11
Q ss_pred HHHHH--Hhcc--------CCe-----------------------------eeccCCCccccccce--------------
Q psy8497 207 LATLQ--KYMV--------DPL-----------------------------LIRPEDATRPLLGVK-------------- 233 (2355)
Q Consensus 207 LElLk--KfLr--------dPv-----------------------------IIrVesee~~~seVr-------------- 233 (2355)
...+. .++. +.. .+.+.........+.
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 11110 0110 000 001110000000000
Q ss_pred ----------------EEEEeccCCCC---------CcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHH
Q psy8497 234 ----------------QLVALIPECKN---------PSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLA 286 (2355)
Q Consensus 234 ----------------QvVvqVpe~kn---------~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLr 286 (2355)
.-+..+|.... .+.....+...|...+.. ....+|||||.++..++.|...|.
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 00111221100 011223455666666643 345689999999999999999999
Q ss_pred hcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCc--------------------------------
Q psy8497 287 NANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV-------------------------------- 334 (2355)
Q Consensus 287 ErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaV-------------------------------- 334 (2355)
..|+.+..|||.+...++..+.+.|+.| .|+|||+++++|+||+..
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 540 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAV 540 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHH
Confidence 9999999999999988998888999888 699999999999999973
Q ss_pred -----cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 335 -----DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 335 -----DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
.+||+++.|.+...|.|++||+||.|.+|.++.|++..+.
T Consensus 541 ~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 541 LEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999987664
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.97 E-value=7.1e-31 Score=330.14 Aligned_cols=335 Identities=15% Similarity=0.158 Sum_probs=241.7
Q ss_pred cccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEEccCCchHHHHHHHHHHHHHHh-cCCCCCeEEEE
Q psy8497 20 VLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLN-GYDAIVQSKSGTGKSIVFVVAALNKLIK-LPVQQPQTIIL 96 (2355)
Q Consensus 20 kV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLS-GRNVILAAPTGSGKTLVALIAILerL~e-kr~qggRVLIL 96 (2355)
+..+|..+.+.+ +.+.+...+ ..|.+.|.++|..++. ++++||++|||+|||++ ++++..... ....+..+||+
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEec
Confidence 456799999888 888888888 6888899998887775 56799999999999973 333321111 11125679999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccch-hcc
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADK-LIN 175 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHR-LkN 175 (2355)
+|+++|+.|+.+.+.+......+..+........ ......+|+|+|+++|...+... ..+..+++|||||+|. .++
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld 223 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLA 223 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHH
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccc
Confidence 9999999999887766543322333332221111 12235789999999998777654 3478999999999995 554
Q ss_pred cCh-HHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHH
Q psy8497 176 TGF-VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254 (2355)
Q Consensus 176 ~GF-~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKke 254 (2355)
..+ ...+..+... .+..|+|+||||+... .+..++....++.+.... ..+...+...+.. ........
T Consensus 224 ~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~----~~~~~~l~ 292 (773)
T 2xau_A 224 TDILMGLLKQVVKR-RPDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT---YPVELYYTPEFQR----DYLDSAIR 292 (773)
T ss_dssp HHHHHHHHHHHHHH-CTTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC---CCEEEECCSSCCS----CHHHHHHH
T ss_pred hHHHHHHHHHHHHh-CCCceEEEEeccccHH---HHHHHhcCCCcccccCcc---cceEEEEecCCch----hHHHHHHH
Confidence 332 2334444433 3578999999999643 344455544444443322 1233222211111 11122334
Q ss_pred HHHHHHhcCCCCeEEEEEcccccHHHHHHHHHh-----------cCCccEEeeCCCCHHHHHHHHHHHh-----CCCccE
Q psy8497 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLAN-----------ANFGAEYLSGAQDQKARLASLDSFK-----RGKVRI 318 (2355)
Q Consensus 255 aLLqLLerl~kgRVLVFSQTRKmAEiLADyLrE-----------rGIKVarLHGgMSqEERqeILErFR-----SGEIdV 318 (2355)
.++.++.....+++|||+++++.++.++..|.. .++.+..+||+|+..+|..+++.|. .|..+|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV 372 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV 372 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE
Confidence 555565555668999999999999999999985 5788999999999999999999999 999999
Q ss_pred EEEecccccccCCCCccEEEEecC------------------CCCHhHHHHHhhccCCCCCccEEEEEEccc
Q psy8497 319 LVTTDLAARGIDAANVDLVINLEI------------------PHDAATYLHRMGRAGRYGTRGLVITIVSAE 372 (2355)
Q Consensus 319 LVSTSALGEGLDLPaVDTVIIyDS------------------P~SPqSYIQRIGRAGRiGQkGkVIVLVSsd 372 (2355)
||||+++++|||+|++++||.++. |.+..+|+||+|||||. .+|.+++|+...
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred EEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999777 88999999999999998 889999888644
No 48
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=1e-31 Score=317.06 Aligned_cols=286 Identities=18% Similarity=0.144 Sum_probs=208.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCcE-EEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 40 GFVKESPIQMAAFPYVLNGYDA-IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLSGRNV-ILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
|+.+++|+|. +++.++.++++ |+++|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~------- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALR------- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT-------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhc-------
Confidence 6778999985 79999988886 889999999999999999877663 45789999999999999988774
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHH-hCCCCceEEE
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS-QLPPMKQMLV 197 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs-~LppnrQILL 197 (2355)
++.+........ ........|.++|++.|...+... ..+..+++|||||||++ +..+...+..+.. ...+..|+|+
T Consensus 70 g~~v~~~~~~~~-~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~ 146 (451)
T 2jlq_A 70 GLPIRYQTPAVK-SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIF 146 (451)
T ss_dssp TSCEEECCTTCS-CCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred Cceeeeeecccc-ccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEE
Confidence 223322111111 112223568999999987776543 45788999999999987 3332222222222 2355789999
Q ss_pred EEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEccccc
Q psy8497 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLR 277 (2355)
Q Consensus 198 LSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKm 277 (2355)
||||++...... +...+..+.. ...++.. .. .. +...+... .+++||||++++.
T Consensus 147 ~SAT~~~~~~~~---~~~~~~~~~~-------------~~~~p~~--~~---~~----~~~~l~~~-~~~~lVF~~s~~~ 200 (451)
T 2jlq_A 147 MTATPPGSTDPF---PQSNSPIEDI-------------EREIPER--SW---NT----GFDWITDY-QGKTVWFVPSIKA 200 (451)
T ss_dssp ECSSCTTCCCSS---CCCSSCEEEE-------------ECCCCSS--CC---SS----SCHHHHHC-CSCEEEECSSHHH
T ss_pred EccCCCccchhh---hcCCCceEec-------------CccCCch--hh---HH----HHHHHHhC-CCCEEEEcCCHHH
Confidence 999997532211 1111111111 1111111 00 00 11222222 4599999999999
Q ss_pred HHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEec----------------
Q psy8497 278 PEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLE---------------- 341 (2355)
Q Consensus 278 AEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyD---------------- 341 (2355)
++.++..|...++.+..+|+.+. ..+++.|++|+++|||||+++++|||+|. ++||+++
T Consensus 201 a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~ 275 (451)
T 2jlq_A 201 GNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVI 275 (451)
T ss_dssp HHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceee
Confidence 99999999999999999999764 57899999999999999999999999999 9999988
Q ss_pred ----CCCCHhHHHHHhhccCCCCC-ccEEEEEEc
Q psy8497 342 ----IPHDAATYLHRMGRAGRYGT-RGLVITIVS 370 (2355)
Q Consensus 342 ----SP~SPqSYIQRIGRAGRiGQ-kGkVIVLVS 370 (2355)
.|.+..+|+||+|||||.|. .+.+++|..
T Consensus 276 ~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 276 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 99999999999999999997 788888864
No 49
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=7.6e-32 Score=331.83 Aligned_cols=299 Identities=17% Similarity=0.134 Sum_probs=221.8
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
...+.|+|..+++.+++++++|+++|||+|||++|+++++..+.. .+.++|||+|+++|+.|+.+.+.. +
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa~Qi~~~l~~-------~ 238 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVAAEMEEALRG-------L 238 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTT-------S
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHHHHHHHHhcC-------C
Confidence 367788888789999999999999999999999999999988764 467899999999999999987762 2
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC-CCceEEEEE
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-PMKQMLVVS 199 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp-pnrQILLLS 199 (2355)
.+. +.+............|.++|.+.|...+... ..+..+++|||||||++ +.++...+..++..++ ...|+|+||
T Consensus 239 ~v~-~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~S 315 (618)
T 2whx_A 239 PIR-YQTPAVKSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMT 315 (618)
T ss_dssp CEE-ECCTTSSCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred cee-EecccceeccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEE
Confidence 232 2222211111122457788888877655443 34788999999999998 5566677777777664 678999999
Q ss_pred eccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHH
Q psy8497 200 ATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPE 279 (2355)
Q Consensus 200 ATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAE 279 (2355)
||++.....++. ..+..+.+. ..++... . ..++..+... ..++||||++++.++
T Consensus 316 AT~~~~~~~~~~---~~~~~~~v~-------------~~~~~~~---~------~~ll~~l~~~-~~~~LVF~~s~~~a~ 369 (618)
T 2whx_A 316 ATPPGSTDPFPQ---SNSPIEDIE-------------REIPERS---W------NTGFDWITDY-QGKTVWFVPSIKAGN 369 (618)
T ss_dssp SSCTTCCCSSCC---CSSCEEEEE-------------CCCCSSC---C------SSSCHHHHHC-CSCEEEECSSHHHHH
T ss_pred CCCchhhhhhhc---cCCceeeec-------------ccCCHHH---H------HHHHHHHHhC-CCCEEEEECChhHHH
Confidence 999754321110 011111111 0111110 0 0112222222 469999999999999
Q ss_pred HHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEE--------------------EE
Q psy8497 280 VICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLV--------------------IN 339 (2355)
Q Consensus 280 iLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTV--------------------II 339 (2355)
.+++.|...++.+..+||. +|.++++.|++|+++|||||+++++|||+| +++| |+
T Consensus 370 ~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~ 444 (618)
T 2whx_A 370 DIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILA 444 (618)
T ss_dssp HHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEc
Confidence 9999999999999999984 788899999999999999999999999998 8888 77
Q ss_pred ecCCCCHhHHHHHhhccCCCC-CccEEEEEEc---ccCHHHHHHHHHh
Q psy8497 340 LEIPHDAATYLHRMGRAGRYG-TRGLVITIVS---AESLVKFHSLMGE 383 (2355)
Q Consensus 340 yDSP~SPqSYIQRIGRAGRiG-QkGkVIVLVS---sdDVEeIEsLrRe 383 (2355)
++.|.+..+|+||+||+||.| .++.+++|+. ..+...+..+...
T Consensus 445 ~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~ 492 (618)
T 2whx_A 445 GPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK 492 (618)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH
T ss_pred ccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH
Confidence 888999999999999999996 4899999997 5555555555444
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.97 E-value=1.5e-30 Score=327.94 Aligned_cols=329 Identities=15% Similarity=0.140 Sum_probs=248.1
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 38 ENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 38 a~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|+ .|+++|..+++.+++|+ |..++||+|||++|++|++.... .+..++||+||+.||.|..+|+..++.++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL----~g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL----AGNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT----TTSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH----hCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 3788 99999999999999988 99999999999999999964333 25679999999999999999999999888
Q ss_pred CCcEEEEEECCccccC--CCCCCcEEEECHHHH-HHHHHhh------cccCcCceEEEecccchhc-cc-----------
Q psy8497 118 KNLHVDYFIGGTQVER--PKRPVQIVVGSPGRI-KQMIKLK------YLNMDSVRLFIMDEADKLI-NT----------- 176 (2355)
Q Consensus 118 PgLrVVvytGGkq~rk--qirq~DILVTTPErL-LDLLdrr------~LdLSkIdLLIVDEAHRLk-N~----------- 176 (2355)
++++.+++|+..... ....++|+|+||..| ++++... .+.+..+.++||||||+|+ +.
T Consensus 180 -GLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 180 -GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp -TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred -CCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 899999999864321 112389999999998 7777654 3567889999999999987 32
Q ss_pred ----ChHHHHHHHHHhCC---------CCceEE-----------------EEEeccCh---hHHHHHHH--hcc-C----
Q psy8497 177 ----GFVEDITWIYSQLP---------PMKQML-----------------VVSATYSH---DNLATLQK--YMV-D---- 216 (2355)
Q Consensus 177 ----GF~SrLeeILs~Lp---------pnrQIL-----------------LLSATLS~---EILElLkK--fLr-d---- 216 (2355)
+|+..+..++..++ ...|++ ++|||.+. .+...+.. ++. +
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 47889999999997 678888 88999763 22222221 221 1
Q ss_pred ---CeeeccCCC-c---------------------cccccceEE------------------------------------
Q psy8497 217 ---PLLIRPEDA-T---------------------RPLLGVKQL------------------------------------ 235 (2355)
Q Consensus 217 ---PvIIrVese-e---------------------~~~seVrQv------------------------------------ 235 (2355)
..++.+... . .......+.
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 111111100 0 000000001
Q ss_pred -EEeccCCCC---------CcchhhhHHHHHHHHHhc--CCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHH
Q psy8497 236 -VALIPECKN---------PSLRYVDEEKKLVQLLSQ--TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303 (2355)
Q Consensus 236 -VvqVpe~kn---------~sLt~lsKkeaLLqLLer--l~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEE 303 (2355)
+..+|.... .+.....+...|...+.. ....+|||||.++..++.|...|...|+.+..|||.+...+
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rE 498 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQE 498 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHH
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHH
Confidence 111221100 011122344556555533 23458999999999999999999999999999999998888
Q ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCc-------------------------------------------------
Q psy8497 304 RLASLDSFKRGKVRILVTTDLAARGIDAANV------------------------------------------------- 334 (2355)
Q Consensus 304 RqeILErFRSGEIdVLVSTSALGEGLDLPaV------------------------------------------------- 334 (2355)
+..+.+.|+.| .|+|||+++++|+||+..
T Consensus 499 a~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 576 (922)
T 1nkt_A 499 ATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIE 576 (922)
T ss_dssp HHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 88888888877 699999999999999975
Q ss_pred ---cEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH
Q psy8497 335 ---DLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376 (2355)
Q Consensus 335 ---DTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe 376 (2355)
.+||+++.|.+...|.|++||+||.|.+|.++.|++..+..+
T Consensus 577 ~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 577 AGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp TTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred cCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 599999999999999999999999999999999998776644
No 51
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=3.9e-32 Score=320.47 Aligned_cols=285 Identities=17% Similarity=0.195 Sum_probs=187.7
Q ss_pred HHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC
Q psy8497 54 YVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133 (2355)
Q Consensus 54 ~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk 133 (2355)
++++++++||++|||+|||++|+++++..+.. .+.++|||+||++|+.|+.+.+..+ .+....+.... .
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---~~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~~~-v 72 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR---RRLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAFSA-H 72 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCCCC-C
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---cCCeEEEEcchHHHHHHHHHHHhcC-------CeEEeccccee-c
Confidence 45678999999999999999999999987763 3578999999999999999888744 22222211100 0
Q ss_pred CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHH
Q psy8497 134 PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 134 qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkK 212 (2355)
.....-+-+.+...+...+ .....+..+++|||||+|++ +..+...+..+...+ +...|+|+||||++.....+..
T Consensus 73 ~Tp~~l~~~l~~~~l~~~~-~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~- 149 (440)
T 1yks_A 73 GSGREVIDAMCHATLTYRM-LEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPH- 149 (440)
T ss_dssp CCSSCCEEEEEHHHHHHHH-TSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC-
T ss_pred cCCccceeeecccchhHhh-hCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh-
Confidence 0000112233333332222 22334788999999999998 333322222222222 3578999999999754221110
Q ss_pred hccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCcc
Q psy8497 213 YMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGA 292 (2355)
Q Consensus 213 fLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKV 292 (2355)
. ...+......++...... ++..+... ..++||||++++.++.+++.|...++.+
T Consensus 150 ---~------------~~~~~~~~~~~~~~~~~~---------~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~~~~v 204 (440)
T 1yks_A 150 ---S------------NGEIEDVQTDIPSEPWNT---------GHDWILAD-KRPTAWFLPSIRAANVMAASLRKAGKSV 204 (440)
T ss_dssp ---C------------SSCEEEEECCCCSSCCSS---------SCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCE
T ss_pred ---c------------CCCeeEeeeccChHHHHH---------HHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHcCCCE
Confidence 0 001111111122111000 11112222 4699999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE-------------------ecCCCCHhHHHHHh
Q psy8497 293 EYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN-------------------LEIPHDAATYLHRM 353 (2355)
Q Consensus 293 arLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII-------------------yDSP~SPqSYIQRI 353 (2355)
..+|| .+|..+++.|++|+++|||||+++++|||+| +++||+ ++.|.++.+|+||+
T Consensus 205 ~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~ 279 (440)
T 1yks_A 205 VVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRR 279 (440)
T ss_dssp EECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHH
T ss_pred EEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhc
Confidence 99999 4688999999999999999999999999999 999985 88999999999999
Q ss_pred hccCCC-CCccEEEEEE---cccCHHHHHHHHH
Q psy8497 354 GRAGRY-GTRGLVITIV---SAESLVKFHSLMG 382 (2355)
Q Consensus 354 GRAGRi-GQkGkVIVLV---SsdDVEeIEsLrR 382 (2355)
||+||. |.++.+++|+ ...+...+..+..
T Consensus 280 GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~ 312 (440)
T 1yks_A 280 GRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEA 312 (440)
T ss_dssp TTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred cccCCCCCCCceEEEEeccCChhhhhhhhhhhH
Confidence 999997 6899999996 4555544544443
No 52
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=2.6e-31 Score=330.15 Aligned_cols=302 Identities=19% Similarity=0.224 Sum_probs=209.6
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHH------cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 35 GLQENGFV-----KESPIQM-----AAFPYVL------NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 35 ~Lqa~GF~-----eLRPYQe-----EALn~LL------SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.|...||. .|+++|. ++|+.++ .++++||++|||+|||++|+++++..+.. .+.++|||+|
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---~~~~~lilaP 278 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---KRLRTAVLAP 278 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---TTCCEEEEES
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEcc
Confidence 45556666 8999999 9998887 88999999999999999999999987663 4578999999
Q ss_pred cHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccCh
Q psy8497 99 TREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
|++|+.|+.+.+..+. +. ...+... .......-+.+.+...+...+... ..+..+++|||||+|++ +..+
T Consensus 279 Tr~La~Q~~~~l~~~~-----i~--~~~~~l~-~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~ 348 (673)
T 2wv9_A 279 TRVVAAEMAEALRGLP-----VR--YLTPAVQ-REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPAS 348 (673)
T ss_dssp SHHHHHHHHHHTTTSC-----CE--ECCC----CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHH
T ss_pred HHHHHHHHHHHHhcCC-----ee--eeccccc-ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccH
Confidence 9999999998887542 11 1111100 000111224455666665444433 45788999999999998 2212
Q ss_pred HHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHH
Q psy8497 179 VEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257 (2355)
Q Consensus 179 ~SrLeeILs~L-ppnrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLL 257 (2355)
...+..+...+ +...|+|+||||++..+..+ .. . ...+..+...++..... .++
T Consensus 349 ~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~----~~---------~---~~~i~~v~~~~~~~~~~---------~~l 403 (673)
T 2wv9_A 349 IAARGYIATRVEAGEAAAIFMTATPPGTSDPF----PD---------T---NSPVHDVSSEIPDRAWS---------SGF 403 (673)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS----CC---------C---SSCEEEEECCCCSSCCS---------SCC
T ss_pred HHHHHHHHHhccccCCcEEEEcCCCChhhhhh----cc---------c---CCceEEEeeecCHHHHH---------HHH
Confidence 22222233333 25789999999997542110 00 0 01111111111111000 011
Q ss_pred HHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEE
Q psy8497 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLV 337 (2355)
Q Consensus 258 qLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTV 337 (2355)
..+.. ...++||||++++.++.++..|...++.+..+||. +|..+++.|++|+++|||||+++++|||+| +++|
T Consensus 404 ~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~V 477 (673)
T 2wv9_A 404 EWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRV 477 (673)
T ss_dssp HHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEE
Confidence 22222 35699999999999999999999999999999994 799999999999999999999999999999 9999
Q ss_pred EE--------------------ecCCCCHhHHHHHhhccCCC-CCccEEEEEE---cccCHHHHHHH
Q psy8497 338 IN--------------------LEIPHDAATYLHRMGRAGRY-GTRGLVITIV---SAESLVKFHSL 380 (2355)
Q Consensus 338 II--------------------yDSP~SPqSYIQRIGRAGRi-GQkGkVIVLV---SsdDVEeIEsL 380 (2355)
|+ ++.|.++.+|+||+||+||. |+.|.+++|+ ...+...+..+
T Consensus 478 I~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~i 544 (673)
T 2wv9_A 478 IDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWT 544 (673)
T ss_dssp EECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHH
T ss_pred EECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHH
Confidence 97 56889999999999999998 7899999996 34444333333
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=9.1e-30 Score=299.37 Aligned_cols=268 Identities=19% Similarity=0.185 Sum_probs=187.9
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
++++||++|||+|||++|+++++..+.. .+.++|||+|+++|+.|+.+.+. ++.+..+.|..... ....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~---~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~-~~~~ 70 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK---KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSE-RTGN 70 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC----------CC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCcccc-CCCC
Confidence 6789999999999999999888866553 45789999999999999887765 34555555542211 1112
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHh-CCCCceEEEEEeccChhHHHHHHHhccC
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ-LPPMKQMLVVSATYSHDNLATLQKYMVD 216 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~-LppnrQILLLSATLS~EILElLkKfLrd 216 (2355)
.-+.++|...+...+.. ...+..+++|||||+|++ ...+......+... .+...|+|+||||++..+..
T Consensus 71 ~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~-------- 140 (431)
T 2v6i_A 71 EIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA-------- 140 (431)
T ss_dssp CSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS--------
T ss_pred ceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh--------
Confidence 34667788877665554 445788999999999997 32222333333332 25679999999999853110
Q ss_pred CeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEee
Q psy8497 217 PLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLS 296 (2355)
Q Consensus 217 PvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLH 296 (2355)
.... ...+......++.... ..++..+... .+++||||++++.++.+++.|...++.+..+|
T Consensus 141 -----~~~~---~~~i~~~~~~~~~~~~---------~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh 202 (431)
T 2v6i_A 141 -----FPPS---NSPIIDEETRIPDKAW---------NSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLN 202 (431)
T ss_dssp -----SCCC---SSCCEEEECCCCSSCC---------SSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred -----hcCC---CCceeeccccCCHHHH---------HHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 0000 0111111111111110 1112233332 46899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccE-----------------EEEecCCCCHhHHHHHhhccCCC
Q psy8497 297 GAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDL-----------------VINLEIPHDAATYLHRMGRAGRY 359 (2355)
Q Consensus 297 GgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDT-----------------VIIyDSP~SPqSYIQRIGRAGRi 359 (2355)
|. +|..+++.|++|+++|||||+++++|||+| +.+ ||+++.|.+..+|+||+||+||.
T Consensus 203 g~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 203 RK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp TT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred Cc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCC
Confidence 97 578899999999999999999999999999 544 67889999999999999999998
Q ss_pred CC-ccEEEEEE
Q psy8497 360 GT-RGLVITIV 369 (2355)
Q Consensus 360 GQ-kGkVIVLV 369 (2355)
|. .+.+++|.
T Consensus 278 g~~~~~~~~~~ 288 (431)
T 2v6i_A 278 PEKLGDIYAYS 288 (431)
T ss_dssp TTCCCCEEEEC
T ss_pred CCCCCeEEEEc
Confidence 84 45555555
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.97 E-value=1e-30 Score=309.63 Aligned_cols=274 Identities=20% Similarity=0.213 Sum_probs=191.1
Q ss_pred HHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcc
Q psy8497 51 AFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ 130 (2355)
Q Consensus 51 ALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq 130 (2355)
...++..++++||++|||+|||++|+++++..+.. .+.++|||+|+++|+.|+.+.+.. +.+....+...
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~~~~~ 83 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---QRLRTAVLAPTRVVAAEMAEALRG-------LPVRYQTSAVQ 83 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---TTCCEEEEECSHHHHHHHHHHTTT-------SCEEECC----
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEECchHHHHHHHHHHhcC-------ceEeEEecccc
Confidence 34455667889999999999999999999987763 467899999999999999988762 22222111111
Q ss_pred ccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh-----cccChHHHHHHHHHhCCCCceEEEEEeccChh
Q psy8497 131 VERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL-----INTGFVEDITWIYSQLPPMKQMLVVSATYSHD 205 (2355)
Q Consensus 131 ~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL-----kN~GF~SrLeeILs~LppnrQILLLSATLS~E 205 (2355)
. ......-|.++|...+...+... ..+..+++|||||||++ ...++... +. .....|+|+||||++..
T Consensus 84 ~-~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~---~~--~~~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 84 R-EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT---KV--ELGEAAAIFMTATPPGT 156 (459)
T ss_dssp -----CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH---HH--HTTSCEEEEECSSCTTC
T ss_pred c-CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH---Hh--ccCCccEEEEEcCCCcc
Confidence 0 01112347778888776655443 45788999999999983 32222111 11 23578999999999854
Q ss_pred HHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHH
Q psy8497 206 NLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENL 285 (2355)
Q Consensus 206 ILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyL 285 (2355)
+..+... ..+ +......++...... ++.++... .+++||||++++.++.+++.|
T Consensus 157 ~~~~~~~--~~p--------------i~~~~~~~~~~~~~~---------~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 157 TDPFPDS--NAP--------------IHDLQDEIPDRAWSS---------GYEWITEY-AGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp CCSSCCC--SSC--------------EEEEECCCCSSCCSS---------CCHHHHHC-CSCEEEECSCHHHHHHHHHHH
T ss_pred hhhhccC--CCC--------------eEEecccCCcchhHH---------HHHHHHhc-CCCEEEEeCChHHHHHHHHHH
Confidence 2110000 011 111111111111000 11122222 469999999999999999999
Q ss_pred HhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEE--------------------ecCCCC
Q psy8497 286 ANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN--------------------LEIPHD 345 (2355)
Q Consensus 286 rErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVII--------------------yDSP~S 345 (2355)
...++.+..+|+. +|..+++.|++|.++|||||+++++|||+|+ ++||+ ++.|.+
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 9999999999985 7888999999999999999999999999999 99998 779999
Q ss_pred HhHHHHHhhccCCCCC-ccEEEEEEccc
Q psy8497 346 AATYLHRMGRAGRYGT-RGLVITIVSAE 372 (2355)
Q Consensus 346 PqSYIQRIGRAGRiGQ-kGkVIVLVSsd 372 (2355)
+.+|+||+|||||.|. +|.+++|+...
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999996 89999999764
No 55
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.96 E-value=4.1e-30 Score=319.21 Aligned_cols=276 Identities=16% Similarity=0.178 Sum_probs=207.3
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.++++|.+++..+..++++|+.+|||+|||+++.++++. .+.++|||+|+++|+.|+.+.+.+.. +..+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~~----g~~v 285 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKAH----GIDP 285 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH----SCCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHHh----CCCe
Confidence 556777777777778889999999999999988877764 25589999999999999999887765 3345
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCce--EEEEEe
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ--MLVVSA 200 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQ--ILLLSA 200 (2355)
...+|+... ....+|+|+||++| +....+.+..+++|||||||. .+.++...+..++..++...+ ++++||
T Consensus 286 g~~vG~~~~---~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~llil~SA 358 (666)
T 3o8b_A 286 NIRTGVRTI---TTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGARLVVLATA 358 (666)
T ss_dssp EEECSSCEE---CCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred eEEECcEec---cCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCceEEEECC
Confidence 566666542 34478999999997 455566778899999999975 455677778888888877666 778899
Q ss_pred ccChhHHHHHHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHH
Q psy8497 201 TYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEV 280 (2355)
Q Consensus 201 TLS~EILElLkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEi 280 (2355)
|++.... ...+.+..+.. ............ . . +.....+++||||++++.++.
T Consensus 359 T~~~~i~------~~~p~i~~v~~------~~~~~i~~~~~~----~-~----------l~~~~~~~vLVFv~Tr~~ae~ 411 (666)
T 3o8b_A 359 TPPGSVT------VPHPNIEEVAL------SNTGEIPFYGKA----I-P----------IEAIRGGRHLIFCHSKKKCDE 411 (666)
T ss_dssp SCTTCCC------CCCTTEEEEEC------BSCSSEEETTEE----E-C----------GGGSSSSEEEEECSCHHHHHH
T ss_pred CCCcccc------cCCcceEEEee------cccchhHHHHhh----h-h----------hhhccCCcEEEEeCCHHHHHH
Confidence 9985210 00000000000 000000000000 0 0 122245799999999999999
Q ss_pred HHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEE----------Eec---------
Q psy8497 281 ICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI----------NLE--------- 341 (2355)
Q Consensus 281 LADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVI----------IyD--------- 341 (2355)
+++.|...++.+..+||+|++.+ |.++..+|||||+++++|||++ +++|| +||
T Consensus 412 la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~ 483 (666)
T 3o8b_A 412 LAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET 483 (666)
T ss_dssp HHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE
T ss_pred HHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc
Confidence 99999999999999999999765 4556669999999999999997 99998 566
Q ss_pred --CCCCHhHHHHHhhccCCCCCccEEEEEEcccC
Q psy8497 342 --IPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373 (2355)
Q Consensus 342 --SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdD 373 (2355)
.|.+..+|+||+||+|| |.+|. ++|+...+
T Consensus 484 ~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e 515 (666)
T 3o8b_A 484 TTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGE 515 (666)
T ss_dssp EEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCC
T ss_pred ccCcCCHHHHHHHhccCCC-CCCCE-EEEEecch
Confidence 88999999999999999 99999 88886654
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=4.3e-28 Score=252.60 Aligned_cols=198 Identities=32% Similarity=0.501 Sum_probs=176.7
Q ss_pred cCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 22 ~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.+|+++.+++ +++.|...||..|+++|.++++.++.++++|+.+|||+|||++++++++..+.. ...+.++|||+|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-KKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-TSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc-cCCCeeEEEEeCcH
Confidence 5799999888 999999999999999999999999999999999999999999999999887652 23456899999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhccc
Q psy8497 101 EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176 (2355)
Q Consensus 101 ALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~ 176 (2355)
+|+.|+.+.+.++....+++.+..+.|+.... .....++|+|+||++|...+....+.+..+++|||||||++.+.
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 161 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 161 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhh
Confidence 99999999999998877788899998886543 12345899999999999999887778889999999999999998
Q ss_pred ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeee
Q psy8497 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLI 220 (2355)
Q Consensus 177 GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvII 220 (2355)
+|...+..++..++...|+|++|||++..+...+..++.+|..+
T Consensus 162 ~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 162 DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred CcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999998899999999999999999999999888765
No 57
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.96 E-value=3e-28 Score=303.20 Aligned_cols=283 Identities=16% Similarity=0.184 Sum_probs=208.5
Q ss_pred HHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc
Q psy8497 53 PYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE 132 (2355)
Q Consensus 53 n~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r 132 (2355)
...++++++|+++|||+|||+.++ ..+.. .+..||++|+++|+.|+++.+.+. ++.+.+++|+....
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~al----~~l~~----~~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~i 216 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHAI----QKYFS----AKSGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVT 216 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHHH----HHHHH----SSSEEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEEC
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHH----HHHHh----cCCeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEE
Confidence 344578899999999999997433 33332 234599999999999999999886 56788899887653
Q ss_pred CC--CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC-CCceEEEEEeccChhHHHH
Q psy8497 133 RP--KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-PMKQMLVVSATYSHDNLAT 209 (2355)
Q Consensus 133 kq--irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp-pnrQILLLSATLS~EILEl 209 (2355)
.. .+..+++++|++.+. ....+++|||||+|++.+.++...+..++..++ ...+++++|||.. ....
T Consensus 217 v~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~--~i~~ 286 (677)
T 3rc3_A 217 VQPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID--LVME 286 (677)
T ss_dssp CSTTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH--HHHH
T ss_pred ecCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH--HHHH
Confidence 21 223789999987652 246779999999999999889999998998887 6789999999953 3333
Q ss_pred HHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC
Q psy8497 210 LQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN 289 (2355)
Q Consensus 210 LkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG 289 (2355)
+.........+...... ... . ..... + ..+.... ...||||.+++.++.++..|...+
T Consensus 287 l~~~~~~~~~v~~~~r~---~~l---~-~~~~~----l----------~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g 344 (677)
T 3rc3_A 287 LMYTTGEEVEVRDYKRL---TPI---S-VLDHA----L----------ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRG 344 (677)
T ss_dssp HHHHHTCCEEEEECCCS---SCE---E-ECSSC----C----------CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTT
T ss_pred HHHhcCCceEEEEeeec---chH---H-HHHHH----H----------HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcC
Confidence 33333333332111000 000 0 00000 0 0111122 345888999999999999999999
Q ss_pred CccEEeeCCCCHHHHHHHHHHHhC--CCccEEEEecccccccCCCCccEEEEecC--------------CCCHhHHHHHh
Q psy8497 290 FGAEYLSGAQDQKARLASLDSFKR--GKVRILVTTDLAARGIDAANVDLVINLEI--------------PHDAATYLHRM 353 (2355)
Q Consensus 290 IKVarLHGgMSqEERqeILErFRS--GEIdVLVSTSALGEGLDLPaVDTVIIyDS--------------P~SPqSYIQRI 353 (2355)
+.+..+||+|++.+|..+++.|+. |.++|||||+++++|||+ .+++||+++. |.+..+|+||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 999999999999999999999999 889999999999999999 8999999999 77999999999
Q ss_pred hccCCCCCc---cEEEEEEcccCHHHHHHHHH
Q psy8497 354 GRAGRYGTR---GLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 354 GRAGRiGQk---GkVIVLVSsdDVEeIEsLrR 382 (2355)
|||||.|.. |.|+++ ...+...+..+..
T Consensus 424 GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~ 454 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTM-NHEDLSLLKEILK 454 (677)
T ss_dssp TTBTCTTSSCSSEEEEES-STTHHHHHHHHHH
T ss_pred cCCCCCCCCCCCEEEEEE-ecchHHHHHHHHh
Confidence 999999865 544444 3344445555544
No 58
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=2.1e-28 Score=264.17 Aligned_cols=207 Identities=24% Similarity=0.412 Sum_probs=184.4
Q ss_pred CcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC----CCCC
Q psy8497 17 NIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP----VQQP 91 (2355)
Q Consensus 17 siDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr----~qgg 91 (2355)
.+.++..|+++.+.+ +++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.... ..++
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 103 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC
Confidence 467789999999888 99999999999999999999999999999999999999999999999998887422 3467
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEe
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIM 167 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIV 167 (2355)
++|||+|+++|+.|+.++++++.... ++.+..++|+...... ...++|+|+||++|.+++....+.+..+++|||
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 89999999999999999999987766 7888888888654321 123789999999999999888888899999999
Q ss_pred cccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCC
Q psy8497 168 DEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPED 224 (2355)
Q Consensus 168 DEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVes 224 (2355)
||||++.+.+|...+..++..+++..|++++|||++..+...+..++.++..+.+..
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999999999998887654
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.96 E-value=3.5e-28 Score=260.61 Aligned_cols=210 Identities=47% Similarity=0.725 Sum_probs=177.5
Q ss_pred cccccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCC
Q psy8497 12 KDVLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90 (2355)
Q Consensus 12 k~~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qg 90 (2355)
...+..+.+...|+++.+.+ +++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.. ...+
T Consensus 14 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-~~~~ 92 (230)
T 2oxc_A 14 RTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL-ENLS 92 (230)
T ss_dssp ----------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-TSCS
T ss_pred ccCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-cCCC
Confidence 33455667788999999888 999999999999999999999999999999999999999999999999887753 2346
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEe
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIM 167 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIV 167 (2355)
.++|||+|+++|+.|+.+.++++....+++.+..+.|+..... ....++|+|+||++|.+++....+.+..+++|||
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 7899999999999999999999987777889999999865321 2235899999999999998887777889999999
Q ss_pred cccchhcccC-hHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeecc
Q psy8497 168 DEADKLINTG-FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRP 222 (2355)
Q Consensus 168 DEAHRLkN~G-F~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrV 222 (2355)
||||++.+.+ |...+..++..++...|+|++|||++..+...+..++.+|..+.+
T Consensus 173 DEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 173 DEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999887 899999999999989999999999999888888888888877654
No 60
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.96 E-value=7.8e-28 Score=254.24 Aligned_cols=205 Identities=37% Similarity=0.612 Sum_probs=175.8
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
...+.+|+.+.+.+ +++.|..+||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.. ...+.++|||
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-~~~~~~~lil 88 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALML 88 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-TCCSCCEEEE
T ss_pred CcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc-cCCCceEEEE
Confidence 35567899999988 999999999999999999999999999999999999999999999999887753 2346789999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC---CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP---KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL 173 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq---irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL 173 (2355)
+|+++|+.|+.+.+.++.... ++.+..+.|+...... ...++|+|+||++|...+....+.+..+++|||||||++
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 89 APTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 167 (224)
T ss_dssp CSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred ECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHH
Confidence 999999999999999987665 7888888887654322 233899999999999998887778889999999999999
Q ss_pred cccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCC
Q psy8497 174 INTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPED 224 (2355)
Q Consensus 174 kN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVes 224 (2355)
.+.++...+..++..++...|+|++|||++..+...+..++.+|..+.+..
T Consensus 168 ~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 168 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred hhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999998877654
No 61
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.96 E-value=5.2e-28 Score=256.46 Aligned_cols=204 Identities=29% Similarity=0.472 Sum_probs=177.4
Q ss_pred cccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 20 VLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 20 kV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
+..+|+++.+++ +++.|...||..|+++|.++++.+++++++|+++|||+|||++|+++++..+.. ...+.++|||+|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P 80 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-ERAEVQAVITAP 80 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT-TSCSCCEEEECS
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh-CcCCceEEEEcC
Confidence 346799999888 999999999999999999999999999999999999999999999999987653 234678999999
Q ss_pred cHHHHHHHHHHHHHHhcccC---CcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 99 TREIAVQITDVVRSVGAHVK---NLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 99 TRALAqQ~anwLREFgk~AP---gLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
+++|+.|+.+.++++....+ ++.+..+.|+...... ...++|+|+||++|..++....+.+..+++|||||||
T Consensus 81 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 81 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 160 (219)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH
T ss_pred cHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch
Confidence 99999999999999876653 5778888887654322 2347899999999999988877778899999999999
Q ss_pred hhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccCC
Q psy8497 172 KLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPED 224 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVes 224 (2355)
++.+.++...+..++..++...|+|++|||++..+...+..++.+|..+....
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999988999999999999999999999999998776543
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.96 E-value=4.7e-28 Score=258.90 Aligned_cols=215 Identities=25% Similarity=0.418 Sum_probs=182.7
Q ss_pred hhhccccccCcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc
Q psy8497 8 CARTKDVLSNIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL 86 (2355)
Q Consensus 8 r~rTk~~DSsiDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek 86 (2355)
+.+.+.......+...|+++.+.+ +++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~ 90 (236)
T 2pl3_A 11 RLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRL 90 (236)
T ss_dssp HHHHTTTTCCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHhccccCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhh
Confidence 344444444567788999999988 9999999999999999999999999999999999999999999999999887642
Q ss_pred C---CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEECHHHHHHHHHhh-cccC
Q psy8497 87 P---VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGSPGRIKQMIKLK-YLNM 159 (2355)
Q Consensus 87 r---~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTTPErLLDLLdrr-~LdL 159 (2355)
. ..+.++|||+|+++|+.|+.+.+++++... ++.+..++|+..... ....++|+|+||++|...+... .+.+
T Consensus 91 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~ 169 (236)
T 2pl3_A 91 QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHA 169 (236)
T ss_dssp TCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCC
T ss_pred cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCccc
Confidence 1 246789999999999999999999997655 688888888765331 1235799999999998887664 4567
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
..+++|||||||++.+++|...+..++..++...|+|+||||++..+..+...++.+|..+.+.
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 8899999999999999999999999999999999999999999999989889999988877654
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=7.1e-28 Score=256.28 Aligned_cols=207 Identities=25% Similarity=0.446 Sum_probs=175.8
Q ss_pred ccccCcccccCccc-CCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc----
Q psy8497 13 DVLSNIDVLFENDV-LIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL---- 86 (2355)
Q Consensus 13 ~~DSsiDkV~SFEe-LlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek---- 86 (2355)
+...-+++...|++ +.+.+ +++.|...||..|+++|.++++.+++++++|+.+|||+|||++|+++++..+...
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 34445677889998 67777 9999999999999999999999999999999999999999999999998877531
Q ss_pred -CCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhcccCcC
Q psy8497 87 -PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKYLNMDS 161 (2355)
Q Consensus 87 -r~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~LdLSk 161 (2355)
...+.++|||+|+++|+.|+.+.++++. ..++.+..++|+....... ..++|+|+||++|..++....+.+..
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~ 167 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS--YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRS 167 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC--CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTT
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc--ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCccc
Confidence 1256789999999999999999999985 2367888888876544322 33799999999999998888888899
Q ss_pred ceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeec
Q psy8497 162 VRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR 221 (2355)
Q Consensus 162 IdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIr 221 (2355)
+++|||||||++.+.+|...+..++..++...|+|++|||++..+...+..++.+|..+.
T Consensus 168 ~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 168 ITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999998887764
No 64
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=1.1e-27 Score=258.36 Aligned_cols=204 Identities=35% Similarity=0.570 Sum_probs=174.2
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
.++..+|+++.+++ +++.|..+||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.. ...+.++|||
T Consensus 26 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil 104 (237)
T 3bor_A 26 NEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI-EFKETQALVL 104 (237)
T ss_dssp -CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT-TSCSCCEEEE
T ss_pred CCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-cCCCceEEEE
Confidence 35578899999988 999999999999999999999999999999999999999999999999987653 2346789999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC-----CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK-----RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi-----rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
+|+++|+.|+.+.+++++... ++.+..+.|+....... ..++|+|+||++|.+++....+.+..+++|||||||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 183 (237)
T 3bor_A 105 APTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 183 (237)
T ss_dssp CSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH
T ss_pred ECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch
Confidence 999999999999999997665 67788888876543322 227999999999999998877788899999999999
Q ss_pred hhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 172 KLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
++.+.+|...+..++..++...|+|++|||++..+...+..++.+|..+.+.
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999899999999999999999999999988877653
No 65
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=268.20 Aligned_cols=205 Identities=34% Similarity=0.514 Sum_probs=181.6
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTI 94 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVL 94 (2355)
+..+.+|+++.+.+ +++.|..+||..|+++|.++++.++.+ +++|+++|||+|||++|+++++..+.. ....+++|
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~-~~~~~~~l 166 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCL 166 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT-TSCSCCEE
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc-cCCCceEE
Confidence 34578899999988 999999999999999999999999987 899999999999999999999988763 23456899
Q ss_pred EEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-CCCCcEEEECHHHHHHHHHh-hcccCcCceEEEecccch
Q psy8497 95 ILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-KRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIMDEADK 172 (2355)
Q Consensus 95 ILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-irq~DILVTTPErLLDLLdr-r~LdLSkIdLLIVDEAHR 172 (2355)
||+|+++|+.|+.+.++.+....+++.+.++.|+...... ...++|||+||++|.+++.. ..+.+..+.+|||||||+
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 9999999999999999999888778899999888765433 34489999999999998865 566788999999999999
Q ss_pred hcc-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeeccC
Q psy8497 173 LIN-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPE 223 (2355)
Q Consensus 173 LkN-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrVe 223 (2355)
|.+ .+|...+..++..++...|+|++|||++..+..++..++.+|..+.+.
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 997 688899999999999999999999999999999999999999887654
No 66
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=7.3e-28 Score=260.39 Aligned_cols=215 Identities=24% Similarity=0.444 Sum_probs=178.4
Q ss_pred CcccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC--------
Q psy8497 17 NIDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP-------- 87 (2355)
Q Consensus 17 siDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr-------- 87 (2355)
..++...|+++.+.+ +++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+....
T Consensus 18 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 97 (253)
T 1wrb_A 18 ATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 97 (253)
T ss_dssp CCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------C
T ss_pred CCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccc
Confidence 334678899999888 99999999999999999999999999999999999999999999999998876422
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCce
Q psy8497 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVR 163 (2355)
Q Consensus 88 ~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkId 163 (2355)
..++++|||+|+++|+.|+.+.++++.... ++.+..+.|+..... ....++|+|+||++|.+++....+.+..++
T Consensus 98 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 98 TAYPKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 234689999999999999999999987665 678888888765432 123479999999999999988777888999
Q ss_pred EEEecccchhcccChHHHHHHHHHhC--CC--CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccc
Q psy8497 164 LFIMDEADKLINTGFVEDITWIYSQL--PP--MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGV 232 (2355)
Q Consensus 164 LLIVDEAHRLkN~GF~SrLeeILs~L--pp--nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seV 232 (2355)
+|||||||++.+.+|...+..++..+ +. ..|+|+||||++..+..++..++.++..+.+.........+
T Consensus 177 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i 249 (253)
T 1wrb_A 177 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSI 249 (253)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---------
T ss_pred EEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCc
Confidence 99999999999999999999999853 43 67999999999999999999999998888776554433333
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.95 E-value=2.2e-27 Score=246.93 Aligned_cols=197 Identities=34% Similarity=0.563 Sum_probs=172.3
Q ss_pred CcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEccc
Q psy8497 23 ENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAPT 99 (2355)
Q Consensus 23 SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVPT 99 (2355)
+|+++.+.+ +++.|...||..|+++|.++++.+++++++|+.+|||+|||++++++++..+... ...++++|||+|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 688898888 9999999999999999999999999999999999999999999999998887532 2346789999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
++|+.|+.+.+.++... +.+..+.|+...... ...++|+|+||++|..++....+.+..+++|||||||++.+
T Consensus 82 ~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 99999999999998643 677788887643211 12378999999999999888777889999999999999999
Q ss_pred cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeecc
Q psy8497 176 TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRP 222 (2355)
Q Consensus 176 ~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrV 222 (2355)
.++...+..++..++...|+|++|||++......+..++.+|..+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999989999999999999988999999998887654
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1.4e-27 Score=252.32 Aligned_cols=200 Identities=33% Similarity=0.517 Sum_probs=173.9
Q ss_pred ccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 21 LFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 21 V~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
...|+++.+++ +++.|...||..|+++|.++++.+++++++|+++|||+|||++++++++..+.. .....++|||+|+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~Pt 91 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHT 91 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC-CTTCCCEEEECSC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc-cCCCEEEEEEeCC
Confidence 35699999888 999999999999999999999999999999999999999999999999887652 2234589999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC-----CCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 100 RALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq-----irq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
++|+.|+.+.++++....+++.+..+.|+...... ...++|+|+||++|..++....+.+..+++|||||||++.
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 171 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 171 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHh
Confidence 99999999999999887778899999988653211 1236899999999999988877788999999999999998
Q ss_pred c-cChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeec
Q psy8497 175 N-TGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR 221 (2355)
Q Consensus 175 N-~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIr 221 (2355)
+ .++...+..++..++...|+|++|||++......+..++.+|..+.
T Consensus 172 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 172 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 6 4677888889998988999999999999998899999998887664
No 69
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=260.37 Aligned_cols=203 Identities=24% Similarity=0.424 Sum_probs=178.4
Q ss_pred cccccCcccCCcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 18 IDVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 18 iDkV~SFEeLlLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
.....+|+++.+.+ +++.|..+||..|+++|.++++.++.++++|+++|||+|||++|+++++..+... ..+.++|||
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-~~~~~~lil 117 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-PQRLFALVL 117 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-CCSSCEEEE
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-CCCceEEEE
Confidence 34578899999998 9999999999999999999999999999999999999999999999999887742 345679999
Q ss_pred cccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHh-hcccCcCceEEEecccc
Q psy8497 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKL-KYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 97 VPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdr-r~LdLSkIdLLIVDEAH 171 (2355)
+|+++|+.|+.+.++++.... ++.+..++|+..... ....++|+|+||++|.+.+.. ..+.+..+++|||||||
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred eCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 999999999999999987665 778888888764321 123479999999999988876 45668889999999999
Q ss_pred hhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCeeecc
Q psy8497 172 KLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRP 222 (2355)
Q Consensus 172 RLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPvIIrV 222 (2355)
++.+.+|...+..++..++...|+|+||||++..+...+..++.+|..+.+
T Consensus 197 ~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 197 RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999989999999999999999999999999987754
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.95 E-value=7e-27 Score=251.16 Aligned_cols=207 Identities=23% Similarity=0.375 Sum_probs=175.1
Q ss_pred CcccccCcccC----CcHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCC
Q psy8497 17 NIDVLFENDVL----IEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQP 91 (2355)
Q Consensus 17 siDkV~SFEeL----lLkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qgg 91 (2355)
.+.++.+|+++ .+.+ +++.|...||..|+++|.++++.++.++++|+.+|||+|||++|+++++..+......+.
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 99 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF 99 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSC
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCc
Confidence 45678889887 5666 999999999999999999999999999999999999999999999999988875445677
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC-----CCCCCcEEEECHHHHHHHHHhh--cccCcCceE
Q psy8497 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-----PKRPVQIVVGSPGRIKQMIKLK--YLNMDSVRL 164 (2355)
Q Consensus 92 RVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk-----qirq~DILVTTPErLLDLLdrr--~LdLSkIdL 164 (2355)
++|||+|+++|+.|+.+.+++++... ++.+..+.|+..... ....++|+|+||++|..++... .+.+..+++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 89999999999999999999997665 677777776543222 2344899999999999988775 467888999
Q ss_pred EEecccchhcc---cChHHHHHHHHHhC-CCCceEEEEEeccChhHHHHHHHhccCCeeeccCC
Q psy8497 165 FIMDEADKLIN---TGFVEDITWIYSQL-PPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPED 224 (2355)
Q Consensus 165 LIVDEAHRLkN---~GF~SrLeeILs~L-ppnrQILLLSATLS~EILElLkKfLrdPvIIrVes 224 (2355)
|||||||++.+ .+|...+..++..+ +...|+++||||++.++..++..++.+++.+.+..
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999987 46788888887775 45789999999999999999999999998877654
No 71
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.4e-26 Score=252.99 Aligned_cols=196 Identities=24% Similarity=0.422 Sum_probs=165.4
Q ss_pred cCcccCC--cHH-HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC---CCCCeEEE
Q psy8497 22 FENDVLI--EKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP---VQQPQTII 95 (2355)
Q Consensus 22 ~SFEeLl--Lkp-LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr---~qggRVLI 95 (2355)
..|+.+. +.+ +++.|...||..|+++|.++++.++.++++|+++|||+|||++|+++++..+.... ..+.++||
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 3455544 555 99999999999999999999999999999999999999999999999998887422 24678999
Q ss_pred EcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC----CCCCcEEEECHHHHHHHHHhh-cccCcCceEEEeccc
Q psy8497 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPGRIKQMIKLK-YLNMDSVRLFIMDEA 170 (2355)
Q Consensus 96 LVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq----irq~DILVTTPErLLDLLdrr-~LdLSkIdLLIVDEA 170 (2355)
|+|+++|+.|+.+.+++++... ++.+..++|+...... ...++|+|+||++|...+... .+.+..+++||||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999998765 6788888887654321 123789999999998887664 356788999999999
Q ss_pred chhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHhccCCe
Q psy8497 171 DKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPL 218 (2355)
Q Consensus 171 HRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKfLrdPv 218 (2355)
|++.+.+|...+..++..++...|+|+||||++..+..++..++..+.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999988888776543
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.93 E-value=4.4e-25 Score=285.17 Aligned_cols=324 Identities=12% Similarity=0.089 Sum_probs=207.8
Q ss_pred HHHHHHHCC-------CCCCcHHHHHHHHHHHc--------------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCC
Q psy8497 32 IRQGLQENG-------FVKESPIQMAAFPYVLN--------------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90 (2355)
Q Consensus 32 LLK~Lqa~G-------F~eLRPYQeEALn~LLS--------------GRNVILAAPTGSGKTLVALIAILerL~ekr~qg 90 (2355)
++..+..+- ...|+|||.+|++.++. ++++||+++||+|||++++ +++..+. .....
T Consensus 253 ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~-~l~~ll~-~~~~~ 330 (1038)
T 2w00_A 253 LLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSF-KAARLAT-ELDFI 330 (1038)
T ss_dssp HHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHH-HHHHHHT-TCTTC
T ss_pred HHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHH-HHHHHHH-hcCCC
Confidence 777776643 23699999999999875 3679999999999999874 5554443 22334
Q ss_pred CeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCcccc----CC-CCCCcEEEECHHHHHHHHHhhc--ccCcCce
Q psy8497 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE----RP-KRPVQIVVGSPGRIKQMIKLKY--LNMDSVR 163 (2355)
Q Consensus 91 gRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~r----kq-irq~DILVTTPErLLDLLdrr~--LdLSkId 163 (2355)
.++|||||+++|+.|+.+.+..+.... +.+..... .. ....+|+|+||++|..++.... ..+..+.
T Consensus 331 ~rvLvlvpr~eL~~Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~ 403 (1038)
T 2w00_A 331 DKVFFVVDRKDLDYQTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQV 403 (1038)
T ss_dssp CEEEEEECGGGCCHHHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCE
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhcccccc
Confidence 689999999999999999998875321 11211110 00 1347899999999988776432 1345788
Q ss_pred EEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHH----HHHHHhccCCeeeccCC----CccccccceEE
Q psy8497 164 LFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNL----ATLQKYMVDPLLIRPED----ATRPLLGVKQL 235 (2355)
Q Consensus 164 LLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EIL----ElLkKfLrdPvIIrVes----ee~~~seVrQv 235 (2355)
+|||||||++... ..+..+...++ ..++|+|||||..... .....++..+ +..... ......++...
T Consensus 404 lvIiDEAHrs~~~---~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~l~~AI~dg~l~p~~v~ 478 (1038)
T 2w00_A 404 VFIFDECHRSQFG---EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRE-LHSYVITDAIRDEKVLKFKVD 478 (1038)
T ss_dssp EEEEESCCTTHHH---HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEECHHHHHHHTSSCCEEEE
T ss_pred EEEEEccchhcch---HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCe-eEeecHHHHHhCCCcCCeEEE
Confidence 9999999997632 33455666665 5799999999974321 0111111111 110000 00000011100
Q ss_pred EEec---------c-C------C-CCCcchhhhHHHH----HHHHHh-c-------CCCCeEEEEEcccccHHHHHHHHH
Q psy8497 236 VALI---------P-E------C-KNPSLRYVDEEKK----LVQLLS-Q-------TPFNQCVIFSNYQLRPEVICENLA 286 (2355)
Q Consensus 236 VvqV---------p-e------~-kn~sLt~lsKkea----LLqLLe-r-------l~kgRVLVFSQTRKmAEiLADyLr 286 (2355)
+..+ . . . ....+........ ++..+. . ....++||||.++..|..++..|.
T Consensus 479 y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~ 558 (1038)
T 2w00_A 479 YNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFK 558 (1038)
T ss_dssp ECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHH
T ss_pred EEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHH
Confidence 0000 0 0 0 0000111111122 222221 1 123589999999999999999998
Q ss_pred hcC------------CccE-EeeCC----------C----------CH-----------------------------HHH
Q psy8497 287 NAN------------FGAE-YLSGA----------Q----------DQ-----------------------------KAR 304 (2355)
Q Consensus 287 ErG------------IKVa-rLHGg----------M----------Sq-----------------------------EER 304 (2355)
..+ +++. .+|+. | ++ .+|
T Consensus 559 ~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R 638 (1038)
T 2w00_A 559 RLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYY 638 (1038)
T ss_dssp HHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHH
T ss_pred hhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHH
Confidence 754 4554 44542 2 22 148
Q ss_pred HHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCc----cEEEEEEc
Q psy8497 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR----GLVITIVS 370 (2355)
Q Consensus 305 qeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQk----GkVIVLVS 370 (2355)
..++++|++++++|||+|+++.+|+|+|.+ .|+++|.|.+.+.|+|++||++|.+.. |.++.|+.
T Consensus 639 ~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 639 RDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 889999999999999999999999999999 677899999999999999999998743 55555554
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.93 E-value=8e-24 Score=263.58 Aligned_cols=327 Identities=14% Similarity=0.162 Sum_probs=229.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .+++.|.-+.-.|.+|+ |..+.||.|||+++.+|++.... .+..+.||+|+..||.|-.+|+..+..++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL----~G~~vhVvT~ndyLA~rdae~m~~l~~~L- 143 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL----IGKGVHLVTVNDYLARRDALWMGPVYLFL- 143 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT----TSSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh----cCCceEEEeccHHHHHhHHHHHHHHHHHh-
Confidence 676 89999999999888887 99999999999999999874333 26779999999999999999999999888
Q ss_pred CcEEEEEECCc------------------------------------------------cccCCC----CCCcEEEECHH
Q psy8497 119 NLHVDYFIGGT------------------------------------------------QVERPK----RPVQIVVGSPG 146 (2355)
Q Consensus 119 gLrVVvytGGk------------------------------------------------q~rkqi----rq~DILVTTPE 146 (2355)
++.|.+++... ...... -.++|+++|..
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~ 223 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNN 223 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHH
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCc
Confidence 99999988721 000000 01899999987
Q ss_pred HHH-HHHHhh------cccCcCceEEEecccchhc-ccC---------------hHHHHHHHHHhCC-------------
Q psy8497 147 RIK-QMIKLK------YLNMDSVRLFIMDEADKLI-NTG---------------FVEDITWIYSQLP------------- 190 (2355)
Q Consensus 147 rLL-DLLdrr------~LdLSkIdLLIVDEAHRLk-N~G---------------F~SrLeeILs~Lp------------- 190 (2355)
-|- ++|... ..-.+.+.+.||||++.++ +.. .+..+..++..+.
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 653 455432 2234678899999999753 110 1111111111110
Q ss_pred -------------------------------------------C------------------------------------
Q psy8497 191 -------------------------------------------P------------------------------------ 191 (2355)
Q Consensus 191 -------------------------------------------p------------------------------------ 191 (2355)
.
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence 0
Q ss_pred -------------------------CceEEEEEeccChhHHHHHHHhccCCeeeccCCCccccccceE-EEEeccCCCCC
Q psy8497 192 -------------------------MKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQ-LVALIPECKNP 245 (2355)
Q Consensus 192 -------------------------nrQILLLSATLS~EILElLkKfLrdPvIIrVesee~~~seVrQ-vVvqVpe~kn~ 245 (2355)
..++.+||+|+..+..++...|-. .++ .++... +...+.+ ...+
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l-~vv-~IPtnk-p~~R~d~~d~vy------- 453 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM-EVV-VIPTHK-PMIRKDHDDLVF------- 453 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC-CEE-ECCCSS-CCCCEECCCEEE-------
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC-eEE-EECCCC-CcceeecCcEEE-------
Confidence 014567777777655444433322 222 222111 1111111 0111
Q ss_pred cchhhhHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec
Q psy8497 246 SLRYVDEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323 (2355)
Q Consensus 246 sLt~lsKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS 323 (2355)
.....+...|+..+... ...+|||||.+++.++.|+..|...|+.+..|||++...++..+...|+.| .|||||+
T Consensus 454 -~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATd 530 (822)
T 3jux_A 454 -RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATN 530 (822)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEET
T ss_pred -ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcc
Confidence 11224555666655432 346899999999999999999999999999999997777776667777666 6999999
Q ss_pred ccccccCCC--------CccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHH-------HHHHHHhhcc
Q psy8497 324 LAARGIDAA--------NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK-------FHSLMGEINL 386 (2355)
Q Consensus 324 ALGEGLDLP--------aVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEe-------IEsLrReLKL 386 (2355)
++++|+||+ ...+||+++.|.++..|+|++||+||.|.+|.+++|++..+..+ +..++..+++
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~ 608 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSC
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCC
Confidence 999999998 56799999999999999999999999999999999998877443 4455555443
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.92 E-value=3.7e-24 Score=265.46 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=116.7
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC--
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI-- 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS-- 342 (2355)
..++||||+++.+++.|+++|...|+.+.++||+|++.+|..+++.|+.|.++|||||+++++|||+|.+++||+++.
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADK 518 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTS
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcc
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH-----hhccccccccCCCccchhhhhhhHHHHHHHHH
Q psy8497 343 ---PHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG-----EINLDHAFNVGLVPDNLTGDQINWTQRVQTLL 414 (2355)
Q Consensus 343 ---P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR-----eLKLKLaLe~eIVPkgLlKeqiDw~~~LERIL 414 (2355)
|.++.+|+||+|||||. ..|.+++|+...+..+...+.. .....+.....++|..+.+...+... .
T Consensus 519 ~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~p~~~~~~i~~~~~-~---- 592 (664)
T 1c4o_A 519 EGFLRSERSLIQTIGRAARN-ARGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIR-P---- 592 (664)
T ss_dssp CSGGGSHHHHHHHHGGGTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC---------------
T ss_pred cCCCCCHHHHHHHHCccCcC-CCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHhh-h----
Confidence 88999999999999997 4799999998887766555432 23333444455566655554432221 0
Q ss_pred hCCccHHHHHHHHHHHHHHHHHHhhcCCccCCCChhhhhcccccccCcccccccccccc
Q psy8497 415 AKPLDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEE 473 (2355)
Q Consensus 415 KnPLdeeqErEELEQLeeElkKIEneLkeLga~~kEaaeKe~~KeAakWrdddGQlEEE 473 (2355)
... .. ..... .....++++.+..+...|.++...+.++.++.+++...+++..
T Consensus 593 ~~~-~~---~~~~~--~~~~~~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~ 645 (664)
T 1c4o_A 593 EGY-EE---APLEA--DLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEAR 645 (664)
T ss_dssp -----------------------------------------------------------
T ss_pred hhc-ch---hhhhh--hcCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 000 00 00000 1122344555666777788888888889999988887666543
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.89 E-value=8.1e-23 Score=253.45 Aligned_cols=203 Identities=14% Similarity=0.168 Sum_probs=135.9
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecC--
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEI-- 342 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDS-- 342 (2355)
..++||||+++.+++.|+++|...|+.+.++||+|++.+|..+++.|+.|.++|||||+++++|||+|.+++||+++.
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~ 524 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK 524 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCccc
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH-----hhccccccccCCCccchhhhhhhHHHHHHHHH
Q psy8497 343 ---PHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG-----EINLDHAFNVGLVPDNLTGDQINWTQRVQTLL 414 (2355)
Q Consensus 343 ---P~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR-----eLKLKLaLe~eIVPkgLlKeqiDw~~~LERIL 414 (2355)
|.++..|+||+|||||. ..|.+++|+...+..+...+.. .....+.....++|..+.+...+... .....
T Consensus 525 ~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~~~~i~~~~~-~~~~~ 602 (661)
T 2d7d_A 525 EGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIR-ATVAA 602 (661)
T ss_dssp CTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC-------------
T ss_pred ccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhhHHHHHHh-hcccc
Confidence 88999999999999997 7899999998877766544422 22233333444555554444432221 00000
Q ss_pred hCCcc-HHHHHHHHHHHHHHHHHHhhcCCccCCCChhhhhcccccccCcccccccccc
Q psy8497 415 AKPLD-QAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSE 471 (2355)
Q Consensus 415 KnPLd-eeqErEELEQLeeElkKIEneLkeLga~~kEaaeKe~~KeAakWrdddGQlE 471 (2355)
..... ......... .....++.+.+..+...|.++...+.|+.++.+++....++
T Consensus 603 ~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~ 658 (661)
T 2d7d_A 603 EDKAEYKTKAAPKLS--KMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELK 658 (661)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC----
T ss_pred ccccccchhhhhhhh--hCCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 00000 000000000 00111222333334445666677777888888877665543
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=1.7e-20 Score=237.11 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=109.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 39 NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 39 ~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+|+ .|+++|..+++.+++|+ |..+.||+|||++++++++.... .+..++||+||+.||.|..+|+..++.++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL----~G~qv~VvTPTreLA~Qdae~m~~l~~~l- 147 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL----TGKGVHVVTVNDYLARRDAEWMGPVYRGL- 147 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT----TCSCCEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH----hCCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 899 99999999999999998 99999999999999999964333 25679999999999999999999999888
Q ss_pred CcEEEEEECCcccc--CCCCCCcEEEECHHHH-HHHHHhhc------ccCc---CceEEEecccchhc
Q psy8497 119 NLHVDYFIGGTQVE--RPKRPVQIVVGSPGRI-KQMIKLKY------LNMD---SVRLFIMDEADKLI 174 (2355)
Q Consensus 119 gLrVVvytGGkq~r--kqirq~DILVTTPErL-LDLLdrr~------LdLS---kIdLLIVDEAHRLk 174 (2355)
++++.+++|+.... .....++|+|+||..| ++++.... +.+. .+.++||||+|.++
T Consensus 148 GLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred CCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 89999999986432 1122389999999999 78887653 4566 89999999999876
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.86 E-value=3.9e-21 Score=197.93 Aligned_cols=153 Identities=29% Similarity=0.504 Sum_probs=137.1
Q ss_pred cccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHH
Q psy8497 229 LLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASL 308 (2355)
Q Consensus 229 ~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeIL 308 (2355)
...+.+.+..++.. .+...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..++
T Consensus 7 ~~~i~~~~~~~~~~--------~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 78 (163)
T 2hjv_A 7 TRNIEHAVIQVREE--------NKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVM 78 (163)
T ss_dssp CCCEEEEEEECCGG--------GHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred cccceEEEEECChH--------HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 34466666666543 3667777777776777999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 309 DSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 309 ErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
+.|++|.++|||||+++++|||+|.+++||++++|+++..|+||+||+||.|+++.+++|+...+...+..+.+.++.++
T Consensus 79 ~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 158 (163)
T 2hjv_A 79 NEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEI 158 (163)
T ss_dssp HHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCC
T ss_pred HHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888887766554
Q ss_pred c
Q psy8497 389 A 389 (2355)
Q Consensus 389 a 389 (2355)
.
T Consensus 159 ~ 159 (163)
T 2hjv_A 159 Q 159 (163)
T ss_dssp E
T ss_pred C
Confidence 3
No 78
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=196.53 Aligned_cols=154 Identities=27% Similarity=0.528 Sum_probs=134.3
Q ss_pred cccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHH
Q psy8497 229 LLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASL 308 (2355)
Q Consensus 229 ~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeIL 308 (2355)
...+.+.+..++.. ..+...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..++
T Consensus 5 ~~~i~q~~~~~~~~-------~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~ 77 (175)
T 2rb4_A 5 LNNIRQYYVLCEHR-------KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASII 77 (175)
T ss_dssp BCCEEEEEEECSSH-------HHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHH
T ss_pred cCCceEEEEEcCCh-------HhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 34566777666543 23667788888877778999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccEEEEecccccccCCCCccEEEEecCC------CCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHH
Q psy8497 309 DSFKRGKVRILVTTDLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMG 382 (2355)
Q Consensus 309 ErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP------~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrR 382 (2355)
+.|++|.++|||||+++++|||+|.+++||++|.| .++..|+||+||+||.|+.|.+++|+...+...+..+.+
T Consensus 78 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~ 157 (175)
T 2rb4_A 78 QRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQD 157 (175)
T ss_dssp HHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHH
T ss_pred HHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHH
Confidence 99999999999999999999999999999999999 899999999999999999999999999999888888888
Q ss_pred hhccccc
Q psy8497 383 EINLDHA 389 (2355)
Q Consensus 383 eLKLKLa 389 (2355)
.++..+.
T Consensus 158 ~~~~~~~ 164 (175)
T 2rb4_A 158 HFNSSIK 164 (175)
T ss_dssp HHTCCCE
T ss_pred HhcCccc
Confidence 7766554
No 79
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.85 E-value=6.3e-21 Score=203.33 Aligned_cols=165 Identities=26% Similarity=0.405 Sum_probs=126.3
Q ss_pred HHHhccCCeeeccCCCccccccceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcC
Q psy8497 210 LQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN 289 (2355)
Q Consensus 210 LkKfLrdPvIIrVesee~~~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErG 289 (2355)
.+.++.+|..+.+.........+.+.+..++.. .+...|..++.... .++||||+++..++.|+..|...+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~--------~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g 78 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEE--------AKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKG 78 (191)
T ss_dssp --------------------CCSEEEEEECCGG--------GHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChH--------HHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcC
Confidence 346777888887776666667788887776543 46677888877653 589999999999999999999999
Q ss_pred CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEE
Q psy8497 290 FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV 369 (2355)
Q Consensus 290 IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLV 369 (2355)
+.+..+||+|++.+|..+++.|++|.+.|||||+++++|||+|.+++||++|+|+++..|+||+||+||.|+.|.+++|+
T Consensus 79 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~ 158 (191)
T 2p6n_A 79 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFI 158 (191)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEE
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-CHHHHHHHHHh
Q psy8497 370 SAE-SLVKFHSLMGE 383 (2355)
Q Consensus 370 Ssd-DVEeIEsLrRe 383 (2355)
... +...+..+...
T Consensus 159 ~~~~~~~~~~~l~~~ 173 (191)
T 2p6n_A 159 NKACDESVLMDLKAL 173 (191)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHH
Confidence 875 56555555443
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.85 E-value=9.5e-21 Score=195.07 Aligned_cols=153 Identities=31% Similarity=0.493 Sum_probs=131.3
Q ss_pred ceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHH
Q psy8497 232 VKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSF 311 (2355)
Q Consensus 232 VrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErF 311 (2355)
+.+.+..++.. ..+...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..+++.|
T Consensus 4 i~~~~~~~~~~-------~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 76 (165)
T 1fuk_A 4 IKQFYVNVEEE-------EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF 76 (165)
T ss_dssp CEEEEEEEESG-------GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEECCcc-------hhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 45555555433 12667788888877778999999999999999999999999999999999999999999999
Q ss_pred hCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccc
Q psy8497 312 KRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFN 391 (2355)
Q Consensus 312 RSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe 391 (2355)
++|.++|||||+++++|||+|.+++||++|.|+++..|+||+||+||.|+.|.+++|+...+...+..+...+...+...
T Consensus 77 ~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (165)
T 1fuk_A 77 RSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEEL 156 (165)
T ss_dssp HTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEEC
T ss_pred HcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888887766665433
No 81
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=199.24 Aligned_cols=168 Identities=19% Similarity=0.219 Sum_probs=120.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEcccHHHHHH-HHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAPTREIAVQ-ITD 108 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVPTRALAqQ-~an 108 (2355)
+...........|+++|.++++.+++++++||.+|||+|||++++++++..+... .....++|||||+++|+.| +.+
T Consensus 22 ~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 22 VAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp HHHHTCCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHH
T ss_pred hhcccCccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHH
Confidence 4444444555699999999999999999999999999999999999888776532 1336789999999999999 888
Q ss_pred HHHHHhcccCCcEEEEEECCccccCCC----CCCcEEEECHHHHHHHHHhhc------ccCcCceEEEecccchhcccCh
Q psy8497 109 VVRSVGAHVKNLHVDYFIGGTQVERPK----RPVQIVVGSPGRIKQMIKLKY------LNMDSVRLFIMDEADKLINTGF 178 (2355)
Q Consensus 109 wLREFgk~APgLrVVvytGGkq~rkqi----rq~DILVTTPErLLDLLdrr~------LdLSkIdLLIVDEAHRLkN~GF 178 (2355)
++.++... ++.+..+.|+....... ..++|+|+||++|...+.... +.+..+++|||||||++...++
T Consensus 102 ~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~ 179 (216)
T 3b6e_A 102 EFQPFLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAV 179 (216)
T ss_dssp THHHHHTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------C
T ss_pred HHHHHhcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCc
Confidence 88888654 57788888876543321 127899999999988877542 4568899999999999987655
Q ss_pred HHHHH-HHHHhC-------------CCCceEEEEEec
Q psy8497 179 VEDIT-WIYSQL-------------PPMKQMLVVSAT 201 (2355)
Q Consensus 179 ~SrLe-eILs~L-------------ppnrQILLLSAT 201 (2355)
+..+. .++... .+..++|+||||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 180 YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 55443 222221 156899999998
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.84 E-value=1.6e-20 Score=196.06 Aligned_cols=151 Identities=35% Similarity=0.566 Sum_probs=133.0
Q ss_pred cceEEEEeccCCCCCcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHH
Q psy8497 231 GVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310 (2355)
Q Consensus 231 eVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILEr 310 (2355)
.+.+.+..++.. .+...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..+++.
T Consensus 5 ~i~q~~~~~~~~--------~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~ 76 (172)
T 1t5i_A 5 GLQQYYVKLKDN--------EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQ 76 (172)
T ss_dssp CCEEEEEECCGG--------GHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEEECChH--------HHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHH
Confidence 456666665543 466778888887777899999999999999999999999999999999999999999999
Q ss_pred HhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEccc-CHHHHHHHHHhhccccc
Q psy8497 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE-SLVKFHSLMGEINLDHA 389 (2355)
Q Consensus 311 FRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsd-DVEeIEsLrReLKLKLa 389 (2355)
|++|.+.|||||+++++|||+|.+++||++|.|+++..|+||+||+||.|+.+.+++|+... +...+..+...+..++.
T Consensus 77 f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (172)
T 1t5i_A 77 FKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIS 156 (172)
T ss_dssp HHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEE
T ss_pred HHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999865 45566667666555543
No 83
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.83 E-value=5.7e-20 Score=222.59 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEE--EecccccccCC
Q psy8497 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV--TTDLAARGIDA 331 (2355)
Q Consensus 254 eaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLV--STSALGEGLDL 331 (2355)
..|..++.. ..+++|||+++...++.+.+.|.. + ..++++.. .+|..+++.|+.+. .||+ +|..+.+|||+
T Consensus 374 ~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 374 ILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred HHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 444455544 456999999999999999988865 2 24555553 46889999999864 5776 78999999999
Q ss_pred CC----ccEEEEecCCCC-H-----------------------------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 332 AN----VDLVINLEIPHD-A-----------------------------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 332 Pa----VDTVIIyDSP~S-P-----------------------------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
|+ +++||+++.|+. + ..+.|++||+.|...+.-+|++++.
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 97 899999999972 1 2356999999997555555656543
No 84
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.83 E-value=6.1e-20 Score=197.67 Aligned_cols=142 Identities=30% Similarity=0.464 Sum_probs=129.6
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccC
Q psy8497 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGID 330 (2355)
Q Consensus 251 sKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLD 330 (2355)
.+...|..++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||
T Consensus 17 ~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid 96 (212)
T 3eaq_A 17 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLD 96 (212)
T ss_dssp SHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSS
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCC
Confidence 36677777877767789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccccccc
Q psy8497 331 AANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNV 392 (2355)
Q Consensus 331 LPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~ 392 (2355)
+|.+++||+++.|+++..|+||+|||||.|+.|.+++|+...+...+..+.+.++..+....
T Consensus 97 i~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 158 (212)
T 3eaq_A 97 IPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 158 (212)
T ss_dssp CCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECC
T ss_pred CccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecC
Confidence 99999999999999999999999999999999999999999999999998887776665433
No 85
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=196.29 Aligned_cols=149 Identities=30% Similarity=0.501 Sum_probs=118.6
Q ss_pred cccceEEEEeccCCCCCcchhhhHHHHHHHHHhcC-CCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHH
Q psy8497 229 LLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307 (2355)
Q Consensus 229 ~seVrQvVvqVpe~kn~sLt~lsKkeaLLqLLerl-~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeI 307 (2355)
...+.+.+..++.. .+...|..++... ...++||||+++..++.|+..|...++.+..+||+|+..+|..+
T Consensus 17 ~~~i~q~~~~v~~~--------~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~ 88 (185)
T 2jgn_A 17 SENITQKVVWVEES--------DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 88 (185)
T ss_dssp CTTEEEEEEECCGG--------GHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHH
T ss_pred CCCceEEEEEeCcH--------HHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHH
Confidence 45677777776543 3667777777766 45799999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccEEEEecccccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhc
Q psy8497 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 308 LErFRSGEIdVLVSTSALGEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLK 385 (2355)
++.|++|.++|||||+++++|||+|.+++||++|+|+++..|+||+||+||.|+.|.+++|+...+...+..+...+.
T Consensus 89 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 89 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166 (185)
T ss_dssp HHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888777776665443
No 86
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.80 E-value=6.6e-18 Score=204.68 Aligned_cols=309 Identities=13% Similarity=0.117 Sum_probs=197.4
Q ss_pred CCcHHHHHHHHHH----HcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 43 KESPIQMAAFPYV----LNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 43 eLRPYQeEALn~L----LSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
+++|+|.+.+..+ ..++++|+.+|||+|||++|+++++. ...++||++||++|+.|+.+.+..+....
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~- 74 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIREKR- 74 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCCSS-
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhhhc-
Confidence 7999999977654 46889999999999999999999986 25789999999999999999888876555
Q ss_pred CcEEEEEECCcccc-------------------------------------------------------CCCCCCcEEEE
Q psy8497 119 NLHVDYFIGGTQVE-------------------------------------------------------RPKRPVQIVVG 143 (2355)
Q Consensus 119 gLrVVvytGGkq~r-------------------------------------------------------kqirq~DILVT 143 (2355)
+++++++.|..... .....++|||+
T Consensus 75 ~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~ 154 (551)
T 3crv_A 75 NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIAL 154 (551)
T ss_dssp CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEE
T ss_pred CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEe
Confidence 67888877743210 00123699999
Q ss_pred CHHHHHHHHHhhcccC-cCceEEEecccchhcccCh--------------------------------------------
Q psy8497 144 SPGRIKQMIKLKYLNM-DSVRLFIMDEADKLINTGF-------------------------------------------- 178 (2355)
Q Consensus 144 TPErLLDLLdrr~LdL-SkIdLLIVDEAHRLkN~GF-------------------------------------------- 178 (2355)
||..|++...+..+.+ ....+|||||||.|.+ ..
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~ 233 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEK 233 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSS
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999987654443332 4677899999999765 10
Q ss_pred -----------HHHHH----------------------------HHHH----------------------------hCCC
Q psy8497 179 -----------VEDIT----------------------------WIYS----------------------------QLPP 191 (2355)
Q Consensus 179 -----------~SrLe----------------------------eILs----------------------------~Lpp 191 (2355)
...+. .++. .+..
T Consensus 234 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~ 313 (551)
T 3crv_A 234 YIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLND 313 (551)
T ss_dssp CEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGC
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhc
Confidence 00000 0000 0112
Q ss_pred C-ceEEEEEeccChhHHHHHHHhccCC--eee--ccCCCccccccceEEEEeccCCCCCcc-----h-hhhHHHHHHHHH
Q psy8497 192 M-KQMLVVSATYSHDNLATLQKYMVDP--LLI--RPEDATRPLLGVKQLVALIPECKNPSL-----R-YVDEEKKLVQLL 260 (2355)
Q Consensus 192 n-rQILLLSATLS~EILElLkKfLrdP--vII--rVesee~~~seVrQvVvqVpe~kn~sL-----t-~lsKkeaLLqLL 260 (2355)
. ..+|++|||+.+ ...+...+.-+ ... .......+. ..+....++....... . .......|..++
T Consensus 314 ~~~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~ 389 (551)
T 3crv_A 314 NELSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIY 389 (551)
T ss_dssp TTCEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHH
T ss_pred cCceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHH
Confidence 2 578899999885 33333333221 210 000011111 2333333332211111 1 122334455555
Q ss_pred hcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe--cccccccCCC-----C
Q psy8497 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT--DLAARGIDAA-----N 333 (2355)
Q Consensus 261 erl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST--SALGEGLDLP-----a 333 (2355)
... .+++|||+++...++.+.+. .+..+..-..+++ +..+++.|+...-.||++| ....+|||+| .
T Consensus 390 ~~~-~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~ 462 (551)
T 3crv_A 390 FQA-KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSL 462 (551)
T ss_dssp HHC-SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEES
T ss_pred HhC-CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcc
Confidence 544 46999999999999998873 3333332222444 4557778864344799998 6899999999 4
Q ss_pred ccEEEEecCCCC--------------------H----------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 334 VDLVINLEIPHD--------------------A----------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 334 VDTVIIyDSP~S--------------------P----------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
+.+||+...|+. . ..+.|.+||+-|...+.-+|++++.
T Consensus 463 l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 463 ISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp EEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred eeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 789999988862 1 1235999999997666666666654
No 87
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=3.5e-19 Score=196.86 Aligned_cols=153 Identities=17% Similarity=0.151 Sum_probs=122.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
+|++||.+++++++.+.++||++|||+|||+++++++...+.. ..+++|||||+++|+.||.+.+.+++... .+.+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---YEGKILIIVPTTALTTQMADDFVDYRLFS-HAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH---CSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHhcccc-cceE
Confidence 8999999999999988889999999999999998877766553 24589999999999999999999986443 5667
Q ss_pred EEEECCccccC-CCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 123 DYFIGGTQVER-PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 123 VvytGGkq~rk-qirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
..+.++..... .....+|+|+||+.|.... ...+..+++|||||||++.+ ..+..++..+....++|+||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSAT 261 (282)
T 1rif_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGS 261 (282)
T ss_dssp EECSTTCSSTTCCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSS
T ss_pred EEEeCCCcchhhhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCC
Confidence 77777654432 2245889999999874331 22457889999999999874 3666777777778999999999
Q ss_pred cChhH
Q psy8497 202 YSHDN 206 (2355)
Q Consensus 202 LS~EI 206 (2355)
|....
T Consensus 262 p~~~~ 266 (282)
T 1rif_A 262 LRDGK 266 (282)
T ss_dssp CCTTS
T ss_pred CCCcc
Confidence 98653
No 88
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.79 E-value=1.1e-18 Score=199.13 Aligned_cols=142 Identities=30% Similarity=0.458 Sum_probs=126.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 252 EEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 252 KkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
+...|..++......++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+
T Consensus 15 K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi 94 (300)
T 3i32_A 15 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDI 94 (300)
T ss_dssp HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccc
Confidence 56677777776667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccccccccC
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVG 393 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKLaLe~e 393 (2355)
|.+++||+++.|+++..|+||+|||||.|+.|.+++|+...+...+..+.+.++..+.....
T Consensus 95 ~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 95 PQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp CCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred cceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 99999999999999999999999999999999999999999999999998887776654433
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.65 E-value=1.4e-20 Score=195.02 Aligned_cols=136 Identities=32% Similarity=0.517 Sum_probs=122.8
Q ss_pred HHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccCC
Q psy8497 252 EEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA 331 (2355)
Q Consensus 252 KkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLDL 331 (2355)
+...|..++......++||||+++..++.++..|...++.+..+||+|+..+|..+++.|++|.++|||||+++++|||+
T Consensus 17 k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~ 96 (170)
T 2yjt_D 17 KTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDI 96 (170)
Confidence 44556666666666799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhccc
Q psy8497 332 ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLD 387 (2355)
Q Consensus 332 PaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLK 387 (2355)
|.+++||+++.|+++..|+||+||+||.|+.+.+++|+...+...+..+.+.+...
T Consensus 97 ~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 97 PDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 99999999999999999999999999999999999999888777777666544433
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.73 E-value=5e-17 Score=176.05 Aligned_cols=162 Identities=16% Similarity=0.223 Sum_probs=121.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhc-CCCCCeEEEEcccHHHHHHHHHHHHHHhcccC
Q psy8497 40 GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL-PVQQPQTIILAPTREIAVQITDVVRSVGAHVK 118 (2355)
Q Consensus 40 GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ek-r~qggRVLILVPTRALAqQ~anwLREFgk~AP 118 (2355)
....++++|.++++.+..+++++|.+|||+|||+++.++++..+... ......+|+++|+++|+.|+.+.+........
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 34468999999999999999999999999999988887877765532 12245899999999999999888877654433
Q ss_pred CcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchh-cccChH-HHHHHHHHhCCCCceEE
Q psy8497 119 NLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL-INTGFV-EDITWIYSQLPPMKQML 196 (2355)
Q Consensus 119 gLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRL-kN~GF~-SrLeeILs~LppnrQIL 196 (2355)
+..+........ .......+|+|+||++|.+++.. .+..+++|||||+|++ .+.++. ..+..++... +..|+|
T Consensus 138 ~~~~g~~~~~~~-~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~i 212 (235)
T 3llm_A 138 GKSCGYSVRFES-ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIV 212 (235)
T ss_dssp TSSEEEEETTEE-ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEE
T ss_pred CceEEEeechhh-ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEE
Confidence 444443322221 11123478999999999988865 4788999999999985 555555 4555555555 578999
Q ss_pred EEEeccChhH
Q psy8497 197 VVSATYSHDN 206 (2355)
Q Consensus 197 LLSATLS~EI 206 (2355)
++|||++.+.
T Consensus 213 l~SAT~~~~~ 222 (235)
T 3llm_A 213 LMSATIDTSM 222 (235)
T ss_dssp EEECSSCCHH
T ss_pred EEecCCCHHH
Confidence 9999999765
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.72 E-value=8.1e-18 Score=189.01 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhcC--CCCeEEEEEcccccHHHHHHHHHhc-CCccEEeeCCCCHHHHHHHHHHHhCC-Ccc-EEEEeccc
Q psy8497 251 DEEKKLVQLLSQT--PFNQCVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRG-KVR-ILVTTDLA 325 (2355)
Q Consensus 251 sKkeaLLqLLerl--~kgRVLVFSQTRKmAEiLADyLrEr-GIKVarLHGgMSqEERqeILErFRSG-EId-VLVSTSAL 325 (2355)
.+...|..++... ...++||||+++.+++.|..+|... |+.+.++||+++..+|..+++.|+++ .+. +||+|+++
T Consensus 96 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~ 175 (271)
T 1z5z_A 96 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG 175 (271)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhh
Confidence 4556666666544 4579999999999999999999985 99999999999999999999999988 677 78999999
Q ss_pred ccccCCCCccEEEEecCCCCHhHHHHHhhccCCCCCccE--EEEEEcccCHHH
Q psy8497 326 ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL--VITIVSAESLVK 376 (2355)
Q Consensus 326 GEGLDLPaVDTVIIyDSP~SPqSYIQRIGRAGRiGQkGk--VIVLVSsdDVEe 376 (2355)
++||||+.+++||+||+||||..++||+||++|+|+... ++.|+...+.++
T Consensus 176 g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 176 GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp CCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred cCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 999999999999999999999999999999999997654 556666666554
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.70 E-value=1.1e-16 Score=175.42 Aligned_cols=139 Identities=21% Similarity=0.184 Sum_probs=108.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE-
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH- 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr- 121 (2355)
.|+++|.+++..++.+.++||++|||+|||++++.++... +.++|||||+++|+.||.+.+.+| ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~-----~~~~ 160 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF-----GEEY 160 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGGG-----CGGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhC-----CCCe
Confidence 7899999999999998889999999999999887665432 567999999999999999988874 456
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
+..+.|+... ..+|+|+||+.+...... + ...+++|||||+|++.+..+. .++..++ ..++|+||||
T Consensus 161 v~~~~g~~~~-----~~~i~v~T~~~l~~~~~~--~-~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LSAT 227 (237)
T 2fz4_A 161 VGEFSGRIKE-----LKPLTVSTYDSAYVNAEK--L-GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLTAT 227 (237)
T ss_dssp EEEESSSCBC-----CCSEEEEEHHHHHHTHHH--H-TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEEES
T ss_pred EEEEeCCCCC-----cCCEEEEeHHHHHhhHHH--h-cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEecC
Confidence 7777776543 367999999998655432 1 245889999999999876543 3445554 6789999999
Q ss_pred cChhH
Q psy8497 202 YSHDN 206 (2355)
Q Consensus 202 LS~EI 206 (2355)
|....
T Consensus 228 p~r~D 232 (237)
T 2fz4_A 228 FERED 232 (237)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 98543
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.66 E-value=3.5e-15 Score=184.60 Aligned_cols=316 Identities=13% Similarity=0.125 Sum_probs=190.3
Q ss_pred CCCcHHHHHHHHH----HHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhccc
Q psy8497 42 VKESPIQMAAFPY----VLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV 117 (2355)
Q Consensus 42 ~eLRPYQeEALn~----LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~A 117 (2355)
.+|+|.|.+.+.. +..++++|+.+|||+|||++++++++..+.. .+.++||++||++|+.|+.+.+..+....
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---~~~kvli~t~T~~l~~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---RKLKVLYLVRTNSQEEQVIKELRSLSSTM 78 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---cCCeEEEECCCHHHHHHHHHHHHHHhhcc
Confidence 3689999998864 4568999999999999999999999988763 35789999999999999999998886543
Q ss_pred CCcEEEEEECCccccC------------------------------------------C---------------------
Q psy8497 118 KNLHVDYFIGGTQVER------------------------------------------P--------------------- 134 (2355)
Q Consensus 118 PgLrVVvytGGkq~rk------------------------------------------q--------------------- 134 (2355)
.++++++.|....-. .
T Consensus 79 -~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~ 157 (620)
T 4a15_A 79 -KIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDY 157 (620)
T ss_dssp -CCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHH
T ss_pred -CeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHH
Confidence 566665554321000 0
Q ss_pred ---------------CCCCcEEEECHHHHHHHHHhhc----c-cCcCceEEEecccchhccc------------------
Q psy8497 135 ---------------KRPVQIVVGSPGRIKQMIKLKY----L-NMDSVRLFIMDEADKLINT------------------ 176 (2355)
Q Consensus 135 ---------------irq~DILVTTPErLLDLLdrr~----L-dLSkIdLLIVDEAHRLkN~------------------ 176 (2355)
...++|||++|..|++..-+.. + ....-.+|||||||.|.+.
T Consensus 158 ~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~ 237 (620)
T 4a15_A 158 GERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRAD 237 (620)
T ss_dssp HHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHH
T ss_pred hhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHH
Confidence 0017899999998765443221 1 1234568999999997431
Q ss_pred --------Ch----------HHH----HHH------------------------------------------HHH-----
Q psy8497 177 --------GF----------VED----ITW------------------------------------------IYS----- 187 (2355)
Q Consensus 177 --------GF----------~Sr----Lee------------------------------------------ILs----- 187 (2355)
.+ ... +.. +..
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 317 (620)
T 4a15_A 238 REAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENE 317 (620)
T ss_dssp HHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhh
Confidence 00 000 000 000
Q ss_pred --------------------h---CCC------------------------------CceEEEEEeccChhHHHHHHHhc
Q psy8497 188 --------------------Q---LPP------------------------------MKQMLVVSATYSHDNLATLQKYM 214 (2355)
Q Consensus 188 --------------------~---Lpp------------------------------nrQILLLSATLS~EILElLkKfL 214 (2355)
. ... ...+|++|||+.+ ...+...+
T Consensus 318 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p--~~~~~~~l 395 (620)
T 4a15_A 318 KEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP--FDFYSDIT 395 (620)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS--HHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc--HHHHHHHh
Confidence 0 000 1134788899875 33333323
Q ss_pred cC-CeeeccCCCccccccceEEEEeccCCCC-----CcchhhhHHHHHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhc
Q psy8497 215 VD-PLLIRPEDATRPLLGVKQLVALIPECKN-----PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA 288 (2355)
Q Consensus 215 rd-PvIIrVesee~~~seVrQvVvqVpe~kn-----~sLt~lsKkeaLLqLLerl~kgRVLVFSQTRKmAEiLADyLrEr 288 (2355)
.- ...+.... +...-.+.+........ ...........|..++... .+++|||+++...++.+.+.|..
T Consensus 396 Gl~~~~~~~~s---pf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~- 470 (620)
T 4a15_A 396 GFEIPFKKIGE---IFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTIVYFPSYSLMDRVENRVSF- 470 (620)
T ss_dssp CCCCCEEECCC---CSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHTSSCCS-
T ss_pred CCCceeeecCC---CCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCHHHHHHHHHHHHh-
Confidence 22 11122111 11111122222221111 0101112224455555544 35799999999999999988872
Q ss_pred CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec--ccccccCCCC--ccEEEEecCCCCH------------------
Q psy8497 289 NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD--LAARGIDAAN--VDLVINLEIPHDA------------------ 346 (2355)
Q Consensus 289 GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS--ALGEGLDLPa--VDTVIIyDSP~SP------------------ 346 (2355)
+... ..-+++..++..+++.|+ +.-.||++|. .+.+|||+|. +.+||+...|+.+
T Consensus 471 -~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~ 547 (620)
T 4a15_A 471 -EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGK 547 (620)
T ss_dssp -CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSC
T ss_pred -cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 3323 455566678999999999 8888999985 8999999998 6789999998731
Q ss_pred -----------hHHHHHhhccCCCCCccEEEEEEcc
Q psy8497 347 -----------ATYLHRMGRAGRYGTRGLVITIVSA 371 (2355)
Q Consensus 347 -----------qSYIQRIGRAGRiGQkGkVIVLVSs 371 (2355)
..+.|.+||+-|.-.+.-++++++.
T Consensus 548 ~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 548 GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1236999999997766667777654
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.84 E-value=9.6e-09 Score=120.16 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=90.7
Q ss_pred HHHHHHhcCCCCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccccccC----
Q psy8497 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGID---- 330 (2355)
Q Consensus 255 aLLqLLerl~kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALGEGLD---- 330 (2355)
.|+..+.. ..++||||+++.++++.|.++|..+++++.+++|.....+ .+. .+..+.|.+.|.+++.|+|
T Consensus 116 ~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~~gin~~~~ 189 (328)
T 3hgt_A 116 DLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGINFTKYPIK 189 (328)
T ss_dssp HHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCC
T ss_pred HHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCCCCcCcccc
Confidence 33333333 3569999999999999999999999999999999855432 221 2445566666888888886
Q ss_pred -CCCccEEEEecCCCCHhHH-HHHhhccCCCC----CccEEEEEEcccCHHHHHHHH
Q psy8497 331 -AANVDLVINLEIPHDAATY-LHRMGRAGRYG----TRGLVITIVSAESLVKFHSLM 381 (2355)
Q Consensus 331 -LPaVDTVIIyDSP~SPqSY-IQRIGRAGRiG----QkGkVIVLVSsdDVEeIEsLr 381 (2355)
+..+++||+||++|||+.. +|++-|++|++ ++..|+.++...+++...-..
T Consensus 190 nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 190 SKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp CCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 7899999999999999998 99999999983 467888888888888765554
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.35 E-value=9.3e-07 Score=109.78 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHcCCcEEEEccCCchHHH--HHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 45 SPIQMAAFPYVLNGYDAIVQSKSGTGKSI--VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 45 RPYQeEALn~LLSGRNVILAAPTGSGKTL--VALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.+.|.+++..++.++.+||.+++|+|||. .+++.++..+. ...+.++++++||..++.++.+.+..+.... ++..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--~~~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGKALRQL-PLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC--SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh--hcCCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCH
Confidence 68999999999999999999999999993 44444443321 1235689999999999999888877654433 1110
Q ss_pred EEEECCccccCCCCC-CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 123 DYFIGGTQVERPKRP-VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 123 VvytGGkq~rkqirq-~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
... . ........ ..++-.+|... .+.........+++|||||++++. ...+..++..++...|+|++.-.
T Consensus 228 ~~~-~--~~~~~~~Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 228 EQK-K--RIPEDASTLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp CCC-C--SCSCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHH-h--ccchhhhhhHhhhccCCCch--HHHhccCCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEcch
Confidence 000 0 00000111 12222333321 111111223378899999999543 35667788888888999988754
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.82 E-value=1.8e-05 Score=98.41 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 43 KESPIQMAAFPYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRN-VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
.|.+.|.+|+..++..++ .||.||.|+|||.+.+-.+...+. .+.++|+++||-..+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~----~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK----QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 589999999999987665 799999999999776555444443 3678999999999999988888765
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.75 E-value=0.0002 Score=89.17 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
+..|++.|.+|+..++...-++|.+|.|+|||.+.. .++..+.. ..+.++|+++|+...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHT--SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHH--cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 356899999999999887779999999999997654 44445442 24678999999999999988887764
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.74 E-value=0.00019 Score=85.88 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=80.2
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHc----CC-cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMAAFPYVLN----GY-DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQI 106 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeEALn~LLS----GR-NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~ 106 (2355)
+...+....|..|++-|.+++..++. +. .++|.|+.|+|||.+.. .++..|... ....+++++||...+..+
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~--~~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALIST--GETGIILAAPTHAAKKIL 90 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHT--TCCCEEEEESSHHHHHHH
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhc--CCceEEEecCcHHHHHHH
Confidence 44555667888999999999997653 23 79999999999996544 555555531 124799999999886655
Q ss_pred HHHHHHHhcccCCcEEEEEECCcccc-CCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHH
Q psy8497 107 TDVVRSVGAHVKNLHVDYFIGGTQVE-RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185 (2355)
Q Consensus 107 anwLREFgk~APgLrVVvytGGkq~r-kqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeI 185 (2355)
.+.+. +.+..+..-.... ........+... ....+..+++|||||++.+.. ..+..+
T Consensus 91 ~~~~~--------~~~~T~h~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~iiiDE~~~~~~----~~~~~l 148 (459)
T 3upu_A 91 SKLSG--------KEASTIHSILKINPVTYEENVLFEQK----------EVPDLAKCRVLICDEVSMYDR----KLFKIL 148 (459)
T ss_dssp HHHHS--------SCEEEHHHHHTEEEEECSSCEEEEEC----------SCCCCSSCSEEEESCGGGCCH----HHHHHH
T ss_pred Hhhhc--------cchhhHHHHhccCcccccccchhccc----------ccccccCCCEEEEECchhCCH----HHHHHH
Confidence 54431 1111100000000 000000011110 112345688999999997542 345556
Q ss_pred HHhCCCCceEEEEEe
Q psy8497 186 YSQLPPMKQMLVVSA 200 (2355)
Q Consensus 186 Ls~LppnrQILLLSA 200 (2355)
+..++...+++++.-
T Consensus 149 ~~~~~~~~~~~~vGD 163 (459)
T 3upu_A 149 LSTIPPWCTIIGIGD 163 (459)
T ss_dssp HHHSCTTCEEEEEEC
T ss_pred HHhccCCCEEEEECC
Confidence 666665666666654
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.71 E-value=6.7e-05 Score=93.14 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=81.4
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrV 122 (2355)
.|.+.|.+++..++....++|.++.|+|||.+. ..++..+.. .+.++++++||...+..+.+.+. ..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~~--------~~- 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES---LGLEVGLCAPTGKAARRLGEVTG--------RT- 255 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHT--------SC-
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh---cCCeEEEecCcHHHHHHhHhhhc--------cc-
Confidence 689999999999998888999999999999653 355555553 46789999999998766554321 00
Q ss_pred EEEECCccccCCCCCCcEEEECHHHHHHHH----HhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEE
Q psy8497 123 DYFIGGTQVERPKRPVQIVVGSPGRIKQMI----KLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198 (2355)
Q Consensus 123 VvytGGkq~rkqirq~DILVTTPErLLDLL----drr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLL 198 (2355)
..|...++... .........+++|||||++++.. ..+..++..++...++|++
T Consensus 256 -------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~----~~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 256 -------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGD----ALMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp -------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCCH----HHHHHHHTTSCTTCEEEEE
T ss_pred -------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCCH----HHHHHHHHhCcCCCEEEEE
Confidence 11211111000 00111234678999999997642 4556667777777787776
Q ss_pred Ee
Q psy8497 199 SA 200 (2355)
Q Consensus 199 SA 200 (2355)
.-
T Consensus 313 GD 314 (574)
T 3e1s_A 313 GD 314 (574)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00017 Score=92.78 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=55.9
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
+..|++.|.+|+..++...-++|.||.|+|||.+.... +..|... .+.++|+++|+...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~-i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATI-VYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHH-HHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH-HHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34689999999999988767899999999999765543 3344321 3578999999999999999988875
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.66 E-value=0.002 Score=79.15 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=56.2
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..|++-|.+++. .....++|.|+.|+|||.+.+--+...+........++|+|++|...+.++.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 479999999997 33567999999999999776655555544323344689999999999999999998874
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.53 E-value=0.00018 Score=92.49 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=56.2
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
+..|.+.|.+|+..++...-++|.||.|+|||.+.. .++..|.. ..+.++|+++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHT--TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHH--cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 346899999999999887778999999999997654 44555552 24678999999999998888887764
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.18 E-value=0.0038 Score=74.82 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=76.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC-cE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN-LH 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg-Lr 121 (2355)
.|.|||...+..+...+-++|..+-+.|||.+....++..+.. ..+..+++++|+...+..+.+.+..+....|. +.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~--~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS--SSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 7899999999887655668999999999998766555543332 34668999999999988888888777654443 11
Q ss_pred E-EEEECCccccCCCCCCcEEEE--CHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 122 V-DYFIGGTQVERPKRPVQIVVG--SPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 122 V-VvytGGkq~rkqirq~DILVT--TPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
. ........... .....|.+. ++..+ .-..+.++||||+|.+.+
T Consensus 241 ~~~~~~~~~~I~f-~nGs~i~~lsa~~~sl---------rG~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 241 PGIVEWNKGSIEL-DNGSSIGAYASSPDAV---------RGNSFAMIYIEDCAFIPN 287 (385)
T ss_dssp CCEEEECSSEEEE-TTSCEEEEEECSHHHH---------HTSCCSEEEEESGGGSTT
T ss_pred hhhccCCccEEEe-CCCCEEEEEECCCCCc---------cCCCCCEEEechhhhcCC
Confidence 0 00111111110 111222222 34333 133456999999998775
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.97 E-value=0.0076 Score=74.88 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=77.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCC-cE
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN-LH 121 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APg-Lr 121 (2355)
.|.|+|...+..+...+.++|..+-|.|||.+....++..+.. ..+..+++++|+...+..+.+.++.+....|. +.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~--~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~ 240 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT--SSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh--CCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhc
Confidence 6899999999887556679999999999998766554444442 24568999999999999988888887766653 11
Q ss_pred EEEE-ECCccccCCCCCCcEE--EECHHHHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 122 VDYF-IGGTQVERPKRPVQIV--VGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 122 VVvy-tGGkq~rkqirq~DIL--VTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
.... ........ .....|. ...|..+. -..++++||||+|.+.+
T Consensus 241 ~~~~~~~~~~i~~-~nGs~i~~~s~~~~~lr---------G~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 241 PGIVEWNKGSIEL-DNGSSIGAYASSPDAVR---------GNSFAMIYIEDCAFIPN 287 (592)
T ss_dssp CCEEEECSSEEEE-TTSCEEEEEECCHHHHH---------HSCCSEEEEETGGGCTT
T ss_pred cccccCCccEEEe-cCCCEEEEEeCCCCCcc---------CCCcceEEEehhccCCc
Confidence 1001 11111111 1112222 22344431 12356899999998765
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.59 E-value=0.05 Score=56.52 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHH---------cCCcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 45 SPIQMAAFPYVL---------NGYDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 45 RPYQeEALn~LL---------SGRNVILAAPTGSGKTLVALIAILerL 83 (2355)
.+.|.+++..+. .+..++|.+|+|+|||..+. +++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~-~i~~~~ 62 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV-ATLKAI 62 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH-HHHHHH
Confidence 345666665554 35679999999999996544 444444
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.58 E-value=0.026 Score=69.13 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=62.8
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcE
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQI 140 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DI 140 (2355)
.+|.|+.|+|||.... .++ . ...+|||+|+++++..+.+.+.+... .....+
T Consensus 164 ~~I~G~aGsGKTt~I~-~~~---~-----~~~~lVlTpT~~aa~~l~~kl~~~~~-------------------~~~~~~ 215 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL-SRV---N-----FEEDLILVPGRQAAEMIRRRANASGI-------------------IVATKD 215 (446)
T ss_dssp EEEEECTTSCHHHHHH-HHC---C-----TTTCEEEESCHHHHHHHHHHHTTTSC-------------------CCCCTT
T ss_pred EEEEcCCCCCHHHHHH-HHh---c-----cCCeEEEeCCHHHHHHHHHHhhhcCc-------------------cccccc
Confidence 6889999999995432 221 1 14579999999998776666532210 001123
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
-|.|.+.+ ++.........+++|||||+-.+ .. ..+..++..++. .++|++.-+
T Consensus 216 ~V~T~dsf--L~~~~~~~~~~~d~liiDE~sm~-~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 216 NVRTVDSF--LMNYGKGARCQFKRLFIDEGLML-HT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp TEEEHHHH--HHTTTSSCCCCCSEEEEETGGGS-CH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred eEEEeHHh--hcCCCCCCCCcCCEEEEeCcccC-CH---HHHHHHHHhCCC-CEEEEecCc
Confidence 47898876 23222222234789999999854 33 233334444443 667766654
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.48 E-value=0.032 Score=59.84 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=26.9
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
+.=.++.+|||+|||..++-.+..... .+.+++|+.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH----TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeecc
Confidence 344689999999999665544443333 356799998884
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.46 E-value=0.064 Score=60.00 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=50.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV 138 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~ 138 (2355)
.-+++.++||+|||...+-.+..+.. .+.+++|+.|...- . -...+.... | ....
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~----~g~kVli~~~~~d~----r-~~~~i~srl---------G-------~~~~ 67 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEY----ADVKYLVFKPKIDT----R-SIRNIQSRT---------G-------TSLP 67 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEEECCCG----G-GCSSCCCCC---------C-------CSSC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHh----cCCEEEEEEeccCc----h-HHHHHHHhc---------C-------CCcc
Confidence 34788999999999666544444433 36678888875421 0 000000000 1 1112
Q ss_pred cEEEECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 139 DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
.+.+.+.+.+...+... +....+++|||||++.+.
T Consensus 68 ~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 68 SVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp CEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSC
T ss_pred ccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCc
Confidence 24456666665555432 223457899999999754
No 109
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.43 E-value=0.032 Score=70.85 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=75.8
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcE
Q psy8497 42 VKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121 (2355)
Q Consensus 42 ~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLr 121 (2355)
..|++-|.+++.. ....++|.|..|+|||.+.+.-+...+.+.......+|+|+.|...+.++.+.+..+....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~---- 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA---- 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG----
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc----
Confidence 4799999999875 3567999999999999876655655554333345679999999999999999988874221
Q ss_pred EEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccC--cCceEEEecccch
Q psy8497 122 VDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNM--DSVRLFIMDEADK 172 (2355)
Q Consensus 122 VVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdL--SkIdLLIVDEAHR 172 (2355)
...+-|+|...|...+.+..... ..-.+.|+|+.+.
T Consensus 84 ---------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 84 ---------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp ---------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred ---------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 02367899888764433322111 1223578887663
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.11 E-value=0.063 Score=58.58 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=26.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.++.++||+|||...+-.+..+.. .+.+++++.|..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~----~g~kV~v~k~~~ 46 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI----AKQKIQVFKPEI 46 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEEC-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH----CCCEEEEEEecc
Confidence 688999999999665544444332 467899999874
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.10 E-value=0.035 Score=62.24 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=26.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
.++.++||+|||..++-.+..+.. .+.++||+.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~----~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQF----AKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH----CCCEEEEEEeccC
Confidence 568999999999766655554443 4778999999753
No 112
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.07 E-value=0.18 Score=51.72 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=26.1
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
....+|||||+|.+... ....+..++........+|++|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45679999999987543 234555566665555666655443
No 113
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.93 E-value=0.071 Score=60.57 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=22.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
.++|.+|.|+|||... -.++..+... ....++++.
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~~~~--~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELYKDK--TTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHTTS--CCCEEEEEE
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHhhh--cCeeEEEEe
Confidence 6999999999999554 3444444321 034566664
No 114
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.60 E-value=0.036 Score=69.35 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=55.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
.|++-|.+++.. ....++|.|+.|+|||.+.+--+...+.........+|+|+.|...+.++.+.+....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 589999999975 3567999999999999876655555554323345679999999999999999998874
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.51 E-value=0.16 Score=57.65 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=23.9
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
..++|.+|+|+|||..+- ++...+.. .+.++++|..
T Consensus 38 ~~lll~G~~GtGKT~la~-~i~~~~~~---~~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ-AAGNEAKK---RGYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHH-HHHHHHHH---TTCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH---CCCEEEEEEH
Confidence 579999999999996544 44444442 1455666543
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.37 Score=56.64 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=20.0
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHh
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIK 85 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~e 85 (2355)
..+++|.+|+|+|||.+.- .++..|..
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 3569999999999996544 56666653
No 117
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.24 E-value=0.14 Score=59.13 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHHc----CC---cEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 44 ESPIQMAAFPYVLN----GY---DAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 44 LRPYQeEALn~LLS----GR---NVILAAPTGSGKTLVALIAILerL~ 84 (2355)
++|+|.+++..+.. ++ .+++.||.|+|||.++. .+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 56888888776652 32 38999999999996655 4444444
No 118
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.21 E-value=0.25 Score=55.82 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=18.1
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL 83 (2355)
...++|.+|+|+|||..+- .+...+
T Consensus 44 ~~~vll~G~~G~GKT~l~~-~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR-LVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH-HHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH-HHHHHH
Confidence 3569999999999996543 444444
No 119
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.12 E-value=0.064 Score=61.08 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=27.3
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
=.++.++||+|||...+-.+.++. ..+.+++|+-|..
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~----~~g~kvli~kp~~ 57 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQ----IAQYKCLVIKYAK 57 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH----TTTCCEEEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH----HCCCeEEEEeecC
Confidence 368899999999966555554443 3577899998875
No 120
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.96 E-value=0.097 Score=58.30 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=17.5
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL 83 (2355)
.+++|.+|+|+|||.++- ++...+
T Consensus 68 ~~vll~G~~GtGKT~la~-~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL-KMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHH-HHHHHH
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHH
Confidence 359999999999996654 333344
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.72 E-value=0.37 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=17.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL 83 (2355)
..++|.+|.|+|||..+. .+...+
T Consensus 46 ~~vll~G~~G~GKT~la~-~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK-YIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHHH-HHHHHH
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHH
Confidence 459999999999996543 444444
No 122
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.70 E-value=1.8 Score=43.47 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=18.1
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
..++|.+|+|+|||..+. .+...+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~-~~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVE-GLAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHHH-HHHHHHH
T ss_pred CceEEECCCCCCHHHHHH-HHHHHHH
Confidence 569999999999996544 4444443
No 123
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.58 E-value=0.34 Score=54.66 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=23.1
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
+..++|.+|.|+|||..+- .++..+.........++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~-~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK-FVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH-HHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHHhcCCceEEEEE
Confidence 3569999999999995543 44444432111034455554
No 124
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.54 E-value=0.66 Score=51.33 Aligned_cols=18 Identities=11% Similarity=0.301 Sum_probs=15.0
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..++|.+|+|+|||.++-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 359999999999996654
No 125
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.45 E-value=0.27 Score=51.67 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=22.8
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
..++|.+|+|+|||..+. ++...+.. .+.+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~~---~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELAK---RNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHHT---TTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH---cCCeEEEE
Confidence 679999999999996644 45555542 24445544
No 126
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.44 E-value=0.29 Score=49.42 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=18.5
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
..+++|.+|+|+|||..+. .+...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~-~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE-GLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH-HHHHHHH
Confidence 3569999999999996544 4444443
No 127
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.04 E-value=0.089 Score=59.43 Aligned_cols=37 Identities=11% Similarity=0.219 Sum_probs=25.3
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE 101 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA 101 (2355)
.++.++||+|||...+-.+..+.. .+.+++|+.|...
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~----~g~kvli~kp~~D 67 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIY----AKQKVVVFKPAID 67 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH----TTCCEEEEEEC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----cCCceEEEEeccC
Confidence 688999999999655544433332 3577999999753
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.90 E-value=0.11 Score=57.74 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=25.7
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
=.++.+|||+|||.-.+-++-.+.. .+.+++|+.|.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~----~~~kvl~~kp~ 57 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQI----AQYKCLVIKYA 57 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH----TTCCEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH----cCCeEEEEccc
Confidence 3788999999999554544444433 35778999886
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.71 E-value=0.066 Score=55.65 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCchHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVAL 76 (2355)
.+..++|.+|+|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56779999999999995433
No 130
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.48 E-value=0.3 Score=55.14 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=25.2
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
...+|||||+|.+........+..++...+...++|+.+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 5679999999998622233455555555555556666443
No 131
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.41 E-value=0.57 Score=56.53 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=24.0
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
..++|.||+|+|||..+- ++...+... ..+.++++|..
T Consensus 131 ~~lll~Gp~G~GKTtLa~-aia~~l~~~-~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQN-EPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHH-HHHHHHHHH-CCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHh-CCCCeEEEeeH
Confidence 469999999999996554 444444321 22445666543
No 132
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.40 E-value=0.21 Score=55.08 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.6
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
...++|.+|+|+|||.++-
T Consensus 51 ~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CSEEEEESSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4579999999999996543
No 133
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.28 E-value=0.23 Score=54.47 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=15.5
Q ss_pred EEEEccCCchHHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAAL 80 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAIL 80 (2355)
.++.++.|+|||..++..++
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 68999999999977654433
No 134
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.82 E-value=0.62 Score=51.72 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=24.9
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
....+|||||+|.+... ....+..++...+....+|+++
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999988543 2344555566555555555544
No 135
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.77 E-value=0.47 Score=54.49 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=16.1
Q ss_pred cEEE--EccCCchHHHHHHHHHHHHH
Q psy8497 60 DAIV--QSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 60 NVIL--AAPTGSGKTLVALIAILerL 83 (2355)
.++| .+|.|+|||...- .++..+
T Consensus 52 ~~li~i~G~~G~GKT~L~~-~~~~~~ 76 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAK-FTVKRV 76 (412)
T ss_dssp EEEEECTTCCSSSHHHHHH-HHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHH-HHHHHH
Confidence 4777 8999999996543 444444
No 136
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.63 E-value=0.35 Score=54.51 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=26.0
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
....+|||||+|.+... ....+..++...+....+|+++.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 45679999999988643 23455566666655556666543
No 137
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.62 E-value=1.3 Score=45.77 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=22.6
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
...+|||||+|.+... ....+..++...+....+|++|.
T Consensus 126 ~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEeC
Confidence 4569999999987432 23444444544444445555443
No 138
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.57 E-value=0.39 Score=58.61 Aligned_cols=128 Identities=16% Similarity=0.237 Sum_probs=70.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++++|+|||.+.. .+...+.. .+.+++++. +.+. ...|+..+.... ++.+ +.....
T Consensus 100 I~lvG~~GsGKTTt~~-kLA~~l~~---~G~kVllv~~D~~r~~a~eqL~~~~~~~-----gv~~--~~~~~~------- 161 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAG-KLAYFYKK---RGYKVGLVAADVYRPAAYDQLLQLGNQI-----GVQV--YGEPNN------- 161 (433)
T ss_dssp EEECCCTTSCHHHHHH-HHHHHHHH---TTCCEEEEEECCSCHHHHHHHHHHHHTT-----TCCE--ECCTTC-------
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHH---cCCeEEEEecCccchhHHHHHHHHHHhc-----CCce--eecccc-------
Confidence 6778999999996554 33344442 356677665 3332 333333333222 2211 111100
Q ss_pred CcEEEECHHHHH-HHHHhhcccCcCceEEEecccchhc---ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 138 VQIVVGSPGRIK-QMIKLKYLNMDSVRLFIMDEADKLI---NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTPErLL-DLLdrr~LdLSkIdLLIVDEAHRLk---N~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..|..+. ..+. .+....+++||||++-++. +..+...+..+...+.+..-++.+.|+........+..+
T Consensus 162 -----~dp~~i~~~al~--~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 162 -----QNPIEIAKKGVD--IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp -----SCHHHHHHHHHH--HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred -----CCHHHHHHHHHH--HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 1233222 2222 2234578899999998754 333556667777777777777888998776655555443
No 139
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.54 E-value=0.23 Score=50.56 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=16.8
Q ss_pred HHcCCcEEEEccCCchHHHHH
Q psy8497 55 VLNGYDAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 55 LLSGRNVILAAPTGSGKTLVA 75 (2355)
+....+++|.+|+|+|||.++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999543
No 140
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.49 E-value=0.22 Score=52.48 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=18.6
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
...++|.+|+|+|||..+. .+...+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~-~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH-AACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4679999999999996544 4444433
No 141
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=91.41 E-value=0.24 Score=66.80 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=76.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHHHHHHHHHHhcC--CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP--VQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVALIAILerL~ekr--~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
.+++-|.++|..- +.+++|.|.-|||||.+.+--++..+.... ....++|+|++|...+.++.+.+.......-.-
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~~ 87 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQ 87 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhhc
Confidence 7899999998753 778999999999999887766666655321 245689999999999999998888743211000
Q ss_pred EEEEEECC-cccc-CCCCCCcEEEECHHHHHHHHHhhcccC--cCceEEEecccch
Q psy8497 121 HVDYFIGG-TQVE-RPKRPVQIVVGSPGRIKQMIKLKYLNM--DSVRLFIMDEADK 172 (2355)
Q Consensus 121 rVVvytGG-kq~r-kqirq~DILVTTPErLLDLLdrr~LdL--SkIdLLIVDEAHR 172 (2355)
... .... .......+-|+|...+...+-+..... ..-.+-|+||...
T Consensus 88 -----~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~~ 138 (1232)
T 3u4q_A 88 -----RPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEG 138 (1232)
T ss_dssp -----STTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHHH
T ss_pred -----CcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHHH
Confidence 000 0000 000013468899988765444332111 1222447888663
No 142
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=91.19 E-value=0.33 Score=62.17 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=71.3
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc
Q psy8497 43 KESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120 (2355)
Q Consensus 43 eLRPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgL 120 (2355)
.++.-|.+++..+..- .-.+|.|+-|.|||.+ +-.++..+. ..++|.+|+..-+.. +.++...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~-lG~~~a~~~------~~~~vtAP~~~a~~~----l~~~~~~---- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSAL-AGQLISRIA------GRAIVTAPAKASTDV----LAQFAGE---- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHH-HHHHHHHSS------SCEEEECSSCCSCHH----HHHHHGG----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHH-HHHHHHHHH------hCcEEECCCHHHHHH----HHHHhhC----
Confidence 6788999999988863 3479999999999944 434444433 246999999876443 3333211
Q ss_pred EEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEe
Q psy8497 121 HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200 (2355)
Q Consensus 121 rVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSA 200 (2355)
.|-+..|+.+.. .....++||||||=.+. ...+..++... ..++||.
T Consensus 240 ------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~----~~v~~~t 286 (671)
T 2zpa_A 240 ------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF----PRTLLTT 286 (671)
T ss_dssp ------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----SEEEEEE
T ss_pred ------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----CeEEEEe
Confidence 033446765421 23458899999998764 24445555432 2466666
Q ss_pred ccC
Q psy8497 201 TYS 203 (2355)
Q Consensus 201 TLS 203 (2355)
|..
T Consensus 287 Tv~ 289 (671)
T 2zpa_A 287 TVQ 289 (671)
T ss_dssp EBS
T ss_pred cCC
Confidence 654
No 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.18 E-value=0.59 Score=53.08 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=28.8
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEeccC
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS 203 (2355)
....+|||||+|.| +......+..++...+....+|++|..+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 36779999999984 44445666777777666666666665443
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.64 E-value=1.6 Score=45.87 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
+.-++|.+|+|+|||..+.. ++..+.. .+..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~-l~~~~~~---~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLH-FIAKGLR---DGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHH-HHHHHHH---HTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHH-HHHHHHH---CCCeEEEEE
Confidence 45588999999999955443 3323321 245677765
No 145
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.52 E-value=1.6 Score=48.56 Aligned_cols=132 Identities=11% Similarity=0.124 Sum_probs=73.4
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTRE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
..++|..+.|-|||.+++..++..+. .+.+|+|+.-.+. ...--.+.+..+ ++.+. ..+....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g----~G~rV~~vQF~Kg~~~~gE~~~l~~L-----~v~~~--~~g~gf~----- 92 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG----HGKNVGVVQFIKGTWPNGERNLLEPH-----GVEFQ--VMATGFT----- 92 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH----TTCCEEEEESSCCSSCCHHHHHHGGG-----TCEEE--ECCTTCC-----
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEEeeCCCCCccHHHHHHhC-----CcEEE--Ecccccc-----
Confidence 46999999999999999888887776 3778999843321 000001122222 12221 1111111
Q ss_pred CcEEEECHH------HHHHHHHh--hcccCcCceEEEecccchhcccCh--HHHHHHHHHhCCCCceEEEEEeccChhHH
Q psy8497 138 VQIVVGSPG------RIKQMIKL--KYLNMDSVRLFIMDEADKLINTGF--VEDITWIYSQLPPMKQMLVVSATYSHDNL 207 (2355)
Q Consensus 138 ~DILVTTPE------rLLDLLdr--r~LdLSkIdLLIVDEAHRLkN~GF--~SrLeeILs~LppnrQILLLSATLS~EIL 207 (2355)
..+++ .....+.. ..+.-..+++||+||+=.....++ ...+..++...+...-+|+++--++.++.
T Consensus 93 ----~~~~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 93 ----WETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp ----CCGGGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred ----cCCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 12211 11111111 233347799999999976554443 45667777777766667766666665554
Q ss_pred HHH
Q psy8497 208 ATL 210 (2355)
Q Consensus 208 ElL 210 (2355)
+..
T Consensus 169 e~A 171 (196)
T 1g5t_A 169 DLA 171 (196)
T ss_dssp HHC
T ss_pred HhC
Confidence 443
No 146
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.29 E-value=0.18 Score=51.36 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=24.0
Q ss_pred eEEEecccchhcccChHHHHHHHHHhCCCCceEEEEEec
Q psy8497 163 RLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201 (2355)
Q Consensus 163 dLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLSAT 201 (2355)
++|+|||+|.+... ....+..++...+...++|+.|..
T Consensus 78 g~l~ldei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHH-HHHHHHHHHhhcCCCEEEEEECCc
Confidence 47999999988643 234455555555555666665554
No 147
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.79 E-value=0.44 Score=54.89 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=23.6
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH-hcCCCCCeEEEEc
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLI-KLPVQQPQTIILA 97 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~-ekr~qggRVLILV 97 (2355)
..+++|.+|+|+|||..+. ++...+. . .+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~~~---~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELSEK---KGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHHHH---SCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHHh---cCCcEEEEE
Confidence 4679999999999997655 3444443 2 234555543
No 148
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.65 E-value=1.6 Score=47.30 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=15.0
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..++|.+|+|+|||.++-
T Consensus 40 ~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568999999999996544
No 149
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.54 E-value=1.6 Score=51.15 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||.++-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 469999999999996654
No 150
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.33 E-value=0.85 Score=52.18 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||.++-
T Consensus 52 ~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CEEEEECSSSSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 469999999999996654
No 151
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.05 E-value=1.2 Score=51.51 Aligned_cols=39 Identities=5% Similarity=0.204 Sum_probs=24.6
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
..+.+|||||+|.|.... ...+.++++.-++...+|+++
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 467899999999986432 244555555544445555544
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.86 E-value=1.4 Score=46.96 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=31.3
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSV 113 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREF 113 (2355)
+.-++|.+|+|+|||..++..+...+. .+.+++|+..... ..++.+++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~----~~~~v~~~~~e~~-~~~~~~~~~~~ 73 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK----MGEPGIYVALEEH-PVQVRQNMAQF 73 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH----TTCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEEccCC-HHHHHHHHHHc
Confidence 455899999999999665544443333 3567888774322 34445555443
No 153
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.72 E-value=1.5 Score=51.53 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+++||.+|+|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999996654
No 154
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.79 E-value=0.97 Score=49.74 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCchHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVAL 76 (2355)
...+++|.+|+|+|||.++-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 35679999999999996543
No 155
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.12 E-value=3.2 Score=51.03 Aligned_cols=128 Identities=15% Similarity=0.253 Sum_probs=68.9
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHH-HHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREI-AVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRAL-AqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++++++|+|||.+.. .+..++.. .+.++++|. |.+.- ..|+..|... . ++.+ +.....
T Consensus 103 IlivG~~G~GKTTt~~-kLA~~l~~---~G~kVllv~~D~~R~aa~eqL~~~~~~----~-gvpv--~~~~~~------- 164 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVA-KLARYFQK---RGYKVGVVCSDTWRPGAYHQLRQLLDR----Y-HIEV--FGNPQE------- 164 (443)
T ss_dssp EEEECCTTSSHHHHHH-HHHHHHHT---TTCCEEEEECCCSSTHHHHHHHHHHGG----G-TCEE--ECCTTC-------
T ss_pred EEEECcCCCCHHHHHH-HHHHHHHH---CCCeEEEEeCCCcchhHHHHHHHHHHh----c-CCcE--EecCCC-------
Confidence 7889999999996654 44445542 456677666 44333 2333333222 2 2222 111110
Q ss_pred CcEEEECHHHH-HHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 138 VQIVVGSPGRI-KQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 138 ~DILVTTPErL-LDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..|..+ ...+.. +....+++||||.+=++... .....+..+.....+..-++.+.|+........+..+
T Consensus 165 -----~dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 165 -----KDAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp -----CCHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 123322 222221 11234789999998665422 2344555666666666677888898876666555444
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.00 E-value=0.98 Score=50.03 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=24.0
Q ss_pred CceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 161 SVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
...+|||||+|.+.... ...+..++...+....+|++|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999876432 233455555555555666555
No 157
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=86.80 E-value=7.1 Score=44.59 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=17.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL 83 (2355)
+.++|.+|+|+|||.++- ++...+
T Consensus 71 ~~vLl~GppGtGKT~la~-~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM-GMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHH-HHHHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHHHh
Confidence 469999999999996554 444443
No 158
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=86.73 E-value=1.7 Score=50.53 Aligned_cols=79 Identities=11% Similarity=0.059 Sum_probs=65.2
Q ss_pred CCCeEEEEEcccccHHHHHHHHHh---cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc----cccCCCCccE
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLAN---ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA----RGIDAANVDL 336 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrE---rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG----EGLDLPaVDT 336 (2355)
...++||.++++..+..+++.|.. .++.+..++|+++..++...++.+..+..+|+|+|...- .-+++..+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 446999999999999999999988 578999999999999999999999999999999995321 1255667888
Q ss_pred EEEecC
Q psy8497 337 VINLEI 342 (2355)
Q Consensus 337 VIIyDS 342 (2355)
||+-..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 876554
No 159
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=86.57 E-value=1.5 Score=57.05 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=67.7
Q ss_pred CeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-ccccCCCCccEEEEe
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA-ARGIDAANVDLVINL 340 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL-GEGLDLPaVDTVIIy 340 (2355)
.++||.++++..+..+++.|... ++.+..++|+++..+|..+++.+.+|..+|||+|... ...+.+..+.+||+-
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEec
Confidence 58999999999888777766653 7899999999999999999999999999999999653 456788899999987
Q ss_pred cCCC
Q psy8497 341 EIPH 344 (2355)
Q Consensus 341 DSP~ 344 (2355)
..+.
T Consensus 498 EaHr 501 (780)
T 1gm5_A 498 EQHR 501 (780)
T ss_dssp SCCC
T ss_pred ccch
Confidence 7775
No 160
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.49 E-value=23 Score=39.54 Aligned_cols=37 Identities=16% Similarity=0.468 Sum_probs=22.6
Q ss_pred ceEEEecccchhcc---cChHHHHHHHHHhCCCCceEEEEE
Q psy8497 162 VRLFIMDEADKLIN---TGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 162 IdLLIVDEAHRLkN---~GF~SrLeeILs~LppnrQILLLS 199 (2355)
--+|||||+|.+.. ..+...+..+....+ ...+|+++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 34899999999864 345556665555442 34444433
No 161
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.42 E-value=2 Score=48.71 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=15.2
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.+++|.+|+|+|||.++-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 469999999999996544
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=84.99 E-value=4.5 Score=45.95 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=23.2
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
....+|||||+|.+... ....+..++...+....+|++|
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 45679999999987543 2344455555544444444443
No 163
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.77 E-value=2.3 Score=47.30 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=15.7
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.++|.+|+|+|||.++-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999996543
No 164
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.66 E-value=10 Score=45.63 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=29.1
Q ss_pred HHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 51 AFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 51 ALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.|..++.| .-++|+|++|+|||..++-.+..... ..+.+++|+..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~---~~g~~vl~~sl 237 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL---KEGVGVGIYSL 237 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCCCEEEEES
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEEC
Confidence 45666643 33899999999999655544444333 13567888874
No 165
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.28 E-value=1.7 Score=53.67 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=27.6
Q ss_pred ceEEEecccchhcccC----------hHHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 162 VRLFIMDEADKLINTG----------FVEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 162 IdLLIVDEAHRLkN~G----------F~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
..+|+|||+|.|.... ....+..++..+.....++++.||-..
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 4589999999886421 234445555555556667777777553
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.07 E-value=0.76 Score=55.88 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.5
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
++||.+|+|+|||.++-
T Consensus 52 ~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAE 68 (447)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 59999999999996544
No 167
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.05 E-value=2.5 Score=48.03 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=15.8
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.++|.+|+|+|||..+-
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CSEEEEECSSSSSHHHHHH
T ss_pred CceEEEECCCCcCHHHHHH
Confidence 4569999999999996644
No 168
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.96 E-value=4.1 Score=49.94 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=25.9
Q ss_pred cCceEEEecccchhcccC--hHHHHHHHHHhCCCCceEEEEEecc
Q psy8497 160 DSVRLFIMDEADKLINTG--FVEDITWIYSQLPPMKQMLVVSATY 202 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~G--F~SrLeeILs~LppnrQILLLSATL 202 (2355)
....+|||||+|.|.... ....+..++... ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 345689999999986432 234455555442 45677777764
No 169
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.79 E-value=5.8 Score=45.84 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.1
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||..+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 569999999999996544
No 170
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.03 E-value=2.9 Score=47.99 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=25.8
Q ss_pred cCceEEEecccchhcccChHHHHHHHHHhCCCCceEEEEE
Q psy8497 160 DSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199 (2355)
Q Consensus 160 SkIdLLIVDEAHRLkN~GF~SrLeeILs~LppnrQILLLS 199 (2355)
....++||||+|.|... ....+..+++..+....+|+++
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999987643 2345566666666556665544
No 171
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.54 E-value=1.4 Score=51.36 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.6
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.++|.+|+|+|||.++-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999996654
No 172
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.14 E-value=2.6 Score=50.87 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.2
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.+||.+|+|+|||.++-
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999996654
No 173
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=82.07 E-value=2.8 Score=44.81 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEcc
Q psy8497 51 AFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAP 98 (2355)
Q Consensus 51 ALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVP 98 (2355)
.|+.++. +.-++|.+|.|+|||..+...+...+... ......+|++..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 4555553 34589999999999965544333222210 002456777764
No 174
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.77 E-value=7.1 Score=45.09 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=56.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi 135 (2355)
.-++|++++|+|||.+....+ ..+.. ..+.+++++. +.+ ....|+..+...+ ++.+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA-~~l~~--~~G~~V~lv~~D~~r~~a~eqL~~~~~~~-----gl~~~------------ 165 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA-AISML--EKHKKIAFITTDTYRIAAVEQLKTYAELL-----QAPLE------------ 165 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH-HHHHH--TTCCCEEEEECCCSSTTHHHHHHHHHTTT-----TCCCC------------
T ss_pred cEEEEECCCCCCHHHHHHHHH-HHHHH--hcCCEEEEEecCcccchHHHHHHHHHHhc-----CCCeE------------
Confidence 347889999999996544333 23331 1344666654 222 2223333332211 11110
Q ss_pred CCCcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccChHHHHHHHHHhCC---CCceEEEEEeccChh
Q psy8497 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP---PMKQMLVVSATYSHD 205 (2355)
Q Consensus 136 rq~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~Lp---pnrQILLLSATLS~E 205 (2355)
...++..+...+.. +..+++||||-+-++... ...+..+...+. +..-++.+.+|....
T Consensus 166 -----~~~~~~~l~~al~~----~~~~dlvIiDT~G~~~~~--~~~~~el~~~l~~~~~~~~~lVl~at~~~~ 227 (296)
T 2px0_A 166 -----VCYTKEEFQQAKEL----FSEYDHVFVDTAGRNFKD--PQYIDELKETIPFESSIQSFLVLSATAKYE 227 (296)
T ss_dssp -----BCSSHHHHHHHHHH----GGGSSEEEEECCCCCTTS--HHHHHHHHHHSCCCTTEEEEEEEETTBCHH
T ss_pred -----ecCCHHHHHHHHHH----hcCCCEEEEeCCCCChhh--HHHHHHHHHHHhhcCCCeEEEEEECCCCHH
Confidence 00134445444431 266789999976554321 233334444443 223366676776533
No 175
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=80.61 E-value=2.7 Score=45.03 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCchHHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVV 77 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALI 77 (2355)
.|.-+.|.+|.|+|||.....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH
Confidence 355689999999999965443
No 176
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.42 E-value=8.4 Score=47.04 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.0
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.+||.+|.|+|||+.+-
T Consensus 182 prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCEEEESCSSSSHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHH
Confidence 3679999999999996654
No 177
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.99 E-value=0.77 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=16.8
Q ss_pred cEEEEccCCchHHHHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL 83 (2355)
+++|.||.|+|||..+. .+...+
T Consensus 40 ~~ll~G~~G~GKt~la~-~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI-ALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHH-HHHHHH
T ss_pred eEEEECcCCcCHHHHHH-HHHHHh
Confidence 59999999999995544 444443
No 178
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.91 E-value=10 Score=41.55 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=14.9
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||..+-
T Consensus 46 ~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 469999999999996543
No 179
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=79.63 E-value=11 Score=45.61 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=28.6
Q ss_pred HHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 51 AFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 51 ALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.|..++. +.-++|+|++|+|||..++..+...... .+.+++|+..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCEEEEES
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEEEC
Confidence 4566654 3348999999999996555444433321 2457888874
No 180
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.54 E-value=3.6 Score=46.84 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=14.6
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..++|.+|+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358889999999996654
No 181
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=79.22 E-value=16 Score=40.64 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHH-cCCcEEEEccCCchHHHH
Q psy8497 45 SPIQMAAFPYVL-NGYDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 45 RPYQeEALn~LL-SGRNVILAAPTGSGKTLV 74 (2355)
+.-+.+.+..++ .+..++|.+|.|.|||..
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHH
Confidence 333444443333 356799999999999944
No 182
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.97 E-value=2.7 Score=47.00 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=15.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..++|.+|+|+|||.++-
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999996544
No 183
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=78.62 E-value=4 Score=51.27 Aligned_cols=122 Identities=9% Similarity=0.023 Sum_probs=81.3
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHH--hCCCccEEEEecc-c----------ccccCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSF--KRGKVRILVTTDL-A----------ARGIDA 331 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErF--RSGEIdVLVSTSA-L----------GEGLDL 331 (2355)
.+++||.++++..+....+.|...|+.+..++|+++..++..++..+ ..+..+|||+|.- + ...+++
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~ 163 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEA 163 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHT
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhc
Confidence 36999999999999999999999999999999999999999998888 4688999999973 1 122345
Q ss_pred CCccEEEEecCC----CC--HhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcc
Q psy8497 332 ANVDLVINLEIP----HD--AATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINL 386 (2355)
Q Consensus 332 PaVDTVIIyDSP----~S--PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKL 386 (2355)
..+.+||+-... |. ....+..++...+.-....++.+....+......+...+..
T Consensus 164 ~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~ 224 (591)
T 2v1x_A 164 RRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCI 224 (591)
T ss_dssp TCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTC
T ss_pred cCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCC
Confidence 567777754433 11 11111222222221123456666665565555555554443
No 184
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=78.27 E-value=26 Score=40.36 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=58.9
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+.|.++.|+|||......+ ..+.. .+++++++- +.+ ....|+..+.... ++.+. ..+..
T Consensus 101 i~i~g~~G~GKTT~~~~la-~~~~~---~~~~v~l~~~d~~~~~~~~ql~~~~~~~-----~l~~~--~~~~~------- 162 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLA-LYYKG---KGRRPLLVAADTQRPAAREQLRLLGEKV-----GVPVL--EVMDG------- 162 (295)
T ss_dssp EEEECCTTTTHHHHHHHHH-HHHHH---TTCCEEEEECCSSCHHHHHHHHHHHHHH-----TCCEE--ECCTT-------
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH---cCCeEEEecCCcccHhHHHHHHHhcccC-----CeEEE--EcCCC-------
Confidence 5677999999996544332 23332 356676665 222 3333443333322 22221 11110
Q ss_pred CcEEEECHHHHH-HHHHhhcccCcCceEEEecccchhc-ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHH
Q psy8497 138 VQIVVGSPGRIK-QMIKLKYLNMDSVRLFIMDEADKLI-NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATL 210 (2355)
Q Consensus 138 ~DILVTTPErLL-DLLdrr~LdLSkIdLLIVDEAHRLk-N~GF~SrLeeILs~LppnrQILLLSATLS~EILElL 210 (2355)
..|..+. ..+.. +....+++||||+.=.+. +......+..+...+.+..-++.+.++...+....+
T Consensus 163 -----~~p~~l~~~~l~~--~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~ 230 (295)
T 1ls1_A 163 -----ESPESIRRRVEEK--ARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230 (295)
T ss_dssp -----CCHHHHHHHHHHH--HHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH
T ss_pred -----CCHHHHHHHHHHH--HHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHH
Confidence 1333332 22211 112467899999994432 222234444444544444445556676554444433
No 185
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=78.10 E-value=23 Score=42.13 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=28.9
Q ss_pred HHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 51 AFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 51 ALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.|..++.| .-+||+|++|.|||..++-.+..... .+.+|+|+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g~~Vl~fSl 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----DDRGVAVFSL 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----TTCEEEEEES
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEeC
Confidence 45555543 34899999999999655544443333 4678888874
No 186
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=78.05 E-value=3.8 Score=55.12 Aligned_cols=79 Identities=11% Similarity=0.059 Sum_probs=65.2
Q ss_pred CCCeEEEEEcccccHHHHHHHHHh---cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecccc----cccCCCCccE
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLAN---ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA----RGIDAANVDL 336 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrE---rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSALG----EGLDLPaVDT 336 (2355)
...++||.++++..+..+.+.|.. .++.+..++|+++..+|...++.+..+..+|||+|.-.- .-+++..+.+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 346899999999999999999988 567899999999998999999999999999999995321 1255677888
Q ss_pred EEEecC
Q psy8497 337 VINLEI 342 (2355)
Q Consensus 337 VIIyDS 342 (2355)
||+-..
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 886554
No 187
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=77.92 E-value=15 Score=42.86 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=28.4
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccH-HHHHHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTR-EIAVQITDVVRSV 113 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTR-ALAqQ~anwLREF 113 (2355)
++|.+++|+|||..... +...+.. .+++++++. +.+ ....|...|...+
T Consensus 107 i~ivG~~GsGKTTl~~~-LA~~l~~---~g~kV~lv~~D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGK-LAKMFVD---EGKSVVLAAADTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp EEEECCTTSSHHHHHHH-HHHHHHH---TTCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHH-HHHHHHh---cCCEEEEEccccccHHHHHHHHHHHHHc
Confidence 67899999999965443 3333332 355666654 222 3445555666554
No 188
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=77.34 E-value=6 Score=48.70 Aligned_cols=120 Identities=12% Similarity=0.092 Sum_probs=81.7
Q ss_pred CeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccccCCCCccEEEE
Q psy8497 266 NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA------ARGIDAANVDLVIN 339 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL------GEGLDLPaVDTVII 339 (2355)
+++||.++++..+....+.|...++.+..+++..+..++..++..+..+..+||++|.-- ...+....+.+||+
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 689999999999999999999999999999999999999999999999999999999521 12234456666765
Q ss_pred ecCC----CC--HhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhc
Q psy8497 340 LEIP----HD--AATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385 (2355)
Q Consensus 340 yDSP----~S--PqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLK 385 (2355)
-... |. ......++++..+.-....++.+....+......+...+.
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 197 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLG 197 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHT
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhC
Confidence 4333 21 2222334444332112244555555555555555555444
No 189
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=76.54 E-value=6.1 Score=48.85 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.0
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||+.+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999996543
No 190
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=76.39 E-value=3.2 Score=49.00 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=30.8
Q ss_pred HHHHHHHc------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 50 AAFPYVLN------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 50 EALn~LLS------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
..|..++. +.-++|.+|.|+|||..++..+..... .+.+++|+...
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~----~g~~vlyi~~E 98 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA----AGGIAAFIDAE 98 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----TTCCEEEEESS
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECC
Confidence 35666665 244899999999999766554444433 35678888754
No 191
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.24 E-value=4.1 Score=57.98 Aligned_cols=46 Identities=9% Similarity=0.111 Sum_probs=33.6
Q ss_pred HHHHHHc------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccH
Q psy8497 51 AFPYVLN------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTR 100 (2355)
Q Consensus 51 ALn~LLS------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTR 100 (2355)
.+..++. +..++|.+|+|+|||..++..+..... .+.+++|+...-
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~----~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TTCCEEEECTTS
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEEccc
Confidence 3666766 567999999999999877655554332 467788888653
No 192
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.23 E-value=7.7 Score=47.65 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.5
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.+||.+|.|+|||+.+-
T Consensus 216 rGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999996654
No 193
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=74.99 E-value=6.1 Score=53.42 Aligned_cols=80 Identities=20% Similarity=0.254 Sum_probs=67.0
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec-ccccccCCCCccEEEE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD-LAARGIDAANVDLVIN 339 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS-ALGEGLDLPaVDTVII 339 (2355)
..++||.++++..+..+.+.|... ++.+..+++..+..++..+++.+..|.++|+|+|. .+...+.+..+.+||+
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 459999999999988887777643 57889999999999999999999999999999994 4555688888888887
Q ss_pred ecCCC
Q psy8497 340 LEIPH 344 (2355)
Q Consensus 340 yDSP~ 344 (2355)
-....
T Consensus 732 DEaH~ 736 (1151)
T 2eyq_A 732 DEEHR 736 (1151)
T ss_dssp ESGGG
T ss_pred echHh
Confidence 66554
No 194
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=74.94 E-value=5.1 Score=47.89 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=31.4
Q ss_pred HHHHHHHc-C-----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 50 AAFPYVLN-G-----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 50 EALn~LLS-G-----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
..|+.++. | .-++|.+|.|+|||..++ .++..+.. .+.+++||.....+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal-~la~~~~~---~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLAL-HAIAEAQK---MGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHH-HHHHHHHH---TTCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHH-HHHHHHHh---cCCeEEEEeccccc
Confidence 34666665 2 348889999999996544 44444332 35678888765433
No 195
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.81 E-value=6.3 Score=48.36 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=30.3
Q ss_pred ccccCcccCCcHH-HHHHHHHC---CCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHH
Q psy8497 19 DVLFENDVLIEKP-IRQGLQEN---GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 19 DkV~SFEeLlLkp-LLK~Lqa~---GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVAL 76 (2355)
.+..+|+....-. +.+.|... -+..+--|+..+++ -.+.+||.+|.|+|||+.+-
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHHH
Confidence 3456787776444 44444321 11222222222211 13679999999999996654
No 196
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=74.80 E-value=9.3 Score=44.95 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=38.1
Q ss_pred CceEEEecccchhc-ccChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHHh
Q psy8497 161 SVRLFIMDEADKLI-NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213 (2355)
Q Consensus 161 kIdLLIVDEAHRLk-N~GF~SrLeeILs~LppnrQILLLSATLS~EILElLkKf 213 (2355)
..++++||.+-++. .......+..+...+.+...++.+.++........+..+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45688999987654 233556666666777778888899999887777766654
No 197
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.54 E-value=10 Score=46.46 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.+||.+|+|+|||+.+-
T Consensus 207 rGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CEEEEESCTTTTHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999996654
No 198
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.11 E-value=10 Score=46.87 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=30.1
Q ss_pred ccccCcccCC-cHHHHHHHHH---CCCCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHHHH
Q psy8497 19 DVLFENDVLI-EKPIRQGLQE---NGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 19 DkV~SFEeLl-LkpLLK~Lqa---~GF~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLVAL 76 (2355)
.+..+|+... +..+.+.|.. +-+..+--|+.-+++ -.+.+||.+|.|+|||+.+-
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHHH
Confidence 3456787776 4444444432 112223222222211 13679999999999996654
No 199
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.70 E-value=7.6 Score=51.00 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=26.7
Q ss_pred CceEEEecccchhccc------Ch----HHHHHHHHHhCCCCceEEEEEeccCh
Q psy8497 161 SVRLFIMDEADKLINT------GF----VEDITWIYSQLPPMKQMLVVSATYSH 204 (2355)
Q Consensus 161 kIdLLIVDEAHRLkN~------GF----~SrLeeILs~LppnrQILLLSATLS~ 204 (2355)
...+|+|||++.|... .. ...+...+..+....+++++-||-..
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~ 350 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSST
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCCh
Confidence 3468999999988632 11 22333344445555677777787554
No 200
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=73.69 E-value=45 Score=36.83 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=56.9
Q ss_pred HhcCCCCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----c--ccc
Q psy8497 260 LSQTPFNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----A--ARG 328 (2355)
Q Consensus 260 Lerl~kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----L--GEG 328 (2355)
+......++||.++++..+..+++.+... ++.+..++|+....+....+ ....+|+|+|.. + ...
T Consensus 106 ~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~ 181 (249)
T 3ber_A 106 LETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKG 181 (249)
T ss_dssp HHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTT
T ss_pred hcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCC
Confidence 33334458999999999988888777654 78899999998866554433 246789999942 2 135
Q ss_pred cCCCCccEEEEecCC
Q psy8497 329 IDAANVDLVINLEIP 343 (2355)
Q Consensus 329 LDLPaVDTVIIyDSP 343 (2355)
+++..+++||+-..+
T Consensus 182 ~~l~~~~~lViDEah 196 (249)
T 3ber_A 182 FNLRALKYLVMDEAD 196 (249)
T ss_dssp CCCTTCCEEEECSHH
T ss_pred cCccccCEEEEcChh
Confidence 678888888865544
No 201
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=73.18 E-value=6.4 Score=47.00 Aligned_cols=97 Identities=10% Similarity=0.244 Sum_probs=53.8
Q ss_pred HHHHHHHc------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEE
Q psy8497 50 AAFPYVLN------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVD 123 (2355)
Q Consensus 50 EALn~LLS------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVV 123 (2355)
..|+.++. +.-++|.++.|+|||..++..+..... .+.+++||..-..+. ++ ++..+.....
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~----~g~~vlyi~~E~s~~-~~--~a~~~g~d~~----- 127 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK----AGGTCAFIDAEHALD-PV--YARALGVNTD----- 127 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----TTCCEEEEESSCCCC-HH--HHHHTTCCGG-----
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH----CCCeEEEEECCCChh-HH--HHHHcCCCHH-----
Confidence 35666665 234888999999999665544443333 356788887543321 11 1233321110
Q ss_pred EEECCccccCCCCCCcEEE---ECHHHHHHHHHhhcccCcCceEEEecccchhc
Q psy8497 124 YFIGGTQVERPKRPVQIVV---GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 124 vytGGkq~rkqirq~DILV---TTPErLLDLLdrr~LdLSkIdLLIVDEAHRLk 174 (2355)
+|+| .|.+.++..+.. ......+++||||.+..+.
T Consensus 128 ---------------~l~i~~~~~~e~~l~~l~~-l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 128 ---------------ELLVSQPDNGEQALEIMEL-LVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp ---------------GCEEECCSSHHHHHHHHHH-HHTTTCCSEEEEECTTTCC
T ss_pred ---------------HceeecCCcHHHHHHHHHH-HHhcCCCCEEEEeChHHhc
Confidence 1112 244555444432 1123457899999999876
No 202
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=72.78 E-value=14 Score=41.38 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=18.4
Q ss_pred HHcCCcEEEEccCCchHHHHHHHHH
Q psy8497 55 VLNGYDAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 55 LLSGRNVILAAPTGSGKTLVALIAI 79 (2355)
+..+.-++|.+|.|+|||..+...+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3355668999999999996555433
No 203
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=72.72 E-value=3.4 Score=47.64 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=35.3
Q ss_pred HHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEcccHHH-HHHHHHHHHHH
Q psy8497 51 AFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAPTREI-AVQITDVVRSV 113 (2355)
Q Consensus 51 ALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVPTRAL-AqQ~anwLREF 113 (2355)
.|..++. +.-++|.+|+|+|||..++..+....... ...+.+++||.-...+ ..++..+++.+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4566664 24489999999999965554443221100 0115678888765432 33445555544
No 204
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=72.42 E-value=9.3 Score=47.87 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.2
Q ss_pred HHHcCCcEEEEccCCchHHHHHH
Q psy8497 54 YVLNGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 54 ~LLSGRNVILAAPTGSGKTLVAL 76 (2355)
.+..+..++|.+|+|+|||..+-
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHH
Confidence 34467889999999999995543
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=71.94 E-value=8.4 Score=50.15 Aligned_cols=24 Identities=13% Similarity=0.401 Sum_probs=17.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL 83 (2355)
.+++|.+|+|+|||.++- .+...+
T Consensus 192 ~~vlL~G~pG~GKT~la~-~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE-GLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHH-HHHHHH
T ss_pred CceEEEcCCCCCHHHHHH-HHHHHH
Confidence 469999999999996544 444444
No 206
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=71.70 E-value=10 Score=48.28 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=18.0
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL 83 (2355)
..+++|.+|+|+|||.++- .+...+
T Consensus 207 ~~~vlL~G~~GtGKT~la~-~la~~l 231 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE-GLAWRI 231 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH-HHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH-HHHHHH
Confidence 3569999999999996544 343343
No 207
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.57 E-value=11 Score=47.03 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.8
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
-+.+||.+|.|+|||+.+-
T Consensus 243 prGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSEEEECSCTTSSHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHH
Confidence 3679999999999996654
No 208
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=69.69 E-value=12 Score=46.43 Aligned_cols=50 Identities=12% Similarity=0.299 Sum_probs=38.8
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
+....|.+-+|+|||++.. .++.. .+.++|||+|+..++.|+++.++.|.
T Consensus 14 ~~~~~l~g~~gs~ka~~~a-~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVA-EIAER------HAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TCEEEEECCCTTHHHHHHH-HHHHH------SSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCeEEEeCCCchHHHHHHH-HHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 4568899999999996533 22221 24579999999999999999999875
No 209
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=69.13 E-value=9.6 Score=40.45 Aligned_cols=75 Identities=13% Similarity=0.093 Sum_probs=56.4
Q ss_pred CeEEEEEcccccHHHHHHHHHhc-----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccccCCCCc
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA-----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA------ARGIDAANV 334 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr-----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL------GEGLDLPaV 334 (2355)
.++||.++++..+..+++.+... ++.+..++|+....+.... +..+..+|+|+|.-. ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999888887764 6889999999887665443 445677999999521 234677888
Q ss_pred cEEEEecCC
Q psy8497 335 DLVINLEIP 343 (2355)
Q Consensus 335 DTVIIyDSP 343 (2355)
++||+-..+
T Consensus 160 ~~lViDEah 168 (220)
T 1t6n_A 160 KHFILDECD 168 (220)
T ss_dssp CEEEEESHH
T ss_pred CEEEEcCHH
Confidence 888865554
No 210
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=67.99 E-value=4.4 Score=48.20 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=31.1
Q ss_pred HHHHHHHc------CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 50 AAFPYVLN------GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 50 EALn~LLS------GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
..|..++. +.-++|.++.|+|||..++..+..... .+.+++||...
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~----~g~~vlyid~E 100 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAE 100 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEESS
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeCC
Confidence 35666664 244899999999999776655444433 35578888763
No 211
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=66.62 E-value=8.2 Score=46.93 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHcC--CcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 45 SPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 45 RPYQeEALn~LLSG--RNVILAAPTGSGKTLVALIAILerL 83 (2355)
.+-+..+|..++.. .-++|.+|||+||| +.+-+++..+
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKT-TlL~allg~l 191 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKS-TTLYAGLQEL 191 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHH-HHHHHHHhhc
Confidence 44566667666543 33789999999999 4444555444
No 212
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=66.15 E-value=27 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=17.1
Q ss_pred cEEEEccCCchHHHHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL 83 (2355)
+++|.+|+|+|||.++- ++...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~-ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR-ALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 49999999999997655 344343
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=65.85 E-value=19 Score=44.89 Aligned_cols=125 Identities=13% Similarity=0.145 Sum_probs=61.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
++|++++|+|||.++. .++.++.. .+.++++|.. .+ ..+.|+..+.... ++.+... ...
T Consensus 104 I~ivG~~GvGKTTl~~-kLA~~l~~---~G~kVllVd~D~~r~aa~~qL~~~~~~~-----~i~v~~~--~~~------- 165 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCS-KLAYYYQR---KGWKTCLICADTFRAGAFDQLKQNATKA-----RIPFYGS--YTE------- 165 (504)
T ss_dssp EEEECSTTSSHHHHHH-HHHHHHHH---TTCCEEEEEECCSSSHHHHHHHHHHHHH-----TCCEEEC--CCC-------
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHh---CCCeEEEEeccccchhHHHHHHHHhhcc-----CceEEcc--CCC-------
Confidence 7788999999996554 44444442 3566777764 22 3323322222222 2222111 100
Q ss_pred CcEEEECHHHH-HHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHH
Q psy8497 138 VQIVVGSPGRI-KQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATL 210 (2355)
Q Consensus 138 ~DILVTTPErL-LDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EILElL 210 (2355)
..|..+ .+.+.. +....++++|||=+=++... .+...+..+...+.+..-++.+.|+........+
T Consensus 166 -----~dp~~i~~~al~~--~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a 233 (504)
T 2j37_W 166 -----MDPVIIASEGVEK--FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA 233 (504)
T ss_dssp -----SCHHHHHHHHHHH--HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH
T ss_pred -----CCHHHHHHHHHHH--HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH
Confidence 012112 122211 11246789999988655321 2333344444434455557778887665544443
No 214
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=65.42 E-value=18 Score=45.33 Aligned_cols=129 Identities=19% Similarity=0.270 Sum_probs=61.8
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE-ccc-HH-HHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL-APT-RE-IAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL-VPT-RA-LAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+.|.++.|+|||...- .+...+. ..++.++|+ ..+ +. ...|+..|.... .+. ++.....
T Consensus 296 I~LVGpNGSGKTTLl~-~LAgll~---~~~G~V~l~g~D~~r~aa~eQL~~~~~r~-----~I~--vV~Q~~~------- 357 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIG-KLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRN-----NIP--VIAQHTG------- 357 (503)
T ss_dssp EEEECCTTSSHHHHHH-HHHHHHH---HTTCCEEEECCCTTCHHHHHHHHHHHHHH-----TCC--EECCSTT-------
T ss_pred EEEECCCcccHHHHHH-HHHHHhh---hcCCeEEEecCcccchhhHHHHHHHHHhc-----Cce--EEecccC-------
Confidence 6789999999995433 3333333 235667776 333 22 234544443322 111 1111100
Q ss_pred CcEEEECHHHHHHHHHhhcccCcCceEEEecccchhcccC-hHH---HHHHHHHhCC---CCceEEEEEeccChhHHHHH
Q psy8497 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVE---DITWIYSQLP---PMKQMLVVSATYSHDNLATL 210 (2355)
Q Consensus 138 ~DILVTTPErLLDLLdrr~LdLSkIdLLIVDEAHRLkN~G-F~S---rLeeILs~Lp---pnrQILLLSATLS~EILElL 210 (2355)
.. ....+.+.+... ....+++||||=+=++.... +.. .+..++..+. +..-+|.+.||...+.+..+
T Consensus 358 ~~----p~~tV~e~l~~a--~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~a 431 (503)
T 2yhs_A 358 AD----SASVIFDAIQAA--KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA 431 (503)
T ss_dssp CC----HHHHHHHHHHHH--HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHH
T ss_pred cC----HHHHHHHHHHHH--HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHH
Confidence 00 011122222211 12456799999886543211 212 2333333332 22346788999887766666
Q ss_pred HHh
Q psy8497 211 QKY 213 (2355)
Q Consensus 211 kKf 213 (2355)
..+
T Consensus 432 k~f 434 (503)
T 2yhs_A 432 KLF 434 (503)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 215
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=65.22 E-value=7.7 Score=46.46 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=52.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~D 139 (2355)
-++|.+|.|+|||..++..+...... ..+.++|||..--++... .++.++... -+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~--g~g~~vlyId~E~s~~~~---ra~~lGvd~--------------------d~ 84 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ--YPDAVCLFYDSEFGITPA---YLRSMGVDP--------------------ER 84 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH--CTTCEEEEEESSCCCCHH---HHHHTTCCG--------------------GG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEeccchhhHH---HHHHhCCCH--------------------HH
Confidence 37889999999997766555544431 236789999876555321 344443221 12
Q ss_pred EEEEC---HHHH-HHHHHh-hcccCcCceEEEecccchhc
Q psy8497 140 IVVGS---PGRI-KQMIKL-KYLNMDSVRLFIMDEADKLI 174 (2355)
Q Consensus 140 ILVTT---PErL-LDLLdr-r~LdLSkIdLLIVDEAHRLk 174 (2355)
+++.. .+.+ +.++.. ..+.-..+++||||-+..|.
T Consensus 85 llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 85 VIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp EEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred eEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 34443 3333 333221 11334568899999999775
No 216
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=65.13 E-value=46 Score=40.56 Aligned_cols=45 Identities=18% Similarity=-0.054 Sum_probs=28.5
Q ss_pred HHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 51 AFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 51 ALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.|+.++.| .-++|++++|+|||..++-.+..... ..+.++||+.-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~---~~g~~vl~~s~ 279 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGT---AMGKKVGLAML 279 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTT---TSCCCEEEEES
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHH---hcCCcEEEEec
Confidence 34555543 34899999999999655544443322 12567888874
No 217
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=62.92 E-value=12 Score=49.09 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=15.1
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.+|+.+|.|+|||+.+-
T Consensus 512 ~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp SCCEEESSTTSSHHHHHH
T ss_pred ceEEEecCCCCCchHHHH
Confidence 469999999999996544
No 218
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=61.99 E-value=86 Score=38.48 Aligned_cols=127 Identities=17% Similarity=0.221 Sum_probs=62.6
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHHH-HHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREIA-VQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRALA-qQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
++|+++.|+|||.+.. .+...+. ..+.+++++. +.+..+ .|+..+.... ++.+ +..+..
T Consensus 101 i~i~G~~GsGKTT~~~-~LA~~l~---~~g~~Vllvd~D~~r~aa~~qL~~~~~~~-----gv~v--~~~~~~------- 162 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAA-KLALYYK---GKGRRPLLVAADTQRPAAREQLRLLGEKV-----GVPV--LEVMDG------- 162 (425)
T ss_dssp EEEECCTTSSHHHHHH-HHHHHHH---TTTCCEEEEECCSSCHHHHHHHHHHHHHH-----TCCE--EECCTT-------
T ss_pred EEEECCCCCCHHHHHH-HHHHHHH---HcCCeEEEeeccccCchhHHHHHHhcccC-----CccE--EecCCC-------
Confidence 6678999999996544 3333443 2356677665 333333 3333333222 2222 221110
Q ss_pred CcEEEECHHHH-HHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHHH
Q psy8497 138 VQIVVGSPGRI-KQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQK 212 (2355)
Q Consensus 138 ~DILVTTPErL-LDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLkK 212 (2355)
.+|..+ ...+.. +....+++||||=+=++... .....+..+...+.+..-++.+.|+...+....+..
T Consensus 163 -----~~p~~i~~~~l~~--~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~ 232 (425)
T 2ffh_A 163 -----ESPESIRRRVEEK--ARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (425)
T ss_dssp -----CCHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH--HHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHH
Confidence 133333 223321 11246789999976544321 123344444554555555666777766555544443
No 219
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=61.34 E-value=7.8 Score=48.17 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.5
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
+..++|.+|+|+|||..+-
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4569999999999996543
No 220
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=60.90 E-value=8.2 Score=50.27 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.4
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
+..++|.+|+|+|||.++-
T Consensus 238 ~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCEEEECSCTTSSHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4569999999999995543
No 221
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=60.09 E-value=17 Score=39.31 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=53.7
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhc-----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccccCCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANA-----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA------ARGIDAA 332 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrEr-----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL------GEGLDLP 332 (2355)
...++||.++++..+..+.+.+... ++.+..++|+....++...+ ...+|+|+|.-. ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3458999999999999888888764 67888999998876655443 257899999531 2345666
Q ss_pred CccEEEEecC
Q psy8497 333 NVDLVINLEI 342 (2355)
Q Consensus 333 aVDTVIIyDS 342 (2355)
.+++||+-..
T Consensus 166 ~~~~lViDEa 175 (230)
T 2oxc_A 166 SIRLFILDEA 175 (230)
T ss_dssp GCCEEEESSH
T ss_pred cCCEEEeCCc
Confidence 7777775443
No 222
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=59.14 E-value=22 Score=47.83 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=51.2
Q ss_pred EEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEE
Q psy8497 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIV 141 (2355)
Q Consensus 62 ILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DIL 141 (2355)
+|.|..|+|||.+.+--+...+.. .....++|+|||...- +..-..+....+ .. ...+|-
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~-~~~~~~il~lVP~q~T----Ft~~~rl~~~l~---------~~------~~~~~~ 64 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRR-APFGKPIIFLVPDQMT----FLMEYELAKTPD---------MG------GMIRAQ 64 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHH-CTTSSCEEEECCGGGH----HHHHHHHTCCSS---------CS------EESSEE
T ss_pred EEEeCCCCChHHHHHHHHHHHHHh-CCCCCcEEEEecCccc----HHHHHHHHHhhh---------hc------ceeeeE
Confidence 788889999998777666555554 3345789999998743 222233322221 00 013588
Q ss_pred EECHHHHHHHHHhhcccCcCceEEEecccc
Q psy8497 142 VGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171 (2355)
Q Consensus 142 VTTPErLLDLLdrr~LdLSkIdLLIVDEAH 171 (2355)
|+|...|...+.+..- ....-|+|+..
T Consensus 65 V~TFhsla~~il~~~g---~~~~~ild~~~ 91 (1166)
T 3u4q_B 65 VFSFSRLAWRVLQHTG---GMSRPFLTSTG 91 (1166)
T ss_dssp EECHHHHHHHHHHHHS---CTTSCEECHHH
T ss_pred EecHHHHHHHHHHHcC---CCcccCcCHHH
Confidence 9999987644433221 12245667665
No 223
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=58.96 E-value=26 Score=39.79 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=56.4
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc-----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccccCCCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA-----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA------ARGIDAAN 333 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr-----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL------GEGLDLPa 333 (2355)
..++||.++++..+..+++.+... ++.+..++|+....+.... +..+..+|+|+|.-. ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 358999999999999888887764 7889999999887665544 345667899999421 23456778
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+++||+-...
T Consensus 153 ~~~vViDEaH 162 (391)
T 1xti_A 153 IKHFILDECD 162 (391)
T ss_dssp CSEEEECSHH
T ss_pred cCEEEEeCHH
Confidence 8888865443
No 224
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=58.68 E-value=94 Score=32.40 Aligned_cols=75 Identities=9% Similarity=0.067 Sum_probs=52.8
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc-----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----cc-cccCCCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA-----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----AA-RGIDAAN 333 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr-----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----LG-EGLDLPa 333 (2355)
..++||.++++..+..+.+.+... ++.+..++|+....+....+ ....+|+|+|.- +. ..+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 358999999999998888877653 57788899988765543322 356789999952 22 2346777
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+++||+-..+
T Consensus 147 ~~~lViDEah 156 (206)
T 1vec_A 147 VQMIVLDEAD 156 (206)
T ss_dssp CCEEEEETHH
T ss_pred CCEEEEEChH
Confidence 8888865443
No 225
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=57.63 E-value=15 Score=45.84 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=26.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHH-cCCcEEEEccCCchHHHH
Q psy8497 35 GLQENGFVKESPIQMAAFPYVL-NGYDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 35 ~Lqa~GF~eLRPYQeEALn~LL-SGRNVILAAPTGSGKTLV 74 (2355)
.|..+| .+.+.+.+.+.... .+..++|.+|||+|||..
T Consensus 238 ~l~~~G--~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 238 DLIEKG--TVPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHTT--SSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hHHhcC--CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344455 35566667676654 567899999999999943
No 226
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=57.56 E-value=8 Score=43.28 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHcCCc--EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 45 SPIQMAAFPYVLNGYD--AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 45 RPYQeEALn~LLSGRN--VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
.+-|..++..|+...+ .||.+.-|++||...+..++.... ..+..|.||+|+..-
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~---~~Gr~V~vLAp~~~s 92 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR---EQGREVQIIAADRRS 92 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH---HTTCCEEEECSTTHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH---hcCeEEEEEcCchHH
Confidence 3568888988876543 788999999999765544443333 367889999999765
No 227
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=56.71 E-value=25 Score=38.20 Aligned_cols=75 Identities=11% Similarity=0.143 Sum_probs=55.1
Q ss_pred CCeEEEEEcccccHHHHHHHHHh----cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----cc-cccCCCCc
Q psy8497 265 FNQCVIFSNYQLRPEVICENLAN----ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----AA-RGIDAANV 334 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrE----rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----LG-EGLDLPaV 334 (2355)
..++||.++++..+..+.+.+.. .++.+..++|+....+....+.. ..+|||+|.- +. ..+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45899999999998887776665 47899999999987776655543 4789999952 22 24577888
Q ss_pred cEEEEecCC
Q psy8497 335 DLVINLEIP 343 (2355)
Q Consensus 335 DTVIIyDSP 343 (2355)
.+||+-..+
T Consensus 178 ~~lViDEah 186 (242)
T 3fe2_A 178 TYLVLDEAD 186 (242)
T ss_dssp CEEEETTHH
T ss_pred cEEEEeCHH
Confidence 888865443
No 228
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=55.43 E-value=51 Score=35.76 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=47.1
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec-----ccc-cccCCCCc
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD-----LAA-RGIDAANV 334 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS-----ALG-EGLDLPaV 334 (2355)
..++||.++++..+..+.+.+... ++.+..+.|+..... .+..+..+..+|+|+|. .+. ..+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 458999999999999888888764 466777777765332 33445567789999993 222 23567778
Q ss_pred cEEEEecCC
Q psy8497 335 DLVINLEIP 343 (2355)
Q Consensus 335 DTVIIyDSP 343 (2355)
++||+-..+
T Consensus 175 ~~lViDEah 183 (237)
T 3bor_A 175 KMFVLDEAD 183 (237)
T ss_dssp CEEEEESHH
T ss_pred cEEEECCch
Confidence 888865444
No 229
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=55.27 E-value=17 Score=38.70 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCC--------CCCc
Q psy8497 68 GTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK--------RPVQ 139 (2355)
Q Consensus 68 GSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqi--------rq~D 139 (2355)
...|. ..++-++.. .....++||.|+++..+..+...+... ++.+..++|+....... ....
T Consensus 29 ~~~K~-~~L~~ll~~----~~~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 98 (185)
T 2jgn_A 29 ESDKR-SFLLDLLNA----TGKDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSP 98 (185)
T ss_dssp GGGHH-HHHHHHHHH----C-CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSS
T ss_pred cHHHH-HHHHHHHHh----cCCCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 35675 334444433 224678999999999988888888764 56788888875433221 2367
Q ss_pred EEEECHHHHHHHHHhhcccCcCceEEEe
Q psy8497 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIM 167 (2355)
Q Consensus 140 ILVTTPErLLDLLdrr~LdLSkIdLLIV 167 (2355)
|||+|. .+ ...+++..+++||.
T Consensus 99 vLvaT~-~~-----~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 99 ILVATA-VA-----ARGLDISNVKHVIN 120 (185)
T ss_dssp EEEEEC------------CCCSBSEEEE
T ss_pred EEEEcC-hh-----hcCCCcccCCEEEE
Confidence 999983 22 23446667777765
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=54.88 E-value=77 Score=36.73 Aligned_cols=126 Identities=16% Similarity=0.193 Sum_probs=61.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc--cH-HHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP--TR-EIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP--TR-ALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
+++.++.|+|||......+ ..+.. .+.+++++.- .+ ....|+..+.... ++.+ +.+..
T Consensus 101 i~i~G~~G~GKTT~~~~la-~~~~~---~g~~v~l~~~D~~r~~a~~ql~~~~~~~-----~v~v--~~~~~-------- 161 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLA-YFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQI-----GVPV--YGEPG-------- 161 (297)
T ss_dssp EEEECSSCSSTTHHHHHHH-HHHHH---TTCCEEEEECCCSSSHHHHHHHHHHHHH-----TCCE--ECCTT--------
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH---CCCeEEEEecCCCCHHHHHHHHHHhccC-----CeEE--EecCC--------
Confidence 5678999999996544333 33332 3556666652 22 3334544444332 2222 11110
Q ss_pred CcEEEECHHHHH-HHHHhhcccCcCceEEEecccchhc--cc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 138 VQIVVGSPGRIK-QMIKLKYLNMDSVRLFIMDEADKLI--NT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 138 ~DILVTTPErLL-DLLdrr~LdLSkIdLLIVDEAHRLk--N~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
-..|..+. ..+.. +....+++||||=+=++. .. .....+..+...+.+..-++.+.|+........+.
T Consensus 162 ----~~~p~~~~~~~l~~--~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~ 233 (297)
T 1j8m_F 162 ----EKDVVGIAKRGVEK--FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLAS 233 (297)
T ss_dssp ----CCCHHHHHHHHHHH--HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHH
T ss_pred ----CCCHHHHHHHHHHH--HHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHH
Confidence 02343332 22221 112467899999876654 21 12223333444445555566677765555444443
No 231
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=53.88 E-value=3 Score=44.94 Aligned_cols=40 Identities=10% Similarity=-0.144 Sum_probs=36.6
Q ss_pred CcccccccccCcchhhhhhccccCCCCCcCCCccccCCCC
Q psy8497 697 NDETSNDNKLTPVDFDYINDFVNQTPSETGDRPLVHGPNS 736 (2355)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~d~~l~~~~~~ 736 (2355)
.+++..+.++...+|+.+.+|++.+||.++|+|+..|++.
T Consensus 2 ~~v~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~ 41 (147)
T 3iu6_A 2 MNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD 41 (147)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC
T ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC
Confidence 4677788888999999999999999999999999999887
No 232
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=53.81 E-value=9.3 Score=40.75 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=24.7
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.-++|++++|+|||..++-.+...+.. .+.+++|+.-
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~---~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEE---YGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHH---HCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh---cCCCceeecc
Confidence 448999999999996655444443332 2456777764
No 233
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=53.14 E-value=31 Score=43.00 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=14.7
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+.++|.+|+|+|||+.+-
T Consensus 65 ~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp SEEEEECSSSSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 359999999999996543
No 234
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=52.54 E-value=58 Score=37.28 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhc-CC---ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-c-----ccccCCCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANA-NF---GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-A-----ARGIDAAN 333 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrEr-GI---KVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-L-----GEGLDLPa 333 (2355)
...++||.++++..+..+.+.|... ++ .+..++|+....++..... ..+|+|+|.- + ...+.+..
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 3569999999999998888888775 55 8899999998887665543 3589999942 1 12456778
Q ss_pred ccEEEEecCCC--CHhHHHHHhhccCCCCCccEEEEEEccc--CHHHHHHHHHhhc
Q psy8497 334 VDLVINLEIPH--DAATYLHRMGRAGRYGTRGLVITIVSAE--SLVKFHSLMGEIN 385 (2355)
Q Consensus 334 VDTVIIyDSP~--SPqSYIQRIGRAGRiGQkGkVIVLVSsd--DVEeIEsLrReLK 385 (2355)
.++||+-.... +...+.+.+.+..+......++.+.... ....+..+...+.
T Consensus 126 ~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~ 181 (494)
T 1wp9_A 126 VSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLG 181 (494)
T ss_dssp CSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHTT
T ss_pred ceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhcC
Confidence 88888655543 2223333333222222233445554332 2444555554443
No 235
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=52.11 E-value=33 Score=49.31 Aligned_cols=38 Identities=8% Similarity=0.056 Sum_probs=28.7
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.+.+++|.+|+|+|||..++..+..... .+.+++|+.-
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k----~Ge~~~Fit~ 1117 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDA 1117 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT----TTCCEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH----cCCeEEEEEc
Confidence 4577999999999999877766655544 3677888763
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=52.00 E-value=89 Score=38.24 Aligned_cols=127 Identities=17% Similarity=0.283 Sum_probs=60.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc--ccHHH-HHHHHHHHHHHhcccCCcEEEEEECCccccCCCCC
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA--PTREI-AVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP 137 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV--PTRAL-AqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq 137 (2355)
++++++.|+|||.+.. .+...+.. ..+.++++|. |.+.. ..|+..+.... ++.+ +..+..
T Consensus 103 I~ivG~~GvGKTT~a~-~LA~~l~~--~~G~kVllvd~D~~r~~a~~ql~~~~~~~-----~l~v--~~~~~~------- 165 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVG-KLGKFLRE--KHKKKVLVVSADVYRPAAIKQLETLAEQV-----GVDF--FPSDVG------- 165 (433)
T ss_dssp EEEECSTTSSHHHHHH-HHHHHHHH--TSCCCEEEEECCCSSTTHHHHHHHHHHHH-----TCEE--CCCCSS-------
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHH--hcCCeEEEEecCCCCccHHHHHHhhcccC-----CeeE--EeCCCC-------
Confidence 6678999999996655 33344442 1156677766 33333 23332222221 2222 111110
Q ss_pred CcEEEECHHHH-HHHHHhhcccCcCceEEEecccchhccc-ChHHHHHHHHHhCCCCceEEEEEeccChhHHHHHH
Q psy8497 138 VQIVVGSPGRI-KQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 138 ~DILVTTPErL-LDLLdrr~LdLSkIdLLIVDEAHRLkN~-GF~SrLeeILs~LppnrQILLLSATLS~EILElLk 211 (2355)
.+|..+ ...+.. +....+++||||=+=++... .....+..+...+.+..-++.+.|+........+.
T Consensus 166 -----~dp~~i~~~~l~~--~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~ 234 (433)
T 2xxa_A 166 -----QKPVDIVNAALKE--AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAK 234 (433)
T ss_dssp -----SCHHHHHHHHHHH--HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHH
T ss_pred -----CCHHHHHHHHHHH--HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHH
Confidence 134433 222321 11246789999987544321 12233334433444444455567776655544443
No 237
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=51.80 E-value=19 Score=43.87 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=22.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
.++|++++|+|||..+.. +...+.. .+.++++|.
T Consensus 101 vI~ivG~~GvGKTTla~~-La~~l~~---~G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAK-LARYIQK---RGLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHH-HHHHHHH---HHCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHH---cCCeEEEEe
Confidence 478899999999966543 3333332 245677765
No 238
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=51.40 E-value=25 Score=37.81 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=50.8
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----ccc--ccCCCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----AAR--GIDAAN 333 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----LGE--GLDLPa 333 (2355)
..++||.++++..+..+.+.+... ++.+..++|+.........+ ...+|+|+|.- +.. .+++..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 458999999999999888888765 37888899987655443333 36789999942 112 366777
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+++||+-..+
T Consensus 172 ~~~lViDEah 181 (236)
T 2pl3_A 172 LQMLVLDEAD 181 (236)
T ss_dssp CCEEEETTHH
T ss_pred ccEEEEeChH
Confidence 7877754443
No 239
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=50.93 E-value=15 Score=43.58 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=30.5
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
..+++|.++||+|||... ..++..+.. .+..++|+=|.-++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~---~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL---RGDRMVIVDPNGDML 94 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH---TTCEEEEEEETTHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH---CCCcEEEEeCCCchh
Confidence 467999999999999754 344444442 356788888988774
No 240
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=50.03 E-value=25 Score=42.50 Aligned_cols=41 Identities=17% Similarity=0.060 Sum_probs=24.5
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEccc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAPT 99 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVPT 99 (2355)
.-++|.+|.|+|||......++..+... -.....+||+.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 3488999999999965543333322210 0134678888643
No 241
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=48.89 E-value=26 Score=37.65 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=47.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcC
Q psy8497 90 QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDS 161 (2355)
Q Consensus 90 ggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSk 161 (2355)
..++||.|+++..+..+...+... ++.+..++|+..... ......|+|+|. .....+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------~~~~Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD------VASKGLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH------HHHTTCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC------chhcCCCccc
Confidence 457999999999999888888876 567888888753221 112378999993 1234567777
Q ss_pred ceEEEe
Q psy8497 162 VRLFIM 167 (2355)
Q Consensus 162 IdLLIV 167 (2355)
+++||.
T Consensus 123 v~~VI~ 128 (191)
T 2p6n_A 123 IQHVIN 128 (191)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 887776
No 242
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=48.83 E-value=1.3e+02 Score=36.06 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=27.3
Q ss_pred ceEEEecccchhcccC-h----HHHHHHHHHhCCCCce--EEEEEeccChhHHHHHH
Q psy8497 162 VRLFIMDEADKLINTG-F----VEDITWIYSQLPPMKQ--MLVVSATYSHDNLATLQ 211 (2355)
Q Consensus 162 IdLLIVDEAHRLkN~G-F----~SrLeeILs~LppnrQ--ILLLSATLS~EILElLk 211 (2355)
.+.+++|.+.+..... . ......+...+...+. +|++-+|...+....+.
T Consensus 241 ~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~~ 297 (359)
T 2og2_A 241 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAR 297 (359)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHH
T ss_pred CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHH
Confidence 4578899887643211 1 1112223334555566 88888886655554443
No 243
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=48.22 E-value=20 Score=38.04 Aligned_cols=75 Identities=12% Similarity=0.083 Sum_probs=46.7
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccccCCCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA------ARGIDAAN 333 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL------GEGLDLPa 333 (2355)
...++||.++++..+..+.+.+... ++.+..++|+....+.... +. ..+|+|+|... ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3458999999999998888877653 6788888988765544332 22 27899999521 23456777
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+++||+-..+
T Consensus 156 ~~~iViDEah 165 (224)
T 1qde_A 156 IKMFILDEAD 165 (224)
T ss_dssp CCEEEEETHH
T ss_pred CcEEEEcChh
Confidence 7888765443
No 244
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=48.18 E-value=39 Score=35.19 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=53.5
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc--CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----c-ccccCCCCccE
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA--NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----A-ARGIDAANVDL 336 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr--GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----L-GEGLDLPaVDT 336 (2355)
..++||.++++..+..+.+.+... .+.+..++|+.........+. ...+|+|+|.. + ...+++..+++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 458999999999999999888876 467888898887554444332 25789999952 1 22456777888
Q ss_pred EEEecCC
Q psy8497 337 VINLEIP 343 (2355)
Q Consensus 337 VIIyDSP 343 (2355)
||+-..+
T Consensus 148 iViDEah 154 (207)
T 2gxq_A 148 AVLDEAD 154 (207)
T ss_dssp EEEESHH
T ss_pred EEEEChh
Confidence 8865443
No 245
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=47.11 E-value=50 Score=36.73 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=53.4
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec-----cc--ccccCCCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD-----LA--ARGIDAAN 333 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS-----AL--GEGLDLPa 333 (2355)
..++||.++++..+..+.+.|... ++.+..+.|+.........+ ..+ .+|||+|. .+ ..++++..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 458999999999998888887764 56778888988766554433 233 78999994 11 22467788
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+.+||+-..+
T Consensus 202 l~~lViDEah 211 (262)
T 3ly5_A 202 LQCLVIDEAD 211 (262)
T ss_dssp CCEEEECSHH
T ss_pred CCEEEEcChH
Confidence 8888864443
No 246
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=46.55 E-value=26 Score=41.72 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=50.2
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----cccc-c-CCCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----AARG-I-DAAN 333 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----LGEG-L-DLPa 333 (2355)
..++||.++++..+..+.+.|... ++.+..++|+.+...+...+.. ..+|||+|.- +..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888777777664 8999999999876554433321 3689999943 2222 3 6777
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+++||+-..+
T Consensus 131 ~~~vViDEah 140 (556)
T 4a2p_A 131 FTLMIFDECH 140 (556)
T ss_dssp CSEEEEETGG
T ss_pred CCEEEEECCc
Confidence 8888875554
No 247
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=46.50 E-value=20 Score=42.14 Aligned_cols=42 Identities=29% Similarity=0.386 Sum_probs=28.7
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
.+.+++|.++||+|||...- .++..+. ..+.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~-~~~~~~~---~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAK-MLLLREY---MQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHH-HHHHHHH---TTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHH-HHHHHHH---HCCCEEEEEeCCcCH
Confidence 35679999999999995544 3443433 245678888787554
No 248
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=45.48 E-value=26 Score=37.42 Aligned_cols=75 Identities=7% Similarity=0.119 Sum_probs=50.0
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc---CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc------cccccCCCCcc
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA---NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL------AARGIDAANVD 335 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr---GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA------LGEGLDLPaVD 335 (2355)
..++||.++++..+..+.+.+... ++.+..++|+....++...+ . ...+|||+|.- ....+++..++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 458999999999999998888874 67888888887655443333 2 34789999942 12356678888
Q ss_pred EEEEecCC
Q psy8497 336 LVINLEIP 343 (2355)
Q Consensus 336 TVIIyDSP 343 (2355)
+||+-..+
T Consensus 170 ~lViDEah 177 (228)
T 3iuy_A 170 YLVIDEAD 177 (228)
T ss_dssp EEEECCHH
T ss_pred EEEEECHH
Confidence 88865443
No 249
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=44.33 E-value=30 Score=51.62 Aligned_cols=77 Identities=10% Similarity=0.126 Sum_probs=0.0
Q ss_pred cHH-HHHHHHHCCCCCCcHHHHHHHHHHHc----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHH
Q psy8497 29 EKP-IRQGLQENGFVKESPIQMAAFPYVLN----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIA 103 (2355)
Q Consensus 29 Lkp-LLK~Lqa~GF~eLRPYQeEALn~LLS----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALA 103 (2355)
+.. |.+.+...|+ .+.+.|..=+-.|++ .+.++|+||+|+|||.++- .+...+.........+.+|-|...-.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~-~L~~al~~l~~~~~~~~~iNPKait~ 950 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE-VYLEAIEQVDNIKSEAHVMDPKAITK 950 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH-HHHHHHTTTTTCEEEEEEECTTTSCH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH-HHHHHHHHhhCCCceEEEECCCCCch
Q ss_pred HHHH
Q psy8497 104 VQIT 107 (2355)
Q Consensus 104 qQ~a 107 (2355)
.|++
T Consensus 951 ~eLy 954 (3245)
T 3vkg_A 951 DQLF 954 (3245)
T ss_dssp HHHH
T ss_pred hhhc
No 250
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=43.68 E-value=17 Score=41.36 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=20.0
Q ss_pred HHHHHHcCCcEEEEccCCchHHHHHH
Q psy8497 51 AFPYVLNGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 51 ALn~LLSGRNVILAAPTGSGKTLVAL 76 (2355)
++..+..+.+++|.+|+|+|||..+-
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 34445567899999999999996543
No 251
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=43.56 E-value=31 Score=46.73 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=43.2
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhc--------CCCCCeEEEEcccHHHHHHHHHHHHHHh
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKL--------PVQQPQTIILAPTREIAVQITDVVRSVG 114 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ek--------r~qggRVLILVPTRALAqQ~anwLREFg 114 (2355)
..+|.|.-|+|||.+.+.-++..|... ......+|+|+=|+..+.++.+++++..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 459999999999988777777776531 1234579999999999999988888754
No 252
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=43.53 E-value=21 Score=42.36 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----cccc-c-CCCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----AARG-I-DAAN 333 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----LGEG-L-DLPa 333 (2355)
..++||.++++..+..+...+... ++.+..++|+.....+...+. ...+|||+|.- +..+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999998888777776654 899999999986554433322 14689999942 2222 3 5666
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+++||+-..+
T Consensus 128 ~~~vViDEah 137 (555)
T 3tbk_A 128 FTLMIFDECH 137 (555)
T ss_dssp CSEEEETTGG
T ss_pred CCEEEEECcc
Confidence 7888865544
No 253
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=43.33 E-value=30 Score=39.88 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=29.8
Q ss_pred HHHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 50 AAFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 50 EALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
..|..++.| .-+||++++|+|||..++..+..... .+.++||+..-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g~~vl~~slE 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----NDDVVNLHSLE 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TTCEEEEEESS
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEECC
Confidence 355666643 34899999999999655544443333 24678888743
No 254
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=42.76 E-value=24 Score=36.40 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcE
Q psy8497 69 TGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQI 140 (2355)
Q Consensus 69 SGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DI 140 (2355)
..|. ..+..++... ...++||.|+++..+..+.+.+... ++.+..++|+..... ......|
T Consensus 20 ~~K~-~~L~~ll~~~-----~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~v 88 (163)
T 2hjv_A 20 ENKF-SLLKDVLMTE-----NPDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRY 88 (163)
T ss_dssp GGHH-HHHHHHHHHH-----CCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred HHHH-HHHHHHHHhc-----CCCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 4565 3344444332 3567999999999988888888775 567888888753221 1223789
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecc
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDE 169 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDE 169 (2355)
||+|. .....+++..+++||.-.
T Consensus 89 lv~T~------~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 89 LVATD------VAARGIDIENISLVINYD 111 (163)
T ss_dssp EEECG------GGTTTCCCSCCSEEEESS
T ss_pred EEECC------hhhcCCchhcCCEEEEeC
Confidence 99993 123455677777777633
No 255
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=42.07 E-value=74 Score=35.52 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=54.9
Q ss_pred HHhcCCCCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccc
Q psy8497 259 LLSQTPFNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA------ARG 328 (2355)
Q Consensus 259 LLerl~kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL------GEG 328 (2355)
.+......++||.++++..+..+++.+... ++.+..++|+....+....+. ..+|+|+|.-. ...
T Consensus 68 ~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~ 142 (367)
T 1hv8_A 68 LVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGT 142 (367)
T ss_dssp HSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTC
T ss_pred HhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCC
Confidence 333334568999999999988888887763 677888999887665544433 46899999421 123
Q ss_pred cCCCCccEEEEecCC
Q psy8497 329 IDAANVDLVINLEIP 343 (2355)
Q Consensus 329 LDLPaVDTVIIyDSP 343 (2355)
+++..+++||+-...
T Consensus 143 ~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 143 LNLKNVKYFILDEAD 157 (367)
T ss_dssp SCTTSCCEEEEETHH
T ss_pred cccccCCEEEEeCch
Confidence 567778887755443
No 256
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=41.73 E-value=15 Score=39.05 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCchHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVAL 76 (2355)
.++.++|.+++|+|||.++-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 45679999999999996654
No 257
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=41.33 E-value=40 Score=38.74 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=49.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccC
Q psy8497 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNM 159 (2355)
Q Consensus 88 ~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdL 159 (2355)
....++||.|+++..+..+.+.+.+. ++.+..++|+...... .....|||+|. .....+++
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi 342 (417)
T 2i4i_A 274 GKDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA------VAARGLDI 342 (417)
T ss_dssp CTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH------HHHTTSCC
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhcCCCc
Confidence 35778999999999998888888775 5678888887543211 12367999994 22346677
Q ss_pred cCceEEEe
Q psy8497 160 DSVRLFIM 167 (2355)
Q Consensus 160 SkIdLLIV 167 (2355)
..+++||.
T Consensus 343 p~v~~Vi~ 350 (417)
T 2i4i_A 343 SNVKHVIN 350 (417)
T ss_dssp CCEEEEEE
T ss_pred ccCCEEEE
Confidence 78887775
No 258
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=41.01 E-value=15 Score=37.87 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=15.7
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.++|.+++|+|||.++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568999999999996655
No 259
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=40.24 E-value=62 Score=36.68 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=53.9
Q ss_pred CCCeEEEEEcccccHHHHHHHHHh----cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccccCCCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLAN----ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA------ARGIDAAN 333 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrE----rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL------GEGLDLPa 333 (2355)
...++||.++++..+..+.+.+.. .++.+..++|+....+....+. ..+|+|+|.-. ...+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345999999999999888877765 3678899999988766655544 46799999421 22455667
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+++||+-...
T Consensus 163 ~~~vIiDEah 172 (394)
T 1fuu_A 163 IKMFILDEAD 172 (394)
T ss_dssp CCEEEEETHH
T ss_pred CcEEEEEChH
Confidence 7888865544
No 260
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=40.18 E-value=48 Score=36.60 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=15.8
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
..+++|.+|+|+|||.++-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999996544
No 261
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=40.07 E-value=55 Score=38.05 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=15.8
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
..+++|.+|+|+|||.++-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 3579999999999996654
No 262
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=39.83 E-value=22 Score=42.30 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=18.3
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
+..++|.+|||+||| +.+-+++..+.
T Consensus 123 ~g~i~I~GptGSGKT-TlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKS-TTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHH-HHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHH-HHHHHHHhccc
Confidence 345889999999999 44445555444
No 263
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=39.61 E-value=28 Score=41.12 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCchHHH
Q psy8497 57 NGYDAIVQSKSGTGKSI 73 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTL 73 (2355)
.+..++|++|||+|||.
T Consensus 174 ~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 174 LERVIVVAGETGSGKTT 190 (361)
T ss_dssp TTCCEEEEESSSSCHHH
T ss_pred cCCEEEEECCCCCCHHH
Confidence 57789999999999994
No 264
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=39.42 E-value=36 Score=50.14 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=31.8
Q ss_pred HHHHHHHCCCCCCcHHHHH-HH---HHHHcCCcEEEEccCCchHHHHHHH
Q psy8497 32 IRQGLQENGFVKESPIQMA-AF---PYVLNGYDAIVQSKSGTGKSIVFVV 77 (2355)
Q Consensus 32 LLK~Lqa~GF~eLRPYQeE-AL---n~LLSGRNVILAAPTGSGKTLVALI 77 (2355)
|.+.+...++ .+.+.+.. ++ ..+...+.++|+||||+|||.++-+
T Consensus 894 i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 894 LKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 7778888888 45555533 33 2334567899999999999976553
No 265
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=39.37 E-value=1e+02 Score=35.22 Aligned_cols=75 Identities=17% Similarity=0.110 Sum_probs=53.6
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----c-ccccCCCCc
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----A-ARGIDAANV 334 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----L-GEGLDLPaV 334 (2355)
..++||.++++..+..+.+.+... ++.+..++|+......... ..+..+|+|+|.- + ...+++..+
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 458999999999998888877754 6788889998875543322 2457789999942 2 233567778
Q ss_pred cEEEEecCC
Q psy8497 335 DLVINLEIP 343 (2355)
Q Consensus 335 DTVIIyDSP 343 (2355)
++||+-...
T Consensus 165 ~~vIiDEaH 173 (400)
T 1s2m_A 165 SLFIMDEAD 173 (400)
T ss_dssp CEEEEESHH
T ss_pred CEEEEeCch
Confidence 888866554
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=39.36 E-value=13 Score=36.99 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=13.8
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
-++|.+++|+|||.++-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999996544
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=39.09 E-value=18 Score=41.02 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=18.8
Q ss_pred HHcCCcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 55 VLNGYDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 55 LLSGRNVILAAPTGSGKTLVALIAILerL 83 (2355)
+..+.-++|.+|+|+|||.. +-.++..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl-l~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT-IASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH-HHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHH-HHHHHHhC
Confidence 33455689999999999943 43444433
No 268
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=39.09 E-value=1.5e+02 Score=32.14 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=52.4
Q ss_pred CeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccccCCCCcc
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA------ARGIDAANVD 335 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL------GEGLDLPaVD 335 (2355)
.++||.++++..+..+.+.+... ++.+..++|+.........+ ....+|+|+|.-. ...+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 58999999999998887777653 56788889888755443332 3467899999521 2235777888
Q ss_pred EEEEecCC
Q psy8497 336 LVINLEIP 343 (2355)
Q Consensus 336 TVIIyDSP 343 (2355)
+||+-..+
T Consensus 177 ~lViDEah 184 (253)
T 1wrb_A 177 YIVLDEAD 184 (253)
T ss_dssp EEEEETHH
T ss_pred EEEEeCHH
Confidence 88865544
No 269
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=38.99 E-value=37 Score=39.50 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHCCCCCCcHHHHHHHHHHHcC---C-cEEEEccCCchHHHHHH
Q psy8497 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNG---Y-DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 28 lLkpLLK~Lqa~GF~eLRPYQeEALn~LLSG---R-NVILAAPTGSGKTLVAL 76 (2355)
.-.+|.+.|.-.|+. +-.+-.....|+... + .++|.+|.|+|||+.+.
T Consensus 71 ~~n~i~~~l~~qg~~-~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 71 SSNRIYKILELNGYD-PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GGCHHHHHHHHTTCC-HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred chHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 344588888888874 333333333444432 3 38999999999996655
No 270
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=38.55 E-value=30 Score=40.18 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=15.9
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
..+++|.+|+|+|||.++-
T Consensus 51 ~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999997654
No 271
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=38.49 E-value=45 Score=34.10 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=22.6
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREI 102 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRAL 102 (2355)
-++|.+++|+|||.++- .+...+.. .+..+.++ |...+
T Consensus 3 ~I~i~G~~GsGKsT~~~-~L~~~l~~---~g~~~~~~-~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA-KVKEILDN---QGINNKII-NYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHH-HHHHHHHT---TTCCEEEE-EHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHHh---cCceEEEE-ECChH
Confidence 37899999999996544 33444431 23334444 65444
No 272
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=38.19 E-value=22 Score=37.01 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=47.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCc
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMD 160 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLS 160 (2355)
...++||.|+++..+..+...+... ++.+..++|+..... ......|||+|. .....+++.
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~ 101 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVK 101 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcc
Confidence 4678999999999988888887764 567888888753221 122378999993 123455677
Q ss_pred CceEEEe
Q psy8497 161 SVRLFIM 167 (2355)
Q Consensus 161 kIdLLIV 167 (2355)
.+++||.
T Consensus 102 ~~~~Vi~ 108 (175)
T 2rb4_A 102 QVTIVVN 108 (175)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 7887774
No 273
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=38.17 E-value=49 Score=42.61 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=49.4
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----cccc-c-CCCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----AARG-I-DAAN 333 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----LGEG-L-DLPa 333 (2355)
..++||.++++..+..+.+.|... ++.+..++|+.+...+...+. ...+|||+|.- +..+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 569999999999888877776654 899999999987655443332 25789999942 1222 3 5666
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+++||+-..+
T Consensus 372 ~~~iViDEaH 381 (797)
T 4a2q_A 372 FTLMIFDECH 381 (797)
T ss_dssp CSEEEETTGG
T ss_pred CCEEEEECcc
Confidence 7888865544
No 274
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=37.74 E-value=38 Score=34.90 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=48.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCc
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMD 160 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLS 160 (2355)
...++||.|+++..+..+...+... ++.+..++|+..... ......|||+|. .....+++.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~ 97 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQ 97 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCcc
Confidence 3568999999999988888888775 567888888754221 123368999993 123455677
Q ss_pred CceEEEecc
Q psy8497 161 SVRLFIMDE 169 (2355)
Q Consensus 161 kIdLLIVDE 169 (2355)
.+++||.=.
T Consensus 98 ~~~~Vi~~~ 106 (165)
T 1fuk_A 98 QVSLVINYD 106 (165)
T ss_dssp SCSEEEESS
T ss_pred cCCEEEEeC
Confidence 777776633
No 275
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=37.31 E-value=2e+02 Score=34.21 Aligned_cols=75 Identities=13% Similarity=0.052 Sum_probs=54.6
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----cc-cccCCCCc
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----AA-RGIDAANV 334 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----LG-EGLDLPaV 334 (2355)
..++||.++++..+..+.+.+... ++.+..++|+....++...+ ....+|||+|.- +. ..+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 358999999999999888887764 57788899999876554433 246789999942 22 23567888
Q ss_pred cEEEEecCC
Q psy8497 335 DLVINLEIP 343 (2355)
Q Consensus 335 DTVIIyDSP 343 (2355)
++||+-..+
T Consensus 205 ~~lVlDEah 213 (434)
T 2db3_A 205 RFVVLDEAD 213 (434)
T ss_dssp CEEEEETHH
T ss_pred CeEEEccHh
Confidence 888865443
No 276
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=37.13 E-value=19 Score=42.80 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
.+..++|++|||+|||.. +-+++..+.
T Consensus 135 ~g~~i~ivG~~GsGKTTl-l~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT-IASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHH-HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhhcC
Confidence 355689999999999943 444444443
No 277
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=37.06 E-value=1.6e+02 Score=36.00 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHc-----CCcEEEEccCCchHHHHHH
Q psy8497 45 SPIQMAAFPYVLN-----GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 45 RPYQeEALn~LLS-----GRNVILAAPTGSGKTLVAL 76 (2355)
+.-..+.|..++. .+-++|.|+.|.|||..+.
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~ 165 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAA 165 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHH
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHH
Confidence 5555666655553 1238899999999996554
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=36.95 E-value=18 Score=36.95 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=14.5
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.-++|.+++|+|||.++-
T Consensus 4 ~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999996543
No 279
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=36.82 E-value=43 Score=40.84 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=30.4
Q ss_pred HHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 51 AFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 51 ALn~LLSG----RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
.|+.++.| .-+||+|++|.|||..++-.+..... .+.+++|+..-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~----~g~~vl~fSlE 234 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----NDDVVNLHSLE 234 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH----TTCEEEEECSS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH----cCCEEEEEECC
Confidence 45666643 34899999999999665544444443 26688888743
No 280
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=36.20 E-value=30 Score=44.08 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=25.2
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
-+++|++.||+|||.+.-..++..+........++++|=|.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 46999999999999655444444443322233445555565
No 281
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=36.13 E-value=38 Score=48.01 Aligned_cols=97 Identities=9% Similarity=0.180 Sum_probs=59.4
Q ss_pred HHHHHHcC------CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEE
Q psy8497 51 AFPYVLNG------YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124 (2355)
Q Consensus 51 ALn~LLSG------RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVv 124 (2355)
+|..++.. +-+.|.+|.|+|||..++..+.+.-. .+..+++|.+--+|-... ++.++-.+
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~----~g~~~~~i~~e~~~~~~~---~~~~Gv~~------- 1483 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHALDPIY---ARKLGVDI------- 1483 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEECTTSCCCHHH---HHHTTCCG-------
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHh----cCCeEEEEecCCCCCHHH---HHHcCCCH-------
Confidence 45555542 44889999999999877755544322 477899998876664333 55554332
Q ss_pred EECCccccCCCCCCcEEEECHH---HHHHHHHhhcccCcCceEEEecccchhcc
Q psy8497 125 FIGGTQVERPKRPVQIVVGSPG---RIKQMIKLKYLNMDSVRLFIMDEADKLIN 175 (2355)
Q Consensus 125 ytGGkq~rkqirq~DILVTTPE---rLLDLLdrr~LdLSkIdLLIVDEAHRLkN 175 (2355)
-+++|.-|+ ..+..... .+.-..+++||||.+-.|..
T Consensus 1484 -------------~~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 -------------DNLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -------------GGCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred -------------HHeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 125666664 33332221 12234577999999987764
No 282
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=35.69 E-value=44 Score=44.90 Aligned_cols=76 Identities=12% Similarity=0.230 Sum_probs=56.5
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CC----ccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-ccccc-CCCCc
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NF----GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-AARGI-DAANV 334 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GI----KVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-LGEGL-DLPaV 334 (2355)
..++||.++++..+..+.+.|... ++ .+..++|+++..++...++.+.. .+|||+|.. +..-+ .+..+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 468999999999998888877653 56 78999999999888888887777 899999952 11111 15567
Q ss_pred cEEEEecC
Q psy8497 335 DLVINLEI 342 (2355)
Q Consensus 335 DTVIIyDS 342 (2355)
++||+-..
T Consensus 177 ~~lViDEa 184 (1054)
T 1gku_B 177 DFIFVDDV 184 (1054)
T ss_dssp SEEEESCH
T ss_pred CEEEEeCh
Confidence 77775443
No 283
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=35.59 E-value=36 Score=35.69 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=26.8
Q ss_pred HHHHHHc-----CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 51 AFPYVLN-----GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 51 ALn~LLS-----GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
+|..++. +.-++|.+|+|+|||..+...+. . .+.+++|+.-
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~----~~~~v~~i~~ 53 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L----SGKKVAYVDT 53 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H----HCSEEEEEES
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H----cCCcEEEEEC
Confidence 4555554 34489999999999965544333 2 2567787763
No 284
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=35.39 E-value=34 Score=42.99 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=18.4
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
+.+++|++.||+|||.+.-..++..+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456999999999999554433333333
No 285
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=34.94 E-value=36 Score=37.86 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=17.5
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ 84 (2355)
.++|.+|+|+|||.++- ++...+.
T Consensus 49 ~~ll~G~~GtGKt~la~-~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK-TLAATLF 72 (311)
T ss_dssp EEEEESCSSSSHHHHHH-HHHHHHH
T ss_pred EEEEECCCCcCHHHHHH-HHHHHHc
Confidence 58999999999996654 4444443
No 286
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=34.52 E-value=19 Score=43.09 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.2
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
-++|.+|||+|||.+++
T Consensus 42 lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999996544
No 287
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=34.50 E-value=40 Score=37.82 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=23.2
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
|.-++|.+|+|+|||.... .++..+.. ..+.+++|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~-~ia~~~~~--~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVR-QQALQWGT--AMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHH-HHHHHHHH--TSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHH-HHHHHHHH--HcCCeEEEEe
Confidence 4558999999999995544 33333331 1243677765
No 288
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=34.28 E-value=68 Score=38.99 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=52.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCC--------CCCCcEEEECHHHHHHHHHhhcccC
Q psy8497 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP--------KRPVQIVVGSPGRIKQMIKLKYLNM 159 (2355)
Q Consensus 88 ~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkq--------irq~DILVTTPErLLDLLdrr~LdL 159 (2355)
....++||.|+++.-+..+...+.+... .++.+..++|+...... ....+|||+|- .....+++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~GiDi 408 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDF 408 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCC
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------hhhcCCCc
Confidence 4567899999999999999999887643 25678888887543211 12378999994 22356677
Q ss_pred cCceEEEecc
Q psy8497 160 DSVRLFIMDE 169 (2355)
Q Consensus 160 SkIdLLIVDE 169 (2355)
..+++||.-.
T Consensus 409 p~v~~VI~~~ 418 (563)
T 3i5x_A 409 PNVHEVLQIG 418 (563)
T ss_dssp TTCCEEEEES
T ss_pred ccCCEEEEEC
Confidence 7788877544
No 289
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=33.81 E-value=99 Score=35.32 Aligned_cols=100 Identities=11% Similarity=0.048 Sum_probs=61.4
Q ss_pred CeEEEEEcccccHHHHHHHHHhc-----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc------c-cccCCCC
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA-----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA------A-RGIDAAN 333 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr-----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL------G-EGLDLPa 333 (2355)
.++||.++++..+..+...+... ++.+..+.|+...... .....+|||+|.-- . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 48999999999999888877764 4667777776542211 13456899999532 1 3567888
Q ss_pred ccEEEEecCCC-----CHhHHHHHhhccCCCCCccEEEEEEcccCH
Q psy8497 334 VDLVINLEIPH-----DAATYLHRMGRAGRYGTRGLVITIVSAESL 374 (2355)
Q Consensus 334 VDTVIIyDSP~-----SPqSYIQRIGRAGRiGQkGkVIVLVSsdDV 374 (2355)
+.+||+-..+. .....+.++-+..+ ....+++|...-..
T Consensus 236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~~--~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLP--RNCQMLLFSATFED 279 (300)
T ss_dssp CSEEEETTHHHHHHSTTHHHHHHHHHTTSC--TTCEEEEEESCCCH
T ss_pred ceEEEEeCHHHHhhccCcHHHHHHHHHhCC--CCCEEEEEeccCCH
Confidence 89888655442 33344444544433 23445555444333
No 290
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=33.67 E-value=66 Score=33.68 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcE
Q psy8497 69 TGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQI 140 (2355)
Q Consensus 69 SGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DI 140 (2355)
..|. ..+..++.. ....++||.|+++..+..+...+... ++.+..++|+..... ......|
T Consensus 16 ~~K~-~~L~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~v 84 (172)
T 1t5i_A 16 NEKN-RKLFDLLDV-----LEFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRI 84 (172)
T ss_dssp GGHH-HHHHHHHHH-----SCCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred HHHH-HHHHHHHHh-----CCCCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcE
Confidence 4565 334444432 23568999999999988888888775 567888888753221 1234789
Q ss_pred EEECHHHHHHHHHhhcccCcCceEEEecc
Q psy8497 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDE 169 (2355)
Q Consensus 141 LVTTPErLLDLLdrr~LdLSkIdLLIVDE 169 (2355)
+|+|. . ....+++..+++||.=.
T Consensus 85 LvaT~-~-----~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 85 LVATN-L-----FGRGMDIERVNIAFNYD 107 (172)
T ss_dssp EEESS-C-----CSTTCCGGGCSEEEESS
T ss_pred EEECC-c-----hhcCcchhhCCEEEEEC
Confidence 99993 1 23455667777777533
No 291
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=33.62 E-value=22 Score=35.75 Aligned_cols=17 Identities=24% Similarity=0.028 Sum_probs=14.0
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
-++|.+++|+|||.++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996544
No 292
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=33.57 E-value=21 Score=39.87 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=13.4
Q ss_pred EEEEccCCchHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 61 VILAAPTGSGKTLVAL 76 (2355)
++|.+|||+|||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6889999999996544
No 293
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=33.17 E-value=37 Score=39.73 Aligned_cols=17 Identities=35% Similarity=0.562 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCchHHH
Q psy8497 57 NGYDAIVQSKSGTGKSI 73 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTL 73 (2355)
.+..++|.+|+|+|||.
T Consensus 170 ~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HTCCEEEEESTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57789999999999994
No 294
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=32.86 E-value=27 Score=36.07 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCchHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVAL 76 (2355)
....++|.+++|+|||.++-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 35679999999999996544
No 295
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=32.82 E-value=39 Score=36.64 Aligned_cols=67 Identities=12% Similarity=0.228 Sum_probs=48.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcC
Q psy8497 90 QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDS 161 (2355)
Q Consensus 90 ggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSk 161 (2355)
..++||.|+++.-+..+...+... ++.+..++|+..... ......|+|+|. .....+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCcc
Confidence 568999999999988888888776 567888888754221 122378999993 2234567777
Q ss_pred ceEEEe
Q psy8497 162 VRLFIM 167 (2355)
Q Consensus 162 IdLLIV 167 (2355)
+.+||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 777774
No 296
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=32.75 E-value=36 Score=37.43 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=26.9
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEccCCchHHHH
Q psy8497 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 41 F~eLRPYQeEALn~LLSGRNVILAAPTGSGKTLV 74 (2355)
+...+.-|..++.-+..|.-+.|.+|.|+|||..
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 4344556777888888888899999999999954
No 297
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=32.71 E-value=28 Score=39.99 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.9
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
..+++|.+|+|+|||.++-
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TSCEEEESCTTSCHHHHHH
T ss_pred CCcEEEECCCCchHHHHHH
Confidence 5679999999999996543
No 298
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=32.52 E-value=25 Score=36.90 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=15.5
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
+..++|.+++|+|||.++-
T Consensus 10 ~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568999999999996543
No 299
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=32.37 E-value=29 Score=36.94 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=48.9
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc--------CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----ccc-ccC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA--------NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----AAR-GID 330 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr--------GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----LGE-GLD 330 (2355)
..++||.++++..+..+.+.+... ++.+..++|+....+.... + ....+|+|+|.. +.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999998888777653 5778888888754332111 1 245689999942 222 345
Q ss_pred CCCccEEEEecC
Q psy8497 331 AANVDLVINLEI 342 (2355)
Q Consensus 331 LPaVDTVIIyDS 342 (2355)
+..+++||+-..
T Consensus 148 ~~~~~~lViDEa 159 (219)
T 1q0u_A 148 VHTAHILVVDEA 159 (219)
T ss_dssp GGGCCEEEECSH
T ss_pred cCcceEEEEcCc
Confidence 667777775443
No 300
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=32.28 E-value=33 Score=39.16 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhc--------CCCC----CeEEEEcccHHH-HHHHHHHHH
Q psy8497 50 AAFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKL--------PVQQ----PQTIILAPTREI-AVQITDVVR 111 (2355)
Q Consensus 50 EALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ek--------r~qg----gRVLILVPTRAL-AqQ~anwLR 111 (2355)
..|+.++.+ .-++|.+++|+|||..++..+....... ...+ .+++||.-...+ ..++..+++
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 345666642 3489999999999966554444321110 0112 578888865432 344555555
Q ss_pred HH
Q psy8497 112 SV 113 (2355)
Q Consensus 112 EF 113 (2355)
.+
T Consensus 165 ~~ 166 (322)
T 2i1q_A 165 HA 166 (322)
T ss_dssp HH
T ss_pred Hc
Confidence 55
No 301
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=31.72 E-value=29 Score=35.32 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=14.7
Q ss_pred CCcEEEEccCCchHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVA 75 (2355)
+..++|.+++|+|||.++
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356899999999999553
No 302
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=31.70 E-value=27 Score=36.64 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=14.6
Q ss_pred cCCcEEEEccCCchHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLV 74 (2355)
.++-++|.+|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 355688999999999944
No 303
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=31.24 E-value=46 Score=41.43 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCcEEEEccCCchHHHHH
Q psy8497 47 IQMAAFPYVLNGYDAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 47 YQeEALn~LLSGRNVILAAPTGSGKTLVA 75 (2355)
.-..++..+..+.+++|.||+|+|||..+
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 33445555667889999999999999554
No 304
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=31.05 E-value=1.1e+02 Score=35.36 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=54.0
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEec-----ccc-cccCCCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD-----LAA-RGIDAAN 333 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTS-----ALG-EGLDLPa 333 (2355)
...++||.++++..+..+++.|... ++.+..++|+....+....+. ....|+|+|. .+. ..+++..
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 3469999999999999888877764 467888899888766554443 2458999994 222 2456777
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+++||+-..+
T Consensus 180 ~~~vViDEah 189 (410)
T 2j0s_A 180 IKMLVLDEAD 189 (410)
T ss_dssp CCEEEEETHH
T ss_pred eeEEEEccHH
Confidence 8888865443
No 305
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=31.01 E-value=55 Score=37.24 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC----CcEEEEccCCchHHHHHHHHHHHHH
Q psy8497 30 KPIRQGLQENGFVKESPIQMAAFPYVLNG----YDAIVQSKSGTGKSIVFVVAALNKL 83 (2355)
Q Consensus 30 kpLLK~Lqa~GF~eLRPYQeEALn~LLSG----RNVILAAPTGSGKTLVALIAILerL 83 (2355)
..|.+.|.=.|+ .+-.+ ...+..++.+ +.+||.+|.|+|||..+ .+++..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 345555554443 44444 4444444444 24888999999999554 3554443
No 306
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=30.81 E-value=45 Score=41.59 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=52.3
Q ss_pred CeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----cccc-c-CCCCc
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----AARG-I-DAANV 334 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----LGEG-L-DLPaV 334 (2355)
.++||.++++..+....+.|... ++.+..++|+.....+...+. ...+|||+|.- +..+ + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999998888877777665 789999999886433332222 14789999942 2223 3 56678
Q ss_pred cEEEEecCCC
Q psy8497 335 DLVINLEIPH 344 (2355)
Q Consensus 335 DTVIIyDSP~ 344 (2355)
++||+-..+.
T Consensus 138 ~~vViDEaH~ 147 (696)
T 2ykg_A 138 TLMIFDECHN 147 (696)
T ss_dssp SEEEEETGGG
T ss_pred cEEEEeCCCc
Confidence 8888765553
No 307
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=30.69 E-value=41 Score=35.02 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=21.0
Q ss_pred CcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEE
Q psy8497 59 YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIIL 96 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLIL 96 (2355)
.-++|.+++|+|||.++- .+...+.. .+..++++
T Consensus 14 ~~i~l~G~~GsGKsT~~~-~L~~~l~~---~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIAT-RLADLLQK---EGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHHHHHH---TTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHH-HHHHHHHh---cCCeEEEe
Confidence 348899999999996544 33334432 24445554
No 308
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=30.04 E-value=77 Score=39.11 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=52.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccC
Q psy8497 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNM 159 (2355)
Q Consensus 88 ~qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdL 159 (2355)
....++||.|+++..+..+.+.+.+... .++.+..++|+..... ......|||+|- .....+++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~~~~GiDi 357 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDF 357 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCC
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------hhhcCCCc
Confidence 4567899999999999999999987643 2567888888753221 112378999994 22346677
Q ss_pred cCceEEEecc
Q psy8497 160 DSVRLFIMDE 169 (2355)
Q Consensus 160 SkIdLLIVDE 169 (2355)
..+++||.-.
T Consensus 358 p~v~~VI~~~ 367 (579)
T 3sqw_A 358 PNVHEVLQIG 367 (579)
T ss_dssp TTCCEEEEES
T ss_pred ccCCEEEEcC
Confidence 7788877544
No 309
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=29.99 E-value=25 Score=36.41 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCchHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLV 74 (2355)
.+.-++|.+|+|+|||.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345588999999999954
No 310
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=29.86 E-value=30 Score=37.10 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=14.0
Q ss_pred cCCcEEEEccCCchHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLV 74 (2355)
.++-++|.+|+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999944
No 311
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=29.66 E-value=30 Score=37.22 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=14.0
Q ss_pred CCcEEEEccCCchHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLV 74 (2355)
+.-++|.+|+|+|||.+
T Consensus 8 g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CcEEEEECcCCCCHHHH
Confidence 44588999999999954
No 312
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=29.56 E-value=27 Score=36.38 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCchHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVA 75 (2355)
.+.-++|.+|+|+|||.++
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556889999999999543
No 313
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=29.44 E-value=21 Score=39.07 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.5
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
.+.++|.+|+|+|||.++-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999996654
No 314
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=29.42 E-value=23 Score=36.56 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.2
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
+..++|.+++|+|||.++-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4458899999999996544
No 315
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=29.14 E-value=31 Score=35.31 Aligned_cols=19 Identities=16% Similarity=0.178 Sum_probs=15.1
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
+.-++|.+++|+|||.++-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999996543
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=29.10 E-value=33 Score=36.49 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.0
Q ss_pred HcCCcEEEEccCCchHHHHH
Q psy8497 56 LNGYDAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 56 LSGRNVILAAPTGSGKTLVA 75 (2355)
..+.-++|++|+|+|||.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 34567899999999999543
No 317
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=29.05 E-value=30 Score=35.09 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.3
Q ss_pred EEEEccCCchHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 61 VILAAPTGSGKTLVAL 76 (2355)
++|.+++|+|||.++-
T Consensus 5 I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEecCCCCCHHHHHH
Confidence 7889999999996543
No 318
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=29.02 E-value=21 Score=39.07 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=13.5
Q ss_pred CcEEEEccCCchHHHH
Q psy8497 59 YDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 59 RNVILAAPTGSGKTLV 74 (2355)
+-+||.+|.|+|||.+
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999943
No 319
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=28.86 E-value=1.3e+02 Score=34.48 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=53.3
Q ss_pred CCCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----cc-cccCCCC
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----AA-RGIDAAN 333 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----LG-EGLDLPa 333 (2355)
...++||.++++..+..+.+.+... +..+..+.|+...... +..+..+..+|+|+|.- +. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4468999999999998888887764 5677777777664433 44555678899999942 22 2345666
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+++||+-...
T Consensus 184 ~~~vViDEah 193 (414)
T 3eiq_A 184 IKMFVLDEAD 193 (414)
T ss_dssp CCEEEECSHH
T ss_pred CcEEEEECHH
Confidence 7777754443
No 320
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=27.96 E-value=35 Score=35.25 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=16.9
Q ss_pred HHcCCcEEEEccCCchHHHHHH
Q psy8497 55 VLNGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 55 LLSGRNVILAAPTGSGKTLVAL 76 (2355)
+..+.-++|.+++|+|||.++-
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHH
Confidence 3345668999999999996644
No 321
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=27.63 E-value=33 Score=35.03 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
++++|.+++|+|||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997654
No 322
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=27.51 E-value=32 Score=35.42 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=14.4
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.-++|.+++|+|||.++-
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999996543
No 323
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=27.38 E-value=30 Score=41.36 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=13.7
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
-++|.+|||+|||.++.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 36889999999995544
No 324
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=27.29 E-value=2.9e+02 Score=30.30 Aligned_cols=112 Identities=12% Similarity=0.130 Sum_probs=72.9
Q ss_pred CeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEe----cccccccCCCCccEEEEec
Q psy8497 266 NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT----DLAARGIDAANVDLVINLE 341 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdVLVST----SALGEGLDLPaVDTVIIyD 341 (2355)
.+++++++...+.+.+.+.+.+.+..+..+.+.+.. -....+.+ ...++|+||- ..+..-+++| | ++
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~--~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP----V--V~ 75 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTR--ASKIAFGL-QDEVDAIISRGATSDYIKKSVSIP----S--IS 75 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHH--HHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC----E--EE
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHH--HHHHHHHh-cCCCeEEEECChHHHHHHHhCCCC----E--EE
Confidence 478899999998888888888777777778887643 33444455 6778899987 3455556665 2 24
Q ss_pred CCCCHhHHHHHhhccCCCCCccEEEEEEcccCHHHHHHHHHhhcccc
Q psy8497 342 IPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDH 388 (2355)
Q Consensus 342 SP~SPqSYIQRIGRAGRiGQkGkVIVLVSsdDVEeIEsLrReLKLKL 388 (2355)
.+.+..++++++-+|-+.+.+.-++.| ......+..+...+++++
T Consensus 76 I~~s~~Dil~al~~a~~~~~kIavvg~--~~~~~~~~~~~~ll~~~i 120 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGNELALIAY--KHSIVDKHEIEAMLGVKI 120 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCSEEEEEEE--SSCSSCHHHHHHHHTCEE
T ss_pred EcCCHhHHHHHHHHHHhhCCcEEEEeC--cchhhHHHHHHHHhCCce
Confidence 567899999999999886654333333 222223344444444444
No 325
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=26.96 E-value=2.3e+02 Score=30.73 Aligned_cols=105 Identities=7% Similarity=0.040 Sum_probs=61.5
Q ss_pred cHHHHHHHHHCCCCCCcHHHHHHHHHHHc--CCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHHHH
Q psy8497 29 EKPIRQGLQENGFVKESPIQMAAFPYVLN--GYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQI 106 (2355)
Q Consensus 29 LkpLLK~Lqa~GF~eLRPYQeEALn~LLS--GRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAqQ~ 106 (2355)
+..+.+.....++....+.+.+.+..++. ....||-..||.|-...++.. . .....++-|=.....+...
T Consensus 40 l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~---~-----~~~~~v~~vD~~~~~~~~a 111 (232)
T 3ntv_A 40 IEVLREFAEVNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFAS---I-----SDDIHVTTIERNETMIQYA 111 (232)
T ss_dssp GGGHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHT---T-----CTTCEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHH---h-----CCCCEEEEEECCHHHHHHH
Confidence 33466666777888888888887777654 445789999999988544321 1 1245566666666665555
Q ss_pred HHHHHHHhcccCCcEEEEEECCccccC---CCCCCcEEEEC
Q psy8497 107 TDVVRSVGAHVKNLHVDYFIGGTQVER---PKRPVQIVVGS 144 (2355)
Q Consensus 107 anwLREFgk~APgLrVVvytGGkq~rk---qirq~DILVTT 144 (2355)
.+.+...... -++.++.++..... ....+++|++.
T Consensus 112 ~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 112 KQNLATYHFE---NQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HHHHHHTTCT---TTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred HHHHHHcCCC---CcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 5555554211 13555666543211 12335555544
No 326
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=26.79 E-value=33 Score=35.84 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCchHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLV 74 (2355)
.+.-+.|.+|+|+|||.+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 455588999999999954
No 327
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=26.78 E-value=31 Score=41.09 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=13.3
Q ss_pred EEEEccCCchHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 61 VILAAPTGSGKTLVAL 76 (2355)
++|++|||+|||..+.
T Consensus 13 i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 13 IFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 6889999999995544
No 328
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=26.71 E-value=62 Score=33.68 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=43.6
Q ss_pred CCeEEEEEcccccHHH-HHHHHHh---cCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc-----cc-------c
Q psy8497 265 FNQCVIFSNYQLRPEV-ICENLAN---ANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA-----AR-------G 328 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEi-LADyLrE---rGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL-----GE-------G 328 (2355)
..++||+++++..++. +.+.+.. .++.+..++|+.....+...+. ...+|+|+|... .. +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 4689999999988776 5555544 3678888888765332222111 146789998431 11 2
Q ss_pred cCCCCccEEEEecCC
Q psy8497 329 IDAANVDLVINLEIP 343 (2355)
Q Consensus 329 LDLPaVDTVIIyDSP 343 (2355)
+.+..+++||+-...
T Consensus 158 ~~~~~~~~iIiDEah 172 (216)
T 3b6e_A 158 VQLSDFSLIIIDECH 172 (216)
T ss_dssp CCGGGCSEEEETTC-
T ss_pred cchhcccEEEEECch
Confidence 455666777754444
No 329
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=26.66 E-value=38 Score=39.76 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=22.2
Q ss_pred cCCcEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcc
Q psy8497 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAP 98 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVP 98 (2355)
.|.-+.|.+|+|+|||.. +-.++.. . .+.+++.+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTL-l~lL~gl-~-----~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML-CNSLIHF-L-----GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHH-HHHHHHH-H-----TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHH-HHHHhhh-c-----CceEEEEec
Confidence 356688999999999943 3333333 3 355655444
No 330
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=26.32 E-value=3.7e+02 Score=29.36 Aligned_cols=91 Identities=12% Similarity=0.189 Sum_probs=57.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC--Cc---EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEcccHHHHH
Q psy8497 30 KPIRQGLQENGFVKESPIQMAAFPYVLNG--YD---AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAV 104 (2355)
Q Consensus 30 kpLLK~Lqa~GF~eLRPYQeEALn~LLSG--RN---VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPTRALAq 104 (2355)
..+.......+++.+.+.+.+.+..+... .. -||-..||+|-+..++.. .+ ..+..++-|=.....+.
T Consensus 23 ~~~~~~a~~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~---~~----~~~~~v~~vD~~~~~~~ 95 (221)
T 3dr5_A 23 ARAREDAAEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILN---GL----ADNTTLTCIDPESEHQR 95 (221)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHH---HS----CTTSEEEEECSCHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHH---hC----CCCCEEEEEECCHHHHH
Confidence 33666677789999999999999888742 22 678888999987554322 22 22456666667777766
Q ss_pred HHHHHHHHHhcccCCcEEEEEECCc
Q psy8497 105 QITDVVRSVGAHVKNLHVDYFIGGT 129 (2355)
Q Consensus 105 Q~anwLREFgk~APgLrVVvytGGk 129 (2355)
...+.+...+.. .-++.++.|+.
T Consensus 96 ~a~~~~~~~g~~--~~~i~~~~gda 118 (221)
T 3dr5_A 96 QAKALFREAGYS--PSRVRFLLSRP 118 (221)
T ss_dssp HHHHHHHHTTCC--GGGEEEECSCH
T ss_pred HHHHHHHHcCCC--cCcEEEEEcCH
Confidence 555555554211 02355555543
No 331
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=26.30 E-value=48 Score=40.03 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.5
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
+++||.+|+|+|||..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999996654
No 332
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=26.21 E-value=35 Score=35.98 Aligned_cols=18 Identities=39% Similarity=0.311 Sum_probs=14.6
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.-++|.+++|+|||.++-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999996543
No 333
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=26.04 E-value=62 Score=37.64 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=20.8
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
-+.|.+|+|+|||...- .+. .+.. ..++.+++..
T Consensus 104 vi~lvG~nGsGKTTll~-~La-gll~--~~~g~V~l~g 137 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIA-KLG-RYYQ--NLGKKVMFCA 137 (304)
T ss_dssp EEEEECSTTSSHHHHHH-HHH-HHHH--TTTCCEEEEC
T ss_pred EEEEECCCCCcHHHHHH-HHH-HHHH--hcCCEEEEEe
Confidence 47789999999995432 333 3332 2355666654
No 334
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=25.93 E-value=14 Score=45.93 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=49.7
Q ss_pred CeEEEEEcccccHHHH-HHHHHhcC---CccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-c-----------cccc
Q psy8497 266 NQCVIFSNYQLRPEVI-CENLANAN---FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-A-----------ARGI 329 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiL-ADyLrErG---IKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-L-----------GEGL 329 (2355)
.++||.++++..+..+ .+.|.... +.+..++|++...++...+. +..+|||+|.- + ...+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 6899999999998888 77777654 79999999887554433332 46789999942 2 2235
Q ss_pred CCCCccEEEEecCC
Q psy8497 330 DAANVDLVINLEIP 343 (2355)
Q Consensus 330 DLPaVDTVIIyDSP 343 (2355)
.+..+++||+-...
T Consensus 133 ~~~~~~lvViDEaH 146 (699)
T 4gl2_A 133 QLSDFSLIIIDECH 146 (699)
T ss_dssp CGGGCSEEEEESGG
T ss_pred ecccCcEEEEECcc
Confidence 67778888865554
No 335
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=25.82 E-value=33 Score=40.73 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=14.0
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.++|++|||+|||.++.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996544
No 336
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=25.70 E-value=55 Score=35.50 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=16.7
Q ss_pred EEEEccCCchHHHHHHHHHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ 84 (2355)
++|+++.|+|||.. +..++..|.
T Consensus 7 i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHhhH
Confidence 67899999999954 445555554
No 337
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=25.59 E-value=1.8e+02 Score=38.16 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.4
Q ss_pred EEEEccCCchHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 61 VILAAPTGSGKTLVAL 76 (2355)
+.|.++-|.|||..+.
T Consensus 150 v~i~G~gG~GKTtLa~ 165 (1249)
T 3sfz_A 150 VTIYGMAGCGKSVLAA 165 (1249)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 6789999999996654
No 338
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=25.31 E-value=30 Score=36.06 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.2
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
+.-++|.+++|+|||.+.-
T Consensus 4 ~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568999999999995543
No 339
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=25.19 E-value=41 Score=34.64 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.5
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.++|.+++|+|||.++-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68999999999996654
No 340
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=25.06 E-value=39 Score=35.21 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=12.6
Q ss_pred EEEEccCCchHHHHH
Q psy8497 61 AIVQSKSGTGKSIVF 75 (2355)
Q Consensus 61 VILAAPTGSGKTLVA 75 (2355)
++|.+|+|+|||..+
T Consensus 5 i~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 5 YIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 678999999999543
No 341
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=24.92 E-value=45 Score=37.81 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCchHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVAL 76 (2355)
.+..++|.+++|+|||.++-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 37889999999999996544
No 342
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=24.50 E-value=54 Score=38.04 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=20.6
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
+.|.+|+|+|||...- .+...+. ..++.+++..
T Consensus 103 i~lvG~nGsGKTTll~-~Lag~l~---~~~g~V~l~g 135 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLG-KLAHRLK---NEGTKVLMAA 135 (302)
T ss_dssp EEEECCTTSCHHHHHH-HHHHHHH---HTTCCEEEEC
T ss_pred EEEEcCCCCCHHHHHH-HHHHHHH---HcCCeEEEEe
Confidence 6789999999995432 3333333 2356666664
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=24.38 E-value=40 Score=34.45 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.0
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
-++|.+++|+|||.++-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996544
No 344
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=24.37 E-value=67 Score=36.70 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=17.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNK 82 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILer 82 (2355)
++++.++.|.|||..++-.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999997766444433
No 345
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=24.10 E-value=63 Score=37.78 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=34.4
Q ss_pred HHHHHHcC-----CcEEEEccCCchHHHHHHHHHHHHHHhc--CCCCCeEEEEcccHHH-HHHHHHHHHHH
Q psy8497 51 AFPYVLNG-----YDAIVQSKSGTGKSIVFVVAALNKLIKL--PVQQPQTIILAPTREI-AVQITDVVRSV 113 (2355)
Q Consensus 51 ALn~LLSG-----RNVILAAPTGSGKTLVALIAILerL~ek--r~qggRVLILVPTRAL-AqQ~anwLREF 113 (2355)
.|..++.+ .-++|.+|+|+|||..++..+....... ...+.+++||.....+ ..++..++..+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 35555532 2378999999999965554433321100 0135678888764421 23344444444
No 346
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=24.09 E-value=42 Score=34.40 Aligned_cols=18 Identities=22% Similarity=0.267 Sum_probs=14.5
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.-++|.+++|+|||.++-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999996654
No 347
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=24.07 E-value=50 Score=38.17 Aligned_cols=33 Identities=9% Similarity=0.272 Sum_probs=21.5
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEccc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILVPT 99 (2355)
++|.++.|+|||.. + ..|... ..+.++.||.|.
T Consensus 7 ~~i~G~~GaGKTTl-l----~~l~~~-~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTL-L----RHILNE-QHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHH-H----HHHHHS-CCCCCEEEECSS
T ss_pred EEEEecCCCCHHHH-H----HHHHhh-cCCCcEEEEEec
Confidence 68899999999933 2 222221 235667777775
No 348
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=23.95 E-value=44 Score=35.45 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=14.7
Q ss_pred CCcEEEEccCCchHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVA 75 (2355)
+.-++|.+++|+|||.++
T Consensus 29 g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999553
No 349
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=23.76 E-value=4.7e+02 Score=24.69 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=50.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccCCCCCCcEEEECHHHHHHHHHhhcccCcCceEEEec
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMD 168 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rkqirq~DILVTTPErLLDLLdrr~LdLSkIdLLIVD 168 (2355)
...++|||-+.......+...+...+ ..+ +.+.+.+.+...+. ...+++||+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g-----~~v-----------------~~~~~~~~a~~~l~-----~~~~dlvi~d 58 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLG-----ATT-----------------VLAADGVDALELLG-----GFTPDLMICD 58 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTT-----CEE-----------------EEESCHHHHHHHHT-----TCCCSEEEEC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCC-----ceE-----------------EEeCCHHHHHHHHh-----cCCCCEEEEe
Confidence 45689999998888666666666542 221 22334454544442 3346799998
Q ss_pred ccchhcccChHHHHHHHHHhCCCCceEEEEEeccChhHHHH
Q psy8497 169 EADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT 209 (2355)
Q Consensus 169 EAHRLkN~GF~SrLeeILs~LppnrQILLLSATLS~EILEl 209 (2355)
-. +.+..-...+. .+....+..++|++|+.........
T Consensus 59 ~~--l~~~~g~~~~~-~l~~~~~~~~ii~~t~~~~~~~~~~ 96 (130)
T 3eod_A 59 IA--MPRMNGLKLLE-HIRNRGDQTPVLVISATENMADIAK 96 (130)
T ss_dssp CC-------CHHHHH-HHHHTTCCCCEEEEECCCCHHHHHH
T ss_pred cC--CCCCCHHHHHH-HHHhcCCCCCEEEEEcCCCHHHHHH
Confidence 42 22222123333 3334455778999999876554433
No 350
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=23.67 E-value=42 Score=34.70 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.6
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.++|.+++|+|||.++-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37899999999995543
No 351
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=23.65 E-value=39 Score=40.47 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=13.9
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
-++|++|||+|||.++.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999996544
No 352
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=23.57 E-value=42 Score=35.57 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=14.9
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
+.-++|.+++|+|||.++-
T Consensus 25 g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4458889999999996543
No 353
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=23.37 E-value=89 Score=35.67 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=48.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCcC
Q psy8497 90 QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMDS 161 (2355)
Q Consensus 90 ggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLSk 161 (2355)
..++||.|+++..+..+.+.+.+. ++.+..++|+..... ......|||+|. .....+++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccC
Confidence 568999999999999888888876 456788888743221 122378999994 2245667888
Q ss_pred ceEEEe
Q psy8497 162 VRLFIM 167 (2355)
Q Consensus 162 IdLLIV 167 (2355)
+++||.
T Consensus 335 ~~~Vi~ 340 (412)
T 3fht_A 335 VSVVIN 340 (412)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888874
No 354
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=23.24 E-value=46 Score=35.64 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.3
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
+..++|.+++|+|||.++-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3468999999999996554
No 355
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=23.20 E-value=40 Score=34.57 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=14.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..++|.+++|+|||.++-
T Consensus 9 ~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH
Confidence 458899999999996543
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=23.12 E-value=48 Score=35.54 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=15.0
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..++|.+++|+|||.++-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999996544
No 357
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=23.07 E-value=60 Score=37.47 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=14.9
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..++|.+|+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 569999999999995543
No 358
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=23.05 E-value=6.9e+02 Score=26.39 Aligned_cols=119 Identities=10% Similarity=-0.022 Sum_probs=48.4
Q ss_pred cEEEEccCCchHHHHHHHHHHHHHHh---------cCCCCCeEEEEcccHHHHHHHHHHHHHHhcccCCc-EEEEEECCc
Q psy8497 60 DAIVQSKSGTGKSIVFVVAALNKLIK---------LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL-HVDYFIGGT 129 (2355)
Q Consensus 60 NVILAAPTGSGKTLVALIAILerL~e---------kr~qggRVLILVPTRALAqQ~anwLREFgk~APgL-rVVvytGGk 129 (2355)
.+-|....|-|=|+...+++...-.. ......++|||-........+...+..++ + .|
T Consensus 22 ~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g-----~~~v------- 89 (206)
T 3mm4_A 22 STDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMG-----VSEV------- 89 (206)
T ss_dssp ---------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTT-----CSEE-------
T ss_pred ceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCee-------
Confidence 35566677777777766665322110 11234578888888777555555555542 1 11
Q ss_pred cccCCCCCCcEEEECHHHHHHHHHhh--------cccCcCceEEEecccchhcccChHHHHHHHHHh---CCCCceEEEE
Q psy8497 130 QVERPKRPVQIVVGSPGRIKQMIKLK--------YLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ---LPPMKQMLVV 198 (2355)
Q Consensus 130 q~rkqirq~DILVTTPErLLDLLdrr--------~LdLSkIdLLIVDEAHRLkN~GF~SrLeeILs~---LppnrQILLL 198 (2355)
+.+.+.+..+..+... ......+++||+|= + |....-...+..+... ..+..++|++
T Consensus 90 ----------~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~-~-lp~~~G~el~~~lr~~~~~~~~~~piI~l 157 (206)
T 3mm4_A 90 ----------EQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC-Q-MPEMDGYEATREIRKVEKSYGVRTPIIAV 157 (206)
T ss_dssp ----------EEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES-C-CSSSCHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred ----------eeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC-C-CCCCCHHHHHHHHHhhhhhcCCCCcEEEE
Confidence 2233445555555432 11223578999983 2 2322222333333332 2456789999
Q ss_pred Eecc
Q psy8497 199 SATY 202 (2355)
Q Consensus 199 SATL 202 (2355)
|+..
T Consensus 158 s~~~ 161 (206)
T 3mm4_A 158 SGHD 161 (206)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9976
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=22.88 E-value=44 Score=35.40 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.0
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.++|.+++|+|||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999996654
No 360
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=22.80 E-value=47 Score=34.24 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.6
Q ss_pred cEEEEccCCchHHHH
Q psy8497 60 DAIVQSKSGTGKSIV 74 (2355)
Q Consensus 60 NVILAAPTGSGKTLV 74 (2355)
-.+|.+|+|+|||.+
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 368899999999954
No 361
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=22.56 E-value=47 Score=33.72 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=14.2
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.++|.+++|+|||.++-
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CEEEESCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58899999999996644
No 362
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=22.50 E-value=46 Score=34.49 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCchHHHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLVAL 76 (2355)
...-++|.+++|+|||.++-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34568999999999996543
No 363
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=22.41 E-value=35 Score=38.58 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=14.9
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
++-++|.+|||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 3458999999999995544
No 364
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=22.36 E-value=79 Score=38.09 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=44.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC----CCCCCcEEEECHHHHHHHHHhhcccCcCceEE
Q psy8497 90 QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER----PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLF 165 (2355)
Q Consensus 90 ggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk----qirq~DILVTTPErLLDLLdrr~LdLSkIdLL 165 (2355)
+.++||+||++.-+..+.+.+++. ++.+..++|...... .....+|||+|. .....+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFEREYPTIKQKKPDFILATD------IAEMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC--------CCCSEEEESS------STTCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhHHHHHhhhcCCCceEEEECC------hhheeeccC-ceEE
Confidence 568999999999999988888875 567888888432111 112378999994 223445666 7776
Q ss_pred E
Q psy8497 166 I 166 (2355)
Q Consensus 166 I 166 (2355)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 365
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=22.30 E-value=47 Score=34.31 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.3
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.++|.+++|+|||.++-
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp SEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999996654
No 366
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=22.28 E-value=69 Score=34.13 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=12.7
Q ss_pred EEEEccCCchHHHHH
Q psy8497 61 AIVQSKSGTGKSIVF 75 (2355)
Q Consensus 61 VILAAPTGSGKTLVA 75 (2355)
+.|.++.|+|||..+
T Consensus 25 i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999544
No 367
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=22.25 E-value=37 Score=42.35 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=21.4
Q ss_pred HHHHHH---cCCcEEEEccCCchHHHHHHHHH
Q psy8497 51 AFPYVL---NGYDAIVQSKSGTGKSIVFVVAA 79 (2355)
Q Consensus 51 ALn~LL---SGRNVILAAPTGSGKTLVALIAI 79 (2355)
++..|. +++.++|.++.|+|||..+...+
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~ 172 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELI 172 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHH
Confidence 555543 67889999999999996655433
No 368
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.24 E-value=45 Score=36.39 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=14.1
Q ss_pred CcEEEEccCCchHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVA 75 (2355)
+.++|.+|+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34899999999999553
No 369
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=22.16 E-value=53 Score=35.78 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCchHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLV 74 (2355)
.+.-+.|.+|+|+|||..
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466789999999999943
No 370
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=22.15 E-value=1.2e+02 Score=33.52 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=51.0
Q ss_pred CCeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccccCCCCc
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA------ARGIDAANV 334 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSAL------GEGLDLPaV 334 (2355)
..++||.++++..+..+++.|... ++.+..++|+....+....+ . ..+|+|+|.-. ...+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 368999999999998888888753 57888999998876544332 2 37899999421 123456667
Q ss_pred cEEEEecC
Q psy8497 335 DLVINLEI 342 (2355)
Q Consensus 335 DTVIIyDS 342 (2355)
++||+-..
T Consensus 131 ~~iViDEa 138 (337)
T 2z0m_A 131 EIVIIDEA 138 (337)
T ss_dssp SEEEEESH
T ss_pred cEEEEECh
Confidence 77775443
No 371
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=22.08 E-value=53 Score=34.53 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=12.7
Q ss_pred cEEEEccCCchHHHH
Q psy8497 60 DAIVQSKSGTGKSIV 74 (2355)
Q Consensus 60 NVILAAPTGSGKTLV 74 (2355)
-++|.+|.|+|||.+
T Consensus 3 ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 3 PIVISGPSGTGKSTL 17 (186)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999954
No 372
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=21.85 E-value=48 Score=35.25 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.0
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.++|.+++|+|||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996644
No 373
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.83 E-value=1.6e+02 Score=30.77 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=44.1
Q ss_pred EEEEEcccccHHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhCCCccE
Q psy8497 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRI 318 (2355)
Q Consensus 268 VLVFSQTRKmAEiLADyLrErGIKVarLHGgMSqEERqeILErFRSGEIdV 318 (2355)
.+||+.....+..+...++..|+.+..|++......|...++.|...-++|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 467888888888888889999999999999999999999999998765443
No 374
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=21.70 E-value=48 Score=34.95 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=12.7
Q ss_pred EEEEccCCchHHHHH
Q psy8497 61 AIVQSKSGTGKSIVF 75 (2355)
Q Consensus 61 VILAAPTGSGKTLVA 75 (2355)
+.|.+++|+|||.++
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999553
No 375
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=21.37 E-value=60 Score=38.23 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=22.0
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCC---CCeEEEEcc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQ---QPQTIILAP 98 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~q---ggRVLILVP 98 (2355)
+.|.+|.|+|||..... ++..+...... ++.+|+|.-
T Consensus 134 ~~I~G~~GsGKTTL~~~-l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHT-LAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp EEEEESTTSSHHHHHHH-HHHHTTSCGGGTSCSCEEEEEES
T ss_pred EEEECCCCCCHHHHHHH-HHHHhccchhcCCCCCeEEEEeC
Confidence 78999999999955443 33232211111 357777764
No 376
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=21.31 E-value=83 Score=36.87 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=21.1
Q ss_pred EEEEccCCchHHHHHHHHHHHHHHhcCCCCCeEEEEc
Q psy8497 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97 (2355)
Q Consensus 61 VILAAPTGSGKTLVALIAILerL~ekr~qggRVLILV 97 (2355)
++|.++.|+|||.+.... ...+.. .+++++++.
T Consensus 108 I~ivG~~G~GKTT~~~~L-A~~l~~---~g~kVllid 140 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKM-ANYYAE---LGYKVLIAA 140 (320)
T ss_dssp EEEESSTTSSHHHHHHHH-HHHHHH---TTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHH-HHHHHH---CCCeEEEEe
Confidence 677899999999654433 333332 356677664
No 377
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=21.22 E-value=49 Score=35.71 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.2
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
...++|.+++|+|||.++-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3568999999999996543
No 378
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=21.21 E-value=50 Score=34.31 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=13.7
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.+.|.+++|+|||.++-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999996543
No 379
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=21.19 E-value=50 Score=35.09 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=14.3
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
..+.|.+++|+|||.++-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999996543
No 380
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=21.17 E-value=53 Score=36.37 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCchHHHH
Q psy8497 57 NGYDAIVQSKSGTGKSIV 74 (2355)
Q Consensus 57 SGRNVILAAPTGSGKTLV 74 (2355)
.++-++|.+|+|+|||.+
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 455689999999999954
No 381
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=21.12 E-value=1.9e+02 Score=39.34 Aligned_cols=55 Identities=7% Similarity=-0.002 Sum_probs=43.7
Q ss_pred CCCeEEEEEcccccHHHHHHHHH----hcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLA----NANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLr----ErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA 324 (2355)
.+.+|+|.++|...|...++.+. ..|+.+..+.|+++..+|..+. .++|+++|..
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 34589999999998877666554 4689999999999987777654 3799999964
No 382
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=21.12 E-value=45 Score=41.02 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.3
Q ss_pred EEEEccCCchHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 61 VILAAPTGSGKTLVAL 76 (2355)
++|.+|||+|||.++.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6889999999995544
No 383
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=21.09 E-value=48 Score=36.08 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.6
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
...++|.+++|+|||.++-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999996654
No 384
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=20.94 E-value=53 Score=37.09 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.6
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
..+++|.||+|+|||.++-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4569999999999996544
No 385
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=20.93 E-value=51 Score=34.69 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.1
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.++|.+++|+|||.++-
T Consensus 22 ~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999996644
No 386
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=20.89 E-value=64 Score=34.85 Aligned_cols=75 Identities=24% Similarity=0.212 Sum_probs=48.8
Q ss_pred CeEEEEEcccccHHHHHHHHHhc----CCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc-----cc---cccCCCC
Q psy8497 266 NQCVIFSNYQLRPEVICENLANA----NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL-----AA---RGIDAAN 333 (2355)
Q Consensus 266 gRVLVFSQTRKmAEiLADyLrEr----GIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA-----LG---EGLDLPa 333 (2355)
.++||.++++..+..+++.+... ++.+..++|+..... ..........+|||+|.- +. ..+++..
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 48999999999999988888765 566666665422111 111222456789999932 11 2477888
Q ss_pred ccEEEEecCC
Q psy8497 334 VDLVINLEIP 343 (2355)
Q Consensus 334 VDTVIIyDSP 343 (2355)
+.+||+-..+
T Consensus 176 ~~~lViDEah 185 (245)
T 3dkp_A 176 VEWLVVDESD 185 (245)
T ss_dssp CCEEEESSHH
T ss_pred CcEEEEeChH
Confidence 8888865443
No 387
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=20.89 E-value=1.9e+02 Score=38.67 Aligned_cols=55 Identities=9% Similarity=-0.085 Sum_probs=42.8
Q ss_pred CCCeEEEEEcccccHHHHHHHHH----hcCCccEEeeCCCCHHHHHHHHHHHhCCCccEEEEecc
Q psy8497 264 PFNQCVIFSNYQLRPEVICENLA----NANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324 (2355)
Q Consensus 264 ~kgRVLVFSQTRKmAEiLADyLr----ErGIKVarLHGgMSqEERqeILErFRSGEIdVLVSTSA 324 (2355)
...+++|.++|+..|...++.+. ..|+.+..+.|+++..+|.... .++|+|+|+.
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 34589999999999877666654 4589999999999987665543 3789999963
No 388
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.82 E-value=2e+02 Score=27.69 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCccEEeeCCCCHHHHHHHHHHHhC----CCccEEEEeccccccc---CCCCccEEEEecCCCCHhHHH
Q psy8497 278 PEVICENLANANFGAEYLSGAQDQKARLASLDSFKR----GKVRILVTTDLAARGI---DAANVDLVINLEIPHDAATYL 350 (2355)
Q Consensus 278 AEiLADyLrErGIKVarLHGgMSqEERqeILErFRS----GEIdVLVSTSALGEGL---DLPaVDTVIIyDSP~SPqSYI 350 (2355)
.....+.|....+.+.+++-.|+...-..+++.++. ..+.||+.|....... ..-.+...-++.-|.++..+.
T Consensus 39 ~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~ 118 (140)
T 3grc_A 39 AAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLI 118 (140)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHH
Confidence 334444555666777777766665555555666654 3455666664321110 111112222344567777777
Q ss_pred HHhhccCC
Q psy8497 351 HRMGRAGR 358 (2355)
Q Consensus 351 QRIGRAGR 358 (2355)
+++-++.+
T Consensus 119 ~~i~~~l~ 126 (140)
T 3grc_A 119 LSLHRAID 126 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766544
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=20.74 E-value=75 Score=35.43 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=14.5
Q ss_pred CcEEEEccCCchHHHHHH
Q psy8497 59 YDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 59 RNVILAAPTGSGKTLVAL 76 (2355)
.-++|+|++|+|||.++-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 347899999999996544
No 390
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=20.65 E-value=56 Score=39.81 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=18.7
Q ss_pred CCcEEEEccCCchHHHHHHHHHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFVVAALNKLI 84 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVALIAILerL~ 84 (2355)
..++||.+|+|+|||.++- .+...+.
T Consensus 201 ~~~~LL~G~pG~GKT~la~-~la~~l~ 226 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE-GLAQQII 226 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH-HHHHHHH
Confidence 3579999999999996654 4444443
No 391
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=20.64 E-value=89 Score=39.93 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=52.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCc
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMD 160 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLS 160 (2355)
.+.++||.|+++..+..+.+.+.+. ++.+..++|+..... ....++|+|+|- +....+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccC
Confidence 4679999999999988888888876 566777777642110 112377999983 224566788
Q ss_pred CceEEEecccchh
Q psy8497 161 SVRLFIMDEADKL 173 (2355)
Q Consensus 161 kIdLLIVDEAHRL 173 (2355)
.+++||+=+++..
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 8899998887653
No 392
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=20.53 E-value=54 Score=33.64 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=13.3
Q ss_pred EEEEccCCchHHHHHH
Q psy8497 61 AIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 61 VILAAPTGSGKTLVAL 76 (2355)
++|.+++|+|||.++-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999996544
No 393
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=20.26 E-value=92 Score=30.49 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=32.0
Q ss_pred CCeEEEEEcccccHHHHHHHHHhcCCccEEeeCCCC
Q psy8497 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQD 300 (2355)
Q Consensus 265 kgRVLVFSQTRKmAEiLADyLrErGIKVarLHGgMS 300 (2355)
...++|||.+-..+..++..|...|+.+..|.|++.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 358999999988899999999999999999999864
No 394
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=20.26 E-value=84 Score=35.44 Aligned_cols=72 Identities=13% Similarity=0.222 Sum_probs=51.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHHhcccCCcEEEEEECCccccC--------CCCCCcEEEECHHHHHHHHHhhcccCc
Q psy8497 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--------PKRPVQIVVGSPGRIKQMIKLKYLNMD 160 (2355)
Q Consensus 89 qggRVLILVPTRALAqQ~anwLREFgk~APgLrVVvytGGkq~rk--------qirq~DILVTTPErLLDLLdrr~LdLS 160 (2355)
...++||.|+++.-+..+.+.+++. ++.+..++|+..... ......|||+|. .....+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcc
Confidence 4578999999999998888888775 456788888753221 112367999994 224566788
Q ss_pred CceEEEecccc
Q psy8497 161 SVRLFIMDEAD 171 (2355)
Q Consensus 161 kIdLLIVDEAH 171 (2355)
.+++||.-..-
T Consensus 311 ~~~~Vi~~~~p 321 (395)
T 3pey_A 311 TVSMVVNYDLP 321 (395)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEcCCC
Confidence 88888865443
No 395
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=20.24 E-value=55 Score=34.07 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=14.9
Q ss_pred CCcEEEEccCCchHHHHHH
Q psy8497 58 GYDAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 58 GRNVILAAPTGSGKTLVAL 76 (2355)
+.-++|.+++|+|||.++-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 3457899999999996544
No 396
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=20.08 E-value=56 Score=33.06 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=13.9
Q ss_pred cEEEEccCCchHHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVFV 76 (2355)
Q Consensus 60 NVILAAPTGSGKTLVAL 76 (2355)
.++|.+++|+|||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999996543
No 397
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=20.03 E-value=55 Score=34.32 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.4
Q ss_pred cEEEEccCCchHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 60 NVILAAPTGSGKTLVA 75 (2355)
-++|.+++|+|||.++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999654
No 398
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=20.01 E-value=55 Score=34.41 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=13.2
Q ss_pred cEEEEccCCchHHHHH
Q psy8497 60 DAIVQSKSGTGKSIVF 75 (2355)
Q Consensus 60 NVILAAPTGSGKTLVA 75 (2355)
.++|.+++|+|||.++
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999543
Done!