Your job contains 1 sequence.
>psy8497
MAHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD
AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL
HVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVE
DITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIP
ECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQD
QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG
TRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQ
AQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDG
KPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANSAEKSLEDKHGK
KITNSFEAVGEIVQNDTETTKENNQTDEVPEENGLVGNPNKAEVGDLNECESCTDSFHMN
EHSDENDLGNNTKESQKQKGHKSKKKKDRKRKGNGDKRDPQGNNANQREIRDNSATLDKT
EKESVNNVESKDERPPSTANNPDGTEWEDIPSDTIPNDETSNDNKLTPVDFDYINDFVNQ
TPSETGDRPLVHGPNSVPKIDTPSDDYLVANMKACLTNDSVRVQVLMEKLDHVDASVLAD
WILNKHNNVAALFRSEDQSNSVRIGDNDGTGNRSITRSKQNSQSGDHTDLKDSNRPNANT
DPSTGKNVKDIQSREIKSYASLSMFSPCQTTLNKFDTQYNSSDYQSDSKPYGDRTKRRSR
PRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDERNGAYTGDKGGR
NRGHSVNSRKDHSFAGETPRSKGGFDSYLDQSMDSFLDKSCREESFLKRSHMPKRDLVVY
DDAFDMFSPAANNLDEYEIDYVEQPVDEKKSRRELSQKMDSDRYRPDSDGDPNRRPSSQE
SLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKSSDAKQAANEEEN
ITGGNDENKTPVASEVRNKNKKVKGVKEKNPSIVGDEKRRYWWRSPPGGGPNAARHKVCD
DTDFQISWNDPHPPKLTHGTGKSRSKSSHSKQSKRSAENPSCRRMRGQDAFAPGGVATPS
FGMNRAYEENFSKLDLSSYHDEHAVFLPNSSSEDDCDGLSHGDEANGLASEDADEYSGSS
LNSSCIDLNCDHLENDFSEEEAEEYLEETYVTDEYHECDDERCSHDDCGDLDYQQYEKLR
GRQANTPTKTIGDTQGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVST
NVNVSDDDGLDESYNMIKTPTPRKRNGASGESSVEREDVGGGKSLRNLLLRRALMNKQNE
VNLWHRENQGWNQKAQGWNEHTEVQTGLNQGWHQKTQGWNEHSELQNGIDYGRLPIGHQH
NHDHRHKHRFNHSSSGGNPNARISNRQRSVVPLDHPFVSNFSNSFNFDTSFSNGMSQRFS
NGSQPARCFVETHKGKTRLNDVSRCEHQGEFLPSLRKRCDVGHHQVYASSPCLSKHGRIG
SNKRTGFQLTSLQVDRHTQMDQYFRNGGPMMKQYLCSTQGLQRFKHHHSSSHSQSEFDPK
RLHSKESSHKRNRKANDFNDTCGAVANETFDGEDSKGGSDDENNLIVTLSEAGDSEVDVE
GENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNSRCQPKTAY
QSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWRTCSSESAAREKNSGQRSRGSGDKAA
RKSASLPASQIALRDGKGDFKSPRKASHSLKDGKRYGNAQSFEAARNSNPYEAPMPGAWQ
PVLEGTSVFDDAEKSSKSGPKSSKAGPKSSKPGPKSSKPGPKSSKRYPSRSGSSGLNNRT
EGNSVSHTWENHFATGTDRRSHQYPAYGSMSRHDLYFDESQLLGNEALGRGEIRGSGGGF
ASRVSSVGPANESGLVVAGWNRCDREGHDPARGLPMRSHFHGVKRSNHCDRKPRGGRKRL
ESSGNETFDIVEDLDGLSLNEGCQRVNGFGRGRKGGNGNGRGNSERLAPTCSHYRENTNS
FRYLDNRVCGHKDAKSRYQGNQIRGHIKDAKPCFHGNLNETDLTYDRLSSDYDSTFSCGD
FFLDSSYEDGPAHESEGCSYEHVLRAHPAYYPSLDVPRLKAVLERQREFMESYASQMSVY
LNVARNIAGNSYFDF
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8497
(2355 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1PXG6 - symbol:DDX20 "Uncharacterized protein"... 778 9.5e-84 3
UNIPROTKB|J9P828 - symbol:DDX20 "Uncharacterized protein"... 778 9.5e-84 3
UNIPROTKB|F1MRW7 - symbol:DDX20 "Uncharacterized protein"... 786 1.2e-81 3
MGI|MGI:1858415 - symbol:Ddx20 "DEAD (Asp-Glu-Ala-Asp) bo... 779 2.9e-81 2
UNIPROTKB|F1SBP3 - symbol:DDX20 "Uncharacterized protein"... 780 1.3e-80 3
UNIPROTKB|F1MAM8 - symbol:Ddx20 "Protein Ddx20" species:1... 762 6.1e-80 3
UNIPROTKB|Q9UHI6 - symbol:DDX20 "Probable ATP-dependent R... 776 7.8e-79 2
UNIPROTKB|E9PSX0 - symbol:Ddx20 "Protein Ddx20" species:1... 751 9.0e-79 3
ZFIN|ZDB-GENE-030131-202 - symbol:ddx20 "DEAD (Asp-Glu-Al... 775 1.4e-77 2
UNIPROTKB|F1NRN3 - symbol:DDX20 "Uncharacterized protein"... 754 7.7e-76 3
UNIPROTKB|F1P5C0 - symbol:DDX20 "Uncharacterized protein"... 736 6.3e-74 3
UNIPROTKB|J9P7U2 - symbol:DDX20 "Uncharacterized protein"... 549 2.0e-59 3
FB|FBgn0011802 - symbol:Gem3 "Gemin3" species:7227 "Droso... 600 6.5e-56 2
DICTYBASE|DDB_G0277527 - symbol:ddx20 "component of gems ... 436 1.1e-54 3
WB|WBGene00020284 - symbol:mel-46 species:6239 "Caenorhab... 589 5.4e-54 3
UNIPROTKB|Q9KLE2 - symbol:VC_A0804 "ATP-dependent RNA hel... 547 5.7e-54 2
TIGR_CMR|VC_A0804 - symbol:VC_A0804 "ATP-dependent RNA he... 547 5.7e-54 2
GENEDB_PFALCIPARUM|PF14_0655 - symbol:PF14_0655 "RNA heli... 556 1.0e-52 2
UNIPROTKB|Q8IKF0 - symbol:H45 "Helicase 45" species:36329... 556 1.0e-52 2
UNIPROTKB|A4QVP2 - symbol:TIF1 "ATP-dependent RNA helicas... 559 1.8e-52 1
SGD|S000001767 - symbol:TIF1 "Translation initiation fact... 558 2.3e-52 1
SGD|S000003674 - symbol:TIF2 "Translation initiation fact... 558 2.3e-52 1
ZFIN|ZDB-GENE-040426-915 - symbol:eif4a3 "eukaryotic tran... 558 2.3e-52 1
ASPGD|ASPL0000014018 - symbol:fal1 species:162425 "Emeric... 556 3.8e-52 1
UNIPROTKB|Q5ZM36 - symbol:EIF4A3 "Eukaryotic initiation f... 556 3.8e-52 1
UNIPROTKB|Q2NL22 - symbol:EIF4A3 "Eukaryotic initiation f... 556 3.8e-52 1
UNIPROTKB|E2RDZ4 - symbol:EIF4A3 "Uncharacterized protein... 556 3.8e-52 1
UNIPROTKB|P38919 - symbol:EIF4A3 "Eukaryotic initiation f... 556 3.8e-52 1
UNIPROTKB|A6M931 - symbol:EIF4A3 "Eukaryotic initiation f... 556 3.8e-52 1
RGD|1591139 - symbol:Eif4a3 "eukaryotic translation initi... 556 3.8e-52 1
CGD|CAL0001638 - symbol:FAL1 species:5476 "Candida albica... 547 3.4e-51 1
FB|FBgn0037573 - symbol:eIF4AIII "eIF4AIII" species:7227 ... 547 3.4e-51 1
WB|WBGene00018007 - symbol:F33D11.10 species:6239 "Caenor... 547 3.4e-51 1
UNIPROTKB|Q3SZ65 - symbol:EIF4A2 "Eukaryotic initiation f... 539 4.0e-51 2
UNIPROTKB|E2R3J1 - symbol:EIF4A2 "Uncharacterized protein... 539 4.0e-51 2
UNIPROTKB|Q14240 - symbol:EIF4A2 "Eukaryotic initiation f... 539 4.0e-51 2
UNIPROTKB|A6M930 - symbol:EIF4A2 "Eukaryotic translation ... 539 4.0e-51 2
MGI|MGI:106906 - symbol:Eif4a2 "eukaryotic translation in... 539 4.0e-51 2
RGD|1309225 - symbol:Eif4a2 "eukaryotic translation initi... 539 4.0e-51 2
UNIPROTKB|F8WFX2 - symbol:Eif4a2 "Eukaryotic initiation f... 539 4.0e-51 2
UNIPROTKB|Q3SZ54 - symbol:EIF4A1 "Eukaryotic initiation f... 534 4.0e-51 2
UNIPROTKB|F1P895 - symbol:EIF4A1 "Uncharacterized protein... 534 4.0e-51 2
UNIPROTKB|J9NY67 - symbol:EIF4A1 "Uncharacterized protein... 534 4.0e-51 2
UNIPROTKB|P60842 - symbol:EIF4A1 "Eukaryotic initiation f... 534 4.0e-51 2
UNIPROTKB|A6M928 - symbol:EIF4A1 "Uncharacterized protein... 534 4.0e-51 2
MGI|MGI:95303 - symbol:Eif4a1 "eukaryotic translation ini... 534 4.0e-51 2
UNIPROTKB|Q6P3V8 - symbol:Eif4a1 "Protein Eif4a1" species... 534 4.0e-51 2
FB|FBgn0001942 - symbol:eIF-4a "Eukaryotic initiation fac... 546 4.3e-51 1
WB|WBGene00022029 - symbol:Y65B4A.6 species:6239 "Caenorh... 546 4.3e-51 1
POMBASE|SPAC1F5.10 - symbol:SPAC1F5.10 "ATP-dependent RNA... 545 5.6e-51 1
UNIPROTKB|Q8JFP1 - symbol:EIF4A2 "Eukaryotic initiation f... 537 6.5e-51 2
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 514 6.8e-51 2
TAIR|locus:2091191 - symbol:EIF4A-III "eukaryotic initiat... 544 7.1e-51 1
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer... 542 1.2e-50 1
POMBASE|SPAC1006.07 - symbol:SPAC1006.07 "translation ini... 542 1.2e-50 1
ZFIN|ZDB-GENE-040426-2802 - symbol:eif4a2 "eukaryotic tra... 531 2.8e-50 2
CGD|CAL0006152 - symbol:DHH1 species:5476 "Candida albica... 538 3.1e-50 1
UNIPROTKB|Q5AAW3 - symbol:DHH1 "ATP-dependent RNA helicas... 538 3.1e-50 1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 507 4.8e-50 2
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 508 9.9e-50 2
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 508 9.9e-50 2
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 508 9.9e-50 2
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 508 9.9e-50 2
SGD|S000002319 - symbol:DHH1 "Cytoplasmic DExD/H-box heli... 533 1.0e-49 1
UNIPROTKB|I3LLD5 - symbol:I3LLD5 "Uncharacterized protein... 519 1.6e-49 2
CGD|CAL0004095 - symbol:TIF species:5476 "Candida albican... 531 1.7e-49 1
UNIPROTKB|P87206 - symbol:TIF1 "ATP-dependent RNA helicas... 531 1.7e-49 1
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 505 2.1e-49 2
UNIPROTKB|A4R715 - symbol:DHH1 "ATP-dependent RNA helicas... 529 2.8e-49 1
DICTYBASE|DDB_G0269192 - symbol:tifA "eukaryotic translat... 528 3.6e-49 1
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 499 8.3e-49 3
ZFIN|ZDB-GENE-040120-6 - symbol:eif4a1b "eukaryotic trans... 518 1.1e-48 2
ZFIN|ZDB-GENE-031030-2 - symbol:eif4a1a "eukaryotic trans... 516 2.3e-48 2
ZFIN|ZDB-GENE-030131-6611 - symbol:wu:fk48d07 "wu:fk48d07... 508 4.8e-48 2
UNIPROTKB|F1RZ83 - symbol:EIF4A3 "Eukaryotic initiation f... 517 5.3e-48 1
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 489 5.8e-48 3
UNIPROTKB|J9NU36 - symbol:EIF4A1 "Uncharacterized protein... 504 6.1e-48 2
UNIPROTKB|F1NTS2 - symbol:EIF4A3 "Eukaryotic initiation f... 514 1.1e-47 1
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 484 1.3e-47 2
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 484 1.3e-47 2
TAIR|locus:2147987 - symbol:UAP56a "homolog of human UAP5... 512 1.8e-47 1
DICTYBASE|DDB_G0269146 - symbol:ifdA "eukaryotic translat... 511 2.3e-47 1
TIGR_CMR|CPS_1726 - symbol:CPS_1726 "RNA helicase DeaD" s... 510 2.9e-47 1
UNIPROTKB|E1BDM8 - symbol:DDX6 "Uncharacterized protein" ... 488 4.4e-47 2
GENEDB_PFALCIPARUM|PFD1070w - symbol:PFD1070w "eukaryotic... 508 4.8e-47 1
UNIPROTKB|Q8IFN9 - symbol:PFD1070w "Eukaryotic initiation... 508 4.8e-47 1
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 503 5.4e-47 2
UNIPROTKB|E2RR01 - symbol:DDX6 "Uncharacterized protein" ... 488 5.6e-47 2
UNIPROTKB|P26196 - symbol:DDX6 "Probable ATP-dependent RN... 488 5.6e-47 2
UNIPROTKB|F1SAJ5 - symbol:DDX6 "Uncharacterized protein" ... 488 5.6e-47 2
TAIR|locus:2088237 - symbol:EIF4A1 "eukaryotic translatio... 507 6.1e-47 1
POMBASE|SPBC776.09 - symbol:ste13 "ATP-dependent RNA heli... 497 7.0e-47 2
SGD|S000002428 - symbol:FAL1 "Nucleolar protein required ... 506 7.8e-47 1
TAIR|locus:2020078 - symbol:EIF4A-2 "eif4a-2" species:370... 506 7.8e-47 1
TAIR|locus:2008296 - symbol:AT1G51380 species:3702 "Arabi... 498 8.8e-47 2
UNIPROTKB|Q5WR10 - symbol:DDX39B "Spliceosome RNA helicas... 505 1.0e-46 1
UNIPROTKB|Q13838 - symbol:DDX39B "Spliceosome RNA helicas... 505 1.0e-46 1
UNIPROTKB|Q29024 - symbol:DDX39B "Spliceosome RNA helicas... 505 1.0e-46 1
MGI|MGI:99240 - symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box... 505 1.0e-46 1
RGD|70923 - symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box pol... 505 1.0e-46 1
WARNING: Descriptions of 1028 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1PXG6 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 EMBL:AAEX03011088 EMBL:AAEX03011089
Ensembl:ENSCAFT00000021679 Uniprot:F1PXG6
Length = 825
Score = 778 (278.9 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 174/373 (46%), Positives = 233/373 (62%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHD+ ART DVL FE+ +L+ +P+ GL+ GF + SP+Q+ A P G D
Sbjct: 45 AHDVSGPRARTGDVLLAEPADFES-LLLSRPVLDGLRAAGFERPSPVQLKAIPLGRCGLD 103
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ L+ L Q Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 104 LIVQAKSGTGKTCVFSTIALDSLV-LENQSTQILILAPTREIAVQIHSVITAIGIKMEGL 162
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 163 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 222
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L KYM DP +R + L+G+KQ
Sbjct: 223 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYY 282
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L+ F AE
Sbjct: 283 KIVNSY--PLAHKIFEEKAQHLQELFSRIPFNQALVFSNLHSRAQHLADILSAKGFPAEC 340
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG +Q RL ++ K R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 341 ISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 400
Query: 355 RAGRYGTRGLVIT 367
RAGR+GT GL +T
Sbjct: 401 RAGRFGTLGLTVT 413
Score = 98 (39.6 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 29/123 (23%), Positives = 46/123 (37%)
Query: 1785 LIVTLSEAGDSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKS 1844
++ + S++GDSE D + +S T N S +G S Q S+ DG + +
Sbjct: 643 MLASSSQSGDSESDSDSYSSRTSSQSKGNKSYFEGSSDTQLKDSESTPMDGHTSLEQPLN 702
Query: 1845 NESHFGNSRCQPKTAYQSSSAQSEDGTSYKSIS------WDAYSVIDEPESYDVSWRTCS 1898
+ CQ Q+ + E S W +Y EP+ D W C
Sbjct: 703 GNDTPNPAECQESPETQTKARHKEGANQRAKQSRRNPPPWSSYRAQAEPQE-D-GWYDCC 760
Query: 1899 SES 1901
E+
Sbjct: 761 GET 763
Score = 60 (26.2 bits), Expect = 1.3e-78, Sum P(2) = 1.3e-78
Identities = 30/114 (26%), Positives = 44/114 (38%)
Query: 881 SSDYQSDSKPYGDRTKRRSRPRKNK-ENTDILNTLGQDKTSAHGRT----PSGGHRTP-- 933
S D +SDS Y RT +S+ K+ E + + T G T P G+ TP
Sbjct: 650 SGDSESDSDSYSSRTSSQSKGNKSYFEGSSDTQLKDSESTPMDGHTSLEQPLNGNDTPNP 709
Query: 934 -ERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSFAGETPRSKGGFD 986
E + S + R + GA K R +S + A P+ G +D
Sbjct: 710 AECQESPETQTKAR-HKEGANQRAKQSRRNPPPWSSYR----AQAEPQEDGWYD 758
Score = 58 (25.5 bits), Expect = 1.5e-79, Sum P(3) = 1.5e-79
Identities = 22/105 (20%), Positives = 40/105 (38%)
Query: 1793 GDSEVDV-EGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGN 1851
G S+ + + E++P D N G T ++ E+ H +N+ +
Sbjct: 677 GSSDTQLKDSESTPMDGHTSLEQPLN-GNDTPNPAECQESPETQTKARHKEGANQRAKQS 735
Query: 1852 SRCQPK-TAYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWR 1895
R P ++Y++ + EDG Y D + Y+ WR
Sbjct: 736 RRNPPPWSSYRAQAEPQEDGW-YDCCGETHPGFSDAYQDYEEYWR 779
Score = 43 (20.2 bits), Expect = 7.8e-77, Sum P(2) = 7.8e-77
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 470 SEEESDSENDGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANS 529
S + DSE+D ++ S R S +SK K+ +G+ + + D +++ +DG S
Sbjct: 647 SSQSGDSESDS---DSYSSRTSSQSKGNKSY---FEGSSDTQLKDSESTP----MDGHTS 696
Query: 530 AEKSL 534
E+ L
Sbjct: 697 LEQPL 701
Score = 38 (18.4 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 1092 LRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKS-SDAKQ 1133
L+K+++ R + K + +++ R+ S SA KS ++ KQ
Sbjct: 474 LKKQIQKMERNFQTQKAHGNHVASSRNTSVSALLVKSKNNTKQ 516
Score = 37 (18.1 bits), Expect = 1.9e-79, Sum P(3) = 1.9e-79
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 965 SVNSRKDH-SFAGETPRSKGGFDSYLDQSMDSFLDKS 1000
S +S D S++ T G SY + S D+ L S
Sbjct: 650 SGDSESDSDSYSSRTSSQSKGNKSYFEGSSDTQLKDS 686
>UNIPROTKB|J9P828 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:VEDYEHY
GeneTree:ENSGT00530000062880 EMBL:AAEX03011088 EMBL:AAEX03011089
Ensembl:ENSCAFT00000050085 Uniprot:J9P828
Length = 825
Score = 778 (278.9 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 174/373 (46%), Positives = 233/373 (62%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHD+ ART DVL FE+ +L+ +P+ GL+ GF + SP+Q+ A P G D
Sbjct: 45 AHDVSGPRARTGDVLLAEPADFES-LLLSRPVLDGLRAAGFERPSPVQLKAIPLGRCGLD 103
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ L+ L Q Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 104 LIVQAKSGTGKTCVFSTIALDSLV-LENQSTQILILAPTREIAVQIHSVITAIGIKMEGL 162
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 163 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 222
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L KYM DP +R + L+G+KQ
Sbjct: 223 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYY 282
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L+ F AE
Sbjct: 283 KIVNSY--PLAHKIFEEKAQHLQELFSRIPFNQALVFSNLHSRAQHLADILSAKGFPAEC 340
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG +Q RL ++ K R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 341 ISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 400
Query: 355 RAGRYGTRGLVIT 367
RAGR+GT GL +T
Sbjct: 401 RAGRFGTLGLTVT 413
Score = 98 (39.6 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 29/123 (23%), Positives = 46/123 (37%)
Query: 1785 LIVTLSEAGDSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKS 1844
++ + S++GDSE D + +S T N S +G S Q S+ DG + +
Sbjct: 643 MLASSSQSGDSESDSDSYSSRTSSQSKGNKSYFEGSSDTQLKDSESTPMDGHTSLEQPLN 702
Query: 1845 NESHFGNSRCQPKTAYQSSSAQSEDGTSYKSIS------WDAYSVIDEPESYDVSWRTCS 1898
+ CQ Q+ + E S W +Y EP+ D W C
Sbjct: 703 GNDTPNPAECQESPETQTKARHKEGANQRAKQSRRNPPPWSSYRAQAEPQE-D-GWYDCC 760
Query: 1899 SES 1901
E+
Sbjct: 761 GET 763
Score = 60 (26.2 bits), Expect = 1.3e-78, Sum P(2) = 1.3e-78
Identities = 30/114 (26%), Positives = 44/114 (38%)
Query: 881 SSDYQSDSKPYGDRTKRRSRPRKNK-ENTDILNTLGQDKTSAHGRT----PSGGHRTP-- 933
S D +SDS Y RT +S+ K+ E + + T G T P G+ TP
Sbjct: 650 SGDSESDSDSYSSRTSSQSKGNKSYFEGSSDTQLKDSESTPMDGHTSLEQPLNGNDTPNP 709
Query: 934 -ERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSFAGETPRSKGGFD 986
E + S + R + GA K R +S + A P+ G +D
Sbjct: 710 AECQESPETQTKAR-HKEGANQRAKQSRRNPPPWSSYR----AQAEPQEDGWYD 758
Score = 58 (25.5 bits), Expect = 1.5e-79, Sum P(3) = 1.5e-79
Identities = 22/105 (20%), Positives = 40/105 (38%)
Query: 1793 GDSEVDV-EGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGN 1851
G S+ + + E++P D N G T ++ E+ H +N+ +
Sbjct: 677 GSSDTQLKDSESTPMDGHTSLEQPLN-GNDTPNPAECQESPETQTKARHKEGANQRAKQS 735
Query: 1852 SRCQPK-TAYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWR 1895
R P ++Y++ + EDG Y D + Y+ WR
Sbjct: 736 RRNPPPWSSYRAQAEPQEDGW-YDCCGETHPGFSDAYQDYEEYWR 779
Score = 43 (20.2 bits), Expect = 7.8e-77, Sum P(2) = 7.8e-77
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 470 SEEESDSENDGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANS 529
S + DSE+D ++ S R S +SK K+ +G+ + + D +++ +DG S
Sbjct: 647 SSQSGDSESDS---DSYSSRTSSQSKGNKSY---FEGSSDTQLKDSESTP----MDGHTS 696
Query: 530 AEKSL 534
E+ L
Sbjct: 697 LEQPL 701
Score = 38 (18.4 bits), Expect = 9.5e-84, Sum P(3) = 9.5e-84
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 1092 LRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKS-SDAKQ 1133
L+K+++ R + K + +++ R+ S SA KS ++ KQ
Sbjct: 474 LKKQIQKMERNFQTQKAHGNHVASSRNTSVSALLVKSKNNTKQ 516
Score = 37 (18.1 bits), Expect = 1.9e-79, Sum P(3) = 1.9e-79
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 965 SVNSRKDH-SFAGETPRSKGGFDSYLDQSMDSFLDKS 1000
S +S D S++ T G SY + S D+ L S
Sbjct: 650 SGDSESDSDSYSSRTSSQSKGNKSYFEGSSDTQLKDS 686
>UNIPROTKB|F1MRW7 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:VEDYEHY
GeneTree:ENSGT00530000062880 EMBL:DAAA02007520 IPI:IPI00867090
UniGene:Bt.13425 Ensembl:ENSBTAT00000024914 Uniprot:F1MRW7
Length = 825
Score = 786 (281.7 bits), Expect = 1.2e-81, Sum P(3) = 1.2e-81
Identities = 174/373 (46%), Positives = 235/373 (63%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHDI RT DVL FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D
Sbjct: 43 AHDISGPRTRTGDVLLAEPADFES-LLLSRPVLEGLRAVGFERPSPVQLKAIPLGRCGLD 101
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ L+ L Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 102 LIVQAKSGTGKTCVFSTIALDSLV-LENLSTQILILAPTREIAVQIHSVITAIGIKMEGL 160
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 161 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 220
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L KYM +P +R + L+G+KQ
Sbjct: 221 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMREPTFVRLNSSDPSLIGLKQYY 280
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L++ F AEY
Sbjct: 281 KIVNSY--PLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPAEY 338
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG DQ RL ++ K+ R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 339 ISGNMDQNRRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDCETYMHRIG 398
Query: 355 RAGRYGTRGLVIT 367
RAGR+GT GL +T
Sbjct: 399 RAGRFGTLGLTVT 411
Score = 70 (29.7 bits), Expect = 1.2e-81, Sum P(3) = 1.2e-81
Identities = 28/125 (22%), Positives = 55/125 (44%)
Query: 1785 LIVTLSEAGDSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGE-SDSHSVK 1843
++ + S++GDSE D + +S T N S + S Q S+ DG S +
Sbjct: 641 ILASSSQSGDSESDSDSYSSRTSSQSKGNKSYLEVSSDTQLKDSESIPMDGHISLEQPLN 700
Query: 1844 SNES-----HFGNSRCQPKTAYQSSSAQSEDGT-SYKSISW-DAYSVIDEPESYDVSWRT 1896
N++ + ++ Q KT ++ + ++ S +++ +Y + EP+ D W
Sbjct: 701 GNDTPSLVEYQESTEIQVKTRHKEGANHNQRAKQSRRNLPRRSSYRLQTEPQE-D-GWYD 758
Query: 1897 CSSES 1901
C E+
Sbjct: 759 CQRET 763
Score = 69 (29.3 bits), Expect = 2.0e-80, Sum P(2) = 2.0e-80
Identities = 43/181 (23%), Positives = 78/181 (43%)
Query: 1823 AQNSQSDENSHDGESDSHSVKSNESHFGNS---RCQPKTAYQSSSAQSEDG--TSYKSIS 1877
A +SQS ++ D SDS+S +++ GN T + S + DG + + ++
Sbjct: 643 ASSSQSGDSESD--SDSYSSRTSSQSKGNKSYLEVSSDTQLKDSESIPMDGHISLEQPLN 700
Query: 1878 W-DAYSVIDEPESYDVSWRTCSSESAAREKNSGQRSRGSGDKAARKSASLPASQIALRDG 1936
D S+++ ES ++ +T E A N QR++ S R+S+ ++ DG
Sbjct: 701 GNDTPSLVEYQESTEIQVKTRHKEGA----NHNQRAKQSRRNLPRRSSYRLQTE-PQEDG 755
Query: 1937 KGDFKSPRKASHS--LKDGKRYGNA-----QSFEAARNSNPY-EAPMPGAWQPVLEGTSV 1988
D + S S +D + Y A Q + AA + + Y A +W + +V
Sbjct: 756 WYDCQRETHPSFSDTYQDYEEYWRAYYRAWQEYYAAASQSYYWNAQRHPSWMAAYQMNTV 815
Query: 1989 F 1989
+
Sbjct: 816 Y 816
Score = 61 (26.5 bits), Expect = 1.4e-79, Sum P(2) = 1.4e-79
Identities = 31/126 (24%), Positives = 52/126 (41%)
Query: 881 SSDYQSDSKPYGDRTKRRSRPRKNK-ENTDILNTLGQDKTSAHGRT----PSGGHRTP-- 933
S D +SDS Y RT +S+ K+ E + + G P G+ TP
Sbjct: 648 SGDSESDSDSYSSRTSSQSKGNKSYLEVSSDTQLKDSESIPMDGHISLEQPLNGNDTPSL 707
Query: 934 -ERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSFAGETPRSKGGFDSYLDQS 992
E + S ++ TR + GA + ++R ++ R + E P+ G +D + +
Sbjct: 708 VEYQESTEIQVKTR-HKEGANHNQRAKQSR-RNLPRRSSYRLQTE-PQEDGWYDCQRE-T 763
Query: 993 MDSFLD 998
SF D
Sbjct: 764 HPSFSD 769
Score = 47 (21.6 bits), Expect = 3.0e-79, Sum P(3) = 3.0e-79
Identities = 21/88 (23%), Positives = 38/88 (43%)
Query: 821 NSQSGDHTDLKDSNRPNANTDPSTGKNVKDIQS-REIKSYASLSMFS--PCQTTLNKFDT 877
+SQSGD DS ++ K+ ++ S ++K S+ M + LN DT
Sbjct: 645 SSQSGDSESDSDSYSSRTSSQSKGNKSYLEVSSDTQLKDSESIPMDGHISLEQPLNGNDT 704
Query: 878 QYNSSDYQSDSKPYGDRTKRRSRPRKNK 905
+ +YQ +S +T+ + N+
Sbjct: 705 P-SLVEYQ-ESTEIQVKTRHKEGANHNQ 730
Score = 41 (19.5 bits), Expect = 1.3e-78, Sum P(3) = 1.3e-78
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 965 SVNSRKDH-SFAGETPRSKGGFDSYLDQSMDSFLDKS 1000
S +S D S++ T G SYL+ S D+ L S
Sbjct: 648 SGDSESDSDSYSSRTSSQSKGNKSYLEVSSDTQLKDS 684
Score = 38 (18.4 bits), Expect = 1.2e-81, Sum P(3) = 1.2e-81
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 2119 GWNRCDREGH 2128
GW C RE H
Sbjct: 755 GWYDCQRETH 764
Score = 37 (18.1 bits), Expect = 3.4e-78, Sum P(3) = 3.4e-78
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 470 SEEESDSENDGKPDENGSQRGSKRSKEFKT 499
S + DSE+D ++ S R S +SK K+
Sbjct: 645 SSQSGDSESDS---DSYSSRTSSQSKGNKS 671
Score = 37 (18.1 bits), Expect = 3.4e-78, Sum P(3) = 3.4e-78
Identities = 34/172 (19%), Positives = 63/172 (36%)
Query: 1372 DYQQYEKLRGRQANTPTKTIGDTQGKRGGRVNTRSNHV-NSEDKSRVHTSEDRLNFKGWI 1430
DY+ Y K G + P + I G VN ++ V N + RV
Sbjct: 596 DYEHYIK-EGLEK--PVEIIRHYTGPGDQSVNPQNGFVKNRITEERVQILASSSQSGDSE 652
Query: 1431 REMELYNVSTNVNVSDDDGLDESYNMIKTPTPRKRNGA---SGESSVEREDVGGGKSXXX 1487
+ + Y+ T+ S G ++SY + + T K + + G S+E + + G +
Sbjct: 653 SDSDSYSSRTS---SQSKG-NKSYLEVSSDTQLKDSESIPMDGHISLE-QPLNGNDTPSL 707
Query: 1488 XXXXXXXMNKQNEVNLWHRENQGWNQKAQGWNEHTEVQTGLNQGWHQKTQGW 1539
+ +V H+E NQ+A+ + ++ + GW
Sbjct: 708 VEYQEST---EIQVKTRHKEGANHNQRAKQSRRNLPRRSSYRLQTEPQEDGW 756
>MGI|MGI:1858415 [details] [associations]
symbol:Ddx20 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 20"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IPI] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IDA] [GO:0019904
"protein domain specific binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1858415 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0000122
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:CH466608 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11218 HOGENOM:HOG000112184 HOVERGEN:HBG051330
KO:K13131 OMA:VEDYEHY OrthoDB:EOG4SF95N EMBL:AJ250027 EMBL:AF220454
EMBL:BC125471 EMBL:BC137721 IPI:IPI00122400 RefSeq:NP_059093.3
UniGene:Mm.272826 ProteinModelPortal:Q9JJY4 SMR:Q9JJY4
IntAct:Q9JJY4 STRING:Q9JJY4 PhosphoSite:Q9JJY4 PaxDb:Q9JJY4
PRIDE:Q9JJY4 Ensembl:ENSMUST00000090680 GeneID:53975 KEGG:mmu:53975
GeneTree:ENSGT00530000062880 InParanoid:Q059Z6 NextBio:310865
Bgee:Q9JJY4 CleanEx:MM_DDX20 Genevestigator:Q9JJY4
GermOnline:ENSMUSG00000027905 Uniprot:Q9JJY4
Length = 825
Score = 779 (279.3 bits), Expect = 2.9e-81, Sum P(2) = 2.9e-81
Identities = 194/499 (38%), Positives = 274/499 (54%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHDI RT DV+ FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D
Sbjct: 44 AHDIGGPRTRTGDVVLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLD 102
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ LI L Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 103 LIVQAKSGTGKTCVFSTIALDSLI-LENYSTQILILAPTREIAVQIHSVITAIGIKMEGL 161
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 162 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 221
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L +YM DP +R + L+G+KQ
Sbjct: 222 SFQEQINWIYSSLPASKQMLAVSATYPEVLANALTRYMRDPTFVRLNPSDPSLIGLKQYY 281
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L++ F E
Sbjct: 282 QVVNSY--PLAHKIFEEKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSKGFPTEC 339
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG +Q RL ++ K+ R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 340 ISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 399
Query: 355 RAGRYGTRGLVITIVS-AESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTL 413
RAGR+GT GL +T E + + N++ +P L + +NW V+
Sbjct: 400 RAGRFGTLGLTVTYCCRGEEENMMMKIAQKCNINLLPLPDPIPPGLMEECLNWDVEVKAA 459
Query: 414 L---AKPLDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQS 470
+ + P Q + Q E + + + T P PS T A K +
Sbjct: 460 MHTYSSPTVATQSPKKQVQKLERAFQSQRT-PGNQTPSPRNTSASALSARPKHSKPKLPV 518
Query: 471 EEESDS---ENDGKPDENG 486
+ S+ E P E+G
Sbjct: 519 KSHSECGVLEKAAPPQESG 537
Score = 84 (34.6 bits), Expect = 2.9e-81, Sum P(2) = 2.9e-81
Identities = 32/129 (24%), Positives = 53/129 (41%)
Query: 1785 LIVTLSEAGDSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSD----------ENSHD 1834
++V+ S++GDSE D + +S T N S +G S Q ++ E +
Sbjct: 643 MLVSSSQSGDSESDSDSCSSRTSSQSKGNKSYLEGSSDTQLKDTECTPVGGPLSLEQVQN 702
Query: 1835 GESDSHSVKSNESHFGNSRCQPKTAYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSW 1894
G V+ E+ + + K S QS + +S +Y V EP+ + SW
Sbjct: 703 GNDTPTQVEYQEAPETQVKARHKEGANQRSKQSRRNPARRS----SYRVQSEPQ--EESW 756
Query: 1895 RTCSSESAA 1903
C E+ A
Sbjct: 757 YDCHRETTA 765
Score = 56 (24.8 bits), Expect = 2.6e-78, Sum P(2) = 2.6e-78
Identities = 31/128 (24%), Positives = 47/128 (36%)
Query: 1801 GENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNSRCQPKTAY 1860
G + T ++ E AQ S S D ESDS S S S S+
Sbjct: 619 GPEAQTGNPQNGFVRNRVSEDRAQMLVSSSQSGDSESDSDSCSSRTS--SQSKGNKSYLE 676
Query: 1861 QSSSAQSEDGTSYK---SISWD-AYSVIDEPESYDVSWRTCSSESAAREKNSGQRSRGSG 1916
SS Q +D +S + + D P + + A ++ + QRS+ S
Sbjct: 677 GSSDTQLKDTECTPVGGPLSLEQVQNGNDTPTQVEYQEAPETQVKARHKEGANQRSKQSR 736
Query: 1917 DKAARKSA 1924
AR+S+
Sbjct: 737 RNPARRSS 744
Score = 45 (20.9 bits), Expect = 2.1e-78, Sum P(3) = 2.1e-78
Identities = 15/73 (20%), Positives = 32/73 (43%)
Query: 1858 TAYQSSSAQSEDGTSYKSISWD-AYSVIDEPESYDVSWRT--CSSESAAREKNSGQRSRG 1914
T ++ + ++G +S D A ++ +S D + CSS ++++ K + G
Sbjct: 618 TGPEAQTGNPQNGFVRNRVSEDRAQMLVSSSQSGDSESDSDSCSSRTSSQSKGNKSYLEG 677
Query: 1915 SGDKAARKSASLP 1927
S D + + P
Sbjct: 678 SSDTQLKDTECTP 690
Score = 42 (19.8 bits), Expect = 7.8e-77, Sum P(2) = 7.8e-77
Identities = 31/126 (24%), Positives = 51/126 (40%)
Query: 881 SSDYQSDSKPYGDRTKRRSRPRKNK-ENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSD 939
S D +SDS RT +S+ K+ E + +T +D T TP GG + E+ ++
Sbjct: 650 SGDSESDSDSCSSRTSSQSKGNKSYLEGSS--DTQLKD-TEC---TPVGGPLSLEQVQN- 702
Query: 940 GVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSFAGETPRSKGGFDSYLDQSMDSFLDK 999
G T+ E A R++ N R S P + + + +S+ D
Sbjct: 703 GNDTPTQVEYQEAPETQVKARHK-EGANQRSKQS--RRNPARRSSYRVQSEPQEESWYD- 758
Query: 1000 SCREES 1005
C E+
Sbjct: 759 -CHRET 763
Score = 39 (18.8 bits), Expect = 2.1e-78, Sum P(3) = 2.1e-78
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 1790 SEAGDSEVDVEGENS--PTDEDEDANNS-QNDGESTAQNSQ 1827
SE G E + S P +E NS Q E ++ NSQ
Sbjct: 522 SECGVLEKAAPPQESGCPAQLEEQVKNSVQTSVEDSSSNSQ 562
>UNIPROTKB|F1SBP3 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:11218
KO:K13131 OMA:VEDYEHY GeneTree:ENSGT00530000062880 EMBL:CU466482
RefSeq:XP_001928579.1 UniGene:Ssc.6364 Ensembl:ENSSSCT00000007430
GeneID:100152786 KEGG:ssc:100152786 Uniprot:F1SBP3
Length = 832
Score = 780 (279.6 bits), Expect = 1.3e-80, Sum P(3) = 1.3e-80
Identities = 206/539 (38%), Positives = 292/539 (54%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHD+ RT DVL FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D
Sbjct: 50 AHDVGGPRTRTGDVLLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLD 108
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ L+ L Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 109 LIVQAKSGTGKTCVFSTIALDSLV-LENLSTQILILAPTREIAVQIHSVITAIGVKMEGL 167
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 168 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 227
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L KYM +P +R + L+G+KQ
Sbjct: 228 SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMREPTFVRLNSSDPSLIGLKQYY 287
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L++ F A
Sbjct: 288 KVVNSY--PLAHKIFEEKAQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPAVC 345
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG +Q RL ++ K+ R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 346 ISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 405
Query: 355 RAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPD----NLTGDQINWTQRV 410
RAGR+GT GL +T + ++M +I N+ L+PD L + ++W V
Sbjct: 406 RAGRFGTLGLTVTYCCRG---EEENMMMKIAQKCHINLLLLPDPIPPGLMEECLDWDVEV 462
Query: 411 QTLLAKPLDQAQEREDVEQTAEESSKVENTKPLRGAPSKEV-----TKKGA----SKEGT 461
+ + D A + ++ K+E T R A V T A SK T
Sbjct: 463 EAAM-HTYDLANV--PTQPLKKQIQKIERTFQTRKAHGNHVASSRNTSVSALSVKSKNNT 519
Query: 462 KWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKD 520
K L E E P+E GS + ++ K V+ + E+ N + KD
Sbjct: 520 KQKLPMKSHSECGVVEKAASPEEPGS--AVQLEEQMKNS---VQNSVENSNNSQHHVKD 573
Score = 70 (29.7 bits), Expect = 6.8e-80, Sum P(2) = 6.8e-80
Identities = 25/125 (20%), Positives = 48/125 (38%)
Query: 1785 LIVTLSEAGDSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGE-SDSHSVK 1843
++ + S++GDSE D + +S T N S +G S Q S+ G S +
Sbjct: 648 ILASSSQSGDSESDSDSYSSRTSSRSKGNKSYLEGSSDTQLKDSESVPAGGHLSKGQPLS 707
Query: 1844 SNES-----HFGNSRCQPKTAYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWRTCS 1898
N + + + Q K ++ + ++ + + +PE + W C
Sbjct: 708 GNATPRLAAYHDSPEIQVKARHKEGAGHNQRAKQSRRNPSRRAAGRPQPEPQEERWYGCQ 767
Query: 1899 SESAA 1903
E+ A
Sbjct: 768 RETHA 772
Score = 62 (26.9 bits), Expect = 4.8e-79, Sum P(2) = 4.8e-79
Identities = 34/151 (22%), Positives = 63/151 (41%)
Query: 1789 LSEAGDSEVDV-EGENSPTDEDEDANNS--QND-GESTAQNSQSDENSHDGESDSHSVKS 1844
+ E + V++ P D+ + N +N E Q S S D ESDS S S
Sbjct: 608 IKEGSERPVEIIRHYTGPGDQTVNPQNGFVRNRIPEGRVQILASSSQSGDSESDSDSYSS 667
Query: 1845 NESHFGNSRCQPKTAYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWRTCSSESAAR 1904
S SR + +Y S+ ++ S +S+ + +P S + + R + +
Sbjct: 668 RTS----SRSKGNKSYLEGSSDTQLKDS-ESVPAGGHLSKGQPLSGNATPRLAAYHDSPE 722
Query: 1905 EKNSGQRSRGSG-DKAARKSASLPASQIALR 1934
+ + G+G ++ A++S P+ + A R
Sbjct: 723 IQVKARHKEGAGHNQRAKQSRRNPSRRAAGR 753
Score = 60 (26.2 bits), Expect = 1.3e-80, Sum P(3) = 1.3e-80
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 881 SSDYQSDSKPYGDRTKRRSRPRKNK-ENTDILNTLGQDKTSAHGRTPSGGH 930
S D +SDS Y RT RS+ K+ E + +T +D S P+GGH
Sbjct: 655 SGDSESDSDSYSSRTSSRSKGNKSYLEGSS--DTQLKDSESV----PAGGH 699
Score = 57 (25.1 bits), Expect = 1.6e-78, Sum P(2) = 1.6e-78
Identities = 31/120 (25%), Positives = 46/120 (38%)
Query: 792 LFRSEDQSNSVRIGDNDGTGNRSITRSKQNS---QSGDHTDLKDSNRPNANTDPSTGKNV 848
+ S QS D+D +R+ +RSK N + T LKDS A S G+ +
Sbjct: 648 ILASSSQSGDSE-SDSDSYSSRTSSRSKGNKSYLEGSSDTQLKDSESVPAGGHLSKGQPL 706
Query: 849 KDIQSREIKSYASLSMFSP-CQTTL-NKFDTQYNSSDYQSDSKPYGDRTKRRSRPRKNKE 906
+ + +Y SP Q +K +N QS P R R +P +E
Sbjct: 707 SGNATPRLAAYHD----SPEIQVKARHKEGAGHNQRAKQSRRNP-SRRAAGRPQPEPQEE 761
Score = 46 (21.3 bits), Expect = 3.9e-79, Sum P(3) = 3.9e-79
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 965 SVNSRKDH-SFAGETP-RSKGGFDSYLDQSMDSFLDKSCREESFLKRSHMPK 1014
S +S D S++ T RSKG SYL+ S D+ L S ES H+ K
Sbjct: 655 SGDSESDSDSYSSRTSSRSKGN-KSYLEGSSDTQLKDS---ESVPAGGHLSK 702
Score = 44 (20.5 bits), Expect = 1.3e-80, Sum P(3) = 1.3e-80
Identities = 16/63 (25%), Positives = 24/63 (38%)
Query: 1068 SDGDP---NRRPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSKISTERSNSNSAP 1124
S G P N P + H + + +K R K GH QR + R + P
Sbjct: 701 SKGQPLSGNATPRLA-AYHDSPEIQVKARHKEGAGHN-QRAKQSRRNPSRRAAGRPQPEP 758
Query: 1125 REK 1127
+E+
Sbjct: 759 QEE 761
Score = 42 (19.8 bits), Expect = 4.4e-78, Sum P(3) = 4.4e-78
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 1110 HSKISTERSNSNSAPREKSSDAKQAANEEENITGGNDENKTPVA 1153
+S ++ RS N + E SSD Q + E GG+ P++
Sbjct: 665 YSSRTSSRSKGNKSYLEGSSDT-QLKDSESVPAGGHLSKGQPLS 707
Score = 41 (19.5 bits), Expect = 1.3e-78, Sum P(3) = 1.3e-78
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 470 SEEESDSENDGKPDENGSQRGSKRSKEFKT 499
S + DSE+D ++ S R S RSK K+
Sbjct: 652 SSQSGDSESDS---DSYSSRTSSRSKGNKS 678
Score = 39 (18.8 bits), Expect = 1.3e-76, Sum P(2) = 1.3e-76
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 1791 EAGDS-EVDVEGENSPTDEDEDANNSQN 1817
E G + +++ + +NS + E++NNSQ+
Sbjct: 542 EPGSAVQLEEQMKNSVQNSVENSNNSQH 569
Score = 38 (18.4 bits), Expect = 5.7e-80, Sum P(3) = 5.7e-80
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 1500 EVNLWHRENQGWNQKAQ 1516
+V H+E G NQ+A+
Sbjct: 724 QVKARHKEGAGHNQRAK 740
>UNIPROTKB|F1MAM8 [details] [associations]
symbol:Ddx20 "Protein Ddx20" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:621744 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:11218
KO:K13131 GeneTree:ENSGT00530000062880 IPI:IPI00947925
RefSeq:NP_001178640.1 UniGene:Rn.137424 Ensembl:ENSRNOT00000068152
GeneID:84473 KEGG:rno:84473 NextBio:616964 ArrayExpress:F1MAM8
Uniprot:F1MAM8
Length = 824
Score = 762 (273.3 bits), Expect = 6.1e-80, Sum P(3) = 6.1e-80
Identities = 171/373 (45%), Positives = 233/373 (62%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHDI RT DV+ FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D
Sbjct: 43 AHDIGGPRTRTGDVVLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLD 101
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ LI L Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 102 LIVQAKSGTGKTCVFSTIALDSLI-LENYSTQILILAPTREIAVQIHSVITAIGIKMEGL 160
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 161 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 220
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L +YM DP +R + L+G+KQ
Sbjct: 221 SFQEQINWIYSSLPASKQMLAVSATYPEILANALTRYMRDPTFVRLNPSDPSLIGLKQYY 280
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L++ F E
Sbjct: 281 QVVNSY--PLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPTEC 338
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG +Q RL ++ K+ R+L++TDL +RGIDA V+LV+NL++P D TY+HR+G
Sbjct: 339 ISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIG 398
Query: 355 RAGRYGTRGLVIT 367
RAGR+GT GL +T
Sbjct: 399 RAGRFGTLGLTVT 411
Score = 78 (32.5 bits), Expect = 6.1e-80, Sum P(3) = 6.1e-80
Identities = 29/132 (21%), Positives = 53/132 (40%)
Query: 1785 LIVTLSEAGDSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVK- 1843
++V+ S++GDSE + + +S T N S +G S Q S+ S G ++
Sbjct: 642 MLVSSSQSGDSESESDSCSSRTSSQSKGNKSYLEGSSDTQLKDSECTSVGGPLSLEQIQN 701
Query: 1844 ----SNESHFGNS-RCQPKTAYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWRTCS 1898
S + + S Q K ++ + Q + +Y V + E+ + W C
Sbjct: 702 GNDTSTQVEYQESPETQVKARHKEGANQRSKPSRRNPPRRSSYRV--QTEAQEEGWHDCH 759
Query: 1899 SESAAREKNSGQ 1910
E+ A + Q
Sbjct: 760 RETNASSSDPYQ 771
Score = 42 (19.8 bits), Expect = 5.1e-75, Sum P(2) = 5.1e-75
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 968 SRKDHSFAGETPRSKGGFDSYLDQSMDSFL-DKSC 1001
S D + + +SKG SYL+ S D+ L D C
Sbjct: 654 SESDSCSSRTSSQSKGN-KSYLEGSSDTQLKDSEC 687
Score = 40 (19.1 bits), Expect = 5.9e-76, Sum P(3) = 5.9e-76
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 1896 TCSSESAAREKNSGQRSRGSGDKAARKS 1923
+CSS ++++ K + GS D + S
Sbjct: 658 SCSSRTSSQSKGNKSYLEGSSDTQLKDS 685
Score = 38 (18.4 bits), Expect = 6.1e-80, Sum P(3) = 6.1e-80
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1108 KRHSKISTERSNSNSAPREKSS 1129
K + STE S+SNS + K +
Sbjct: 546 KNSVQTSTEESSSNSLHQAKET 567
Score = 38 (18.4 bits), Expect = 9.5e-76, Sum P(3) = 9.5e-76
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 918 KTSAHGRT-PSGGHRTPERRRSDGVRNDTRDE 948
K A+ R+ PS R P RR S V+ + ++E
Sbjct: 724 KEGANQRSKPS--RRNPPRRSSYRVQTEAQEE 753
Score = 38 (18.4 bits), Expect = 9.5e-76, Sum P(3) = 9.5e-76
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 447 PSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQ-RGSK 492
P + S + + ++ QS + S+SE+D SQ +G+K
Sbjct: 626 PQNGFVRNRVSADRVQMLVSSSQSGD-SESESDSCSSRTSSQSKGNK 671
>UNIPROTKB|Q9UHI6 [details] [associations]
symbol:DDX20 "Probable ATP-dependent RNA helicase DDX20"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0015030
"Cajal body" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=TAS]
[GO:0005856 "cytoskeleton" evidence=TAS] [GO:0000387 "spliceosomal
snRNP assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0017053
GO:GO:0005654 GO:GO:0006917 GO:GO:0005856 GO:GO:0003677
GO:GO:0005681 GO:GO:0000244 GO:GO:0000122 GO:GO:0043065
GO:GO:0015030 GO:GO:0034660 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AF171063 EMBL:AF106019 EMBL:AK001506
EMBL:AL049557 EMBL:BC011556 EMBL:AL133598 IPI:IPI00005904
PIR:T43476 RefSeq:NP_009135.4 UniGene:Hs.591405 PDB:2OXC PDB:3B7G
PDBsum:2OXC PDBsum:3B7G ProteinModelPortal:Q9UHI6 SMR:Q9UHI6
DIP:DIP-32606N IntAct:Q9UHI6 MINT:MINT-96973 STRING:Q9UHI6
PhosphoSite:Q9UHI6 DMDM:12643886 PaxDb:Q9UHI6 PeptideAtlas:Q9UHI6
PRIDE:Q9UHI6 DNASU:11218 Ensembl:ENST00000369702 GeneID:11218
KEGG:hsa:11218 UCSC:uc001ebs.3 CTD:11218 GeneCards:GC01P112298
HGNC:HGNC:2743 HPA:CAB015427 HPA:HPA005516 HPA:HPA023541 MIM:606168
neXtProt:NX_Q9UHI6 PharmGKB:PA27209 HOGENOM:HOG000112184
HOVERGEN:HBG051330 InParanoid:Q9UHI6 KO:K13131 OMA:VEDYEHY
OrthoDB:EOG4SF95N PhylomeDB:Q9UHI6 EvolutionaryTrace:Q9UHI6
GenomeRNAi:11218 NextBio:42699 ArrayExpress:Q9UHI6 Bgee:Q9UHI6
CleanEx:HS_DDX20 Genevestigator:Q9UHI6 GermOnline:ENSG00000064703
Uniprot:Q9UHI6
Length = 824
Score = 776 (278.2 bits), Expect = 7.8e-79, Sum P(2) = 7.8e-79
Identities = 196/506 (38%), Positives = 277/506 (54%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
RT DVL FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D IVQ+KSGT
Sbjct: 52 RTGDVLLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGT 110
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ VF AL+ L+ L Q +ILAPTREIAVQI V+ ++G ++ L FIGGT
Sbjct: 111 GKTCVFSTIALDSLV-LENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGT 169
Query: 130 QVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWI 185
+ + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G F E I WI
Sbjct: 170 PLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWI 229
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
YS LP KQML VSATY L KYM DP +R + L+G+KQ ++ P
Sbjct: 230 YSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSY--P 287
Query: 246 SLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303
V EEK L +L S+ PFNQ ++FSN R + + + L++ F AE +SG +Q
Sbjct: 288 LAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQ 347
Query: 304 RLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG 363
RL ++ K R+L++TDL +RGIDA V+LV+NL++P D TY+HR+GRAGR+GT G
Sbjct: 348 RLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLG 407
Query: 364 LVITIVS-AESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTL-----LAKP 417
L +T E + + N++ +P L + ++W V+ +A
Sbjct: 408 LTVTYCCRGEEENMMMRIAQKCNINLLPLPDPIPSGLMEECVDWDVEVKAAVHTYGIASV 467
Query: 418 LDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGAS---KEGTKWNLTDGQSEEES 474
+Q +++ Q E + +++ A S+ + G S K TK L E
Sbjct: 468 PNQPLKKQI--QKIERTLQIQKAHGDHMASSRNNSVSGLSVKSKNNTKQKLPVKSHSECG 525
Query: 475 DSENDGKPDENGSQRGSKRSKEFKTQ 500
E P E G R S+ + Q
Sbjct: 526 IIEKATSPKELGCDRQSEEQMKNSVQ 551
Score = 64 (27.6 bits), Expect = 7.8e-79, Sum P(2) = 7.8e-79
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 1785 LIVTLSEAGDSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHD 1834
++ + S++GDSE D + +S T N S +G S Q S+ D
Sbjct: 642 VLASSSQSGDSESDSDSYSSRTSSQSKGNKSYLEGSSDNQLKDSESTPVD 691
Score = 64 (27.6 bits), Expect = 7.8e-79, Sum P(2) = 7.8e-79
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 881 SSDYQSDSKPYGDRTKRRSRPRKN-----KENT--DILNTLGQDKTSAHGRTPSGGHR-T 932
S D +SDS Y RT +S+ K+ +N D +T D+ S + P+G
Sbjct: 649 SGDSESDSDSYSSRTSSQSKGNKSYLEGSSDNQLKDSESTPVDDRISLE-QPPNGSDTPN 707
Query: 933 PER-RRSDGVRNDTRDERNGAYTGDKGGRN 961
PE+ + S G++ TR + + + RN
Sbjct: 708 PEKYQESPGIQMKTRLKEGASQRAKQSRRN 737
Score = 54 (24.1 bits), Expect = 8.9e-78, Sum P(2) = 8.9e-78
Identities = 29/105 (27%), Positives = 48/105 (45%)
Query: 1821 STAQNSQSDENSHDGESDSHSVKSNESHF-GNSRCQPKTAYQSSSAQSEDGTSYKSISWD 1879
S + +S+SD +S+ + S S K N+S+ G+S Q K S S +D S +
Sbjct: 647 SQSGDSESDSDSYSSRTSSQS-KGNKSYLEGSSDNQLK---DSESTPVDDRISLEQPPNG 702
Query: 1880 AYSVIDEPESYDVSWRTCSSESAAREKNSGQRSRGSGDKAARKSA 1924
S PE Y S ++ +E + QR++ S R+S+
Sbjct: 703 --SDTPNPEKYQES-PGIQMKTRLKE-GASQRAKQSRRNLPRRSS 743
Score = 51 (23.0 bits), Expect = 1.8e-77, Sum P(2) = 1.8e-77
Identities = 24/100 (24%), Positives = 39/100 (39%)
Query: 1828 SDENSHDGESDSHSVKSNESHFGNSRCQPKTAYQSSSAQSEDGTSYKSISWDAYSVIDEP 1887
S S D ESDS S S S S+ + +Y S+ ++ S + D S+ P
Sbjct: 645 SSSQSGDSESDSDSYSSRTS----SQSKGNKSYLEGSSDNQLKDSESTPVDDRISLEQPP 700
Query: 1888 ESYDVSWRTCSSESAAREKNSGQRSRGSGDKAARKSASLP 1927
D ES + + + G+ +A + +LP
Sbjct: 701 NGSDTPNPEKYQESPGIQMKT-RLKEGASQRAKQSRRNLP 739
Score = 45 (20.9 bits), Expect = 7.9e-77, Sum P(2) = 7.9e-77
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 1794 DSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSH--DGESDSHSVKSNES 1847
+ V V +S + + E S +D S+ +SQS N +G SD+ +K +ES
Sbjct: 637 EQRVPVLASSSQSGDSE----SDSDSYSSRTSSQSKGNKSYLEGSSDNQ-LKDSES 687
Score = 44 (20.5 bits), Expect = 2.8e-78, Sum P(3) = 2.8e-78
Identities = 14/55 (25%), Positives = 31/55 (56%)
Query: 470 SEEESDSENDGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKI 524
S + DSE+D ++ S R S +SK K+ ++G+ +++ D +++ + +I
Sbjct: 646 SSQSGDSESDS---DSYSSRTSSQSKGNKSY---LEGSSDNQLKDSESTPVDDRI 694
Score = 43 (20.2 bits), Expect = 1.3e-76, Sum P(2) = 1.3e-76
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 641 QGNNANQREIRDNSATLDKTEKESVNNVESKDERPPSTANNPDGTEWEDIP 691
+GN + DN L +E V++ S E+PP+ ++ P+ ++++ P
Sbjct: 668 KGNKSYLEGSSDNQ--LKDSESTPVDDRISL-EQPPNGSDTPNPEKYQESP 715
Score = 42 (19.8 bits), Expect = 2.8e-78, Sum P(3) = 2.8e-78
Identities = 23/107 (21%), Positives = 38/107 (35%)
Query: 1439 STNVNVSDDDGLDESYNMIKTPTPRKRNGASGESSVEREDVGGGKSXXXXXXXXXXMNKQ 1498
S + V D L++ N TP P K + G R G + KQ
Sbjct: 685 SESTPVDDRISLEQPPNGSDTPNPEKYQESPGIQMKTRLKEGASQRA-----------KQ 733
Query: 1499 NEVNLWHRENQGWNQKAQ--GWNE-HTEVQTGLNQGWHQKTQGWNEH 1542
+ NL R + +AQ W + H E++ + + + W +
Sbjct: 734 SRRNLPRRSSFRLQTEAQEDDWYDCHREIRLSFSDTYQDYEEYWRAY 780
Score = 41 (19.5 bits), Expect = 5.7e-78, Sum P(3) = 5.7e-78
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 965 SVNSRKDH-SFAGETPRSKGGFDSYLDQSMDSFLDKS 1000
S +S D S++ T G SYL+ S D+ L S
Sbjct: 649 SGDSESDSDSYSSRTSSQSKGNKSYLEGSSDNQLKDS 685
Score = 37 (18.1 bits), Expect = 5.5e-76, Sum P(2) = 5.5e-76
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 1842 VKSNESHFGNSRCQPKTAYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWR 1895
V ++ S G+S + +S+QS+ SY S D + + + ES V R
Sbjct: 642 VLASSSQSGDSESDSDSYSSRTSSQSKGNKSYLEGSSD--NQLKDSESTPVDDR 693
>UNIPROTKB|E9PSX0 [details] [associations]
symbol:Ddx20 "Protein Ddx20" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:621744 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00554119
Ensembl:ENSRNOT00000020984 ArrayExpress:E9PSX0 Uniprot:E9PSX0
Length = 826
Score = 751 (269.4 bits), Expect = 9.0e-79, Sum P(3) = 9.0e-79
Identities = 171/375 (45%), Positives = 233/375 (62%)
Query: 2 AHDIQ-KCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYD 60
AHDI RT DV+ FE+ +L+ +P+ +GL+ GF + SP+Q+ A P G D
Sbjct: 43 AHDIGGPRTRTGDVVLAEPADFES-LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLD 101
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
IVQ+KSGTGK+ VF AL+ LI L Q +ILAPTREIAVQI V+ ++G ++ L
Sbjct: 102 LIVQAKSGTGKTCVFSTIALDSLI-LENYSTQILILAPTREIAVQIHSVITAIGIKMEGL 160
Query: 121 HVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G
Sbjct: 161 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 220
Query: 178 -FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
F E I WIYS LP KQML VSATY L +YM DP +R + L+G+KQ
Sbjct: 221 SFQEQINWIYSSLPASKQMLAVSATYPEILANALTRYMRDPTFVRLNPSDPSLIGLKQYY 280
Query: 237 ALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++ P + EEK L +L S+ PFNQ ++FSN R + + + L++ F E
Sbjct: 281 QVVNSY--PLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPTEC 338
Query: 295 LSGA--QDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHR 352
+SG +Q RL ++ K+ R+L++TDL +RGIDA V+LV+NL++P D TY+HR
Sbjct: 339 ISGNGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHR 398
Query: 353 MGRAGRYGTRGLVIT 367
+GRAGR+GT GL +T
Sbjct: 399 IGRAGRFGTLGLTVT 413
Score = 78 (32.5 bits), Expect = 9.0e-79, Sum P(3) = 9.0e-79
Identities = 29/132 (21%), Positives = 53/132 (40%)
Query: 1785 LIVTLSEAGDSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVK- 1843
++V+ S++GDSE + + +S T N S +G S Q S+ S G ++
Sbjct: 644 MLVSSSQSGDSESESDSCSSRTSSQSKGNKSYLEGSSDTQLKDSECTSVGGPLSLEQIQN 703
Query: 1844 ----SNESHFGNS-RCQPKTAYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWRTCS 1898
S + + S Q K ++ + Q + +Y V + E+ + W C
Sbjct: 704 GNDTSTQVEYQESPETQVKARHKEGANQRSKPSRRNPPRRSSYRV--QTEAQEEGWHDCH 761
Query: 1899 SESAAREKNSGQ 1910
E+ A + Q
Sbjct: 762 RETNASSSDPYQ 773
Score = 42 (19.8 bits), Expect = 7.5e-74, Sum P(2) = 7.5e-74
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 968 SRKDHSFAGETPRSKGGFDSYLDQSMDSFL-DKSC 1001
S D + + +SKG SYL+ S D+ L D C
Sbjct: 656 SESDSCSSRTSSQSKGN-KSYLEGSSDTQLKDSEC 689
Score = 40 (19.1 bits), Expect = 8.7e-75, Sum P(3) = 8.7e-75
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 1896 TCSSESAAREKNSGQRSRGSGDKAARKS 1923
+CSS ++++ K + GS D + S
Sbjct: 660 SCSSRTSSQSKGNKSYLEGSSDTQLKDS 687
Score = 38 (18.4 bits), Expect = 9.0e-79, Sum P(3) = 9.0e-79
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1108 KRHSKISTERSNSNSAPREKSS 1129
K + STE S+SNS + K +
Sbjct: 548 KNSVQTSTEESSSNSLHQAKET 569
Score = 38 (18.4 bits), Expect = 1.4e-74, Sum P(3) = 1.4e-74
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 918 KTSAHGRT-PSGGHRTPERRRSDGVRNDTRDE 948
K A+ R+ PS R P RR S V+ + ++E
Sbjct: 726 KEGANQRSKPS--RRNPPRRSSYRVQTEAQEE 755
Score = 38 (18.4 bits), Expect = 1.4e-74, Sum P(3) = 1.4e-74
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 447 PSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQ-RGSK 492
P + S + + ++ QS + S+SE+D SQ +G+K
Sbjct: 628 PQNGFVRNRVSADRVQMLVSSSQSGD-SESESDSCSSRTSSQSKGNK 673
>ZFIN|ZDB-GENE-030131-202 [details] [associations]
symbol:ddx20 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 20" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-202
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 EMBL:BX664742 IPI:IPI00890438
Ensembl:ENSDART00000087037 Ensembl:ENSDART00000134226
Uniprot:F1R1C1
Length = 789
Score = 775 (277.9 bits), Expect = 1.4e-77, Sum P(2) = 1.4e-77
Identities = 181/473 (38%), Positives = 277/473 (58%)
Query: 2 AHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDA 61
AH++Q RT DVL + V F + +L+ KP+ +GL +GF + SPIQ+ A P G D
Sbjct: 36 AHELQSRTRTDDVLISGGVEFSS-LLLSKPVLEGLSASGFQRPSPIQLKAIPLGRCGLDL 94
Query: 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121
IVQ+KSGTGK+ VF AL+ LI L Q ++LAPTREIAVQI VV ++G+ ++ L
Sbjct: 95 IVQAKSGTGKTCVFTTIALDSLI-LENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLE 153
Query: 122 VDYFIGGTQVERPKRPVQ---IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI---- 174
FIGG + + K+ ++ I +GSPGRIKQ+I++ L + S+RLF++DEADKL+
Sbjct: 154 CHVFIGGRPISQDKQHLKKCHIAIGSPGRIKQLIEMGALMVSSIRLFVLDEADKLLEDDS 213
Query: 175 NTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQ 234
++ F E I WIYS LP KQML +SATY L +YM +P +R LLG+KQ
Sbjct: 214 SSSFQEQINWIYSSLPANKQMLALSATYPESLAQQLSRYMREPTFVRLNPTDPGLLGLKQ 273
Query: 235 LVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
++P P + ++ + L++L S+ PFNQ ++FSN R + + + L++ A
Sbjct: 274 YYKIVPSHSLPHKVFEEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVC 333
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
+SG Q RL ++ K+ + R+L++TDL +RGIDA V+LVINL++P D TY+HR+G
Sbjct: 334 ISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIG 393
Query: 355 RAGRYGTRGLVITIVS-AESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTL 413
RAGR+GT G+ +T E K ++ + +LD +P + + + ++TL
Sbjct: 394 RAGRFGTLGVAVTYCCHGEEENKMMAIAQKCSLDLMHLPDPIPPGIMEEACDHDVIIETL 453
Query: 414 LAKPL--DQAQ-EREDVEQTAEESSKVENTKPLRGAPSKEVT-KKGASKEGTK 462
+KP D + E++ ++ + SK + ++ VT K S+ TK
Sbjct: 454 -SKPKIPDNFKPEKKKKAKSEQMKSKPSRESHISVVITESVTGDKSCSRAETK 505
Score = 53 (23.7 bits), Expect = 1.4e-77, Sum P(2) = 1.4e-77
Identities = 36/125 (28%), Positives = 50/125 (40%)
Query: 1816 QNDGESTAQ---NSQSDENSHDGESDSHSVKSNESHFGNSRCQPKTAYQSSSAQSEDGTS 1872
Q DG +Q N D + D S+S+ ++ ++SH P A + S SE TS
Sbjct: 583 QYDGFYRSQDKVNGLHDAHDEDEASESYVLEESQSH---QDLPP--AQEVSELSSEQKTS 637
Query: 1873 YKSISWDAYSVIDEPESYDVSWRTCSSESAAREKNSGQRSRGSGDKAARKSASLPASQIA 1932
+S S V E S S T E+ K S R+ + A S +P Q A
Sbjct: 638 SESSSESEMEVESESSSSVPSKSTL--EALPDNKVSLVRNHSELAELALPSTRVP--QQA 693
Query: 1933 LRDGK 1937
R K
Sbjct: 694 TRSKK 698
Score = 49 (22.3 bits), Expect = 3.8e-77, Sum P(2) = 3.8e-77
Identities = 22/146 (15%), Positives = 59/146 (40%)
Query: 428 EQTAEESSKVENTKPLRGAP-SKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENG 486
E A ES +E ++ + P ++EV++ + ++ + + ++ + E ES+S +
Sbjct: 603 EDEASESYVLEESQSHQDLPPAQEVSELSSEQKTSSESSSESEMEVESESSSSVPSKSTL 662
Query: 487 SQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANSAEKSLEDKHGKKITNSF 546
+ + + + A ++A++ +++ +S + H + +
Sbjct: 663 EALPDNKVSLVRNHSELAELALPSTRVPQQATRSKKR----PCQPQSQDTAHHHNLPHKH 718
Query: 547 EAVGEIVQNDTETTKENNQTDEVPEE 572
+ + T + +TDE EE
Sbjct: 719 RTASKSSRRPTGPKRRTRETDETEEE 744
Score = 43 (20.2 bits), Expect = 1.6e-76, Sum P(2) = 1.6e-76
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 1075 RPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPRE 1126
+P SQ++ HH++ L K R K R KR ++ T+ + A ++
Sbjct: 702 QPQSQDTAHHHN-LPHKHRTASKSSRR--PTGPKRRTR-ETDETEEEEAGQD 749
Score = 42 (19.8 bits), Expect = 2.1e-76, Sum P(2) = 2.1e-76
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 1791 EAGDSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNES 1847
EA +S V +E S D S+ E + S E+ + ES+S S ++S
Sbjct: 605 EASESYV-LEESQSHQDLPPAQEVSELSSEQKTSSESSSESEMEVESESSSSVPSKS 660
Score = 38 (18.4 bits), Expect = 5.5e-76, Sum P(2) = 5.5e-76
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 1788 TLSEAG-DSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSD 1829
T SE+ +SE++VE E+S + + + D + + + S+
Sbjct: 636 TSSESSSESEMEVESESSSSVPSKSTLEALPDNKVSLVRNHSE 678
>UNIPROTKB|F1NRN3 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 EMBL:AADN02044991 IPI:IPI00820769
ProteinModelPortal:F1NRN3 Ensembl:ENSGALT00000002285 Uniprot:F1NRN3
Length = 676
Score = 754 (270.5 bits), Expect = 7.7e-76, Sum P(3) = 7.7e-76
Identities = 188/517 (36%), Positives = 273/517 (52%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
RT+DVL +L+ P+ GL+ GF + SP+Q+ A P G D IVQ+KSGT
Sbjct: 10 RTRDVLLPGGPSDFGSLLLSPPVLAGLEAAGFHRPSPVQLKAIPLGRCGLDLIVQAKSGT 69
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ VF AL+ L+ L Q +ILAPTREIAVQI V+ ++G ++ L FIGGT
Sbjct: 70 GKTCVFSTIALDALL-LDSPATQVLILAPTREIAVQIHAVITTIGIKMEGLECHVFIGGT 128
Query: 130 QVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWI 185
+ + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL+ G F E I WI
Sbjct: 129 PLSQDKVRLKKCHIAVGSPGRIKQLIELDYLNTASIRLFILDEADKLLEEGSFQEQINWI 188
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
YS LP KQML VSATY L YM +P +R L+G+KQ ++ P
Sbjct: 189 YSSLPANKQMLAVSATYPESLANALTMYMREPTFVRLNPTDPSLIGLKQYYKIVNSHPLP 248
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
+ ++ + L +L S+ PFNQ ++FSN R + + E L + F AE +SG+ +Q RL
Sbjct: 249 HKTFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLAEILTSRGFPAECISGSMNQSQRL 308
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
++ K+ R+L++TDL +RGIDA V+LVINL++P D TY+HR+GRAGR+GT GL
Sbjct: 309 DAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVINLDVPVDWETYMHRIGRAGRFGTLGLS 368
Query: 366 ITIVS-AESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQER 424
+T E + + NL +P + +W V+ ++ +
Sbjct: 369 VTYCCRGEEENMMMKIAQKCNLQLLPLPEPIPPGMMDQFDDWEVEVKPVVYTGASVNSDT 428
Query: 425 EDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDE 484
++ V+N P + +S E K L ++ ++S K
Sbjct: 429 VCLKPEEPVLQPVQNNSAEVPQPHSNLPVGNSSVEKPKNALEQKLVKKHTNSAKVEKSSR 488
Query: 485 NG--SQRGSKRSKEFKTQEKCVKGAGEDENGDRKASK 519
N S +K+ + +T + + G E D +A K
Sbjct: 489 NSKTSSCNTKQKNQVETVSR-MAGQSNTEVPDEEALK 524
Score = 48 (22.0 bits), Expect = 7.7e-76, Sum P(3) = 7.7e-76
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 684 GTEWEDIPS--DTIPNDETSNDN 704
G EW+++ DT+ ND S+D+
Sbjct: 585 GIEWKEVECNRDTVANDVLSDDS 607
Score = 37 (18.1 bits), Expect = 7.7e-76, Sum P(3) = 7.7e-76
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 1300 SHGDEANGLASEDADEYSGSSLNSSC 1325
SHG E N +D + +++ ++C
Sbjct: 617 SHGSENNSCFEAFSDRQAKNAVPTAC 642
>UNIPROTKB|F1P5C0 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917
"induction of apoptosis" evidence=IEA] [GO:0017053 "transcriptional
repressor complex" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:VEDYEHY
GeneTree:ENSGT00530000062880 EMBL:AADN02044991 IPI:IPI00582962
Ensembl:ENSGALT00000040229 Uniprot:F1P5C0
Length = 753
Score = 736 (264.1 bits), Expect = 6.3e-74, Sum P(3) = 6.3e-74
Identities = 183/503 (36%), Positives = 267/503 (53%)
Query: 26 VLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK 85
+L+ P+ GL+ GF + SP+Q+ A P G D IVQ+KSGTGK+ VF AL+ L+
Sbjct: 10 LLLSPPVLAGLEAAGFHRPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDALL- 68
Query: 86 LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK---RPVQIVV 142
L Q +ILAPTREIAVQI V+ ++G ++ L FIGGT + + K + I V
Sbjct: 69 LDSPATQVLILAPTREIAVQIHAVITTIGIKMEGLECHVFIGGTPLSQDKVRLKKCHIAV 128
Query: 143 GSP--GRIKQMIKLKYLNMDSVRLFIMDEADKLINTG-FVEDITWIYSQLPPMKQMLVVS 199
GSP GRIKQ+I+L YLN S+RLFI+DEADKL+ G F E I WIYS LP KQML VS
Sbjct: 129 GSPDVGRIKQLIELDYLNTASIRLFILDEADKLLEEGSFQEQINWIYSSLPANKQMLAVS 188
Query: 200 ATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL 259
ATY L YM +P +R L+G+KQ ++ P + ++ + L +L
Sbjct: 189 ATYPESLANALTMYMREPTFVRLNPTDPSLIGLKQYYKIVNSHPLPHKTFEEKTQHLQEL 248
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
S+ PFNQ ++FSN R + + E L + F AE +SG+ +Q RL ++ K+ R+L
Sbjct: 249 FSKIPFNQALVFSNLHSRAQHLAEILTSRGFPAECISGSMNQSQRLDAMAKLKQFHCRVL 308
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS-AESLVKFH 378
++TDL +RGIDA V+LVINL++P D TY+HR+GRAGR+GT GL +T E
Sbjct: 309 ISTDLTSRGIDAEKVNLVINLDVPVDWETYMHRIGRAGRFGTLGLSVTYCCRGEEENMMM 368
Query: 379 SLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEESSKVE 438
+ + NL +P + +W V+ ++ + ++ V+
Sbjct: 369 KIAQKCNLQLLPLPEPIPPGMMDQFDDWEVEVKPVVYTGASVNSDTVCLKPEEPVLQPVQ 428
Query: 439 NTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENG--SQRGSKRSKE 496
N P + +S E K L ++ ++S K N S +K+ +
Sbjct: 429 NNSAEVPQPHSNLPVGNSSVEKPKNALEQKLVKKHTNSAKVEKSSRNSKTSSCNTKQKNQ 488
Query: 497 FKTQEKCVKGAGEDENGDRKASK 519
+T + + G E D +A K
Sbjct: 489 VETVSR-MAGQSNTEVPDEEALK 510
Score = 48 (22.0 bits), Expect = 6.3e-74, Sum P(3) = 6.3e-74
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 684 GTEWEDIPS--DTIPNDETSNDN 704
G EW+++ DT+ ND S+D+
Sbjct: 571 GIEWKEVECNRDTVANDVLSDDS 593
Score = 37 (18.1 bits), Expect = 6.3e-74, Sum P(3) = 6.3e-74
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 1300 SHGDEANGLASEDADEYSGSSLNSSC 1325
SHG E N +D + +++ ++C
Sbjct: 603 SHGSENNSCFEAFSDRQAKNAVPTAC 628
>UNIPROTKB|J9P7U2 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000062880 EMBL:AAEX03011088 EMBL:AAEX03011089
Ensembl:ENSCAFT00000047345 Uniprot:J9P7U2
Length = 667
Score = 549 (198.3 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 119/257 (46%), Positives = 160/257 (62%)
Query: 117 VKNLHVDYFIGGTQVERPK---RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKL 173
++ L FIGGT + + K + I VGSPGRIKQ+I+L YLN S+RLFI+DEADKL
Sbjct: 1 MEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 60
Query: 174 INTG-FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGV 232
+ G F E I WIYS LP KQML VSATY L KYM DP +R + L+G+
Sbjct: 61 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGL 120
Query: 233 KQLVALIPECKNPSLRYVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF 290
KQ ++ P + EEK L +L S+ PFNQ ++FSN R + + + L+ F
Sbjct: 121 KQYYKIVNSY--PLAHKIFEEKAQHLQELFSRIPFNQALVFSNLHSRAQHLADILSAKGF 178
Query: 291 GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYL 350
AE +SG +Q RL ++ K R+L++TDL +RGIDA V+LV+NL++P D TY+
Sbjct: 179 PAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYM 238
Query: 351 HRMGRAGRYGTRGLVIT 367
HR+GRAGR+GT GL +T
Sbjct: 239 HRIGRAGRFGTLGLTVT 255
Score = 98 (39.6 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 29/123 (23%), Positives = 46/123 (37%)
Query: 1785 LIVTLSEAGDSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKS 1844
++ + S++GDSE D + +S T N S +G S Q S+ DG + +
Sbjct: 485 MLASSSQSGDSESDSDSYSSRTSSQSKGNKSYFEGSSDTQLKDSESTPMDGHTSLEQPLN 544
Query: 1845 NESHFGNSRCQPKTAYQSSSAQSEDGTSYKSIS------WDAYSVIDEPESYDVSWRTCS 1898
+ CQ Q+ + E S W +Y EP+ D W C
Sbjct: 545 GNDTPNPAECQESPETQTKARHKEGANQRAKQSRRNPPPWSSYRAQAEPQE-D-GWYDCC 602
Query: 1899 SES 1901
E+
Sbjct: 603 GET 605
Score = 60 (26.2 bits), Expect = 2.7e-54, Sum P(2) = 2.7e-54
Identities = 30/114 (26%), Positives = 44/114 (38%)
Query: 881 SSDYQSDSKPYGDRTKRRSRPRKNK-ENTDILNTLGQDKTSAHGRT----PSGGHRTP-- 933
S D +SDS Y RT +S+ K+ E + + T G T P G+ TP
Sbjct: 492 SGDSESDSDSYSSRTSSQSKGNKSYFEGSSDTQLKDSESTPMDGHTSLEQPLNGNDTPNP 551
Query: 934 -ERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSFAGETPRSKGGFD 986
E + S + R + GA K R +S + A P+ G +D
Sbjct: 552 AECQESPETQTKAR-HKEGANQRAKQSRRNPPPWSSYR----AQAEPQEDGWYD 600
Score = 58 (25.5 bits), Expect = 3.1e-55, Sum P(3) = 3.1e-55
Identities = 22/105 (20%), Positives = 40/105 (38%)
Query: 1793 GDSEVDV-EGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGN 1851
G S+ + + E++P D N G T ++ E+ H +N+ +
Sbjct: 519 GSSDTQLKDSESTPMDGHTSLEQPLN-GNDTPNPAECQESPETQTKARHKEGANQRAKQS 577
Query: 1852 SRCQPK-TAYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWR 1895
R P ++Y++ + EDG Y D + Y+ WR
Sbjct: 578 RRNPPPWSSYRAQAEPQEDGW-YDCCGETHPGFSDAYQDYEEYWR 621
Score = 43 (20.2 bits), Expect = 1.7e-52, Sum P(2) = 1.7e-52
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 470 SEEESDSENDGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANS 529
S + DSE+D ++ S R S +SK K+ +G+ + + D +++ +DG S
Sbjct: 489 SSQSGDSESDS---DSYSSRTSSQSKGNKSY---FEGSSDTQLKDSESTP----MDGHTS 538
Query: 530 AEKSL 534
E+ L
Sbjct: 539 LEQPL 543
Score = 38 (18.4 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 1092 LRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKS-SDAKQ 1133
L+K+++ R + K + +++ R+ S SA KS ++ KQ
Sbjct: 316 LKKQIQKMERNFQTQKAHGNHVASSRNTSVSALLVKSKNNTKQ 358
Score = 37 (18.1 bits), Expect = 3.9e-55, Sum P(3) = 3.9e-55
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 965 SVNSRKDH-SFAGETPRSKGGFDSYLDQSMDSFLDKS 1000
S +S D S++ T G SY + S D+ L S
Sbjct: 492 SGDSESDSDSYSSRTSSQSKGNKSYFEGSSDTQLKDS 528
>FB|FBgn0011802 [details] [associations]
symbol:Gem3 "Gemin3" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IMP] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0022618 "ribonucleoprotein complex
assembly" evidence=IMP] [GO:0071254 "cytoplasmic U snRNP body"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014296 GO:GO:0007528 GO:GO:0006200 GO:GO:0003676
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0016779 HSSP:P10081 KO:K13131
GeneTree:ENSGT00530000062880 GO:GO:0071254 GO:GO:0022618
EMBL:AF160911 RefSeq:NP_524019.1 UniGene:Dm.921 SMR:Q9V3C4
IntAct:Q9V3C4 MINT:MINT-750334 STRING:Q9V3C4
EnsemblMetazoa:FBtr0076292 EnsemblMetazoa:FBtr0334100 GeneID:39195
KEGG:dme:Dmel_CG6539 UCSC:CG6539-RA CTD:39195 FlyBase:FBgn0011802
InParanoid:Q9V3C4 OMA:TPTKIQA OrthoDB:EOG44MW6X GenomeRNAi:39195
NextBio:812430 Uniprot:Q9V3C4
Length = 1028
Score = 600 (216.3 bits), Expect = 6.5e-56, Sum P(2) = 6.5e-56
Identities = 160/584 (27%), Positives = 298/584 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
R+ DV FE ++ + + + GL+ N FV + IQ AA P L D I+QSKSGT
Sbjct: 15 RSSDVAPGQVKTFE-ELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGT 73
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK++++V+A + + QP +I+ PTRE+A+Q+ D + ++ FIGGT
Sbjct: 74 GKTLIYVIAVVQSF-NPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGT 132
Query: 130 QVERPKRPV---QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVED-ITWI 185
V + ++ + ++++G+PGR+ + + + ++ +RL ++DEAD+L T ++ ++ +
Sbjct: 133 DVAKDRKRMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKL 192
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
+P +Q++ SATY + L K M P+LI + LLG++Q V +P+ +N
Sbjct: 193 IEAMPKNRQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQ-QNN 251
Query: 246 SLRYVDEEKKLV-QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
S+ + + +++ Q+ +Q P+ Q +IF++ Q+R + L + +SGA +Q R
Sbjct: 252 SVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSER 311
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
L + ++ +RILV TDL ARG+D+ + +LVIN++ P D TYLHR+GRAGR+G++G+
Sbjct: 312 LHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGI 371
Query: 365 VIT-IVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQE 423
IT I S + +F + +I A++V P ++ N+ + + +
Sbjct: 372 AITFIASKKESQRFREMSKKIAT--AWSVLEFPKEPMPNEFNFWDFEKYNFDYYIKEENP 429
Query: 424 REDVEQTAEESSKVENTKPLR-GAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKP 482
+++ +E+ EN + + + G ++ K + E + + E + P
Sbjct: 430 LQEMPMPIKENRSKENVDASSVDLENLQKDQDGKRRDPDKLPVALENVETQKELELENLP 489
Query: 483 DENGSQRGSK-RSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANSAEKSLEDKHGKK 541
+ + + + + + KE Q K +K G K +K E++ +N+ K + +
Sbjct: 490 ESSHNNKNLRVKEKEIVRQGK-LKETNSKAGGS-KTNKTERR-KKSNTPSKLQKQITEVQ 546
Query: 542 ITNSFEAVGEIVQNDTETTKENNQTDEVPEENGLVGN---PNKA 582
T +Q D + T + + V NG GN P+K+
Sbjct: 547 QTPEITVNKYYMQEDIQRTADGKEYHPV---NG-AGNHQVPSKS 586
Score = 68 (29.0 bits), Expect = 6.5e-56, Sum P(2) = 6.5e-56
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 787 NNVAALFRSEDQSNSVRIGDNDGTGNRSITRSKQNSQSGDHTDLKDSNRPNANTDPSTGK 846
NN +A F S+D+S++ + D++ N S T S S + + S +++ D T
Sbjct: 939 NNSSAFFISDDESDTESLTDSEAGSNVSATGS-----SSQRSSVASSTYESSDDDSVTVT 993
Query: 847 NVKDIQSRE 855
NV +Q+ +
Sbjct: 994 NVSSMQNAQ 1002
Score = 55 (24.4 bits), Expect = 1.1e-54, Sum P(4) = 1.1e-54
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 1790 SEAGDSEVDVEGENSPTDEDEDANN---SQNDGESTAQNSQS---DENSHDGESDSHSVK 1843
S+ DS+ EGE D+++D ++ + + G +Q S S D + ++ ES S
Sbjct: 880 SDTEDSQEYGEGEEIIVDDEDDGSDGGPNSSSGFVESQESVSSGIDTSVYETESTGASGN 939
Query: 1844 SNESHF---GNSRCQPKTAYQSSSAQSEDGTSYK--SISWDAYSVIDE 1886
++ + F S + T ++ S S G+S + S++ Y D+
Sbjct: 940 NSSAFFISDDESDTESLTDSEAGSNVSATGSSSQRSSVASSTYESSDD 987
Score = 53 (23.7 bits), Expect = 1.7e-54, Sum P(4) = 1.7e-54
Identities = 28/108 (25%), Positives = 50/108 (46%)
Query: 1810 EDANNSQNDGESTAQNSQSDENSHDGESD-SHSVKSNESHFGNSRCQPKTAYQSSSAQSE 1868
E + S++D E + + + +E D E D S ++ S F S+ + +S ++E
Sbjct: 873 EIGSGSESDTEDSQEYGEGEEIIVDDEDDGSDGGPNSSSGFVESQESVSSGIDTSVYETE 932
Query: 1869 D-GTSYKSISWDAYSVIDEPESYDVSWRTCSSESAAREKNSGQRSRGS 1915
G S + S A+ + D+ ES D T SE+ + +G S+ S
Sbjct: 933 STGASGNNSS--AFFISDD-ES-DTESLT-DSEAGSNVSATGSSSQRS 975
Score = 51 (23.0 bits), Expect = 2.8e-54, Sum P(4) = 2.8e-54
Identities = 32/151 (21%), Positives = 57/151 (37%)
Query: 1809 DEDANNSQNDGESTAQNSQSDENSHDGESDSHS--VKSNES-HFGNSRCQPKTAYQSSSA 1865
+ D +SQ GE +++ DG +S S V+S ES G +T +S
Sbjct: 879 ESDTEDSQEYGEGEEIIVDDEDDGSDGGPNSSSGFVESQESVSSGIDTSVYETESTGASG 938
Query: 1866 QSEDGTSYKSISWDAYSVIDEPESYDVSWRTCSSESAAREKNSGQRSRGSGDKAARKSAS 1925
+ D S+ D +VS SS+ ++ ++ + S S+
Sbjct: 939 NNSSAFFISDDESDTESLTDSEAGSNVSATGSSSQRSSVASSTYESSDDDSVTVTNVSSM 998
Query: 1926 LPASQIALRDGKGDFKSPRKASHSLKDGKRY 1956
A + L+ ++ ASH K+ + Y
Sbjct: 999 QNAQSLWLQTFNMQYQFI--ASHVAKNLQNY 1027
Score = 49 (22.3 bits), Expect = 1.1e-54, Sum P(4) = 1.1e-54
Identities = 22/105 (20%), Positives = 44/105 (41%)
Query: 997 LDKSCREESFLKRSHMPKRDLVVYDDAFDMFSPAANNLDEYEID-YVEQPVDEKKSRRE- 1054
L K +E FLKR H ++ + D+A F + L + ++ Y + KK +E
Sbjct: 765 LQKFTNQERFLKRLHKYAKNQFI-DNARVGF--LLDKLYKSILEMYYNSAKERKKHFKEA 821
Query: 1055 LSQKMDS-DRYRPDSDGDPNRRPSSQESLHHNDSLDIKLRKKLKP 1098
+ + + S D Y + ++ L + S+ + + + P
Sbjct: 822 MKESLKSIDNYESQESSESEEEEEEEKDLKNKLSVHVTNQMDIPP 866
Score = 46 (21.3 bits), Expect = 1.1e-54, Sum P(4) = 1.1e-54
Identities = 44/204 (21%), Positives = 73/204 (35%)
Query: 821 NSQSGDHTDLKDSNRPNANTDPSTGKNVKDIQSREIKSYASLSMFSPCQTTLNKFDTQYN 880
NS++G K R +NT K + ++Q +P + T+NK+ Y
Sbjct: 515 NSKAGGSKTNKTERRKKSNTPSKLQKQITEVQQ------------TP-EITVNKY---YM 558
Query: 881 SSDYQ--SDSKPYGDRTKRRSRPRKNKENTDILNTLGQDKTSAHG-----RTPSGGHRTP 933
D Q +D K Y + +K N + + + T + PS TP
Sbjct: 559 QEDIQRTADGKEYHPVNGAGNHQVPSKSNQKPVEFISPELTPTLTPLELTQEPSPTTVTP 618
Query: 934 ERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSFAGETPRSKGGFDSYLDQSM 993
++ + N T T +N S N+ D S G+ S D+S
Sbjct: 619 PAPPANSINNKTYCLAAPTQTSSMTIQNMVIS-NTVDDASSISSDSMVVCGYHS--DRSY 675
Query: 994 DSFLDKSCREESFLKRSHMPKRDL 1017
D++ S EE + + +R L
Sbjct: 676 DTYYATSDEEEIWNRLMSKQRRQL 699
Score = 44 (20.5 bits), Expect = 1.5e-53, Sum P(5) = 1.5e-53
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 1787 VTLSEAGDSEVDVEGENSPTDEDEDANNSQNDGES-TAQNSQSDENS 1832
+T SEAG S V G +S + +D +S T N S +N+
Sbjct: 956 LTDSEAG-SNVSATGSSSQRSSVASSTYESSDDDSVTVTNVSSMQNA 1001
Score = 42 (19.8 bits), Expect = 1.5e-53, Sum P(5) = 1.5e-53
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 1284 AVFLPNSSSEDDCDGLSHGDEANGLASEDADEYSGSSLNSS 1324
AV + + S D D +G E + +D D+ S NSS
Sbjct: 871 AVEIGSGSESDTEDSQEYG-EGEEIIVDDEDDGSDGGPNSS 910
Score = 42 (19.8 bits), Expect = 8.1e-53, Sum P(5) = 8.1e-53
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 1088 LDIKLRKKLKPGHRLQRNSKKRHSKISTERS--NSNSAPREKSSDAKQAANEEENI 1141
LD KL K + + +K+H K + + S + ++ ++SS++++ EE+++
Sbjct: 796 LD-KLYKSILEMYYNSAKERKKHFKEAMKESLKSIDNYESQESSESEEEEEEEKDL 850
Score = 40 (19.1 bits), Expect = 3.8e-53, Sum P(4) = 3.8e-53
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 1791 EAGD-SEVDVEGENSPTDEDEDANNSQNDGESTAQNSQS 1828
E G SE D E + +E + ++DG NS S
Sbjct: 873 EIGSGSESDTEDSQEYGEGEEIIVDDEDDGSDGGPNSSS 911
Score = 38 (18.4 bits), Expect = 2.8e-52, Sum P(3) = 2.8e-52
Identities = 23/112 (20%), Positives = 39/112 (34%)
Query: 883 DYQSDSKPYGDRTKRRSRPRKNKENTDILNTLG-QDKTSAHGRTPSGGHRTPERRRSDG- 940
+Y+S + + + KNK + + N + A SG E + G
Sbjct: 831 NYESQESSESEEEEEEEKDLKNKLSVHVTNQMDIPPMPQAAVEIGSGSESDTEDSQEYGE 890
Query: 941 ----VRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHS-FAGETPRSKGGFDS 987
+ +D D +G G SV+S D S + E+ + G S
Sbjct: 891 GEEIIVDDEDDGSDGGPNSSSGFVESQESVSSGIDTSVYETESTGASGNNSS 942
>DICTYBASE|DDB_G0277527 [details] [associations]
symbol:ddx20 "component of gems 3" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0277527 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0006397 GenomeReviews:CM000151_GR
GO:GO:0003676 EMBL:AAFI02000020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q9UHL0 RefSeq:XP_642653.2
ProteinModelPortal:Q54ZI9 EnsemblProtists:DDB0266359 GeneID:8621069
KEGG:ddi:DDB_G0277527 Uniprot:Q54ZI9
Length = 849
Score = 436 (158.5 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 148/591 (25%), Positives = 258/591 (43%)
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK----- 193
QI+VG+PG+IK +I+ +L D++++ IMDEADKL++ F + I WIYS +
Sbjct: 226 QIIVGTPGKIKSLIENLHLRTDTLKMVIMDEADKLLDASFSKTINWIYSAIGNGNSNKNN 285
Query: 194 -------QMLVVSATYSHDNLATLQKYMVDPLL--IRPEDATRPLLGVKQLVALIPE--C 242
QML SATY + L+ YM + L IR T L G+KQ +
Sbjct: 286 SSSGSGIQMLAFSATYPSYLINLLKLYMNNENLVEIRLCSDTPSLEGIKQYYQIFRNDFT 345
Query: 243 KNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQK 302
+N + ++ K LV +L Q F Q +IF N+++R E + L + +++G Q+QK
Sbjct: 346 ENNYKTFQNKCKSLVLVLEQVSFYQAIIFCNHKIRGEELTRQLNREGWPTAFIAGGQNQK 405
Query: 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR 362
RL+++ + K +RILV+TDL +RGID V+LVINL++P D TY HR+GR GR+GT
Sbjct: 406 DRLSTMSALKSFNIRILVSTDLISRGIDVERVNLVINLDLPKDHETYFHRIGRTGRFGTY 465
Query: 363 GLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQ 422
G+ IT ++ +S+ + + N +N + + L+ +
Sbjct: 466 GVSITFINMKSIQQQQQQQQQ-QQQQIENENENENNNNNEGFQEIDFINQLIQEYSVDIT 524
Query: 423 EREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGK- 481
ER D + EE + + P + + ++ T L + Q EE +EN+ +
Sbjct: 525 ERVDNDIIPEELYSYQLSNP---NDQQSLANLKLKQQQTI--LLNKQLEELKINENENEN 579
Query: 482 --PDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANSAEKSLEDKHG 539
+E+ + + ++ Q + E E D Q + ++ +D +
Sbjct: 580 QYQNEDEEEEQEEDDYHYENQHQNEDEEEEQEEDDYHYENQHQNEEEEQEQQEEDDDNYN 639
Query: 540 KKITNS---FEAVGEIVQNDTET--TKENNQTDEVPEENGLVGNPNKAEVGDLNECESCT 594
+ N +E + + + TE NN + + G N N N ++
Sbjct: 640 YENDNDSEEYEFIDDSIIEQTEYYYLNSNNNNNNNKNKYGNTINNNHYRNSSFNGPKN-- 697
Query: 595 DSFHMNEHSDENDLGNNTKESQXXXXXXXXXXXXXXXXXXXXXX-XPQGNNANQREIRDN 653
S + N+ ++N N+ + SQ PQ + + DN
Sbjct: 698 -SINNNKFKNKNINNNDQRNSQSNGIKKKVNTNNNNFYPHYYNNPYPQNYYYDYQYFSDN 756
Query: 654 SATLDKTEKESVNNVESKDERPPSTANNPDGTEWEDIPSDTIPNDETSNDN 704
S + + NN + + + NN + + ++ N+ +N+N
Sbjct: 757 SYYNNNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 807
Score = 215 (80.7 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 46/118 (38%), Positives = 71/118 (60%)
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK------------ 135
+++P +I+APTREIAVQI DV++S+ + K + + FIGG K
Sbjct: 159 IRKPLVLIIAPTREIAVQIKDVIKSISKYCKRIKCEVFIGGLNSNNNKDENNNNILNNED 218
Query: 136 ----RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
QI+VG+PG+IK +I+ +L D++++ IMDEADKL++ F + I WIYS +
Sbjct: 219 VNRLNGTQIIVGTPGKIKSLIENLHLRTDTLKMVIMDEADKLLDASFSKTINWIYSAI 276
Score = 164 (62.8 bits), Expect = 2.4e-49, Sum P(3) = 2.4e-49
Identities = 48/164 (29%), Positives = 89/164 (54%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
RT D+ ++ F +++L++K + +GL++ G+ + SPIQ+ A P ++G D I Q+KSGT
Sbjct: 45 RTNDIEIEDNITF-SELLLQKEVLKGLEDGGYQRPSPIQLKAIPLGISGVDLIAQAKSGT 103
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+IVF V AL +++ ++ +L +E+ T + + + D ++ T
Sbjct: 104 GKTIVFGVIALECVLR------ESKLLRQKQEL--NKTQLTNQTNKQLLEMDDDTYVE-T 154
Query: 130 QVERPKRPVQIVVGSPGR-----IKQMIKL--KYLNMDSVRLFI 166
V ++P+ +++ +P R IK +IK KY +FI
Sbjct: 155 MVGIIRKPLVLII-APTREIAVQIKDVIKSISKYCKRIKCEVFI 197
Score = 78 (32.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 23/97 (23%), Positives = 43/97 (44%)
Query: 1802 ENSPTDEDEDANNSQNDGESTAQNSQSD--ENSHDGESDSHSVKSNESHFGNSRCQPKTA 1859
E +E+E+ N QN+ E Q EN H E + + ++ H+ N Q +
Sbjct: 568 EELKINENENENQYQNEDEEEEQEEDDYHYENQHQNEDEEEEQEEDDYHYENQH-QNEEE 626
Query: 1860 YQSSSAQSEDGTSYKSIS-WDAY-----SVIDEPESY 1890
Q + +D +Y++ + + Y S+I++ E Y
Sbjct: 627 EQEQQEEDDDNYNYENDNDSEEYEFIDDSIIEQTEYY 663
Score = 63 (27.2 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 1791 EAGDSEVDVEGENSPTDEDEDANNSQNDG--ESTAQNSQSDENSHDGESDSHSVKS-NES 1847
E E D EN +EDE+ ++D E+ QN + ++ + + D+++ ++ N+S
Sbjct: 587 EEEQEEDDYHYENQHQNEDEEEEQEEDDYHYENQHQNEEEEQEQQEEDDDNYNYENDNDS 646
Score = 60 (26.2 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 21/112 (18%), Positives = 46/112 (41%)
Query: 1035 DEYEIDYVEQPVDEKKSRRELSQKMDSDRYRPDSDGDPNRRPSSQESL------HHNDSL 1088
++ E DY + + + + Q+ D D Y ++D D +S+ ++ +S
Sbjct: 609 EQEEDDYHYENQHQNEEEEQEQQEEDDDNYNYENDNDSEEYEFIDDSIIEQTEYYYLNSN 668
Query: 1089 DIKLRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKSSDAKQAANEEEN 1140
+ K K G+ + N + S + S +N+ + K+ + N + N
Sbjct: 669 NNNNNNKNKYGNTINNNHYRNSSFNGPKNSINNNKFKNKNINNNDQRNSQSN 720
Score = 58 (25.5 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 9/51 (17%), Positives = 31/51 (60%)
Query: 1802 ENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNS 1852
+NS + + + NN+ N+ + N+ ++ N+++ +++++ +N ++ N+
Sbjct: 755 DNSYYNNNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 805
Score = 58 (25.5 bits), Expect = 3.5e-14, Sum P(3) = 3.5e-14
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 1791 EAGDSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGES-DSHSVKSNESHF 1849
E E D EN +E+E+ + D ++ N ++D +S + E D ++ E ++
Sbjct: 607 EEEQEEDDYHYENQHQNEEEEQEQQEEDDDN--YNYENDNDSEEYEFIDDSIIEQTEYYY 664
Query: 1850 GNS 1852
NS
Sbjct: 665 LNS 667
Score = 57 (25.1 bits), Expect = 3.5e-14, Sum P(3) = 3.5e-14
Identities = 27/119 (22%), Positives = 49/119 (41%)
Query: 1032 NNLDEYEIDYVEQPVDEKKSRRELSQKMDSDRYRPDSDGDPNRRPSSQESLHHNDSLDIK 1091
NN EID++ Q + E ++++++D+D + P+ Q+SL +
Sbjct: 502 NNEGFQEIDFINQLIQEYSV--DITERVDNDIIPEELYSYQLSNPNDQQSLAN------- 552
Query: 1092 LRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKSSDAKQAANEE-ENITGGNDENK 1149
KLK + N + KI+ E N N E + ++ + EN DE +
Sbjct: 553 --LKLKQQQTILLNKQLEELKIN-ENENENQYQNEDEEEEQEEDDYHYENQHQNEDEEE 608
Score = 57 (25.1 bits), Expect = 3.5e-14, Sum P(3) = 3.5e-14
Identities = 44/254 (17%), Positives = 86/254 (33%)
Query: 469 QSEEESDSENDGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDE---QKID 525
Q +++ EN+ + + N + G + +F Q E D +E ++
Sbjct: 484 QQQQQQQIENENENENNNNNEGFQEI-DFINQLIQEYSVDITERVDNDIIPEELYSYQLS 542
Query: 526 GANSAEK--SLEDKHGKKI--TNSFEAVGEIVQNDTETTKENNQTDEVPEENGLV---GN 578
N + +L+ K + I E + +I +N+ E +N +E EE+ +
Sbjct: 543 NPNDQQSLANLKLKQQQTILLNKQLEEL-KINENENENQYQNEDEEEEQEEDDYHYENQH 601
Query: 579 PNKAEVGDLNECESCTDSFHMNEHSD----ENDLGNNTKESQXXXXXXXXXXXXXXXXXX 634
N+ E + E + ++ H NE + E D N E+
Sbjct: 602 QNEDEEEEQEEDDYHYENQHQNEEEEQEQQEEDDDNYNYENDNDSEEYEFIDDSIIEQTE 661
Query: 635 XXXXXPQGNNANQREIRDNSATLDKTEKESVNNVESKDERPPSTANNPDGTEWEDIPSDT 694
NN N + N+ + S N ++ N + + + S+
Sbjct: 662 YYYLNSNNNNNNNKNKYGNTINNNHYRNSSFNGPKNSINNNKFKNKNINNNDQRNSQSNG 721
Query: 695 IPNDETSNDNKLTP 708
I +N+N P
Sbjct: 722 IKKKVNTNNNNFYP 735
Score = 55 (24.4 bits), Expect = 2.4e-54, Sum P(3) = 2.4e-54
Identities = 9/50 (18%), Positives = 29/50 (58%)
Query: 1803 NSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNS 1852
N+ + + + NN+ N+ + N+ ++ N+++ +++++ + H GN+
Sbjct: 767 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYYQQH-GNN 815
Score = 55 (24.4 bits), Expect = 5.6e-14, Sum P(3) = 5.6e-14
Identities = 40/226 (17%), Positives = 84/226 (37%)
Query: 697 NDETSNDNKLTPVDFDYINDFVNQTP---SETGDRPLVHGPNSVPKIDTPSDDYLVANMK 753
N+ +N+N + D+IN + + +E D ++ ++ P+D +AN+K
Sbjct: 495 NENENNNNNEGFQEIDFINQLIQEYSVDITERVDNDIIPEELYSYQLSNPNDQQSLANLK 554
Query: 754 ACLTNDSVRVQVLMEKLDHVDASVLADWILNKHNNVAAL---FRSEDQSNSVRIGDNDGT 810
++ + +E+L ++ + + N+ + E+Q + +
Sbjct: 555 L-KQQQTILLNKQLEELK-INENENENQYQNEDEEEEQEEDDYHYENQHQNEDEEEEQEE 612
Query: 811 GNRSITRSKQNSQSGDHTDLKDSNRPN-ANTDPSTGKNVKDIQSREIKSYASLSMFSPCQ 869
+ QN + +D + N N + S D E Y L+ +
Sbjct: 613 DDYHYENQHQNEEEEQEQQEEDDDNYNYENDNDSEEYEFIDDSIIEQTEYYYLNSNNNNN 672
Query: 870 TTLNKFDTQYNSSDYQSDSKPYGDRTKRRSRPRKNKE--NTDILNT 913
NK+ N++ Y++ S G + + KNK N D N+
Sbjct: 673 NNKNKYGNTINNNHYRNSSFN-GPKNSINNNKFKNKNINNNDQRNS 717
Score = 54 (24.1 bits), Expect = 3.0e-54, Sum P(3) = 3.0e-54
Identities = 7/47 (14%), Positives = 28/47 (59%)
Query: 1803 NSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHF 1849
N + + + NN+ N+ + N+ ++ N+++ +++++ +N +++
Sbjct: 762 NYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNY 808
Score = 53 (23.7 bits), Expect = 3.8e-54, Sum P(3) = 3.8e-54
Identities = 8/43 (18%), Positives = 26/43 (60%)
Query: 1813 NNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNSRCQ 1855
NN+ N+ + N+ ++ N+++ +++++ +N ++ N+ Q
Sbjct: 768 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYYQ 810
Score = 53 (23.7 bits), Expect = 3.8e-54, Sum P(3) = 3.8e-54
Identities = 7/46 (15%), Positives = 28/46 (60%)
Query: 1803 NSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESH 1848
N+ + + + NN+ N+ + N+ ++ N+++ +++++ +N ++
Sbjct: 761 NNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 806
Score = 52 (23.4 bits), Expect = 4.9e-54, Sum P(3) = 4.9e-54
Identities = 7/48 (14%), Positives = 27/48 (56%)
Query: 1803 NSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFG 1850
N+ + + + NN+ N+ + N+ ++ N+++ ++++ + + +G
Sbjct: 771 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYYQQHGNNPYG 818
Score = 52 (23.4 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 26/151 (17%), Positives = 53/151 (35%)
Query: 784 NKHNNVAALFRSEDQSNSVRIGDNDGTGNRSITRSKQNSQSGDHTDLKDSNRPNANTDPS 843
N +NN + + +N R +G N SI +K +++ ++ D ++S +
Sbjct: 669 NNNNNNKNKYGNTINNNHYRNSSFNGPKN-SINNNKFKNKNINNNDQRNSQSNGIKKKVN 727
Query: 844 TGKN--VKDIQSREIKS--YASLSMFSPCQTTLNKFDTQYNSSDYQSDSKPYGDRTKRRS 899
T N + Y FS N ++ N+++ +++ + +
Sbjct: 728 TNNNNFYPHYYNNPYPQNYYYDYQYFSDNSYYNNNYNNNNNNNNNNNNNNNNNNNNNNNN 787
Query: 900 RPRKNKENTDILNTLGQDKT--SAHGRTPSG 928
N N + N + HG P G
Sbjct: 788 NNNNNNNNNNNNNNNNNNNNYYQQHGNNPYG 818
Score = 51 (23.0 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 1800 EGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGN 1851
E E +ED+D N +ND +S + + ++S +++ + + SN ++ N
Sbjct: 625 EEEQEQQEEDDDNYNYENDNDS--EEYEFIDDSIIEQTEYYYLNSNNNNNNN 674
Score = 49 (22.3 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 1794 DSEVDVEGENSPTDEDED----ANNSQNDGESTAQNSQSD--ENSHDGESDSHSVKSNE 1846
++E + E+ +++ED N QN+ E Q EN H E + + +
Sbjct: 576 ENENQYQNEDEEEEQEEDDYHYENQHQNEDEEEEQEEDDYHYENQHQNEEEEQEQQEED 634
Score = 46 (21.3 bits), Expect = 5.8e-13, Sum P(3) = 5.8e-13
Identities = 20/108 (18%), Positives = 46/108 (42%)
Query: 1794 DSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNSR 1853
D + + E + + + NN++N +T N+ +S +G +S + +N+ N
Sbjct: 653 DDSIIEQTEYYYLNSNNNNNNNKNKYGNTINNNHYRNSSFNGPKNS--INNNKFKNKNIN 710
Query: 1854 CQPKTAYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWRTCSSES 1901
+ QS+ + + T+ + + Y P++Y ++ S S
Sbjct: 711 NNDQRNSQSNGIKKKVNTNNNNF-YPHYYNNPYPQNYYYDYQYFSDNS 757
Score = 46 (21.3 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 58/321 (18%), Positives = 109/321 (33%)
Query: 378 HSLMGEINLDHAFNVG--LVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAE-ES 434
+ L+ E ++D V ++P+ L Q++ Q+L L Q Q +Q E +
Sbjct: 513 NQLIQEYSVDITERVDNDIIPEELYSYQLSNPNDQQSLANLKLKQQQTILLNKQLEELKI 572
Query: 435 SKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDS---ENDGKPDENGSQRGS 491
++ EN + +E ++ + D + E+E D EN + +E ++
Sbjct: 573 NENENENQYQNEDEEEEQEEDDYHYENQHQNEDEEEEQEEDDYHYENQHQNEEEEQEQQE 632
Query: 492 KRSKEFKTQEKCVKGAGEDEN-GDRKASKDEQKIDGANSAEKSLEDKHGKKITN------ 544
+ + + + E E D + E +N+ + ++K+G I N
Sbjct: 633 EDDDNYNYEND--NDSEEYEFIDDSIIEQTEYYYLNSNNNNNNNKNKYGNTINNNHYRNS 690
Query: 545 SFEAVGEIVQNDTETTKENNQTDEV-PEENGLVGNPNKAEVGDLNECESCTDSFHMNEHS 603
SF + N+ K N D+ + NG+ K +V N ++F+ H
Sbjct: 691 SFNGPKNSINNNKFKNKNINNNDQRNSQSNGI-----KKKVNTNN------NNFY--PHY 737
Query: 604 DENDLGNNTKESQXXXXXXXXXXXXXXXXXXXXXXXPQGNNANQREIRDNSATLDKTEKE 663
N N NN N +N+ +
Sbjct: 738 YNNPYPQNYYYDYQYFSDNSYYNNNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 797
Query: 664 SVNNVESKDERPPSTANNPDG 684
+ NN + + NNP G
Sbjct: 798 NNNNNNNNNNYYQQHGNNPYG 818
Score = 46 (21.3 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 1796 EVDVEGENSPTDEDEDANNSQNDGESTAQN 1825
EV + G NS ++DE+ NN N+ + N
Sbjct: 194 EVFIGGLNSNNNKDENNNNILNNEDVNRLN 223
Score = 44 (20.5 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 23/121 (19%), Positives = 46/121 (38%)
Query: 1035 DEYEIDYVEQPVDEKKSRRELSQKMDSDRYRPDSDGDP----NRRPSSQESLHHNDSLDI 1090
D+Y Y Q +E++ + + + D+ Y D+D + + Q ++ +S +
Sbjct: 613 DDYH--YENQHQNEEEEQEQQEEDDDNYNYENDNDSEEYEFIDDSIIEQTEYYYLNSNNN 670
Query: 1091 KLRKKLKPGHRLQRNSKKRHS-----------KISTERSNSNSAPREKSSDAKQAANEEE 1139
K K G+ + N + S K + N+N +S+ K+ N
Sbjct: 671 NNNNKNKYGNTINNNHYRNSSFNGPKNSINNNKFKNKNINNNDQRNSQSNGIKKKVNTNN 730
Query: 1140 N 1140
N
Sbjct: 731 N 731
Score = 44 (20.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/112 (21%), Positives = 50/112 (44%)
Query: 1825 NSQSDENSHD--GESDSHSVKSNESHFGNSRCQPKTAYQSSSAQSEDGTSYKSISWD-AY 1881
N+ DEN+++ D + + + G + K+ ++ +++ + K + D A
Sbjct: 203 NNNKDENNNNILNNEDVNRLNGTQIIVGTPG-KIKSLIENLHLRTD---TLKMVIMDEAD 258
Query: 1882 SVIDEPESYDVSWRTCSSESAAREKNSGQRSRGSGDKAARKSASLPASQIAL 1933
++D S ++W + + KN+ S GSG + SA+ P+ I L
Sbjct: 259 KLLDASFSKTINWIYSAIGNGNSNKNNS--SSGSGIQMLAFSATYPSYLINL 308
Score = 43 (20.2 bits), Expect = 4.2e-53, Sum P(3) = 4.2e-53
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 1803 NSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNSRC 1854
N+ + + + NN+ N+ + Q N+ G + +S++ + + F C
Sbjct: 786 NNNNNNNNNNNNNNNNNNNNNNYYQQHGNNPYGYNIPNSIQYSSNQFYYCTC 837
Score = 43 (20.2 bits), Expect = 9.3e-13, Sum P(3) = 9.3e-13
Identities = 18/91 (19%), Positives = 39/91 (42%)
Query: 1034 LDEYEIDYVEQPVDEKKSRRELSQKMDSDRYRPDSDGDPNRRPSSQESLHHNDSLDIKLR 1093
+++ E Y+ + ++ + ++++ YR S P + S+++N K +
Sbjct: 657 IEQTEYYYLNSNNNNNNNKNKYGNTINNNHYRNSSFNGP------KNSINNN-----KFK 705
Query: 1094 KKLKPGHRLQRNSKKRHSKISTERSNSNSAP 1124
K + QRNS+ K +N+N P
Sbjct: 706 NK-NINNNDQRNSQSNGIKKKVNTNNNNFYP 735
Score = 43 (20.2 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 48/301 (15%), Positives = 101/301 (33%)
Query: 408 QRVQTLLAKPLDQAQ--EREDVEQTAEESSKVENTKPLRGAPSKEVTK-KGASKEGTKWN 464
Q+ LL K L++ + E E+ Q E + E + ++ + + +E ++
Sbjct: 557 QQQTILLNKQLEELKINENENENQYQNEDEEEEQEEDDYHYENQHQNEDEEEEQEEDDYH 616
Query: 465 LTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKI 524
+ EE + E + D+N + S+E++ + + E + + + K
Sbjct: 617 YENQHQNEEEEQEQQEEDDDNYNYENDNDSEEYEFIDDSIIEQTEYYYLNSNNNNNNNK- 675
Query: 525 DGANSAEKSLEDKHGKKITNSFEAVGEIVQNDTETTKENNQTDEVPEENGLVGNPNKAEV 584
N ++ + H + +SF + N+ K N D+ ++ G K
Sbjct: 676 ---NKYGNTINNNHYRN--SSFNGPKNSINNNKFKNKNINNNDQRNSQSN--GIKKKVNT 728
Query: 585 GDLNECESCTDS-FHMNEHSDENDLGNNTKESQXXXXXXXXXXXXXXXXXXXXXXXPQGN 643
+ N ++ + N + D +N+ + N
Sbjct: 729 NNNNFYPHYYNNPYPQNYYYDYQYFSDNSYYNNNYNNNNNNNNNNNNNNNNN-----NNN 783
Query: 644 NANQREIRDNSATLDKTEKESVNNVESKDERPPSTANNPDGTEWED--IPSDTIPNDETS 701
N N +N+ + + NN + P N P+ ++ T PN T
Sbjct: 784 NNNNNNNNNNNNNNNNNNNNNNNNYYQQHGNNPYGYNIPNSIQYSSNQFYYCTCPNCPTM 843
Query: 702 N 702
N
Sbjct: 844 N 844
Score = 42 (19.8 bits), Expect = 5.4e-53, Sum P(3) = 5.4e-53
Identities = 13/79 (16%), Positives = 31/79 (39%)
Query: 806 DNDGTGNRSITRSKQNSQSGDHTDLKDSNRPNANTDPSTGKNVKDIQSREIKSYASLSMF 865
DN N + N+ + ++ + ++N N N + + N + + +Y
Sbjct: 755 DNSYYNNNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYYQQHGN 814
Query: 866 SPCQTTLNKFDTQYNSSDY 884
+P + QY+S+ +
Sbjct: 815 NPYGYNIPN-SIQYSSNQF 832
Score = 41 (19.5 bits), Expect = 6.8e-53, Sum P(3) = 6.8e-53
Identities = 7/49 (14%), Positives = 22/49 (44%)
Query: 1803 NSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGN 1851
N+ + + + NN+ N+ + N+ + H +++ ++ + N
Sbjct: 782 NNNNNNNNNNNNNNNNNNNNNNNNNNYYQQHGNNPYGYNIPNSIQYSSN 830
Score = 41 (19.5 bits), Expect = 6.8e-53, Sum P(3) = 6.8e-53
Identities = 10/61 (16%), Positives = 26/61 (42%)
Query: 784 NKHNNVAALFRSEDQSNSVRIGDNDGTGNRSITRSKQNSQSGDHTDLKDSNRPNANTDPS 843
N +NN + + +N+ +N+ N + + N+ + ++ + N P P+
Sbjct: 764 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYYQQHGNNPYGYNIPN 823
Query: 844 T 844
+
Sbjct: 824 S 824
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 1100 HRLQRNSKKRHSKISTERSNSNSAPREKSSDAKQAA---NEEENITGGNDE 1147
HR+ R + +S N S +++ +Q NE EN N+E
Sbjct: 454 HRIGRTGRFGTYGVSITFINMKSIQQQQQQQQQQQQQIENENENENNNNNE 504
Score = 40 (19.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 1816 QNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNSRCQ 1855
Q + Q Q EN ++ E+++++ E F N Q
Sbjct: 478 QQQQQQQQQQQQQIENENENENNNNNEGFQEIDFINQLIQ 517
Score = 39 (18.8 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 6/41 (14%), Positives = 24/41 (58%)
Query: 1812 ANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNS 1852
++NS + N+ ++ N+++ +++++ +N ++ N+
Sbjct: 754 SDNSYYNNNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 794
Score = 39 (18.8 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 1033 NLDEYEIDYVEQPVDEKKSRRELSQKMDSDRYRPDSDGDPNRRPSSQESLHHND 1086
N +E E Y Q DE++ + E ++ D + + E+ H N+
Sbjct: 573 NENENENQY--QNEDEEEEQEEDDYHYENQHQNEDEEEEQEEDDYHYENQHQNE 624
Score = 39 (18.8 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 1807 DEDEDANNSQNDG 1819
+E+E+ NN+ N+G
Sbjct: 493 NENENENNNNNEG 505
Score = 37 (18.1 bits), Expect = 1.8e-52, Sum P(3) = 1.8e-52
Identities = 7/44 (15%), Positives = 18/44 (40%)
Query: 1105 NSKKRHSKISTERSNSNSAPREKSSDAKQAANEEENITGGNDEN 1148
N+ ++ + +N+N+ +++ N N N+ N
Sbjct: 764 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 807
>WB|WBGene00020284 [details] [associations]
symbol:mel-46 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006898
GO:GO:0040010 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K13131 GeneTree:ENSGT00530000062880 EMBL:CU457744 EMBL:EU051652
RefSeq:NP_001255908.1 RefSeq:NP_001255909.1 UniGene:Cel.7369
ProteinModelPortal:G5ED26 SMR:G5ED26 EnsemblMetazoa:T06A10.1a
EnsemblMetazoa:T06A10.1b GeneID:178469 KEGG:cel:CELE_T06A10.1
CTD:178469 WormBase:T06A10.1a WormBase:T06A10.1b OMA:SATYPRN
NextBio:901260 Uniprot:G5ED26
Length = 973
Score = 589 (212.4 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 180/537 (33%), Positives = 281/537 (52%)
Query: 13 DVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKS 72
DV SN FE+ ++ +K + + L+ + F + SP+Q A P L G D +VQ+KSGTGK+
Sbjct: 17 DVQSNCT--FESLMIGQKTLER-LKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKT 73
Query: 73 IVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE 132
+VF V A+ L Q +I+ PTREI+VQI + VR V ++GG+ +
Sbjct: 74 LVFSVLAVENLDSRS-SHIQKVIVTPTREISVQIKETVRKVAP--TGARTSVYVGGSAHK 130
Query: 133 ------RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIY 186
+ RP QIV+G+PGRI Q++KL +NM V F++DEADKL++ F +DI I
Sbjct: 131 LNLIDLKQTRP-QIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDEVFRDDINIII 189
Query: 187 SQLPPMKQMLVVSATYSH--DNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKN 244
+ LP ++Q+ V SATY DNL L ++ D L+R L G+KQ V + +C +
Sbjct: 190 NSLPQIRQVAVFSATYPRNLDNL--LSTFLRDAALVRFNADDVQLFGIKQYV--VAKC-S 244
Query: 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
P L +KL +L + Q ++F + + E I +L ++ ++S A QK R
Sbjct: 245 PML------EKLTHVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVSSAMSQKDR 298
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
++D + +V+ILV++DL ARGIDA NV+LV+N++ + TY HR+GRA R+G G
Sbjct: 299 QLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETYFHRIGRAARFGAHGA 358
Query: 365 VITIVSAESLVK-FHSLM--GEINLDHAFN-VGLVPDNLTGDQINWTQRVQTLLAKPLDQ 420
+T++ E +K F +L G++ + V +P +L +Q W + +
Sbjct: 359 AVTLLEDERALKGFTALAYRGKVTVKRVVEGVHELPGDLVKNQEFWKDLPYFIDFETPPT 418
Query: 421 AQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDG 480
D+ + + S VE+ K R A S VT +SK+ T+ D SD++N+
Sbjct: 419 GPN--DLNKVPDRQSAVESLKSEREA-SGIVTS--SSKKYTR----DEMMAMRSDTKNEQ 469
Query: 481 KPDENGSQRGSKRSKEFKTQEKC----VKGAGEDENGDRKASKDEQKIDGANSAEKS 533
+E S + S E +T EK VK ++ + KA+K K A KS
Sbjct: 470 SVEEI-SAKIENLSVETETDEKENVVEVKKTFKERLAELKAAKAAAKSQTEPEAPKS 525
Score = 64 (27.6 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 25/122 (20%), Positives = 48/122 (39%)
Query: 1799 VEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGE-SDSHSV-KSNESHFGNSRCQ- 1855
++ N ED NS+N ++ + S++ +N+ + + S S + K+ G + +
Sbjct: 618 IKSRNVQIGSQEDVGNSKNAEKTPLRGSEASKNAENSQISSSGDIGKAEILENGENPVKN 677
Query: 1856 -PKTAYQSSSAQSEDGTSYKSISWDAY-----SVIDEPESYDVSWRTCSSESAAREKNSG 1909
PKT + + SW Y + +EP D W C E R +
Sbjct: 678 PPKTIKYNRFEMKKIQKEVPKDSWIPYVKSKWNTTEEPWELD-QWLRCPFEERLRRQRKR 736
Query: 1910 QR 1911
++
Sbjct: 737 EK 738
Score = 50 (22.7 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 24/96 (25%), Positives = 42/96 (43%)
Query: 798 QSNSVRIGDNDGTGNRSITRSKQNSQSGDHTDLKDSNRPNANTDPSTGKNVKDIQSREIK 857
+S +V+IG + GN S++ + T L+ S + N + S + DI EI
Sbjct: 619 KSRNVQIGSQEDVGN---------SKNAEKTPLRGSEA-SKNAENSQISSSGDIGKAEIL 668
Query: 858 SYASLSMFSPCQTT-LNKFDTQYNSSDYQSDSK-PY 891
+ +P +T N+F+ + + DS PY
Sbjct: 669 ENGENPVKNPPKTIKYNRFEMKKIQKEVPKDSWIPY 704
Score = 44 (20.5 bits), Expect = 6.7e-52, Sum P(3) = 6.7e-52
Identities = 18/79 (22%), Positives = 34/79 (43%)
Query: 850 DIQSREIKSYASLSMFSPCQTTLNKFDTQYNSSDYQSDSKPYGDRTKRRSRPRKNKENTD 909
D+ EI + +P + ++ + Q S + +SK R S KN EN+
Sbjct: 597 DVGKAEILENVEKTEQNPPKIIKSR-NVQIGSQEDVGNSKNAEKTPLRGSEASKNAENSQ 655
Query: 910 ILNT--LGQDKTSAHGRTP 926
I ++ +G+ + +G P
Sbjct: 656 ISSSGDIGKAEILENGENP 674
Score = 43 (20.2 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 20/67 (29%), Positives = 27/67 (40%)
Query: 2287 YEDGP--AHESEGCS-YEHVLRAHPAYYPSLDVPRLKAVLERQREFMESYASQMSVYLNV 2343
++D P E EG E A P P L+ L A R F + S + + +
Sbjct: 910 FDDFPDVVEELEGSEGSEEASEAAPRA-PQLE--HLAAGYLRNMNFQAATQSYIDLMNSF 966
Query: 2344 ARNIAGN 2350
ARN GN
Sbjct: 967 ARNFGGN 973
Score = 41 (19.5 bits), Expect = 1.4e-51, Sum P(3) = 1.4e-51
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 1439 STNVNVSDDDGLDESYNMIKTPTPRKRNGASGESS 1473
S NV + + + S N KTP + E+S
Sbjct: 620 SRNVQIGSQEDVGNSKNAEKTPLRGSEASKNAENS 654
Score = 41 (19.5 bits), Expect = 1.4e-51, Sum P(3) = 1.4e-51
Identities = 20/93 (21%), Positives = 41/93 (44%)
Query: 654 SATLDKTEKESVNNVESKDERPPS---TANNPDGTEWEDIPS----DTIP--NDETSNDN 704
S++ D + E + NVE ++ PP + N G++ ED+ + + P E S +
Sbjct: 593 SSSGDVGKAEILENVEKTEQNPPKIIKSRNVQIGSQ-EDVGNSKNAEKTPLRGSEASKNA 651
Query: 705 KLTPVDFDYINDFVNQTPSETGDRPLVHGPNSV 737
+ + + D E G+ P+ + P ++
Sbjct: 652 ENSQISSS--GDIGKAEILENGENPVKNPPKTI 682
Score = 39 (18.8 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 516 KASKDEQKIDGANSAEKSLEDKHGKKITNSFEAVGEIVQNDTETTKENNQTDEVPEE 572
K DEQ D + L+D K+ T + + E + E + QTDE+ EE
Sbjct: 830 KRRLDEQ--DAYLQHQNKLDDGILKE-TEA-QTTAENPEKSMEMVEIECQTDEIQEE 882
Score = 38 (18.4 bits), Expect = 2.8e-51, Sum P(3) = 2.8e-51
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 496 EFKTQEKCVKGAGEDENGDRKASKDEQKIDGANSAEKSLED 536
E +T E + A ++E D + DE++++G+ +++ +D
Sbjct: 873 ECQTDEIQEELAEDEEYWDEEYW-DEEELEGSEGSQEIFDD 912
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 547 (197.6 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 157/517 (30%), Positives = 259/517 (50%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + I L E GFV +PIQ AA P +L G DA+ ++++GTGK+ F + LNKL
Sbjct: 29 SDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKL 88
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQ 139
L +PQ I++APTRE+A+Q+ ++++G ++K L V GG Q+ K
Sbjct: 89 -NLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147
Query: 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199
IVVG+PGR+K +I L++D FI+DEAD+++ GFV+D+TWI Q P Q ++ S
Sbjct: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207
Query: 200 ATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL 259
AT + + K +V+ L PE + G Q VA + E + ++ V++++ + +L
Sbjct: 208 AT-----MPPMVKEIVERFLRNPECVD--VAGSNQTVAKV-EQQYWVVKGVEKDEAMARL 259
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
L + ++F + E + + L F A L G Q R ++D K+G + IL
Sbjct: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHS 379
V TD+ ARG+D + V N +IP D +Y+HR+GR GR G +G I +V + +
Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379
Query: 380 L-------MGEINLDHAFNVGLVPDNLTGDQINWTQRVQTL--LAKPLDQAQEREDVEQT 430
+ M EI L H V G ++ + +L A +++ Q +++ T
Sbjct: 380 IERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDAT 439
Query: 431 AEES---SKVENTKPLR--GA-PSKEVTKKGASKEGTKWN-LTDGQSEEESDSENDGKPD 483
+ + + +PL GA P E ++ S+ + + DG + + E G+
Sbjct: 440 TLAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDG--DRPARREFGGRDQ 497
Query: 484 ENGSQRGSKRS--KEFKTQEKCVKGAGEDENGDRKAS 518
EN + ++ Q K + GA +E G K S
Sbjct: 498 ENHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGS 534
Score = 59 (25.8 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 27/92 (29%), Positives = 36/92 (39%)
Query: 897 RRSRPRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDERNGAYTGD 956
R+ R R+ KE ++ + S G GG R RR +G R R G G
Sbjct: 562 RKLRIRQ-KEVGAVVCDFDDFRESRGGARREGGPRREGGRRPEGNREG--GFRGGREGGR 618
Query: 957 KGGRNRGHSVNSRKDHSFAGETPRSKGGFDSY 988
+GGR RG ++ E RS SY
Sbjct: 619 EGGRGRGGEGRPFREGERRFERNRSGESSGSY 650
Score = 54 (24.1 bits), Expect = 1.9e-53, Sum P(2) = 1.9e-53
Identities = 18/71 (25%), Positives = 26/71 (36%)
Query: 892 GDRTKRRSRPRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDERNG 951
G R + RP N+E G + G GG P R + E +G
Sbjct: 593 GPRREGGRRPEGNREG----GFRGGREGGREGGRGRGGEGRPFREGERRFERNRSGESSG 648
Query: 952 AYTGDKGGRNR 962
+Y G++G R
Sbjct: 649 SYRGERGHSRR 659
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 547 (197.6 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 157/517 (30%), Positives = 259/517 (50%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + I L E GFV +PIQ AA P +L G DA+ ++++GTGK+ F + LNKL
Sbjct: 29 SDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKL 88
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQ 139
L +PQ I++APTRE+A+Q+ ++++G ++K L V GG Q+ K
Sbjct: 89 -NLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147
Query: 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199
IVVG+PGR+K +I L++D FI+DEAD+++ GFV+D+TWI Q P Q ++ S
Sbjct: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207
Query: 200 ATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL 259
AT + + K +V+ L PE + G Q VA + E + ++ V++++ + +L
Sbjct: 208 AT-----MPPMVKEIVERFLRNPECVD--VAGSNQTVAKV-EQQYWVVKGVEKDEAMARL 259
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
L + ++F + E + + L F A L G Q R ++D K+G + IL
Sbjct: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHS 379
V TD+ ARG+D + V N +IP D +Y+HR+GR GR G +G I +V + +
Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379
Query: 380 L-------MGEINLDHAFNVGLVPDNLTGDQINWTQRVQTL--LAKPLDQAQEREDVEQT 430
+ M EI L H V G ++ + +L A +++ Q +++ T
Sbjct: 380 IERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDAT 439
Query: 431 AEES---SKVENTKPLR--GA-PSKEVTKKGASKEGTKWN-LTDGQSEEESDSENDGKPD 483
+ + + +PL GA P E ++ S+ + + DG + + E G+
Sbjct: 440 TLAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDG--DRPARREFGGRDQ 497
Query: 484 ENGSQRGSKRS--KEFKTQEKCVKGAGEDENGDRKAS 518
EN + ++ Q K + GA +E G K S
Sbjct: 498 ENHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGS 534
Score = 59 (25.8 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 27/92 (29%), Positives = 36/92 (39%)
Query: 897 RRSRPRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDERNGAYTGD 956
R+ R R+ KE ++ + S G GG R RR +G R R G G
Sbjct: 562 RKLRIRQ-KEVGAVVCDFDDFRESRGGARREGGPRREGGRRPEGNREG--GFRGGREGGR 618
Query: 957 KGGRNRGHSVNSRKDHSFAGETPRSKGGFDSY 988
+GGR RG ++ E RS SY
Sbjct: 619 EGGRGRGGEGRPFREGERRFERNRSGESSGSY 650
Score = 54 (24.1 bits), Expect = 1.9e-53, Sum P(2) = 1.9e-53
Identities = 18/71 (25%), Positives = 26/71 (36%)
Query: 892 GDRTKRRSRPRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDERNG 951
G R + RP N+E G + G GG P R + E +G
Sbjct: 593 GPRREGGRRPEGNREG----GFRGGREGGREGGRGRGGEGRPFREGERRFERNRSGESSG 648
Query: 952 AYTGDKGGRNR 962
+Y G++G R
Sbjct: 649 SYRGERGHSRR 659
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 556 (200.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 136/383 (35%), Positives = 220/383 (57%)
Query: 3 HDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAI 62
+DI+ T++++ D L N+ L+ +G+ GF K S IQ +LNGYD I
Sbjct: 12 NDIE--GNTEEIVDTFDALGLNEKLL-----RGIYSYGFEKPSAIQQRGIKPILNGYDTI 64
Query: 63 VQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122
Q++SGTGK+ FV+++L +LI Q +ILAPTRE+A QI VV ++G ++K +
Sbjct: 65 GQAQSGTGKTATFVISSL-QLINYDYVACQALILAPTRELAQQIQKVVLALGDYLK-VKC 122
Query: 123 DYFIGGT----QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178
+GGT +++ K+ V +VVG+PGR+ MI ++L +D ++LFI+DEAD++++ GF
Sbjct: 123 HACVGGTVVREDIDKLKQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGF 182
Query: 179 VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLV 236
I ++ +L P Q+ + SAT + L ++M DP +L++ ++ T L G++Q
Sbjct: 183 KAQIYEVFKKLVPDIQVALFSATMPQEILELTTRFMRDPKTILVKKDELT--LEGIRQFY 240
Query: 237 ALIPECKNPSLRYVDEEKKLVQL--LSQT-PFNQCVIFSNYQLRPEVICENLANANFGAE 293
+ + EE KL L L +T Q +I+ N + + +++ + + N F
Sbjct: 241 VAVEK----------EEWKLDTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVS 290
Query: 294 YLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRM 353
+ G DQK R + F+ G R+LVTTDL ARGID V LVIN ++P TY+HR+
Sbjct: 291 CMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRI 350
Query: 354 GRAGRYGTRGLVITIVSAESLVK 376
GR+GR+G +G+ I V+ + K
Sbjct: 351 GRSGRFGRKGVAINFVTNDDKEK 373
Score = 38 (18.4 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 1398 RGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMEL 1435
R GR N V ++DK + + + I EM L
Sbjct: 355 RFGRKGVAINFVTNDDKEKDKLKKIESYYSTQIEEMPL 392
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 556 (200.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 136/383 (35%), Positives = 220/383 (57%)
Query: 3 HDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAI 62
+DI+ T++++ D L N+ L+ +G+ GF K S IQ +LNGYD I
Sbjct: 12 NDIE--GNTEEIVDTFDALGLNEKLL-----RGIYSYGFEKPSAIQQRGIKPILNGYDTI 64
Query: 63 VQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHV 122
Q++SGTGK+ FV+++L +LI Q +ILAPTRE+A QI VV ++G ++K +
Sbjct: 65 GQAQSGTGKTATFVISSL-QLINYDYVACQALILAPTRELAQQIQKVVLALGDYLK-VKC 122
Query: 123 DYFIGGT----QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178
+GGT +++ K+ V +VVG+PGR+ MI ++L +D ++LFI+DEAD++++ GF
Sbjct: 123 HACVGGTVVREDIDKLKQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGF 182
Query: 179 VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLV 236
I ++ +L P Q+ + SAT + L ++M DP +L++ ++ T L G++Q
Sbjct: 183 KAQIYEVFKKLVPDIQVALFSATMPQEILELTTRFMRDPKTILVKKDELT--LEGIRQFY 240
Query: 237 ALIPECKNPSLRYVDEEKKLVQL--LSQT-PFNQCVIFSNYQLRPEVICENLANANFGAE 293
+ + EE KL L L +T Q +I+ N + + +++ + + N F
Sbjct: 241 VAVEK----------EEWKLDTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVS 290
Query: 294 YLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRM 353
+ G DQK R + F+ G R+LVTTDL ARGID V LVIN ++P TY+HR+
Sbjct: 291 CMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRI 350
Query: 354 GRAGRYGTRGLVITIVSAESLVK 376
GR+GR+G +G+ I V+ + K
Sbjct: 351 GRSGRFGRKGVAINFVTNDDKEK 373
Score = 38 (18.4 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 1398 RGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMEL 1435
R GR N V ++DK + + + I EM L
Sbjct: 355 RFGRKGVAINFVTNDDKEKDKLKKIESYYSTQIEEMPL 392
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 559 (201.8 bits), Expect = 1.8e-52, P = 1.8e-52
Identities = 138/395 (34%), Positives = 222/395 (56%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN D ++ ++ ++ + +G+ GF + S IQ A V+ G+D I Q++SGTGK+
Sbjct: 16 SNYDETVDSFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTA 75
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133
F ++ L K I V+Q Q +ILAPTRE+A QI VV ++G + N+ IGGT V
Sbjct: 76 TFSISVLQK-IDTNVKQCQALILAPTRELAQQIQKVVVAIGDFM-NIECHACIGGTSVRD 133
Query: 134 PKRPVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
+ +Q +VVG+PGR+ MI+ ++L D +++F++DEAD++++ GF E I I+ L
Sbjct: 134 DMKALQDGPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLL 193
Query: 190 PPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSL 247
P Q++++SAT D L K+M DP +L++ ++ T L G+KQ + +
Sbjct: 194 PQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKDELT--LEGIKQFYIAVEK------ 245
Query: 248 RYVDEEKKLVQL--LSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
EE KL L L +T Q VIF N + + + + + L +F + G DQ R
Sbjct: 246 ----EEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQR 301
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
+ F+ G R+L+ TDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 302 DLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGV 361
Query: 365 VITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
I V+A+ + +M EI ++ + +P N+
Sbjct: 362 AINFVTADDV----RMMREIEQFYSTQIEEMPMNV 392
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 558 (201.5 bits), Expect = 2.3e-52, P = 2.3e-52
Identities = 132/368 (35%), Positives = 216/368 (58%)
Query: 14 VLSNID-VLFE-NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGK 71
+ +N D V+++ +D+ +++ + +G+ GF + S IQ A ++ G+D + Q++SGTGK
Sbjct: 13 IQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGK 72
Query: 72 SIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ- 130
+ F +AAL + I V+ PQ ++LAPTRE+A+QI VV ++ H+ ++ V IGGT
Sbjct: 73 TGTFSIAALQR-IDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSF 130
Query: 131 VERPK--RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ 188
VE + R QIVVG+PGR+ I+ + D +++FI+DEAD+++++GF E I I++
Sbjct: 131 VEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 190
Query: 189 LPPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPS 246
LPP Q++++SAT +D L K+M +P +L++ ++ T L G+KQ + E
Sbjct: 191 LPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT--LEGIKQFYVNVEE---EE 245
Query: 247 LRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLA 306
+Y + L L Q VIF N + + E + L N F + Q+ R
Sbjct: 246 YKY----ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDT 301
Query: 307 SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVI 366
+ F+ G RIL++TDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I
Sbjct: 302 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI 361
Query: 367 TIVSAESL 374
V+ E +
Sbjct: 362 NFVTNEDV 369
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 558 (201.5 bits), Expect = 2.3e-52, P = 2.3e-52
Identities = 132/368 (35%), Positives = 216/368 (58%)
Query: 14 VLSNID-VLFE-NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGK 71
+ +N D V+++ +D+ +++ + +G+ GF + S IQ A ++ G+D + Q++SGTGK
Sbjct: 13 IQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGK 72
Query: 72 SIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ- 130
+ F +AAL + I V+ PQ ++LAPTRE+A+QI VV ++ H+ ++ V IGGT
Sbjct: 73 TGTFSIAALQR-IDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSF 130
Query: 131 VERPK--RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ 188
VE + R QIVVG+PGR+ I+ + D +++FI+DEAD+++++GF E I I++
Sbjct: 131 VEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 190
Query: 189 LPPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPS 246
LPP Q++++SAT +D L K+M +P +L++ ++ T L G+KQ + E
Sbjct: 191 LPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT--LEGIKQFYVNVEE---EE 245
Query: 247 LRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLA 306
+Y + L L Q VIF N + + E + L N F + Q+ R
Sbjct: 246 YKY----ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDT 301
Query: 307 SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVI 366
+ F+ G RIL++TDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I
Sbjct: 302 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI 361
Query: 367 TIVSAESL 374
V+ E +
Sbjct: 362 NFVTNEDV 369
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 558 (201.5 bits), Expect = 2.3e-52, P = 2.3e-52
Identities = 124/364 (34%), Positives = 207/364 (56%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 29 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFC 88
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
V+ L + + + V++ Q +ILAPTRE+A QI V+ ++G ++ N+ IGGT V R
Sbjct: 89 VSVL-QCLDIQVRETQALILAPTRELAGQIQKVLLALGDYM-NVQCHACIGGTNVGEDIR 146
Query: 137 PVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 147 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 206
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
Q+ ++SAT H+ L K+M DP+ L++ ++ T L G+KQ + + ++
Sbjct: 207 TQVCLISATLPHEILEMTNKFMTDPIRILVKRDELT--LEGIKQFFVAV---EREEWKF- 260
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 261 ---DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 317
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
F+ G R+L++TD+ ARG+D + V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 318 FRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 377
Query: 371 AESL 374
+ +
Sbjct: 378 NDDI 381
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 556 (200.8 bits), Expect = 3.8e-52, P = 3.8e-52
Identities = 129/404 (31%), Positives = 228/404 (56%)
Query: 2 AHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDA 61
A D + +K+V + FE D+ +++ + +G+ G+ S +Q A + G D
Sbjct: 9 ADDKMEFNTSKEV--TVAPTFE-DMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDT 65
Query: 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121
I Q++SGTGK+ F ++AL ++I V++ Q ++L+PTRE+A QI V+ ++G ++ N+
Sbjct: 66 IAQAQSGTGKTATFSISAL-QVIDTVVRETQALVLSPTRELATQIQSVIMALGDYM-NVQ 123
Query: 122 VDYFIGGTQVERPKRPVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
IGGT + R + +V G+PGR+ MI+ ++L +++ ++DEAD+L+N G
Sbjct: 124 CHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRG 183
Query: 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQL 235
F E I +Y LPP Q++VVSAT +D L K+M DP+ L++ ++ T L G+KQ
Sbjct: 184 FREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELT--LEGIKQY 241
Query: 236 VALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYL 295
+ + ++ L L Q VIF N + + + + + + ANF +
Sbjct: 242 FIAV---EKEEWKF----DTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSM 294
Query: 296 SGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGR 355
G QK R + + F++G R+L++TD+ ARGID V LVIN ++P + Y+HR+GR
Sbjct: 295 HGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGR 354
Query: 356 AGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
+GR+G +G+ I V+++ + ++ +I L ++ + +P N+
Sbjct: 355 SGRFGRKGVAINFVTSDDV----RILRDIELYYSTQIDEMPMNV 394
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 556 (200.8 bits), Expect = 3.8e-52, P = 3.8e-52
Identities = 123/364 (33%), Positives = 207/364 (56%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 35 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 94
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
++ L + + + V++ Q +ILAPTRE+AVQI + ++G ++ N+ IGGT V R
Sbjct: 95 ISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIR 152
Query: 137 PVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 153 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 212
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
Q++++SAT H+ L K+M DP+ L++ ++ T L G+KQ + + ++
Sbjct: 213 TQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT--LEGIKQFFVAV---EREEWKF- 266
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 267 ---DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 323
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
F+ G R+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 324 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 383
Query: 371 AESL 374
+ +
Sbjct: 384 NDDI 387
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 556 (200.8 bits), Expect = 3.8e-52, P = 3.8e-52
Identities = 123/364 (33%), Positives = 207/364 (56%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 34 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 93
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
++ L + + + V++ Q +ILAPTRE+AVQI + ++G ++ N+ IGGT V R
Sbjct: 94 ISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIR 151
Query: 137 PVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 152 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 211
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
Q++++SAT H+ L K+M DP+ L++ ++ T L G+KQ + + ++
Sbjct: 212 TQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT--LEGIKQFFVAV---EREEWKF- 265
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 266 ---DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
F+ G R+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382
Query: 371 AESL 374
+ +
Sbjct: 383 NDDI 386
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 556 (200.8 bits), Expect = 3.8e-52, P = 3.8e-52
Identities = 123/364 (33%), Positives = 207/364 (56%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 34 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 93
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
++ L + + + V++ Q +ILAPTRE+AVQI + ++G ++ N+ IGGT V R
Sbjct: 94 ISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIR 151
Query: 137 PVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 152 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 211
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
Q++++SAT H+ L K+M DP+ L++ ++ T L G+KQ + + ++
Sbjct: 212 TQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT--LEGIKQFFVAV---EREEWKF- 265
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 266 ---DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
F+ G R+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382
Query: 371 AESL 374
+ +
Sbjct: 383 NDDI 386
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 556 (200.8 bits), Expect = 3.8e-52, P = 3.8e-52
Identities = 123/364 (33%), Positives = 207/364 (56%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 34 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 93
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
++ L + + + V++ Q +ILAPTRE+AVQI + ++G ++ N+ IGGT V R
Sbjct: 94 ISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIR 151
Query: 137 PVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 152 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 211
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
Q++++SAT H+ L K+M DP+ L++ ++ T L G+KQ + + ++
Sbjct: 212 TQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT--LEGIKQFFVAV---EREEWKF- 265
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 266 ---DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
F+ G R+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382
Query: 371 AESL 374
+ +
Sbjct: 383 NDDI 386
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 556 (200.8 bits), Expect = 3.8e-52, P = 3.8e-52
Identities = 123/364 (33%), Positives = 207/364 (56%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 34 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 93
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
++ L + + + V++ Q +ILAPTRE+AVQI + ++G ++ N+ IGGT V R
Sbjct: 94 ISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIR 151
Query: 137 PVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 152 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 211
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
Q++++SAT H+ L K+M DP+ L++ ++ T L G+KQ + + ++
Sbjct: 212 TQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT--LEGIKQFFVAV---EREEWKF- 265
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 266 ---DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
F+ G R+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382
Query: 371 AESL 374
+ +
Sbjct: 383 NDDI 386
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 556 (200.8 bits), Expect = 3.8e-52, P = 3.8e-52
Identities = 123/364 (33%), Positives = 207/364 (56%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 34 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 93
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
++ L + + + V++ Q +ILAPTRE+AVQI + ++G ++ N+ IGGT V R
Sbjct: 94 ISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIR 151
Query: 137 PVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 152 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 211
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
Q++++SAT H+ L K+M DP+ L++ ++ T L G+KQ + + ++
Sbjct: 212 TQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT--LEGIKQFFVAV---EREEWKF- 265
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 266 ---DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
F+ G R+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382
Query: 371 AESL 374
+ +
Sbjct: 383 NDDI 386
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 547 (197.6 bits), Expect = 3.4e-51, P = 3.4e-51
Identities = 124/351 (35%), Positives = 199/351 (56%)
Query: 30 KP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV 88
KP + +G+ GF S IQ A +++G D I Q++SGTGK+ F + L ++I
Sbjct: 34 KPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGML-EVIDTKS 92
Query: 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQV----ERPKRPVQIVVGS 144
++ Q +IL+PTRE+A+QI +VV+ +G ++ N+H IGG V ++ ++ QIV G+
Sbjct: 93 KECQALILSPTRELAIQIQNVVKHLGDYM-NIHTHACIGGKNVGEDVKKLQQGQQIVSGT 151
Query: 145 PGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204
PGR+ +IK + L ++++ I+DEAD+L GF E I IY LPP Q++VVSAT
Sbjct: 152 PGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVVVVSATLPR 211
Query: 205 DNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTP 264
+ L K+ DP+ I + L G+KQ +C+ ++ L L
Sbjct: 212 EVLEMTSKFTTDPVKILVKRDEISLSGIKQYYV---QCEREDWKF----DTLCDLYDNLT 264
Query: 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324
Q VIF N +L+ + + + NF + G Q R + ++ F+RG R+L++TD+
Sbjct: 265 ITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTDV 324
Query: 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV 375
ARGID V LVIN ++P D Y+HR+GR+GR+G +G I +++ + +V
Sbjct: 325 WARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVV 375
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 547 (197.6 bits), Expect = 3.4e-51, P = 3.4e-51
Identities = 121/357 (33%), Positives = 203/357 (56%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
N + +++ + +G+ GF K S IQ + ++ G D I Q++SGTGK+ F ++ L L
Sbjct: 29 NAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSL 88
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
+++ Q + L+PTRE+AVQI V+ ++G + N+ IGGT + R +
Sbjct: 89 -DTTLRETQVLCLSPTRELAVQIQKVILALG-DMMNVQCHVCIGGTNLGEDIRKLDYGQH 146
Query: 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199
IV G+PGR+ MIK + L ++++ ++DEAD+++N GF E I +Y LPP Q++++S
Sbjct: 147 IVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 206
Query: 200 ATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257
AT H+ L K+M DP+ L++ ++ T L G+KQ + + ++ L
Sbjct: 207 ATLPHEILEMTSKFMTDPIRILVKRDELT--LEGIKQFFVAV---EREEWKF----DTLC 257
Query: 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR 317
L Q VIF N + + + + E + ANF + G QK R + F+ G+ R
Sbjct: 258 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSR 317
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
+L+TTD+ ARGID V LVIN ++P++ Y+HR+GR+GR+G +G+ I V ++ +
Sbjct: 318 VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI 374
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 547 (197.6 bits), Expect = 3.4e-51, P = 3.4e-51
Identities = 128/367 (34%), Positives = 206/367 (56%)
Query: 17 NIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
N+ F+ L E +R G+ GF K S IQ A P +L D I Q++SGTGK+ F
Sbjct: 23 NVIPTFDKMGLREDLLR-GIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFS 81
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
++ L L V++ Q +IL+PTRE+AVQI VV ++G ++ N+ IGGT + R
Sbjct: 82 ISVLQSL-DTQVRETQALILSPTRELAVQIQKVVLALGDYM-NVQCHACIGGTNLGEDIR 139
Query: 137 PVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L +++L ++DEAD+++N GF E + IY LPP
Sbjct: 140 KLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPG 199
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
Q++++SAT H+ L K+M DP+ L++ ++ T L G+KQ +
Sbjct: 200 AQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELT--LEGIKQFFVAVDR--------- 248
Query: 251 DEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307
EE K L+ L Q V+F N + + + + + + ANF + G +QK R
Sbjct: 249 -EEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEV 307
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
+ F+ G R+L++TD+ ARG+D V LVIN ++P++ Y+HR+GR+GR+G +G+ I
Sbjct: 308 MKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN 367
Query: 368 IVSAESL 374
V + +
Sbjct: 368 FVKQDDV 374
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 539 (194.8 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 131/367 (35%), Positives = 213/367 (58%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + +N D+ +++ + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVE 132
F ++ L +L ++ ++ Q ++LAPTRE+A QI V+ ++G ++ H IGGT V
Sbjct: 86 TFAISILQQL-EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHA--CIGGTNVR 142
Query: 133 RPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187
+ +Q IVVG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Query: 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNP 245
+L Q++++SAT D L +K+M DP+ L++ E+ T L G+KQ + E +
Sbjct: 203 KLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELT--LEGIKQFYINV-EREEW 259
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L D L + L+ T Q VIF N + + + + E + +F L G DQK R
Sbjct: 260 KL---DTLCDLYETLTIT---QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERD 313
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ F+ G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 314 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 373
Query: 366 ITIVSAE 372
I V+ E
Sbjct: 374 INFVTEE 380
Score = 40 (19.1 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N + EM + NV+
Sbjct: 363 RGGRFGRKGVAINFVTEEDKRILRDIETFYNTT--VEEMPM-NVA 404
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 539 (194.8 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 131/367 (35%), Positives = 213/367 (58%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + +N D+ +++ + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVE 132
F ++ L +L ++ ++ Q ++LAPTRE+A QI V+ ++G ++ H IGGT V
Sbjct: 86 TFAISILQQL-EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHA--CIGGTNVR 142
Query: 133 RPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187
+ +Q IVVG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Query: 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNP 245
+L Q++++SAT D L +K+M DP+ L++ E+ T L G+KQ + E +
Sbjct: 203 KLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELT--LEGIKQFYINV-EREEW 259
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L D L + L+ T Q VIF N + + + + E + +F L G DQK R
Sbjct: 260 KL---DTLCDLYETLTIT---QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERD 313
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ F+ G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 314 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 373
Query: 366 ITIVSAE 372
I V+ E
Sbjct: 374 INFVTEE 380
Score = 40 (19.1 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N + EM + NV+
Sbjct: 363 RGGRFGRKGVAINFVTEEDKRILRDIETFYNTT--VEEMPM-NVA 404
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 539 (194.8 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 131/367 (35%), Positives = 213/367 (58%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + +N D+ +++ + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVE 132
F ++ L +L ++ ++ Q ++LAPTRE+A QI V+ ++G ++ H IGGT V
Sbjct: 86 TFAISILQQL-EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHA--CIGGTNVR 142
Query: 133 RPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187
+ +Q IVVG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Query: 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNP 245
+L Q++++SAT D L +K+M DP+ L++ E+ T L G+KQ + E +
Sbjct: 203 KLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELT--LEGIKQFYINV-EREEW 259
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L D L + L+ T Q VIF N + + + + E + +F L G DQK R
Sbjct: 260 KL---DTLCDLYETLTIT---QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERD 313
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ F+ G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 314 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 373
Query: 366 ITIVSAE 372
I V+ E
Sbjct: 374 INFVTEE 380
Score = 40 (19.1 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N + EM + NV+
Sbjct: 363 RGGRFGRKGVAINFVTEEDKRILRDIETFYNTT--VEEMPM-NVA 404
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 539 (194.8 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 131/367 (35%), Positives = 213/367 (58%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + +N D+ +++ + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVE 132
F ++ L +L ++ ++ Q ++LAPTRE+A QI V+ ++G ++ H IGGT V
Sbjct: 86 TFAISILQQL-EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHA--CIGGTNVR 142
Query: 133 RPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187
+ +Q IVVG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Query: 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNP 245
+L Q++++SAT D L +K+M DP+ L++ E+ T L G+KQ + E +
Sbjct: 203 KLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELT--LEGIKQFYINV-EREEW 259
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L D L + L+ T Q VIF N + + + + E + +F L G DQK R
Sbjct: 260 KL---DTLCDLYETLTIT---QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERD 313
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ F+ G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 314 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 373
Query: 366 ITIVSAE 372
I V+ E
Sbjct: 374 INFVTEE 380
Score = 40 (19.1 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N + EM + NV+
Sbjct: 363 RGGRFGRKGVAINFVTEEDKRILRDIETFYNTT--VEEMPM-NVA 404
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 539 (194.8 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 131/367 (35%), Positives = 213/367 (58%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + +N D+ +++ + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVE 132
F ++ L +L ++ ++ Q ++LAPTRE+A QI V+ ++G ++ H IGGT V
Sbjct: 86 TFAISILQQL-EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHA--CIGGTNVR 142
Query: 133 RPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187
+ +Q IVVG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Query: 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNP 245
+L Q++++SAT D L +K+M DP+ L++ E+ T L G+KQ + E +
Sbjct: 203 KLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELT--LEGIKQFYINV-EREEW 259
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L D L + L+ T Q VIF N + + + + E + +F L G DQK R
Sbjct: 260 KL---DTLCDLYETLTIT---QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERD 313
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ F+ G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 314 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 373
Query: 366 ITIVSAE 372
I V+ E
Sbjct: 374 INFVTEE 380
Score = 40 (19.1 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N + EM + NV+
Sbjct: 363 RGGRFGRKGVAINFVTEEDKRILRDIETFYNTT--VEEMPM-NVA 404
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 539 (194.8 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 131/367 (35%), Positives = 213/367 (58%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + +N D+ +++ + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVE 132
F ++ L +L ++ ++ Q ++LAPTRE+A QI V+ ++G ++ H IGGT V
Sbjct: 86 TFAISILQQL-EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHA--CIGGTNVR 142
Query: 133 RPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187
+ +Q IVVG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Query: 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNP 245
+L Q++++SAT D L +K+M DP+ L++ E+ T L G+KQ + E +
Sbjct: 203 KLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELT--LEGIKQFYINV-EREEW 259
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L D L + L+ T Q VIF N + + + + E + +F L G DQK R
Sbjct: 260 KL---DTLCDLYETLTIT---QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERD 313
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ F+ G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 314 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 373
Query: 366 ITIVSAE 372
I V+ E
Sbjct: 374 INFVTEE 380
Score = 40 (19.1 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N + EM + NV+
Sbjct: 363 RGGRFGRKGVAINFVTEEDKRILRDIETFYNTT--VEEMPM-NVA 404
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 539 (194.8 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 131/367 (35%), Positives = 213/367 (58%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + +N D+ +++ + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 27 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 86
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVE 132
F ++ L +L ++ ++ Q ++LAPTRE+A QI V+ ++G ++ H IGGT V
Sbjct: 87 TFAISILQQL-EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHA--CIGGTNVR 143
Query: 133 RPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187
+ +Q IVVG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+
Sbjct: 144 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 203
Query: 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNP 245
+L Q++++SAT D L +K+M DP+ L++ E+ T L G+KQ + E +
Sbjct: 204 KLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELT--LEGIKQFYINV-EREEW 260
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L D L + L+ T Q VIF N + + + + E + +F L G DQK R
Sbjct: 261 KL---DTLCDLYETLTIT---QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERD 314
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ F+ G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 315 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 374
Query: 366 ITIVSAE 372
I V+ E
Sbjct: 375 INFVTEE 381
Score = 40 (19.1 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N + EM + NV+
Sbjct: 364 RGGRFGRKGVAINFVTEEDKRILRDIETFYNTT--VEEMPM-NVA 405
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 534 (193.0 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 127/357 (35%), Positives = 209/357 (58%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+ F ++ L +
Sbjct: 35 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ- 93
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVERPKRPVQ--- 139
I+L ++ Q ++LAPTRE+A QI VV ++G ++ + H IGGT V + +Q
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA--CIGGTNVRAEVQKLQMEA 151
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
I+VG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L Q+++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211
Query: 198 VSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
+SAT D L +K+M DP+ L++ E+ T L G++Q + E + L D
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELT--LEGIRQFYINV-EREEWKL---DTLCD 265
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L + L+ T Q VIF N + + + + E + +F + G DQK R + F+ G
Sbjct: 266 LYETLTIT---QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I +V+ E
Sbjct: 323 SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Score = 45 (20.9 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N I EM L NV+
Sbjct: 362 RGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS--IEEMPL-NVA 403
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 534 (193.0 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 127/357 (35%), Positives = 209/357 (58%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+ F ++ L +
Sbjct: 35 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ- 93
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVERPKRPVQ--- 139
I+L ++ Q ++LAPTRE+A QI VV ++G ++ + H IGGT V + +Q
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA--CIGGTNVRAEVQKLQMEA 151
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
I+VG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L Q+++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211
Query: 198 VSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
+SAT D L +K+M DP+ L++ E+ T L G++Q + E + L D
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELT--LEGIRQFYINV-EREEWKL---DTLCD 265
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L + L+ T Q VIF N + + + + E + +F + G DQK R + F+ G
Sbjct: 266 LYETLTIT---QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I +V+ E
Sbjct: 323 SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Score = 45 (20.9 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N I EM L NV+
Sbjct: 362 RGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS--IEEMPL-NVA 403
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 534 (193.0 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 127/357 (35%), Positives = 209/357 (58%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+ F ++ L +
Sbjct: 35 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ- 93
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVERPKRPVQ--- 139
I+L ++ Q ++LAPTRE+A QI VV ++G ++ + H IGGT V + +Q
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA--CIGGTNVRAEVQKLQMEA 151
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
I+VG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L Q+++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211
Query: 198 VSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
+SAT D L +K+M DP+ L++ E+ T L G++Q + E + L D
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELT--LEGIRQFYINV-EREEWKL---DTLCD 265
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L + L+ T Q VIF N + + + + E + +F + G DQK R + F+ G
Sbjct: 266 LYETLTIT---QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I +V+ E
Sbjct: 323 SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Score = 45 (20.9 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N I EM L NV+
Sbjct: 362 RGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS--IEEMPL-NVA 403
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 534 (193.0 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 127/357 (35%), Positives = 209/357 (58%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+ F ++ L +
Sbjct: 35 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ- 93
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVERPKRPVQ--- 139
I+L ++ Q ++LAPTRE+A QI VV ++G ++ + H IGGT V + +Q
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA--CIGGTNVRAEVQKLQMEA 151
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
I+VG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L Q+++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211
Query: 198 VSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
+SAT D L +K+M DP+ L++ E+ T L G++Q + E + L D
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELT--LEGIRQFYINV-EREEWKL---DTLCD 265
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L + L+ T Q VIF N + + + + E + +F + G DQK R + F+ G
Sbjct: 266 LYETLTIT---QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I +V+ E
Sbjct: 323 SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Score = 45 (20.9 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N I EM L NV+
Sbjct: 362 RGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS--IEEMPL-NVA 403
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 534 (193.0 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 127/357 (35%), Positives = 209/357 (58%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+ F ++ L +
Sbjct: 35 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ- 93
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVERPKRPVQ--- 139
I+L ++ Q ++LAPTRE+A QI VV ++G ++ + H IGGT V + +Q
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA--CIGGTNVRAEVQKLQMEA 151
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
I+VG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L Q+++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211
Query: 198 VSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
+SAT D L +K+M DP+ L++ E+ T L G++Q + E + L D
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELT--LEGIRQFYINV-EREEWKL---DTLCD 265
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L + L+ T Q VIF N + + + + E + +F + G DQK R + F+ G
Sbjct: 266 LYETLTIT---QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I +V+ E
Sbjct: 323 SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Score = 45 (20.9 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N I EM L NV+
Sbjct: 362 RGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS--IEEMPL-NVA 403
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 534 (193.0 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 127/357 (35%), Positives = 209/357 (58%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+ F ++ L +
Sbjct: 35 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ- 93
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVERPKRPVQ--- 139
I+L ++ Q ++LAPTRE+A QI VV ++G ++ + H IGGT V + +Q
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA--CIGGTNVRAEVQKLQMEA 151
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
I+VG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L Q+++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211
Query: 198 VSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
+SAT D L +K+M DP+ L++ E+ T L G++Q + E + L D
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELT--LEGIRQFYINV-EREEWKL---DTLCD 265
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L + L+ T Q VIF N + + + + E + +F + G DQK R + F+ G
Sbjct: 266 LYETLTIT---QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I +V+ E
Sbjct: 323 SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Score = 45 (20.9 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N I EM L NV+
Sbjct: 362 RGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS--IEEMPL-NVA 403
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 534 (193.0 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 127/357 (35%), Positives = 209/357 (58%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+ F ++ L +
Sbjct: 35 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ- 93
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVERPKRPVQ--- 139
I+L ++ Q ++LAPTRE+A QI VV ++G ++ + H IGGT V + +Q
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA--CIGGTNVRAEVQKLQMEA 151
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
I+VG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L Q+++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211
Query: 198 VSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
+SAT D L +K+M DP+ L++ E+ T L G++Q + E + L D
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELT--LEGIRQFYINV-EREEWKL---DTLCD 265
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L + L+ T Q VIF N + + + + E + +F + G DQK R + F+ G
Sbjct: 266 LYETLTIT---QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 322
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I +V+ E
Sbjct: 323 SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Score = 45 (20.9 bits), Expect = 4.0e-51, Sum P(2) = 4.0e-51
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N I EM L NV+
Sbjct: 362 RGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS--IEEMPL-NVA 403
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 546 (197.3 bits), Expect = 4.3e-51, P = 4.3e-51
Identities = 127/353 (35%), Positives = 206/353 (58%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + + + +G+ GF K S IQ A + G D I Q++SGTGK+ F +A L +
Sbjct: 33 DDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ- 91
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
I +++ Q +ILAPTRE+A QI VV ++G ++K +H IGGT V R ++
Sbjct: 92 IDTSIRECQALILAPTRELATQIQRVVMALGEYMK-VHSHACIGGTNVREDARILESGCH 150
Query: 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199
+VVG+PGR+ MI K L ++LF++DEAD++++ GF + I ++ LPP Q++++S
Sbjct: 151 VVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLS 210
Query: 200 ATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257
AT D L + +M DP +L++ E+ T L G+KQ + + +N L + + L
Sbjct: 211 ATMPPDVLEVSRCFMRDPVSILVKKEELT--LEGIKQFYVNVKQ-ENWKLGTLCD---LY 264
Query: 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR 317
LS T Q VIF N + + + + + ++ NF + G +Q+ R + F+ G R
Sbjct: 265 DTLSIT---QSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSR 321
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I ++
Sbjct: 322 VLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFIT 374
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 546 (197.3 bits), Expect = 4.3e-51, P = 4.3e-51
Identities = 123/356 (34%), Positives = 202/356 (56%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ + + +G+ GF K S IQ A P +L D I Q++SGTGK+ F ++ L L
Sbjct: 33 LREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSL-DTQ 91
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVG 143
V++ Q +IL+PTRE+AVQI VV ++G ++ N+ IGGT + R + +V G
Sbjct: 92 VRETQALILSPTRELAVQIQKVVLALGDYM-NVQCHACIGGTNLGEDIRKLDYGQHVVSG 150
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
+PGR+ MI+ + L +++L ++DEAD+++N GF E + IY LPP Q++++SAT
Sbjct: 151 TPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLP 210
Query: 204 HDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK---LVQ 258
H+ L K+M DP+ L++ ++ T L G+KQ + EE K L+
Sbjct: 211 HEILEMTSKFMTDPIRILVKRDELT--LEGIKQFFVAVDR----------EEWKFDTLID 258
Query: 259 LLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRI 318
L Q V+F N + + + + + + ANF + G +QK R + F+ G R+
Sbjct: 259 LYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRV 318
Query: 319 LVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
L++TD+ ARG+D V LVIN ++P++ Y+HR+GR+GR+G +G+ I V + +
Sbjct: 319 LISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDV 374
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 545 (196.9 bits), Expect = 5.6e-51, P = 5.6e-51
Identities = 133/389 (34%), Positives = 216/389 (55%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
FE ++ +++ + +G+ G+ S +Q A + G D I Q++SGTGK+ F + L
Sbjct: 23 FE-EMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ 81
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-- 139
I L V+ Q +IL+PTRE+AVQI +VV ++G H+ N+ IGGT V + +
Sbjct: 82 S-IDLSVRDTQALILSPTRELAVQIQNVVLALGDHM-NVQCHACIGGTSVGNDIKKLDYG 139
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
+V G+PGR+ MI+ + L +V++ I+DEAD+L+N GF E I IY LPP Q++V
Sbjct: 140 QHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVV 199
Query: 198 VSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
VSAT D L K+ +P +L++ ++ T L G+KQ + + ++
Sbjct: 200 VSATLPQDVLEMTNKFTTNPVRILVKRDELT--LEGLKQYFIAV---EKEEWKF----DT 250
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L L Q VIF N + + + + E + ANF + G QK R A + F++G
Sbjct: 251 LCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGN 310
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV 375
R+L+ TD+ ARGID V LVIN ++P + Y+HR+GR+GR+G +G+ I V+ E +
Sbjct: 311 SRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDV- 369
Query: 376 KFHSLMGEINLDHAFNVGLVPDNLTGDQI 404
++ +I ++ + +P N+ GD +
Sbjct: 370 ---RILRDIEQYYSTVIDEMPMNI-GDMV 394
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 537 (194.1 bits), Expect = 6.5e-51, Sum P(2) = 6.5e-51
Identities = 130/367 (35%), Positives = 214/367 (58%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + +N D+ +++ + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVE 132
F ++ L +L ++ +++ Q ++LAPTRE+A QI V+ ++G ++ H IGGT V
Sbjct: 86 TFAISILQQL-EIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHA--CIGGTNVR 142
Query: 133 RPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187
+ +Q IVVG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Query: 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNP 245
+L Q++++SAT D L +K+M +P+ L++ E+ T L G+KQ + E +
Sbjct: 203 KLSTNIQVVLLSATMPMDVLEVTKKFMREPIRILVKKEELT--LEGIKQFYINV-EREEW 259
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L D L + L+ T Q VIF N + + + + E + +F L G DQK R
Sbjct: 260 KL---DTLCDLYETLTIT---QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERD 313
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ F+ G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 314 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 373
Query: 366 ITIVSAE 372
I V+ E
Sbjct: 374 INFVTEE 380
Score = 40 (19.1 bits), Expect = 6.5e-51, Sum P(2) = 6.5e-51
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N + EM + NV+
Sbjct: 363 RGGRFGRKGVAINFVTEEDKRILRDIETFYNTT--VEEMPM-NVA 404
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 514 (186.0 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 145/504 (28%), Positives = 255/504 (50%)
Query: 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQT 93
Q ++ GF + +PIQ P+ L G D I Q+++GTGK+ F + L+K + + Q
Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK-VDTHKESVQG 73
Query: 94 IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVGSPGRIK 149
I++APTRE+A+Q+ + + +G H K + + GG + R R ++ I+VG+PGRI
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRIL 132
Query: 150 QMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT 209
I K L + +V ++DEAD+++N GF+EDI I + +P Q L+ SAT
Sbjct: 133 DHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRI 192
Query: 210 LQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267
+++M +P + ++ ++ T P ++Q + E K D +L+ + Q+P
Sbjct: 193 AERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKK-----FDVLTRLLDI--QSP-EL 242
Query: 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327
++F + R + + E L + AE + G Q R++ L FK G + +LV TD+AAR
Sbjct: 243 AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAAR 302
Query: 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI-NL 386
G+D + V V N +IP D +Y+HR+GR GR G +G+ + V+ G++ N+
Sbjct: 303 GLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-------SGQLKNI 355
Query: 387 DHAFNVGLVPDNLTGDQINWT-QRVQTLLAKPLDQAQEREDV---EQTAEESSKVENTKP 442
+ + D + ++ + Q L+A+ L E E++ ++ AEE + ++
Sbjct: 356 ERTTKRKM--DRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413
Query: 443 LRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQEK 502
+ A K +TK+ + T LT SE S G G+ G + ++++
Sbjct: 414 VVAAALKMMTKE---PDTTPIALT---SEPPVVSRGGGSKKRGGNGGGYRDGNRNRSRDG 467
Query: 503 CVKGAGEDENGDRKASKDEQKIDG 526
+G G+ N DR ++D + DG
Sbjct: 468 --RGGGDGRNRDR--NRDGRNRDG 487
Score = 63 (27.2 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 939 DGVRNDTRDERNGAYTGDKGGRNR-GHSVNSRKDHSFAGETPRSKGG 984
DG RN +RD R G G RNR G + + +D + G R++ G
Sbjct: 458 DGNRNRSRDGRGGG-DGRNRDRNRDGRNRDGNRDRNRDGNRDRNRDG 503
Score = 55 (24.4 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 29/86 (33%), Positives = 38/86 (44%)
Query: 892 GDRTKRRSRPRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDERNG 951
G R R+R R + D N +D+ + GR G +R R DG R+ RD G
Sbjct: 455 GYRDGNRNRSRDGRGGGDGRN---RDR-NRDGRNRDGNR---DRNR-DGNRDRNRD---G 503
Query: 952 AYTGDKG-GRNRGHSVNSR---KDHS 973
G +G G+ R S N R K HS
Sbjct: 504 GSRGRRGEGQGRPGSSNGRGERKHHS 529
Score = 51 (23.0 bits), Expect = 8.2e-51, Sum P(3) = 8.2e-51
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 801 SVRIGDNDG---TGNRSITRSKQNSQSGDHTDLKDSNRPNANTDPSTGKN 847
S + G N G GNR+ RS+ GD + +D NR N D + +N
Sbjct: 446 SKKRGGNGGGYRDGNRN--RSRDGRGGGDGRN-RDRNRDGRNRDGNRDRN 492
Score = 45 (20.9 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 793 FRSEDQSNSVRIGDNDGTG-NRSITRSKQNSQSGDHTDLKDSNRPNANTDPSTGK 846
+R +++ S R G G G NR R +N + G+ +D NR S G+
Sbjct: 456 YRDGNRNRS-RDGRGGGDGRNRDRNRDGRN-RDGNRDRNRDGNRDRNRDGGSRGR 508
Score = 39 (18.8 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 1062 DRYRPDSDGDPNR---RPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSK 1112
DR R + D NR R +++ S + + +PG R +K HS+
Sbjct: 477 DRNRDGRNRDGNRDRNRDGNRDRNRDGGSRGRRGEGQGRPGSSNGRGERKHHSR 530
Score = 38 (18.4 bits), Expect = 8.2e-51, Sum P(3) = 8.2e-51
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 1380 RGRQANTPTKTIGDTQGKRG-GRVNTRSNHVNSEDK 1414
R R N G ++G+RG G+ S++ E K
Sbjct: 491 RNRDGNRDRNRDGGSRGRRGEGQGRPGSSNGRGERK 526
Score = 37 (18.1 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 13/45 (28%), Positives = 17/45 (37%)
Query: 2121 NRCDREGHDPARGLPMRSHFHGVKRSNHCDRKPRGGRKRLESSGN 2165
NR R+G G + G R + DR G R R G+
Sbjct: 462 NR-SRDGRGGGDGRNRDRNRDGRNRDGNRDRNRDGNRDRNRDGGS 505
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 544 (196.6 bits), Expect = 7.1e-51, P = 7.1e-51
Identities = 121/357 (33%), Positives = 203/357 (56%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
ND+ I++ + +G+ E GF K S IQ A +L G D I Q++SGTGK+ + ++ ++
Sbjct: 38 NDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVC-QV 96
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP----VQ 139
+ ++ Q +IL+PTRE+A Q ++++G H N+ IGG V R V
Sbjct: 97 VDTSSREVQALILSPTRELATQTEKTIQAIGLHA-NIQAHACIGGNSVGEDIRKLEHGVH 155
Query: 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199
+V G+PGR+ MIK + L +++L I+DE+D++++ GF + I +Y LPP Q+ +VS
Sbjct: 156 VVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVS 215
Query: 200 ATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257
AT H+ L K+M +P +L++ ++ T L G+KQ + + ++ L
Sbjct: 216 ATLPHEILEMTSKFMTEPVKILVKRDELT--LEGIKQFFVAV---EKEEWKF----DTLC 266
Query: 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR 317
L Q VIF N + + + + E + + NF + G QK R A ++ F+ G R
Sbjct: 267 DLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSR 326
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
+L+TTD+ ARGID V LVIN ++P++ Y+HR+GR+GR+G +G+ I V ++ +
Sbjct: 327 VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI 383
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 542 (195.9 bits), Expect = 1.2e-50, P = 1.2e-50
Identities = 141/395 (35%), Positives = 220/395 (55%)
Query: 16 SNIDVLFEN-DVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN D + ++ D + KP + +G+ GF + S IQ A ++ G D I Q++SGTGK+
Sbjct: 18 SNYDEITDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTA 77
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133
F ++AL KL V+ Q +I+APTRE+A QI VV ++G + N+ IGGT V
Sbjct: 78 TFSISALQKLDP-NVKACQALIVAPTRELAQQIQKVVIAIGDFM-NIQCHACIGGTAVRD 135
Query: 134 PKRPV----QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
+ QIVVG+PGRI MI+ + L D +++FI+DEAD++++ GF E I I+ L
Sbjct: 136 DMNALREGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLL 195
Query: 190 PPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSL 247
P Q++++SAT D L K+M DP +L++ ++ T L G+KQ + +
Sbjct: 196 PQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELT--LEGIKQFYIAVEK------ 247
Query: 248 RYVDEEKKLVQL--LSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
EE KL L L +T Q VIF N + + + + + L +F + G +Q R
Sbjct: 248 ----EEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQR 303
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
+ F+ G R+L+ TDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 304 DVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGV 363
Query: 365 VITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
I V+A+ + +M EI ++ + +P N+
Sbjct: 364 AINFVTADDV----RMMREIEQFYSTQIEEMPMNV 394
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 542 (195.9 bits), Expect = 1.2e-50, P = 1.2e-50
Identities = 138/395 (34%), Positives = 221/395 (55%)
Query: 16 SNIDVLFE--NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
+N D + + +D+ ++ + +G+ GF + S IQ A +L D + Q++SGTGK+
Sbjct: 12 TNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTA 71
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133
F ++ L K I ++Q Q +ILAPTRE+A QI VV ++G + N+ IGGT V
Sbjct: 72 TFSISVLQK-IDTSLKQCQALILAPTRELAQQIQKVVVALG-DLMNVECHACIGGTLVRD 129
Query: 134 PKRPVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
+Q +VVG+PGR+ MI+ + L D+V++F++DEAD++++ GF + I I+ L
Sbjct: 130 DMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLL 189
Query: 190 PPMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSL 247
PP Q++++SAT D L K+M DP+ L++ ++ T L G+KQ + +
Sbjct: 190 PPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELT--LEGIKQFYVAVEK------ 241
Query: 248 RYVDEEKKLVQL--LSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
EE KL L L +T Q VIF N + + + + E L +F + G DQ R
Sbjct: 242 ----EEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQR 297
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
+ F+ G RIL+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 298 DTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGV 357
Query: 365 VITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
I V+ + + +M EI + ++ +P N+
Sbjct: 358 SINFVTNDDV----RMMREIEQFYNTHIEEMPMNI 388
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 531 (192.0 bits), Expect = 2.8e-50, Sum P(2) = 2.8e-50
Identities = 130/367 (35%), Positives = 213/367 (58%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + +N D+ +++ + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 30 SNWNEITDNFDDMNLKETLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 89
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVE 132
F ++ L +L ++ ++ Q ++LAPTRE+A QI V+ ++G ++ + H IGGT V
Sbjct: 90 TFAISILQQL-EIEQKETQALVLAPTRELAQQIQKVILALGDYMGASCHA--CIGGTNVR 146
Query: 133 RPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187
+ +Q IVVG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+
Sbjct: 147 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 206
Query: 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNP 245
+L Q++++SAT D L K+M +P +L++ E+ T L G+KQ + E +
Sbjct: 207 KLSTNIQVVLLSATMPADVLEVTTKFMREPVRILVKKEELT--LEGIKQFYINV-EREEW 263
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L D L + L+ T Q VIF N + + + + E + +F L G DQK R
Sbjct: 264 KL---DTLCDLYETLTIT---QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERD 317
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ F+ G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+
Sbjct: 318 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 377
Query: 366 ITIVSAE 372
I V+ E
Sbjct: 378 INFVTEE 384
Score = 40 (19.1 bits), Expect = 2.8e-50, Sum P(2) = 2.8e-50
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N + EM + NV+
Sbjct: 367 RGGRFGRKGVAINFVTEEDKRILRDIETFYNTT--VEEMPM-NVA 408
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 538 (194.4 bits), Expect = 3.1e-50, P = 3.1e-50
Identities = 132/382 (34%), Positives = 204/382 (53%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T+DVL+ FE D +++ + G+ E GF K SPIQ + P L G D + ++K+GT
Sbjct: 20 QTEDVLNTKGKSFE-DFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGT 78
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ F++ L +L+K + + Q +IL PTRE+A+Q + VVR++G HV GGT
Sbjct: 79 GKTASFIIPCL-QLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHV-GTQCMVTTGGT 136
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R PV I+VG+PGR+ + K +++ LF+MDEADK+++ F I I
Sbjct: 137 SLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQI 196
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
PP +Q L+ SAT+ + + K++ P I D L G+ Q A + E
Sbjct: 197 LEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLMDELT-LKGISQFYAFVEE--KQ 253
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L ++ L S+ NQ +IF N R E++ + + + Y Q+AR
Sbjct: 254 KLHCLNT------LFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARN 307
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
F++GKVR LV +DL RGID V++VIN + P A TYLHR+GR+GR+G GL
Sbjct: 308 KVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA 367
Query: 366 ITIVSAESLVKFHSLMGEINLD 387
I ++S + + E+ +
Sbjct: 368 INLMSWNDRYSLYKIEQELGTE 389
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 538 (194.4 bits), Expect = 3.1e-50, P = 3.1e-50
Identities = 132/382 (34%), Positives = 204/382 (53%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T+DVL+ FE D +++ + G+ E GF K SPIQ + P L G D + ++K+GT
Sbjct: 20 QTEDVLNTKGKSFE-DFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGT 78
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ F++ L +L+K + + Q +IL PTRE+A+Q + VVR++G HV GGT
Sbjct: 79 GKTASFIIPCL-QLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHV-GTQCMVTTGGT 136
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R PV I+VG+PGR+ + K +++ LF+MDEADK+++ F I I
Sbjct: 137 SLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQI 196
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
PP +Q L+ SAT+ + + K++ P I D L G+ Q A + E
Sbjct: 197 LEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLMDELT-LKGISQFYAFVEE--KQ 253
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L ++ L S+ NQ +IF N R E++ + + + Y Q+AR
Sbjct: 254 KLHCLNT------LFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARN 307
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
F++GKVR LV +DL RGID V++VIN + P A TYLHR+GR+GR+G GL
Sbjct: 308 KVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA 367
Query: 366 ITIVSAESLVKFHSLMGEINLD 387
I ++S + + E+ +
Sbjct: 368 INLMSWNDRYSLYKIEQELGTE 389
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 507 (183.5 bits), Expect = 4.8e-50, Sum P(2) = 4.8e-50
Identities = 145/514 (28%), Positives = 256/514 (49%)
Query: 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQT 93
Q ++ GF + +PIQ P+ L G D I Q+++GTGK+ F + L+K + + Q
Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK-VDTHKESVQG 73
Query: 94 IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVGSPGRIK 149
I++APTRE+A+Q+ + + +G H K + + GG + R R ++ I+VG+PGRI
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRIL 132
Query: 150 QMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT 209
I K L + +V ++DEAD+++N GF+EDI I + +P Q L+ SAT
Sbjct: 133 DHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRI 192
Query: 210 LQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267
+++M +P + ++ ++ T P ++Q + E K D +L+ + Q+P
Sbjct: 193 AERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKK-----FDVLTRLLDI--QSP-EL 242
Query: 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327
++F + R + + E L + AE + G Q R++ L FK G + +LV TD+AAR
Sbjct: 243 AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAAR 302
Query: 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI-NL 386
G+D + V V N +IP D +Y+HR+GR GR G +G+ + V+ G++ N+
Sbjct: 303 GLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-------SGQLKNI 355
Query: 387 DHAFNVGLVPDNLTGDQINWT-QRVQTLLAKPLDQAQEREDV---EQTAEESSKVENTKP 442
+ + D + ++ + Q L+A+ L E E++ ++ AEE + ++
Sbjct: 356 ERTTKRKM--DRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEMLEENDSVT 413
Query: 443 LRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQE- 501
+ A K +TK+ + T LT SE + G G+ G + ++++
Sbjct: 414 VVAAALKMMTKE---PDTTPIALT---SEPPVVARGGGSKKRGGNGGGYRDGNRNRSRDG 467
Query: 502 KCVKGAGEDENGD---RKASKDEQKIDGANSAEK 532
+ G D N D R ++D + DG N +
Sbjct: 468 RGGDGRNRDRNRDGRNRDGNRDRNR-DGGNRGRR 500
Score = 62 (26.9 bits), Expect = 4.8e-50, Sum P(2) = 4.8e-50
Identities = 21/62 (33%), Positives = 25/62 (40%)
Query: 915 GQDKTSAHGRTPSGGHRTPER--RRSDGVRNDTRDERNGAYTGDKGGR-NRGHSVNSRKD 971
G S GR G +R R R DG R+ RD N G+ GR + RK
Sbjct: 459 GNRNRSRDGRGGDGRNRDRNRDGRNRDGNRDRNRDGGNRGRRGEGQGRPGSSNGRGERKH 518
Query: 972 HS 973
HS
Sbjct: 519 HS 520
Score = 43 (20.2 bits), Expect = 4.8e-48, Sum P(2) = 4.8e-48
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 1801 GENSPTDEDEDANNSQND--GESTAQNSQSDENSHDGESDSHSVKSNESHFGNSRCQP 1856
G N D + N S++ G+ ++ D + DG D + N G + +P
Sbjct: 450 GGNGGGYRDGNRNRSRDGRGGDGRNRDRNRDGRNRDGNRDRNRDGGNRGRRGEGQGRP 507
Score = 37 (18.1 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 1380 RGRQANTPTKTIGDTQGKRG-GRVNTRSNHVNSEDK 1414
R R N G +G+RG G+ S++ E K
Sbjct: 482 RNRDGNRDRNRDGGNRGRRGEGQGRPGSSNGRGERK 517
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 508 (183.9 bits), Expect = 9.9e-50, Sum P(2) = 9.9e-50
Identities = 148/521 (28%), Positives = 262/521 (50%)
Query: 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQT 93
Q ++ GF + +PIQ P+ L G D I Q+++GTGK+ F + L+K + + Q
Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK-VDTHKESVQG 73
Query: 94 IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVGSPGRIK 149
I++APTRE+A+Q+ + + +G H K + + GG + R R ++ I+VG+PGRI
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRIL 132
Query: 150 QMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT 209
I K L + +V ++DEAD+++N GF+EDI I + +P Q L+ SAT
Sbjct: 133 DHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRI 192
Query: 210 LQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267
+++M +P + ++ ++ T P ++Q + E K D +L+ + Q+P
Sbjct: 193 AERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKK-----FDVLTRLLDI--QSP-EL 242
Query: 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327
++F + R + + E L + AE + G Q R++ L FK G + +LV TD+AAR
Sbjct: 243 AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAAR 302
Query: 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI-NL 386
G+D + V V N +IP D +Y+HR+GR GR G +G+ + V+ G++ N+
Sbjct: 303 GLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-------SGQLKNI 355
Query: 387 DHAFNVGLVPDNLTGDQINWT-QRVQTLLAKPLDQAQEREDV---EQTAEESSKVENTKP 442
+ + D + ++ + Q L+A+ L E E++ ++ AEE + ++
Sbjct: 356 ERTTKRKM--DRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413
Query: 443 LRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQEK 502
+ A K +TK+ + T LT SE S G G+ G + ++++
Sbjct: 414 VVAAALKMMTKE---PDTTPIALT---SEPPVVSRGGGSKKRGGNGGGYRDGNRNRSRDG 467
Query: 503 CVKGAGEDENGDRKASKDEQKIDGAN--SAEKSLEDKHGKK 541
+G G+ N DR ++D + DG + E S + G++
Sbjct: 468 --RG-GDGRNRDR--NRDGRNRDGNRDRNREGSRDGNRGRR 503
Score = 58 (25.5 bits), Expect = 9.9e-50, Sum P(2) = 9.9e-50
Identities = 23/67 (34%), Positives = 29/67 (43%)
Query: 915 GQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDE-RNGAYTGDKGGRNRGH----SVNSR 969
G S GR G +R +R R R+ RD R G+ G++G R G S N R
Sbjct: 459 GNRNRSRDGRGGDGRNR--DRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSNGR 516
Query: 970 ---KDHS 973
K HS
Sbjct: 517 GERKHHS 523
Score = 56 (24.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 939 DGVRNDTRDERNGAYTGDKGGRNR-GHSVNSRKDHSFAGETPRSKG 983
DG RN +RD R G G RNR G + + +D + G ++G
Sbjct: 458 DGNRNRSRDGRGG--DGRNRDRNRDGRNRDGNRDRNREGSRDGNRG 501
Score = 42 (19.8 bits), Expect = 4.8e-48, Sum P(2) = 4.8e-48
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 1801 GENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSN 1845
G+ D + D N + + + S+ GE SN
Sbjct: 470 GDGRNRDRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSN 514
Score = 38 (18.4 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 1062 DRYRPDSDGDPNRRPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSK 1112
DR R + D NR + + S N + + +PG R +K HS+
Sbjct: 476 DRNRDGRNRDGNRDRNREGSRDGNRGR--RGEGQGRPGSSNGRGERKHHSR 524
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 508 (183.9 bits), Expect = 9.9e-50, Sum P(2) = 9.9e-50
Identities = 148/521 (28%), Positives = 262/521 (50%)
Query: 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQT 93
Q ++ GF + +PIQ P+ L G D I Q+++GTGK+ F + L+K + + Q
Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK-VDTHKESVQG 73
Query: 94 IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVGSPGRIK 149
I++APTRE+A+Q+ + + +G H K + + GG + R R ++ I+VG+PGRI
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRIL 132
Query: 150 QMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT 209
I K L + +V ++DEAD+++N GF+EDI I + +P Q L+ SAT
Sbjct: 133 DHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRI 192
Query: 210 LQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267
+++M +P + ++ ++ T P ++Q + E K D +L+ + Q+P
Sbjct: 193 AERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKK-----FDVLTRLLDI--QSP-EL 242
Query: 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327
++F + R + + E L + AE + G Q R++ L FK G + +LV TD+AAR
Sbjct: 243 AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAAR 302
Query: 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI-NL 386
G+D + V V N +IP D +Y+HR+GR GR G +G+ + V+ G++ N+
Sbjct: 303 GLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-------SGQLKNI 355
Query: 387 DHAFNVGLVPDNLTGDQINWT-QRVQTLLAKPLDQAQEREDV---EQTAEESSKVENTKP 442
+ + D + ++ + Q L+A+ L E E++ ++ AEE + ++
Sbjct: 356 ERTTKRKM--DRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413
Query: 443 LRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQEK 502
+ A K +TK+ + T LT SE S G G+ G + ++++
Sbjct: 414 VVAAALKMMTKE---PDTTPIALT---SEPPVVSRGGGSKKRGGNGGGYRDGNRNRSRDG 467
Query: 503 CVKGAGEDENGDRKASKDEQKIDGAN--SAEKSLEDKHGKK 541
+G G+ N DR ++D + DG + E S + G++
Sbjct: 468 --RG-GDGRNRDR--NRDGRNRDGNRDRNREGSRDGNRGRR 503
Score = 58 (25.5 bits), Expect = 9.9e-50, Sum P(2) = 9.9e-50
Identities = 23/67 (34%), Positives = 29/67 (43%)
Query: 915 GQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDE-RNGAYTGDKGGRNRGH----SVNSR 969
G S GR G +R +R R R+ RD R G+ G++G R G S N R
Sbjct: 459 GNRNRSRDGRGGDGRNR--DRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSNGR 516
Query: 970 ---KDHS 973
K HS
Sbjct: 517 GERKHHS 523
Score = 56 (24.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 939 DGVRNDTRDERNGAYTGDKGGRNR-GHSVNSRKDHSFAGETPRSKG 983
DG RN +RD R G G RNR G + + +D + G ++G
Sbjct: 458 DGNRNRSRDGRGG--DGRNRDRNRDGRNRDGNRDRNREGSRDGNRG 501
Score = 42 (19.8 bits), Expect = 4.8e-48, Sum P(2) = 4.8e-48
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 1801 GENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSN 1845
G+ D + D N + + + S+ GE SN
Sbjct: 470 GDGRNRDRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSN 514
Score = 38 (18.4 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 1062 DRYRPDSDGDPNRRPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSK 1112
DR R + D NR + + S N + + +PG R +K HS+
Sbjct: 476 DRNRDGRNRDGNRDRNREGSRDGNRGR--RGEGQGRPGSSNGRGERKHHSR 524
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 508 (183.9 bits), Expect = 9.9e-50, Sum P(2) = 9.9e-50
Identities = 148/521 (28%), Positives = 262/521 (50%)
Query: 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQT 93
Q ++ GF + +PIQ P+ L G D I Q+++GTGK+ F + L+K + + Q
Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK-VDTHKESVQG 73
Query: 94 IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVGSPGRIK 149
I++APTRE+A+Q+ + + +G H K + + GG + R R ++ I+VG+PGRI
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRIL 132
Query: 150 QMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT 209
I K L + +V ++DEAD+++N GF+EDI I + +P Q L+ SAT
Sbjct: 133 DHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRI 192
Query: 210 LQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267
+++M +P + ++ ++ T P ++Q + E K D +L+ + Q+P
Sbjct: 193 AERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKK-----FDVLTRLLDI--QSP-EL 242
Query: 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327
++F + R + + E L + AE + G Q R++ L FK G + +LV TD+AAR
Sbjct: 243 AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAAR 302
Query: 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI-NL 386
G+D + V V N +IP D +Y+HR+GR GR G +G+ + V+ G++ N+
Sbjct: 303 GLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-------SGQLKNI 355
Query: 387 DHAFNVGLVPDNLTGDQINWT-QRVQTLLAKPLDQAQEREDV---EQTAEESSKVENTKP 442
+ + D + ++ + Q L+A+ L E E++ ++ AEE + ++
Sbjct: 356 ERTTKRKM--DRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413
Query: 443 LRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQEK 502
+ A K +TK+ + T LT SE S G G+ G + ++++
Sbjct: 414 VVAAALKMMTKE---PDTTPIALT---SEPPVVSRGGGSKKRGGNGGGYRDGNRNRSRDG 467
Query: 503 CVKGAGEDENGDRKASKDEQKIDGAN--SAEKSLEDKHGKK 541
+G G+ N DR ++D + DG + E S + G++
Sbjct: 468 --RG-GDGRNRDR--NRDGRNRDGNRDRNREGSRDGNRGRR 503
Score = 58 (25.5 bits), Expect = 9.9e-50, Sum P(2) = 9.9e-50
Identities = 23/67 (34%), Positives = 29/67 (43%)
Query: 915 GQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDE-RNGAYTGDKGGRNRGH----SVNSR 969
G S GR G +R +R R R+ RD R G+ G++G R G S N R
Sbjct: 459 GNRNRSRDGRGGDGRNR--DRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSNGR 516
Query: 970 ---KDHS 973
K HS
Sbjct: 517 GERKHHS 523
Score = 56 (24.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 939 DGVRNDTRDERNGAYTGDKGGRNR-GHSVNSRKDHSFAGETPRSKG 983
DG RN +RD R G G RNR G + + +D + G ++G
Sbjct: 458 DGNRNRSRDGRGG--DGRNRDRNRDGRNRDGNRDRNREGSRDGNRG 501
Score = 42 (19.8 bits), Expect = 4.8e-48, Sum P(2) = 4.8e-48
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 1801 GENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSN 1845
G+ D + D N + + + S+ GE SN
Sbjct: 470 GDGRNRDRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSN 514
Score = 38 (18.4 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 1062 DRYRPDSDGDPNRRPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSK 1112
DR R + D NR + + S N + + +PG R +K HS+
Sbjct: 476 DRNRDGRNRDGNRDRNREGSRDGNRGR--RGEGQGRPGSSNGRGERKHHSR 524
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 508 (183.9 bits), Expect = 9.9e-50, Sum P(2) = 9.9e-50
Identities = 148/521 (28%), Positives = 262/521 (50%)
Query: 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQT 93
Q ++ GF + +PIQ P+ L G D I Q+++GTGK+ F + L+K + + Q
Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK-VDTHKESVQG 73
Query: 94 IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVGSPGRIK 149
I++APTRE+A+Q+ + + +G H K + + GG + R R ++ I+VG+PGRI
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRIL 132
Query: 150 QMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT 209
I K L + +V ++DEAD+++N GF+EDI I + +P Q L+ SAT
Sbjct: 133 DHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRI 192
Query: 210 LQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267
+++M +P + ++ ++ T P ++Q + E K D +L+ + Q+P
Sbjct: 193 AERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKK-----FDVLTRLLDI--QSP-EL 242
Query: 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327
++F + R + + E L + AE + G Q R++ L FK G + +LV TD+AAR
Sbjct: 243 AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAAR 302
Query: 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI-NL 386
G+D + V V N +IP D +Y+HR+GR GR G +G+ + V+ G++ N+
Sbjct: 303 GLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-------SGQLKNI 355
Query: 387 DHAFNVGLVPDNLTGDQINWT-QRVQTLLAKPLDQAQEREDV---EQTAEESSKVENTKP 442
+ + D + ++ + Q L+A+ L E E++ ++ AEE + ++
Sbjct: 356 ERTTKRKM--DRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413
Query: 443 LRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQEK 502
+ A K +TK+ + T LT SE S G G+ G + ++++
Sbjct: 414 VVAAALKMMTKE---PDTTPIALT---SEPPVVSRGGGSKKRGGNGGGYRDGNRNRSRDG 467
Query: 503 CVKGAGEDENGDRKASKDEQKIDGAN--SAEKSLEDKHGKK 541
+G G+ N DR ++D + DG + E S + G++
Sbjct: 468 --RG-GDGRNRDR--NRDGRNRDGNRDRNREGSRDGNRGRR 503
Score = 58 (25.5 bits), Expect = 9.9e-50, Sum P(2) = 9.9e-50
Identities = 23/67 (34%), Positives = 29/67 (43%)
Query: 915 GQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDE-RNGAYTGDKGGRNRGH----SVNSR 969
G S GR G +R +R R R+ RD R G+ G++G R G S N R
Sbjct: 459 GNRNRSRDGRGGDGRNR--DRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSNGR 516
Query: 970 ---KDHS 973
K HS
Sbjct: 517 GERKHHS 523
Score = 56 (24.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 939 DGVRNDTRDERNGAYTGDKGGRNR-GHSVNSRKDHSFAGETPRSKG 983
DG RN +RD R G G RNR G + + +D + G ++G
Sbjct: 458 DGNRNRSRDGRGG--DGRNRDRNRDGRNRDGNRDRNREGSRDGNRG 501
Score = 42 (19.8 bits), Expect = 4.8e-48, Sum P(2) = 4.8e-48
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 1801 GENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSN 1845
G+ D + D N + + + S+ GE SN
Sbjct: 470 GDGRNRDRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSN 514
Score = 38 (18.4 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 1062 DRYRPDSDGDPNRRPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSK 1112
DR R + D NR + + S N + + +PG R +K HS+
Sbjct: 476 DRNRDGRNRDGNRDRNREGSRDGNRGR--RGEGQGRPGSSNGRGERKHHSR 524
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 533 (192.7 bits), Expect = 1.0e-49, P = 1.0e-49
Identities = 133/385 (34%), Positives = 203/385 (52%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DVL+ FE D +++ + G+ E GF K SPIQ A P + G D + ++K+GT
Sbjct: 36 QTDDVLNTKGNTFE-DFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGT 94
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ FV+ L K +K + + Q +I+ PTRE+A+Q + VVR++G H + GGT
Sbjct: 95 GKTAAFVIPTLEK-VKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGT 152
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V I+VG+PGR+ + K ++ LFIMDEADK+++ F I I
Sbjct: 153 NLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQI 212
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
S LPP Q L+ SAT+ + K++ P I E+ T L G+ Q A + E
Sbjct: 213 LSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELT--LKGITQYYAFVEE--R 268
Query: 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
L ++ L S+ NQ +IF N R E++ + + + + Y Q+ R
Sbjct: 269 QKLHCLNT------LFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQER 322
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
F++GKVR LV +DL RGID V++VIN + P A TYLHR+GR+GR+G GL
Sbjct: 323 NKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL 382
Query: 365 VITIVSAESLVKFHSLMGEINLDHA 389
I +++ + + E+ + A
Sbjct: 383 AINLINWNDRFNLYKIEQELGTEIA 407
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 519 (187.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 125/355 (35%), Positives = 204/355 (57%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+ F ++ L +
Sbjct: 35 DDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ- 93
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVERPKRPVQ--- 139
I+L ++ Q ++LAPTRE+A QI VV ++G ++ + H IGGT V + +Q
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA--CIGGTNVRAEVQKLQMEA 151
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
I+VG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L Q+++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257
+SAT D L +K+M DP+ I L G++Q + E + L D L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRI-----XLTLEGIRQFYINV-EREEWKL---DTLCDLY 262
Query: 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR 317
+ L+ T Q VIF N + + + + E + +F + G DQK R + F+ G R
Sbjct: 263 ETLTIT---QAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 319
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I +V+ E
Sbjct: 320 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 374
Score = 45 (20.9 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N I EM L NV+
Sbjct: 357 RGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS--IEEMPL-NVA 398
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 531 (192.0 bits), Expect = 1.7e-49, P = 1.7e-49
Identities = 136/392 (34%), Positives = 219/392 (55%)
Query: 16 SNID-VLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
+N D V+++ D L KP I +G+ G+ S IQ A + G D + Q++SGTGK+
Sbjct: 16 TNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTA 75
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ--- 130
F ++AL + I + Q +ILAPTRE+A+QI +V+ ++G ++K + V IGGT
Sbjct: 76 TFTISALQR-INENEKATQALILAPTRELALQIKNVITAIGLYLK-VTVHASIGGTSMSD 133
Query: 131 -VERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
+E + VQIVVG+PGR+ MI+ +Y D V++FI+DEAD+++++GF E I I+ L
Sbjct: 134 DIEAFRSGVQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLL 193
Query: 190 PPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSL 247
P Q++++SAT D L K+M +P +L++ ++ T L G+KQ + E ++
Sbjct: 194 PETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELT--LEGIKQFYINV-ELED--- 247
Query: 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307
Y + L L Q VIF N + + E + L +F + Q R
Sbjct: 248 -YKFD--CLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTI 304
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
+ F+ G RIL++TDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I
Sbjct: 305 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN 364
Query: 368 IVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
V+ + +M EI ++ + +P ++
Sbjct: 365 FVTDRDV----GMMREIEKFYSTQIEEMPADI 392
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 531 (192.0 bits), Expect = 1.7e-49, P = 1.7e-49
Identities = 136/392 (34%), Positives = 219/392 (55%)
Query: 16 SNID-VLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
+N D V+++ D L KP I +G+ G+ S IQ A + G D + Q++SGTGK+
Sbjct: 16 TNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTA 75
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ--- 130
F ++AL + I + Q +ILAPTRE+A+QI +V+ ++G ++K + V IGGT
Sbjct: 76 TFTISALQR-INENEKATQALILAPTRELALQIKNVITAIGLYLK-VTVHASIGGTSMSD 133
Query: 131 -VERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
+E + VQIVVG+PGR+ MI+ +Y D V++FI+DEAD+++++GF E I I+ L
Sbjct: 134 DIEAFRSGVQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLL 193
Query: 190 PPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSL 247
P Q++++SAT D L K+M +P +L++ ++ T L G+KQ + E ++
Sbjct: 194 PETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELT--LEGIKQFYINV-ELED--- 247
Query: 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307
Y + L L Q VIF N + + E + L +F + Q R
Sbjct: 248 -YKFD--CLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTI 304
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
+ F+ G RIL++TDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I
Sbjct: 305 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN 364
Query: 368 IVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
V+ + +M EI ++ + +P ++
Sbjct: 365 FVTDRDV----GMMREIEKFYSTQIEEMPADI 392
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 505 (182.8 bits), Expect = 2.1e-49, Sum P(2) = 2.1e-49
Identities = 136/497 (27%), Positives = 244/497 (49%)
Query: 34 QGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQT 93
Q ++ GF + +PIQ P+ L G D I Q+++GTGK+ F + L+K + + Q
Sbjct: 15 QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK-VDTHKESVQG 73
Query: 94 IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVGSPGRIK 149
I++APTRE+A+Q+ + + +G H K + + GG + R R ++ I+VG+PGRI
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRIL 132
Query: 150 QMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT 209
I K L + +V ++DEAD+++N GF+EDI I + +P Q L+ SAT
Sbjct: 133 DHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRI 192
Query: 210 LQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267
+++M +P + ++ ++ T P ++Q + E K D +L+ + Q+P
Sbjct: 193 AERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKK-----FDVLTRLLDI--QSP-EL 242
Query: 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327
++F + R + + E L + AE + G Q R++ L FK G + +LV TD+AAR
Sbjct: 243 AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAAR 302
Query: 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL--MGEIN 385
G+D + V V N +IP D +Y+HR+GR GR G +G+ + V+ + ++ +
Sbjct: 303 GLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRK 362
Query: 386 LDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEESSKVENTKPLRG 445
+D + + + L G Q +++Q+ + + A + E+ EE+ V
Sbjct: 363 MDR-MDAPTLDEALEGQQRLIAEKLQSTIENE-NLAYYKRIAEEMLEENDSVTVVAAALK 420
Query: 446 APSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQEKCVK 505
+KE + + G ++ G D N ++ R + + +++
Sbjct: 421 MMTKEPDTTPIALTSEPPVVARGGGSKKRGGNGGGYRDGNRNRSRDGRGGDGRNRDRNRD 480
Query: 506 GAGEDENGDR--KASKD 520
G D N DR + S+D
Sbjct: 481 GRNRDGNRDRNREGSRD 497
Score = 58 (25.5 bits), Expect = 2.1e-49, Sum P(2) = 2.1e-49
Identities = 23/67 (34%), Positives = 29/67 (43%)
Query: 915 GQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDE-RNGAYTGDKGGRNRGH----SVNSR 969
G S GR G +R +R R R+ RD R G+ G++G R G S N R
Sbjct: 459 GNRNRSRDGRGGDGRNR--DRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSNGR 516
Query: 970 ---KDHS 973
K HS
Sbjct: 517 GERKHHS 523
Score = 56 (24.8 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 939 DGVRNDTRDERNGAYTGDKGGRNR-GHSVNSRKDHSFAGETPRSKG 983
DG RN +RD R G G RNR G + + +D + G ++G
Sbjct: 458 DGNRNRSRDGRGG--DGRNRDRNRDGRNRDGNRDRNREGSRDGNRG 501
Score = 42 (19.8 bits), Expect = 9.9e-48, Sum P(2) = 9.9e-48
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 1801 GENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSN 1845
G+ D + D N + + + S+ GE SN
Sbjct: 470 GDGRNRDRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSN 514
Score = 38 (18.4 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 1062 DRYRPDSDGDPNRRPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSK 1112
DR R + D NR + + S N + + +PG R +K HS+
Sbjct: 476 DRNRDGRNRDGNRDRNREGSRDGNRGR--RGEGQGRPGSSNGRGERKHHSR 524
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 529 (191.3 bits), Expect = 2.8e-49, P = 2.8e-49
Identities = 154/513 (30%), Positives = 250/513 (48%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T+DV + + FEN L ++ + G+ E GF K SPIQ + P L G D + ++K+GT
Sbjct: 37 QTEDVTNTKGLEFENFGL-KRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGT 95
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ FVV AL + I V + Q +IL PTRE+A+Q + V +++G H+ ++V GGT
Sbjct: 96 GKTAAFVVPAL-ETINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGT 153
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R + PV IVVG+PGRI + ++ +FIMDEADKL++ F I +
Sbjct: 154 TLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQL 213
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
P +Q+++ SAT+ K M +P I D L G+ Q A
Sbjct: 214 LQFHPKDRQVMLFSATFPISVKEFSDKNMTNPYEINLMDELT-LRGITQYYA-------- 264
Query: 246 SLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQK 302
+V+E++K L L S+ NQ +IF N R E++ + + + Y Q+
Sbjct: 265 ---FVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQQ 321
Query: 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR 362
AR F+ G R LV +DL RGID V++VIN + P +A TYLHR+GR+GRYG
Sbjct: 322 ARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHL 381
Query: 363 GLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQ 422
GL I ++S E +F+ + I D + +P + D+ + + +P++
Sbjct: 382 GLAINLISWED--RFN--LYNIERDLGTEIQPIPSTI--DKSLYVYDNPETIPRPIN--- 432
Query: 423 EREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKP 482
+ + ++ P +G P ++ + +E W +G+ S + P
Sbjct: 433 ----IPAQPSSAGNAQSAAPNQGPPPQQ-QRPHQGQEN--WQNQNGRHNGSSQQQQPRGP 485
Query: 483 DENGSQRGSKRSKEFKTQEKCVKGAGEDENGDR 515
+N + G + F+ Q + + + G R
Sbjct: 486 HQNRGRGGGRGRGGFQGQGQGQRNYNNNYRGGR 518
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 528 (190.9 bits), Expect = 3.6e-49, P = 3.6e-49
Identities = 127/362 (35%), Positives = 207/362 (57%)
Query: 16 SNIDV--LFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
S ++V FE+ L E+ +R G+ GF K S IQ A ++ G D I Q++SGTGK+
Sbjct: 26 SEVEVKPTFESMGLREELLR-GIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTA 84
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ--- 130
F + AL + +++ V+ PQ +IL+PTRE+A QI V ++ + N+ V +GG
Sbjct: 85 TFSIGAL-QCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFM-NIQVHACVGGKNLSD 142
Query: 131 -VERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
V++ + V IV G+PGR+ MI K L +++ I+DEAD++++ GF + I +Y L
Sbjct: 143 DVKKLETGVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYL 202
Query: 190 PPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSL 247
P Q+++VSAT + D ++ +K+M P +L++ ++ T L G+KQ + +
Sbjct: 203 PNGTQIVLVSATLTQDVVSMTEKFMTKPVRILLKRDELT--LDGIKQFFVSV---EKEDW 257
Query: 248 RYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307
++ L + Q VIF N + + + + E + +ANF + G QK R
Sbjct: 258 KF----GTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEI 313
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
+ SF+ G+ R+L+TTD+ ARGID V LVIN ++P D Y+HR+GR+GR+G +G+ I
Sbjct: 314 IKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAIN 373
Query: 368 IV 369
V
Sbjct: 374 FV 375
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 499 (180.7 bits), Expect = 8.3e-49, Sum P(3) = 8.3e-49
Identities = 142/513 (27%), Positives = 256/513 (49%)
Query: 15 LSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIV 74
+S+ + F L E +R L E G+ K +PIQ A+ ++ G D + Q+++GTGK+
Sbjct: 1 MSSDERTFRELGLSENLLR-ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGA 59
Query: 75 FVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP 134
F + LNK+ PQ ++LAPTRE+AVQ+ + S +KN HV GG +++
Sbjct: 60 FALPLLNKVTSQTT--PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQ 117
Query: 135 ----KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP 190
KR Q++VG+PGR+ ++ L +++++ ++DEAD+++ GF++DI WI P
Sbjct: 118 LNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTP 177
Query: 191 PMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
P +Q+ + SAT K++ ++AT + E + +
Sbjct: 178 PQRQLALFSATMPEQIKRVANKHL--------KNATNISIAASHTTVDSIEQRFVQVSQH 229
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
++ + LV++L +IF + + E L + + L G +Q+AR +++
Sbjct: 230 NKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQ 289
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
K GK+ IL+ TD+AARG+D + V+N +IP+D Y+HR+GR GR G G+ I V+
Sbjct: 290 LKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVT 349
Query: 371 AESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTL---LAKPLDQAQE--RE 425
+ + ++ + A N + P + + +R+ L LA+ ++ E RE
Sbjct: 350 SREMRMLRTI------ERATNSRISPMKVPSPETVAERRLSRLGEQLAQTMNNDLEFMRE 403
Query: 426 DVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDEN 485
V Q ++ +V+ T L A +V ++ + + + +E S+ G +
Sbjct: 404 AVAQLCQQL-EVD-TDLLAAALLHQVQQERPLQLPA---IQERVRDERSERSERGS--DR 456
Query: 486 GSQRGSKRSKEFKTQEKCVKGAGE--DENGDRK 516
G++RG +RS+E + + G+ E +N D K
Sbjct: 457 GAERGERRSRESRPMPASL-GSAEALKDNPDLK 488
Score = 47 (21.6 bits), Expect = 8.3e-49, Sum P(3) = 8.3e-49
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 1900 ESAAREKNSGQRSRGSGDKAARKSASLPAS---QIALRDGKGDFKSPR 1944
E + R + R G++ +R+S +PAS AL+D D K R
Sbjct: 445 ERSERSERGSDRGAERGERRSRESRPMPASLGSAEALKDNP-DLKMCR 491
Score = 46 (21.3 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 886 SDSKPYGDRTKRRSRPRKNKE 906
+D KP D+ RPRK +E
Sbjct: 602 ADRKPRSDKPAGERRPRKPRE 622
Score = 42 (19.8 bits), Expect = 4.3e-47, Sum P(2) = 4.3e-47
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 1043 EQPVDEKKSRRELSQKMDSDRYRPDSDGDPN-RRP 1076
++P ++K R K +DR +P SD RRP
Sbjct: 584 DRPAGDRKPRAASGDKPFADR-KPRSDKPAGERRP 617
Score = 40 (19.1 bits), Expect = 6.9e-47, Sum P(2) = 6.9e-47
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 886 SDSKPYGDRTKRRSRP 901
S KP+ DR R +P
Sbjct: 596 SGDKPFADRKPRSDKP 611
Score = 38 (18.4 bits), Expect = 8.3e-49, Sum P(3) = 8.3e-49
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 2145 RSNHCDRKPR-----GGRKRLESSGNETF 2168
R DR+PR G RK +SG++ F
Sbjct: 573 RGARSDRRPRSDRPAGDRKPRAASGDKPF 601
>ZFIN|ZDB-GENE-040120-6 [details] [associations]
symbol:eif4a1b "eukaryotic translation initiation
factor 4A, isoform 1B" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040120-6 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 OrthoDB:EOG4640C1 EMBL:BC153507
IPI:IPI00509685 UniGene:Dr.104803 ProteinModelPortal:A8E590
SMR:A8E590 STRING:A8E590 ArrayExpress:A8E590 Uniprot:A8E590
Length = 429
Score = 518 (187.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 128/370 (34%), Positives = 211/370 (57%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN D + ++ D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 48 SNWDEIVDSFDDMNLRETLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 107
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVE 132
F ++ L + I + ++ Q ++LAPTRE+A QI V+ ++G ++ H IGGT V
Sbjct: 108 TFAISILQQ-IDIELKGTQALVLAPTRELAQQIQKVILALGDYMGATCHA--CIGGTNVR 164
Query: 133 RPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187
+ +Q IVVG+PGR+ M+ K+L+ +++F++DEAD++++ GF + I I+
Sbjct: 165 NEVQKLQAEAPHIVVGTPGRVYDMLNRKFLSSKYIKMFVLDEADEMLSRGFKDQIYEIFQ 224
Query: 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNP 245
+L Q++++SAT + L K+M +P +L++ E+ T L G++Q + +
Sbjct: 225 KLSTSIQVVLLSATMPAEVLDVTTKFMREPVRILVKKEELT--LEGIRQFYINVEK---- 278
Query: 246 SLRYVDEEKKLVQL--LSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQK 302
EE KL L L +T Q VIF N + + + + E + +F L G DQK
Sbjct: 279 ------EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQK 332
Query: 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR 362
R + F+ G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +
Sbjct: 333 DRDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 392
Query: 363 GLVITIVSAE 372
G+ I +V+ +
Sbjct: 393 GVAINMVTED 402
Score = 38 (18.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V +DK + E N + EM + NV+
Sbjct: 385 RGGRFGRKGVAINMVTEDDKRTLRDIETFYNTT--VEEMPM-NVA 426
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 516 (186.7 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 125/360 (34%), Positives = 205/360 (56%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+ F ++ L +
Sbjct: 35 DDMNLREALLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ- 93
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVERPKRPVQ--- 139
I + ++ Q ++LAPTRE+A QI VV ++G ++ H IGGT V + +Q
Sbjct: 94 IDVELKATQAMVLAPTRELAQQIQKVVLALGDYMGATCHA--CIGGTNVRNDVQKLQADV 151
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
IVVG+PGR+ M+ +YL+ +++F +DEAD++++ GF + I I+ +L Q+++
Sbjct: 152 PHIVVGTPGRVFDMLNRRYLSPKYIKMFALDEADEMLSRGFKDQIYEIFQKLATDTQVIL 211
Query: 198 VSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
+SAT + L K+M DP +L++ E+ T L G++Q + + EE K
Sbjct: 212 LSATMPQEVLEVTTKFMRDPVRILVKKEELT--LEGIRQFYINVEK----------EEWK 259
Query: 256 LVQL--LSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFK 312
L L L +T Q VIF N + + + + E + +F L G +QK R + F+
Sbjct: 260 LDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMEQKERDVIMKEFR 319
Query: 313 RGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I +++ +
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMITED 379
Score = 37 (18.1 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N + +DK + E N + EM + NV+
Sbjct: 362 RGGRFGRKGVAINMITEDDKRTLRDIETFYNTT--VEEMPM-NVA 403
>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
NextBio:20787456 Uniprot:E7F1G8
Length = 483
Score = 508 (183.9 bits), Expect = 4.8e-48, Sum P(2) = 4.8e-48
Identities = 130/385 (33%), Positives = 201/385 (52%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
RT DV + FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GT
Sbjct: 78 RTTDVTATKGNEFE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 136
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GKS +++ L + I L Q I+L PTRE+A+Q++ + ++ H+ + V GGT
Sbjct: 137 GKSGAYLIPLLER-IDLKKDYIQAIVLVPTRELALQVSQISINMSKHLGGIKVMATTGGT 195
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +++ +PGRI +IK +D V++ +MDEADKL++ FV I I
Sbjct: 196 NLRDDIMRLDEIVHVIIATPGRILDLIKKGVAKVDKVQMAVMDEADKLLSQDFVVLIEDI 255
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
S LP +Q+L+ SAT+ + K++ P I D L G+ Q A
Sbjct: 256 ISFLPKKRQILLYSATFPISVQKFMTKHLQKPYEINLMDELT-LKGITQYYA-------- 306
Query: 246 SLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQK 302
YV E +K L L S+ NQ +IF N R E++ + + + Y+ Q+
Sbjct: 307 ---YVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQE 363
Query: 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR 362
R F+ G R LV TDL RGID V++VIN + P +A TYLHR+GR+GRYG
Sbjct: 364 YRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHL 423
Query: 363 GLVITIVSAESLVKFHSLMGEINLD 387
GL I ++++E + ++ D
Sbjct: 424 GLAINLITSEDRFNLKGIEDQLMTD 448
Score = 42 (19.8 bits), Expect = 4.8e-48, Sum P(2) = 4.8e-48
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 1419 TSEDRLNFKG 1428
TSEDR N KG
Sbjct: 431 TSEDRFNLKG 440
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 517 (187.1 bits), Expect = 5.3e-48, P = 5.3e-48
Identities = 117/364 (32%), Positives = 203/364 (55%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ G + Q V+ +A+V S+SGTGK+ F
Sbjct: 34 VDVTPTFDTMGLREDLLRGIYAYGRPEPGAFQQRKILVVMKSNNAVVISQSGTGKTATFS 93
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
++ L + + + V++ Q +ILAPTRE+AVQI + ++G ++ N+ IGGT V R
Sbjct: 94 ISVL-QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIR 151
Query: 137 PVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ +V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 152 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 211
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
Q++++SAT H+ L K+M DP+ L++ ++ T L G+KQ + + ++
Sbjct: 212 TQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT--LEGIKQFFVAV---EREEWKF- 265
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 266 ---DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
F+ G R+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382
Query: 371 AESL 374
+ +
Sbjct: 383 NDDI 386
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 489 (177.2 bits), Expect = 5.8e-48, Sum P(3) = 5.8e-48
Identities = 123/422 (29%), Positives = 220/422 (52%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D+ ++ PI + L + G+ K SPIQ P++LNG D + +++G+GK+ F + L L
Sbjct: 10 DLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD 69
Query: 85 KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG----TQVERPKRPVQI 140
++ PQ ++LAPTRE+AVQ+ + + H++ ++V GG Q+ ++ QI
Sbjct: 70 P-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQI 128
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200
VVG+PGR+ +K L++ + ++DEAD+++ GF+ED+ I +Q+P Q + SA
Sbjct: 129 VVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSA 188
Query: 201 TYSHDNLATLQKYMVDPLLIRPEDA--TRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ 258
T +++M +P +R + + TRP + Q + +R + + LV+
Sbjct: 189 TMPEAIRRITRRFMKEPQEVRIQSSVTTRP--DISQSYWTVW-----GMR---KNEALVR 238
Query: 259 LLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRI 318
L F+ +IF + + E L + + L+G +Q R +L+ K G++ I
Sbjct: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298
Query: 319 LVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFH 378
L+ TD+AARG+D + LV+N +IP D+ +Y+HR+GR GR G G + V
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE----R 354
Query: 379 SLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEESSKVE 438
L+ N++ + + L ++ +R++ AK + Q E D++Q SK++
Sbjct: 355 RLLR--NIERTMKLTIPEVELPNAELLGKRRLEKFAAK-VQQQLESSDLDQYRALLSKIQ 411
Query: 439 NT 440
T
Sbjct: 412 PT 413
Score = 47 (21.6 bits), Expect = 5.8e-48, Sum P(3) = 5.8e-48
Identities = 24/81 (29%), Positives = 32/81 (39%)
Query: 911 LNTLGQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDERNGAYTGD----KGGRNRGHSV 966
+ LG + G GG RR G RN + + R G GD G R G +
Sbjct: 557 MQLLGDAQPHTGGERRGGGRGFGGERREGG-RNFSGERREGG-RGDGRRFSGERREGRA- 613
Query: 967 NSRKDHSFAGETPRSKGGFDS 987
R+D S T R + G D+
Sbjct: 614 -PRRDDS----TGRRRFGGDA 629
Score = 41 (19.5 bits), Expect = 6.2e-46, Sum P(2) = 6.2e-46
Identities = 18/73 (24%), Positives = 27/73 (36%)
Query: 782 ILNKHNNVAALFRSEDQSNSVRIGDNDG------TGNRSITRSKQNSQSGDHTDLKDSNR 835
ILNK N+ L ++ + R G G G R+ + ++ GD R
Sbjct: 550 ILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERR 609
Query: 836 PNA--NTDPSTGK 846
D STG+
Sbjct: 610 EGRAPRRDDSTGR 622
Score = 40 (19.1 bits), Expect = 5.8e-48, Sum P(3) = 5.8e-48
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 885 QSDSKPYGDRTKRRSRPRKNKENTDILNT-LGQD 917
++D P GDR R R R++ + + +G+D
Sbjct: 463 RNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRD 496
Score = 40 (19.1 bits), Expect = 7.9e-46, Sum P(2) = 7.9e-46
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 479 DGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDR 515
D +P G +RG R + +E +GE G R
Sbjct: 562 DAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGR 598
Score = 38 (18.4 bits), Expect = 5.1e-47, Sum P(3) = 5.1e-47
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 2215 RENTNSFRYLDNRVCGHKDAKSRYQGN 2241
R++ R++ + D SRY GN
Sbjct: 495 RDDGVEVRHIVGAIANEGDISSRYIGN 521
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 504 (182.5 bits), Expect = 6.1e-48, Sum P(2) = 6.1e-48
Identities = 121/333 (36%), Positives = 196/333 (58%)
Query: 48 QMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQIT 107
Q A P + GYD I Q++SGTGK+ F ++ L + I+L ++ Q ++LAPTRE+A QI
Sbjct: 77 QRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQ-IELDLKATQALVLAPTRELAQQIQ 134
Query: 108 DVVRSVGAHV-KNLHVDYFIGGTQVERPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDS 161
VV ++G ++ + H IGGT V + +Q I+VG+PGR+ M+ +YL+
Sbjct: 135 KVVMALGDYMGASCHA--CIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 192
Query: 162 VRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPL--L 219
+++F++DEAD++++ GF + I I+ +L Q++++SAT D L +K+M DP+ L
Sbjct: 193 IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRIL 252
Query: 220 IRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPE 279
++ E+ T L G++Q + E + L D L + L+ T Q VIF N + + +
Sbjct: 253 VKKEELT--LEGIRQFYINV-EREEWKL---DTLCDLYETLTIT---QAVIFINTRRKVD 303
Query: 280 VICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVIN 339
+ E + +F + G DQK R + F+ G R+L+TTDL ARGID V LVIN
Sbjct: 304 WLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 363
Query: 340 LEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
++P + Y+HR+GR GR+G +G+ I +V+ E
Sbjct: 364 YDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 396
Score = 45 (20.9 bits), Expect = 6.1e-48, Sum P(2) = 6.1e-48
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 1395 QGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVS 1439
+G R GR N V EDK + E N I EM L NV+
Sbjct: 379 RGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS--IEEMPL-NVA 420
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 514 (186.0 bits), Expect = 1.1e-47, P = 1.1e-47
Identities = 118/364 (32%), Positives = 201/364 (55%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 36 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 95
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDV--VRSVGAHVKNLHVDYFIGGTQVERP 134
++ L + + + V++ Q +ILAPTRE+AVQI V +S+ +K LH +V+ P
Sbjct: 96 ISVL-QCLDIQVRETQALILAPTRELAVQIQKVGTSKSLPVKMKELHKAMGSFKQEVDLP 154
Query: 135 K--RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
+ + G ++ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP
Sbjct: 155 AGHEVARCISGIQLQLLYMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 214
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
Q++++SAT H+ L K+M DP+ L++ ++ T L G+KQ + + ++
Sbjct: 215 TQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT--LEGIKQFFVAV---EREEWKF- 268
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
L L Q VIF N + + + + E + ANF + G QK R + +
Sbjct: 269 ---DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 325
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
F+ G R+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V
Sbjct: 326 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 385
Query: 371 AESL 374
+ +
Sbjct: 386 NDDI 389
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 484 (175.4 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 116/350 (33%), Positives = 192/350 (54%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
I + L+ENG + +PIQ A P +L+G D I Q+K+GTGK++ FV+ L K I
Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEK-IDPE 70
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVG 143
Q +I+APTRE+A+QIT ++ + ++++V GG V + R ++ IVV
Sbjct: 71 SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVA 130
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
+PGR+ I+ + +++ ++ ++DEAD+++ GF+ DI I + P KQ ++ SAT
Sbjct: 131 TPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIP 190
Query: 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQ-LVALIPECKNPSLRYVDEEKKLVQLLSQ 262
D ++YM +P +I+ + + ++Q ++ K +LR+V + +
Sbjct: 191 KDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQ------- 243
Query: 263 TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322
PF VIF ++R + +NL + L G Q R + SF+ K++ L+ T
Sbjct: 244 -PF-LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIAT 301
Query: 323 DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
D+AARG+D V V N +IP D +Y+HR+GR GR G GL IT V+A+
Sbjct: 302 DVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAK 351
Score = 62 (26.9 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 933 PERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNS-RKDHSFAGETPRSKGG 984
P ++S R RD R G+ +G KG R R S NS R +++ + P +K G
Sbjct: 390 PAPKKSGEYRQ--RDSREGSRSGSKG-RTRNDSRNSSRNENNRSFNKPSNKKG 439
Score = 43 (20.2 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 1097 KPGHRLQRNSKKRHSKISTERSNSNSAPREKSSDAKQAANEEENITGGNDENK 1149
KP + ++R S+ E S S S R ++ D++ ++ E N + NK
Sbjct: 389 KPAPKKSGEYRQRDSR---EGSRSGSKGRTRN-DSRNSSRNENNRSFNKPSNK 437
Score = 40 (19.1 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 1097 KPGHRLQRNSK---KRHSKISTERSNSNSAPREKSSDAKQAANEEENITGG 1144
K G QR+S+ + SK T + NS+ E + + +N++ + G
Sbjct: 394 KSGEYRQRDSREGSRSGSKGRTRNDSRNSSRNENNRSFNKPSNKKGSTKQG 444
Score = 40 (19.1 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 881 SSDY-QSDSKPYGDRTKRRSRPRKNKENTDIL-NTLGQDKTS-AHGRTPSGGHR 931
S +Y Q DS+ G R+ + R R + N+ N +K S G T G R
Sbjct: 395 SGEYRQRDSRE-GSRSGSKGRTRNDSRNSSRNENNRSFNKPSNKKGSTKQGQQR 447
Score = 39 (18.8 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 483 DENGS---QRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANSA 530
DENG + K+S E++ ++ G R SK + D NS+
Sbjct: 381 DENGKPLPKPAPKKSGEYRQRDS--------REGSRSGSKGRTRNDSRNSS 423
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 484 (175.4 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 116/350 (33%), Positives = 192/350 (54%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
I + L+ENG + +PIQ A P +L+G D I Q+K+GTGK++ FV+ L K I
Sbjct: 12 ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEK-IDPE 70
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVG 143
Q +I+APTRE+A+QIT ++ + ++++V GG V + R ++ IVV
Sbjct: 71 SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVA 130
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
+PGR+ I+ + +++ ++ ++DEAD+++ GF+ DI I + P KQ ++ SAT
Sbjct: 131 TPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIP 190
Query: 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQ-LVALIPECKNPSLRYVDEEKKLVQLLSQ 262
D ++YM +P +I+ + + ++Q ++ K +LR+V + +
Sbjct: 191 KDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQ------- 243
Query: 263 TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322
PF VIF ++R + +NL + L G Q R + SF+ K++ L+ T
Sbjct: 244 -PF-LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIAT 301
Query: 323 DLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
D+AARG+D V V N +IP D +Y+HR+GR GR G GL IT V+A+
Sbjct: 302 DVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAK 351
Score = 62 (26.9 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 933 PERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNS-RKDHSFAGETPRSKGG 984
P ++S R RD R G+ +G KG R R S NS R +++ + P +K G
Sbjct: 390 PAPKKSGEYRQ--RDSREGSRSGSKG-RTRNDSRNSSRNENNRSFNKPSNKKG 439
Score = 43 (20.2 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 1097 KPGHRLQRNSKKRHSKISTERSNSNSAPREKSSDAKQAANEEENITGGNDENK 1149
KP + ++R S+ E S S S R ++ D++ ++ E N + NK
Sbjct: 389 KPAPKKSGEYRQRDSR---EGSRSGSKGRTRN-DSRNSSRNENNRSFNKPSNK 437
Score = 40 (19.1 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 1097 KPGHRLQRNSK---KRHSKISTERSNSNSAPREKSSDAKQAANEEENITGG 1144
K G QR+S+ + SK T + NS+ E + + +N++ + G
Sbjct: 394 KSGEYRQRDSREGSRSGSKGRTRNDSRNSSRNENNRSFNKPSNKKGSTKQG 444
Score = 40 (19.1 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 881 SSDY-QSDSKPYGDRTKRRSRPRKNKENTDIL-NTLGQDKTS-AHGRTPSGGHR 931
S +Y Q DS+ G R+ + R R + N+ N +K S G T G R
Sbjct: 395 SGEYRQRDSRE-GSRSGSKGRTRNDSRNSSRNENNRSFNKPSNKKGSTKQGQQR 447
Score = 39 (18.8 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 483 DENGS---QRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANSA 530
DENG + K+S E++ ++ G R SK + D NS+
Sbjct: 381 DENGKPLPKPAPKKSGEYRQRDS--------REGSRSGSKGRTRNDSRNSS 423
>TAIR|locus:2147987 [details] [associations]
symbol:UAP56a "homolog of human UAP56 a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0009506
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046686
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL360314 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ010466 EMBL:AY052303
EMBL:BT001052 EMBL:AK221273 EMBL:AK221708 EMBL:AK226428
IPI:IPI00760330 IPI:IPI00760336 IPI:IPI00760344 PIR:T51343
RefSeq:NP_568244.2 RefSeq:NP_568245.1 UniGene:At.49007
UniGene:At.73904 ProteinModelPortal:Q56XG6 SMR:Q56XG6 IntAct:Q56XG6
STRING:Q56XG6 PRIDE:Q56XG6 EnsemblPlants:AT5G11170.1
EnsemblPlants:AT5G11200.1 GeneID:830986 GeneID:830990
KEGG:ath:AT5G11170 KEGG:ath:AT5G11200 GeneFarm:932 TAIR:At5g11170
InParanoid:Q56XG6 PhylomeDB:Q56XG6 ProtClustDB:CLSN2689601
Genevestigator:Q56XG6 Uniprot:Q56XG6
Length = 427
Score = 512 (185.3 bits), Expect = 1.8e-47, P = 1.8e-47
Identities = 126/356 (35%), Positives = 194/356 (54%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + ++GF S +Q P + G D I Q+KSG GK+ VFV++ L ++
Sbjct: 50 DFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIE 109
Query: 85 KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----- 139
P Q ++L TRE+A QI + ++ + V F GG ++ K ++
Sbjct: 110 PSP-GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPH 168
Query: 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVV 198
IVVG+PGR+ + + K L++ +VR FI+DE DK++ + D+ I+ P KQ+++
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
Query: 199 SATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKLV 257
SAT S + +K+M DP+ I +D + L G+ Q + E +++ +KL
Sbjct: 229 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE--------MEKNRKLN 280
Query: 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR 317
LL FNQ VIF R + + L NF + + Q+ RL SFK G R
Sbjct: 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKR 340
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373
ILV TDL RGID V++VIN ++P A TYLHR+GRAGR+GT+GL IT V++ S
Sbjct: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASAS 396
>DICTYBASE|DDB_G0269146 [details] [associations]
symbol:ifdA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269146
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0045335 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K03257 OMA:AVINYHI EMBL:U78759
RefSeq:XP_645917.1 ProteinModelPortal:P90529 STRING:P90529
PRIDE:P90529 EnsemblProtists:DDB0191262 GeneID:8616858
KEGG:ddi:DDB_G0269146 InParanoid:P90529 Uniprot:P90529
Length = 395
Score = 511 (184.9 bits), Expect = 2.3e-47, P = 2.3e-47
Identities = 124/357 (34%), Positives = 205/357 (57%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F+N + + K + +G+ GF K S IQ A + G+D I Q++SGTGK+ F V L+
Sbjct: 26 FDN-MELPKDLLRGIYSYGFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILS 84
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYF--IGGTQV----ERPK 135
+ I + V + Q +I+APTRE+A QI VV ++G + LH+ + IGGT++ + +
Sbjct: 85 R-IDISVLKCQALIIAPTRELAQQIQKVVLALGEY---LHIKSYACIGGTKITDDIQALQ 140
Query: 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195
V +VVG+PGR+ +M+ +N D++R+F +DEAD++++ GF + I I+ LP Q+
Sbjct: 141 SGVHVVVGTPGRVFEMLSRGIINRDTIRIFCLDEADEMLSRGFKDQIYEIFRFLPKTIQV 200
Query: 196 LVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEE 253
+ SAT + + L K+M +P +L++ ++ T L G++Q + + + +
Sbjct: 201 GLFSATMTDETLGITSKFMQNPVSILVKKDELT--LEGIRQFYVNVG-VEQGKFEVLTD- 256
Query: 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR 313
L + LS T Q VIF N + + + + + F G DQK R L +F+
Sbjct: 257 --LYETLSIT---QSVIFCNTRRKVDWLTSKMTEQKFTVSSTHG--DQKDRDGILQAFRS 309
Query: 314 GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
G R+L+TTDL ARGID V LVIN ++P + Y+HR+GR+GR+G +G+ I ++
Sbjct: 310 GATRVLITTDLLARGIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFIT 366
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 510 (184.6 bits), Expect = 2.9e-47, P = 2.9e-47
Identities = 154/530 (29%), Positives = 254/530 (47%)
Query: 40 GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99
GF + IQ P +L G D + ++++GTGK+ F + AL K I +++PQ ++LAPT
Sbjct: 34 GFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK-IDTSIKKPQLMVLAPT 92
Query: 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVGSPGRIKQMIKLK 155
RE+A+Q+ + + S G +K L V GG Q ++ +R Q+VVG+PGR+ ++ K
Sbjct: 93 RELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTPGRLMDHLRRK 152
Query: 156 YLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV 215
L +D +R+ ++DEAD+++N GF+EDI WI +P QM + SAT +++
Sbjct: 153 SLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATMPPAIRKIANRFLK 212
Query: 216 DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQ 275
DP I+ + VK+ A I + + + + L ++ ++ +IF +
Sbjct: 213 DPEHIK-------VAAVKKAKANITQYAW-KVSGITKMTALERIAEVVEYDAMIIFVRTR 264
Query: 276 LRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVD 335
I E L A + A L+G +Q R +D K GK ILV TD+ ARG+D +
Sbjct: 265 NDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDIPRIS 324
Query: 336 LVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEINLDHAFNVGLV 395
LVIN ++P D Y+HR+GR GR G G+ I V + N N L
Sbjct: 325 LVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLTN-GTVLNYDL- 382
Query: 396 PDNLTGDQINWTQRVQTLLAKPL---DQAQEREDVEQTAEES--SKVENTKPLRGAPSKE 450
P+ +I +R + +AK + D + RE VE A ES S ++ L K+
Sbjct: 383 PNIQDIGKIR-IERTRVEVAKIVADKDISSMREIVEGMAAESEVSMIDLAAALLF--QKQ 439
Query: 451 VTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQEKCVKGAGED 510
+ + KE K + + +D ND + G+ R S R + ++ + +G
Sbjct: 440 MKQPLQPKEDPKPRRDARERTDRNDRGNDR--NSRGNDRNS-RGNDSRSAGRDSRGGENR 496
Query: 511 ENGD---RKASKDEQKIDGANSAEKSLEDKHGKKITNSFEAVGEIVQNDT 557
N D RKA + +D + + +HG + + A+ + D+
Sbjct: 497 SNRDEKPRKAKVNRSDVDW-QTYRLEVGKEHGARPGDIVGAIANEISLDS 545
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 488 (176.8 bits), Expect = 4.4e-47, Sum P(2) = 4.4e-47
Identities = 128/398 (32%), Positives = 205/398 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV S FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GT
Sbjct: 86 KTSDVTSTKGNEFE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 144
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GKS +++ L +L L Q +++ PTRE+A+Q++ + V H+ V GGT
Sbjct: 145 GKSGAYLIPLLERL-DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 203
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +V+ +PGRI +IK +D V++ ++DEADKL++ FV+ + I
Sbjct: 204 NLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDI 263
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
LP +Q+L+ SAT+ + ++ P I E+ T L GV Q A
Sbjct: 264 ILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELT--LKGVTQYYA------- 314
Query: 245 PSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQ 301
YV E +K L L S+ NQ +IF N R E++ + ++ + Y+ Q
Sbjct: 315 ----YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ R F+ G R LV TDL RGID V++VIN + P A TYLHR+GR+GR+G
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGH 430
Query: 362 RGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
GL I +++ + S+ ++ + + +P N+
Sbjct: 431 LGLAINLITYDDRFNLKSIEEQLGTE----IKPIPSNI 464
Score = 53 (23.7 bits), Expect = 4.4e-47, Sum P(2) = 4.4e-47
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 1016 DLVVYDDAFDMFS----------PAANNLDE--YEIDYVEQPVDEKKS 1051
+L+ YDD F++ S P +N+D+ Y +Y +PV+++K+
Sbjct: 436 NLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEKA 483
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 508 (183.9 bits), Expect = 4.8e-47, P = 4.8e-47
Identities = 122/387 (31%), Positives = 211/387 (54%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
FEN + I++ + +G+ GF K S IQ +LNG D I+QS+SGTGK+ VF V ALN
Sbjct: 19 FEN-IGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALN 77
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYF--IGGTQ----VERPK 135
+ + + Q IIL+PTRE+A Q V ++ ++ HV + IGG + ++
Sbjct: 78 -CVNRNLNETQVIILSPTRELAEQTQKVCLALADYI---HVTIYCCIGGKKMSDDIKALN 133
Query: 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195
V ++ G+PGRI M+ L++L ++ ++DEAD+++N GF E + IY L P Q+
Sbjct: 134 NGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQI 193
Query: 196 LVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEE 253
++ SAT + L K+M P +L++ ++ T L G+KQ I + +Y
Sbjct: 194 ILSSATLPQEVLEITNKFMHKPVKILVKRDELT--LEGIKQFFVSI---EKEQWKY---- 244
Query: 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR 313
+ L L Q V+F N Q++ + + + + +NF + Q R + F++
Sbjct: 245 ETLADLYESLTITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQ 304
Query: 314 GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373
K R+L++TD+ RG+D V LV+N ++P+ +Y+HR+GR+GR+G +G+ I V +
Sbjct: 305 CKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDD 364
Query: 374 LVKFHSLMGEINLDHAFNVGLVPDNLT 400
+ ++ +I ++ + +P N+T
Sbjct: 365 I----KILRDIEQYYSTQIDEMPMNIT 387
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 508 (183.9 bits), Expect = 4.8e-47, P = 4.8e-47
Identities = 122/387 (31%), Positives = 211/387 (54%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
FEN + I++ + +G+ GF K S IQ +LNG D I+QS+SGTGK+ VF V ALN
Sbjct: 19 FEN-IGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALN 77
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYF--IGGTQ----VERPK 135
+ + + Q IIL+PTRE+A Q V ++ ++ HV + IGG + ++
Sbjct: 78 -CVNRNLNETQVIILSPTRELAEQTQKVCLALADYI---HVTIYCCIGGKKMSDDIKALN 133
Query: 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195
V ++ G+PGRI M+ L++L ++ ++DEAD+++N GF E + IY L P Q+
Sbjct: 134 NGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQI 193
Query: 196 LVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEE 253
++ SAT + L K+M P +L++ ++ T L G+KQ I + +Y
Sbjct: 194 ILSSATLPQEVLEITNKFMHKPVKILVKRDELT--LEGIKQFFVSI---EKEQWKY---- 244
Query: 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR 313
+ L L Q V+F N Q++ + + + + +NF + Q R + F++
Sbjct: 245 ETLADLYESLTITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQ 304
Query: 314 GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373
K R+L++TD+ RG+D V LV+N ++P+ +Y+HR+GR+GR+G +G+ I V +
Sbjct: 305 CKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDD 364
Query: 374 LVKFHSLMGEINLDHAFNVGLVPDNLT 400
+ ++ +I ++ + +P N+T
Sbjct: 365 I----KILRDIEQYYSTQIDEMPMNIT 387
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 503 (182.1 bits), Expect = 5.4e-47, Sum P(2) = 5.4e-47
Identities = 139/475 (29%), Positives = 238/475 (50%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ + + + ++ GF + +PIQ P L D I Q+++GTGK+ F + + K + +
Sbjct: 9 LSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK-VNVK 67
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVG 143
Q +++APTRE+A+Q+++ + +GA VK + V GG +ER R ++ ++VG
Sbjct: 68 NSAVQALVVAPTRELAIQVSEELYKIGA-VKRVRVLPIYGGQDIERQIRALKKHPHVIVG 126
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
+PGRI I L ++ V ++DEAD+++N GF+EDI I S +P +Q L+ SAT
Sbjct: 127 TPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMP 186
Query: 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK---LVQLL 260
+++M +P L++ VK +P + L V E+KK L +LL
Sbjct: 187 DPIRRIAERFMNEPELVK----------VKAKEMTVPNIQQYYLE-VHEKKKFDILTRLL 235
Query: 261 S-QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
Q P ++F + R + + E L + AE + G Q RL+ L FK G + IL
Sbjct: 236 DIQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEIL 294
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHS 379
V TD+AARG+D + V V N +IP D +Y+HR+GR GR G G+ +T V+ + + H
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHH 354
Query: 380 LMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEESSKVEN 439
+ E + P L + + QR+ + + + ++ AEE + +
Sbjct: 355 I--ERTTKRKME-RMKPPTLD-EALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEHD 410
Query: 440 TKPLRGAPSKEVTKKGASKEGTKWNLTDGQS-EEESDSENDGKPDENGSQRGSKR 493
+ + A K +T++ + T LT+ + + + G+PD + R KR
Sbjct: 411 SVTIVAACLKMLTRE---PDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKR 462
Score = 37 (18.1 bits), Expect = 5.4e-47, Sum P(2) = 5.4e-47
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 1886 EPESYDVSWRTCSSESAAREKNSGQRSRGSGDKAARK 1922
EP++ V + REK G R GS +K
Sbjct: 425 EPDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKK 461
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 488 (176.8 bits), Expect = 5.6e-47, Sum P(2) = 5.6e-47
Identities = 128/398 (32%), Positives = 205/398 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV S FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GT
Sbjct: 86 KTSDVTSTKGNEFE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 144
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GKS +++ L +L L Q +++ PTRE+A+Q++ + V H+ V GGT
Sbjct: 145 GKSGAYLIPLLERL-DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 203
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +V+ +PGRI +IK +D V++ ++DEADKL++ FV+ + I
Sbjct: 204 NLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDI 263
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
LP +Q+L+ SAT+ + ++ P I E+ T L GV Q A
Sbjct: 264 ILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELT--LKGVTQYYA------- 314
Query: 245 PSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQ 301
YV E +K L L S+ NQ +IF N R E++ + ++ + Y+ Q
Sbjct: 315 ----YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ R F+ G R LV TDL RGID V++VIN + P A TYLHR+GR+GR+G
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGH 430
Query: 362 RGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
GL I +++ + S+ ++ + + +P N+
Sbjct: 431 LGLAINLITYDDRFNLKSIEEQLGTE----IKPIPSNI 464
Score = 52 (23.4 bits), Expect = 5.6e-47, Sum P(2) = 5.6e-47
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 1016 DLVVYDDAFDMFS----------PAANNLDE--YEIDYVEQPVDEKK 1050
+L+ YDD F++ S P +N+D+ Y +Y +PV+++K
Sbjct: 436 NLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEK 482
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 488 (176.8 bits), Expect = 5.6e-47, Sum P(2) = 5.6e-47
Identities = 128/398 (32%), Positives = 205/398 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV S FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GT
Sbjct: 86 KTSDVTSTKGNEFE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 144
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GKS +++ L +L L Q +++ PTRE+A+Q++ + V H+ V GGT
Sbjct: 145 GKSGAYLIPLLERL-DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 203
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +V+ +PGRI +IK +D V++ ++DEADKL++ FV+ + I
Sbjct: 204 NLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDI 263
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
LP +Q+L+ SAT+ + ++ P I E+ T L GV Q A
Sbjct: 264 ILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELT--LKGVTQYYA------- 314
Query: 245 PSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQ 301
YV E +K L L S+ NQ +IF N R E++ + ++ + Y+ Q
Sbjct: 315 ----YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ R F+ G R LV TDL RGID V++VIN + P A TYLHR+GR+GR+G
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGH 430
Query: 362 RGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
GL I +++ + S+ ++ + + +P N+
Sbjct: 431 LGLAINLITYDDRFNLKSIEEQLGTE----IKPIPSNI 464
Score = 52 (23.4 bits), Expect = 5.6e-47, Sum P(2) = 5.6e-47
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 1016 DLVVYDDAFDMFS----------PAANNLDE--YEIDYVEQPVDEKK 1050
+L+ YDD F++ S P +N+D+ Y +Y +PV+++K
Sbjct: 436 NLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEK 482
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 488 (176.8 bits), Expect = 5.6e-47, Sum P(2) = 5.6e-47
Identities = 128/398 (32%), Positives = 205/398 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV S FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GT
Sbjct: 86 KTSDVTSTKGNEFE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 144
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GKS +++ L +L L Q +++ PTRE+A+Q++ + V H+ V GGT
Sbjct: 145 GKSGAYLIPLLERL-DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 203
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +V+ +PGRI +IK +D V++ ++DEADKL++ FV+ + I
Sbjct: 204 NLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDI 263
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
LP +Q+L+ SAT+ + ++ P I E+ T L GV Q A
Sbjct: 264 ILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELT--LKGVTQYYA------- 314
Query: 245 PSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQ 301
YV E +K L L S+ NQ +IF N R E++ + ++ + Y+ Q
Sbjct: 315 ----YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ R F+ G R LV TDL RGID V++VIN + P A TYLHR+GR+GR+G
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGH 430
Query: 362 RGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
GL I +++ + S+ ++ + + +P N+
Sbjct: 431 LGLAINLITYDDRFNLKSIEEQLGTE----IKPIPSNI 464
Score = 52 (23.4 bits), Expect = 5.6e-47, Sum P(2) = 5.6e-47
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 1016 DLVVYDDAFDMFS----------PAANNLDE--YEIDYVEQPVDEKK 1050
+L+ YDD F++ S P +N+D+ Y +Y +PV+++K
Sbjct: 436 NLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEK 482
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 507 (183.5 bits), Expect = 6.1e-47, P = 6.1e-47
Identities = 134/381 (35%), Positives = 206/381 (54%)
Query: 10 RTKDVLSNIDVLFEN-DVLIEKPIRQGLQEN--------GFVKESPIQMAAFPYVLNGYD 60
+ +VL D F + D + E GLQEN GF K S IQ G D
Sbjct: 19 KLNEVLEGQDEFFTSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD 78
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
I Q++SGTGK+ F L +L + Q Q ++LAPTRE+A QI V+R++G ++ +
Sbjct: 79 VIQQAQSGTGKTATFCSGVLQQL-DFSLIQCQALVLAPTRELAQQIEKVMRALGDYL-GV 136
Query: 121 HVDYFIGGTQVERPKRPVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176
V +GGT V +R +Q +VVG+PGR+ M+K + L D++++F++DEAD++++
Sbjct: 137 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSR 196
Query: 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQ 234
GF + I I+ LPP Q+ V SAT + L +K+M P +L++ ++ T L G+KQ
Sbjct: 197 GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELT--LEGIKQ 254
Query: 235 LVALIPECKNPSLRYVDEEKKLVQL--LSQT-PFNQCVIFSNYQLRPEVICENLANANFG 291
+ + EE KL L L +T Q VIF N + + + + + + + +
Sbjct: 255 FYVNVEK----------EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 304
Query: 292 AEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLH 351
G DQ R + F+ G R+L+TTDL ARGID V LVIN ++P YLH
Sbjct: 305 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
Query: 352 RMGRAGRYGTRGLVITIVSAE 372
R+GR+GR+G +G+ I V+ +
Sbjct: 365 RIGRSGRFGRKGVAINFVTRD 385
>POMBASE|SPBC776.09 [details] [associations]
symbol:ste13 "ATP-dependent RNA helicase Ste13"
species:4896 "Schizosaccharomyces pombe" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0030996 "cell cycle arrest in response to
nitrogen starvation" evidence=IMP] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IMP] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC776.09
GO:GO:0005524 GO:GO:0006417 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0031142 eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000290
OrthoDB:EOG4QJVWF EMBL:D29795 PIR:S46654 RefSeq:NP_596324.1
ProteinModelPortal:Q09181 SMR:Q09181 STRING:Q09181 PRIDE:Q09181
EnsemblFungi:SPBC776.09.1 GeneID:2541216 KEGG:spo:SPBC776.09
NextBio:20802328 GO:GO:0030996 Uniprot:Q09181
Length = 485
Score = 497 (180.0 bits), Expect = 7.0e-47, Sum P(2) = 7.0e-47
Identities = 130/393 (33%), Positives = 200/393 (50%)
Query: 2 AHDIQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDA 61
A + +T+DV FE D +++ + G+ E GF + SPIQ + P L+G D
Sbjct: 26 AQPVDMRPKTEDVTKTRGTEFE-DYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDI 84
Query: 62 IVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121
+ ++K+GTGK+ FV+ +L K + + QT+IL PTRE+A+Q + V +++G H+ N+
Sbjct: 85 LARAKNGTGKTAAFVIPSLEK-VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHM-NVK 142
Query: 122 VDYFIGGTQVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTG 177
V GGT + R V IVVG+PGR+ + + F+MDEADKL++
Sbjct: 143 VMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPE 202
Query: 178 FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA 237
F I + S P +Q+ + SAT+ + K++ P I D L GV Q A
Sbjct: 203 FTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINLMDELT-LRGVTQYYA 261
Query: 238 LIPECKNPSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
+VDE +K L L S+ NQ +IF N R E++ + + + Y
Sbjct: 262 -----------FVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFY 310
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
Q R +F+ G R LV +DL RGID V++VIN + P +A TYLHR+G
Sbjct: 311 SHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIG 370
Query: 355 RAGRYGTRGLVITIVSAESLVKFHSLMGEINLD 387
R+GR+G RGL I+ +S + + E+ +
Sbjct: 371 RSGRFGHRGLAISFISWADRFNLYRIENELGTE 403
Score = 42 (19.8 bits), Expect = 7.0e-47, Sum P(2) = 7.0e-47
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 934 ERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSFAGE 977
+ + +G N + R G +GG NRG S + + G+
Sbjct: 441 QAKGQEGYHNRPNNNRGGH---PRGGGNRGGYRQSNRQPRYRGQ 481
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 506 (183.2 bits), Expect = 7.8e-47, P = 7.8e-47
Identities = 130/387 (33%), Positives = 210/387 (54%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
FE+ L + +R G+ GF S IQ A +++G D I Q++SGTGK+ F + L
Sbjct: 25 FESMNLKDDLLR-GIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL- 82
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE-----RPKR 136
+ I L + Q +IL+PTRE+A QI VV+++G ++ N++ GG ++ K
Sbjct: 83 QAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKH 141
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT--GFVEDITWIYSQLPPMKQ 194
Q V G+PGR+ MIK + L +V++ ++DEAD+L++ GF + I I+++LP Q
Sbjct: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201
Query: 195 MLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254
++VVSAT + D L +K+M DP+ I + L G+KQ V + + EE
Sbjct: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDK----------EEW 251
Query: 255 K---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSF 311
K L + QCVIF N + + + + + L +NF + G Q+ R ++ F
Sbjct: 252 KFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDF 311
Query: 312 KRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA 371
+ G R+L++TD+ ARGID V LVIN ++P Y+HR+GR+GR+G +G+ I ++
Sbjct: 312 RTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371
Query: 372 ESLVKFHSLMGEINLDHAFNVGLVPDN 398
L K EI ++ + +P N
Sbjct: 372 ADLAKLR----EIEKFYSIKINPMPAN 394
>TAIR|locus:2020078 [details] [associations]
symbol:EIF4A-2 "eif4a-2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0009651 "response to
salt stress" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005774 GO:GO:0046686 EMBL:AC005287
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 EMBL:X65053
EMBL:AF386923 EMBL:AF428462 EMBL:BT008504 EMBL:AK226344
EMBL:AY087965 IPI:IPI00522023 PIR:JC1453 RefSeq:NP_175829.1
UniGene:At.195 ProteinModelPortal:P41377 SMR:P41377 STRING:P41377
PaxDb:P41377 PRIDE:P41377 ProMEX:P41377 EnsemblPlants:AT1G54270.1
GeneID:841868 KEGG:ath:AT1G54270 GeneFarm:936 TAIR:At1g54270
InParanoid:P41377 OMA:QVVWEEN PhylomeDB:P41377
ProtClustDB:CLSN2679594 Genevestigator:P41377 GermOnline:AT1G54270
Uniprot:P41377
Length = 412
Score = 506 (183.2 bits), Expect = 7.8e-47, P = 7.8e-47
Identities = 131/378 (34%), Positives = 203/378 (53%)
Query: 10 RTKDVLSNIDVLFEN-DVLIEKPIRQGLQEN--------GFVKESPIQMAAFPYVLNGYD 60
R +VL D F + D + E GLQEN GF K S IQ G D
Sbjct: 19 RLNEVLDGQDEFFTSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD 78
Query: 61 AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNL 120
I Q++SGTGK+ F L +L + Q Q ++LAPTRE+A QI V+R++G + + +
Sbjct: 79 VIQQAQSGTGKTATFCSGVLQQL-DYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGV 136
Query: 121 HVDYFIGGTQVERPKRPVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176
V +GGT V +R +Q +VVG+PGR+ M++ + L D +++F++DEAD++++
Sbjct: 137 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSR 196
Query: 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQ 234
GF + I I+ LPP Q+ V SAT + L +K+M P +L++ ++ T L G+KQ
Sbjct: 197 GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELT--LEGIKQ 254
Query: 235 LVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEY 294
+ E ++ L + L L Q VIF N + + + + + + + +
Sbjct: 255 FYVNV-EKEDWKL------ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSA 307
Query: 295 LSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMG 354
G DQ R + F+ G R+L+TTDL ARGID V LVIN ++P YLHR+G
Sbjct: 308 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIG 367
Query: 355 RAGRYGTRGLVITIVSAE 372
R+GR+G +G+ I V+ +
Sbjct: 368 RSGRFGRKGVAINFVTLD 385
>TAIR|locus:2008296 [details] [associations]
symbol:AT1G51380 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005730 EMBL:AC024261
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 EMBL:AC006085 KO:K13025
EMBL:AY058890 EMBL:AY079046 IPI:IPI00529522 PIR:H96551
RefSeq:NP_175549.1 UniGene:At.11244 ProteinModelPortal:Q9C8J1
SMR:Q9C8J1 PaxDb:Q9C8J1 PRIDE:Q9C8J1 EnsemblPlants:AT1G51380.1
GeneID:841562 KEGG:ath:AT1G51380 GeneFarm:1010 TAIR:At1g51380
InParanoid:Q9C8J1 OMA:DITNITH PhylomeDB:Q9C8J1
ProtClustDB:CLSN2912843 Genevestigator:Q9C8J1 GermOnline:AT1G51380
Uniprot:Q9C8J1
Length = 392
Score = 498 (180.4 bits), Expect = 8.8e-47, Sum P(2) = 8.8e-47
Identities = 111/357 (31%), Positives = 201/357 (56%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+ + + +G+ + G+ K S IQ A +L G D I Q++SGTGK+ + ++ ++
Sbjct: 25 DDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVC-QI 83
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQV----ERPKRPVQ 139
+ + ++ Q ++L+P+RE+A Q ++++GAH N+ IGG + ++ +R V
Sbjct: 84 VNISSRKVQVLVLSPSRELASQTEKTIQAIGAHT-NIQAHACIGGKSIGEDIKKLERGVH 142
Query: 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVS 199
V G+PGR+ MIK L +V+L ++DE+D++++ G + I +Y LP Q+ ++S
Sbjct: 143 AVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLIS 202
Query: 200 ATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257
AT + L +K+M DP +L++P++ T L G+KQ + ++ L
Sbjct: 203 ATLPQEILEMTEKFMTDPVRILVKPDELT--LEGIKQYYV---DVDKEEWKF----DTLC 253
Query: 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR 317
L + NQ +IF N + + + + E + ++NF + G + QK R ++ F+ K R
Sbjct: 254 DLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSR 313
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
+L+ +D+ ARGID V VIN +IP++ Y+HR+GRAGR+G G+ I V + +
Sbjct: 314 VLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDM 370
Score = 40 (19.1 bits), Expect = 8.8e-47, Sum P(2) = 8.8e-47
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 661 EKESVNNVESKDERPPSTANNPDGTEWEDIPSDTI 695
E ++N V+S D + GT+ ++P+D +
Sbjct: 358 EGVAINFVKSSDMKDLKDIERHYGTKIREMPADLV 392
>UNIPROTKB|Q5WR10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9615 "Canis lupus familiaris" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784
"intronless viral mRNA export from host nucleus" evidence=IEA]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA]
[GO:0030621 "U4 snRNA binding" evidence=IEA] [GO:0017070 "U6 snRNA
binding" evidence=IEA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:AY423389
RefSeq:NP_001014399.1 UniGene:Cfa.10131 ProteinModelPortal:Q5WR10
SMR:Q5WR10 Ensembl:ENSCAFT00000036511 GeneID:474839 KEGG:cfa:474839
InParanoid:Q5WR10 NextBio:20850784 Uniprot:Q5WR10
Length = 428
Score = 505 (182.8 bits), Expect = 1.0e-46, P = 1.0e-46
Identities = 127/383 (33%), Positives = 205/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +L
Sbjct: 49 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE 108
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ N+ V F GG +++ + ++
Sbjct: 109 --PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ I +D T+ L G++Q + + N ++ +KL
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--N------EKNRKL 278
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 279 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 338
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 398
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ N+ +PD +
Sbjct: 399 ---ILNDVQDRFEVNISELPDEI 418
>UNIPROTKB|Q13838 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0000346 "transcription export complex"
evidence=IDA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=IDA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA]
[GO:0000245 "spliceosomal complex assembly" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0043008
"ATP-dependent protein binding" evidence=IDA] [GO:0005687 "U4
snRNP" evidence=IDA] [GO:0005688 "U6 snRNP" evidence=IDA]
[GO:0030621 "U4 snRNA binding" evidence=IDA] [GO:0017070 "U6 snRNA
binding" evidence=IDA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 EMBL:BA000025 EMBL:CH471081
GO:GO:0016607 GO:GO:0005681 TCDB:3.A.18.1.1 EMBL:AL662847
EMBL:AL662801 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_BAT1 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX CTD:7919 KO:K12812
GO:GO:0000346 GO:GO:0030621 GO:GO:0046784 EMBL:Z37166 EMBL:BT009909
EMBL:AK222912 EMBL:AB088115 EMBL:AB103621 EMBL:AB202112
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 EMBL:BC000361 EMBL:BC013006 EMBL:AF029061
EMBL:AF029062 IPI:IPI00641829 IPI:IPI00848161 PIR:I37201
RefSeq:NP_004631.1 RefSeq:NP_542165.1 UniGene:Hs.254042
UniGene:Hs.730849 PDB:1T5I PDB:1T6N PDB:1XTI PDB:1XTJ PDB:1XTK
PDBsum:1T5I PDBsum:1T6N PDBsum:1XTI PDBsum:1XTJ PDBsum:1XTK
ProteinModelPortal:Q13838 SMR:Q13838 IntAct:Q13838
MINT:MINT-1032422 STRING:Q13838 PhosphoSite:Q13838 DMDM:2500529
PaxDb:Q13838 PRIDE:Q13838 DNASU:7919 Ensembl:ENST00000383508
Ensembl:ENST00000396172 Ensembl:ENST00000400295
Ensembl:ENST00000400296 Ensembl:ENST00000412106
Ensembl:ENST00000412330 Ensembl:ENST00000413678
Ensembl:ENST00000414440 Ensembl:ENST00000415689
Ensembl:ENST00000416863 Ensembl:ENST00000430784
Ensembl:ENST00000431360 Ensembl:ENST00000441425
Ensembl:ENST00000445218 Ensembl:ENST00000448296
Ensembl:ENST00000453138 Ensembl:ENST00000456476
Ensembl:ENST00000456666 Ensembl:ENST00000458640 GeneID:7919
KEGG:hsa:7919 UCSC:uc003ntt.3 GeneCards:GC06M031500 HGNC:HGNC:13917
HPA:CAB034012 MIM:142560 neXtProt:NX_Q13838 PharmGKB:PA25262
InParanoid:Q13838 PhylomeDB:Q13838 ChiTaRS:DDX39B
EvolutionaryTrace:Q13838 GenomeRNAi:7919 NextBio:30405
ArrayExpress:Q13838 Bgee:Q13838 Genevestigator:Q13838
GermOnline:ENSG00000198563 GO:GO:0043008 Uniprot:Q13838
Length = 428
Score = 505 (182.8 bits), Expect = 1.0e-46, P = 1.0e-46
Identities = 127/383 (33%), Positives = 205/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +L
Sbjct: 49 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE 108
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ N+ V F GG +++ + ++
Sbjct: 109 --PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ I +D T+ L G++Q + + N ++ +KL
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--N------EKNRKL 278
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 279 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 338
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 398
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ N+ +PD +
Sbjct: 399 ---ILNDVQDRFEVNISELPDEI 418
>UNIPROTKB|Q29024 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784 "intronless viral
mRNA export from host nucleus" evidence=IEA] [GO:0043008
"ATP-dependent protein binding" evidence=IEA] [GO:0030621 "U4 snRNA
binding" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005687 "U4 snRNP"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0016607
GO:GO:0005681 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000245 GO:GO:0004004 EMBL:AJ251914 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:Z34846 PIR:I47126
RefSeq:NP_001005157.1 UniGene:Ssc.11719 ProteinModelPortal:Q29024
SMR:Q29024 STRING:Q29024 PRIDE:Q29024 Ensembl:ENSSSCT00000001529
GeneID:448813 KEGG:ssc:448813 ArrayExpress:Q29024 Uniprot:Q29024
Length = 428
Score = 505 (182.8 bits), Expect = 1.0e-46, P = 1.0e-46
Identities = 127/383 (33%), Positives = 205/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +L
Sbjct: 49 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE 108
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ N+ V F GG +++ + ++
Sbjct: 109 --PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ I +D T+ L G++Q + + N ++ +KL
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--N------EKNRKL 278
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 279 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 338
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 398
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ N+ +PD +
Sbjct: 399 ---ILNDVQDRFEVNISELPDEI 418
>MGI|MGI:99240 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=ISO] [GO:0000346 "transcription export complex"
evidence=ISO] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006406 "mRNA
export from nucleus" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=ISO] [GO:0030621 "U4 snRNA binding" evidence=ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:99240 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:AF118128 EMBL:AY255786 EMBL:AY255787
EMBL:AC007080 EMBL:AK088867 EMBL:AK051034 EMBL:BC011067
EMBL:BC024859 IPI:IPI00409462 RefSeq:NP_001239386.1
RefSeq:NP_062667.1 UniGene:Mm.439827 ProteinModelPortal:Q9Z1N5
SMR:Q9Z1N5 IntAct:Q9Z1N5 STRING:Q9Z1N5 PhosphoSite:Q9Z1N5
PaxDb:Q9Z1N5 PRIDE:Q9Z1N5 Ensembl:ENSMUST00000068056
Ensembl:ENSMUST00000172549 Ensembl:ENSMUST00000173731 GeneID:53817
KEGG:mmu:53817 InParanoid:Q9Z1N5 NextBio:310679 Bgee:Q9Z1N5
CleanEx:MM_BAT1A Genevestigator:Q9Z1N5 Uniprot:Q9Z1N5
Length = 428
Score = 505 (182.8 bits), Expect = 1.0e-46, P = 1.0e-46
Identities = 127/383 (33%), Positives = 205/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +L
Sbjct: 49 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE 108
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ N+ V F GG +++ + ++
Sbjct: 109 --PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ I +D T+ L G++Q + + N ++ +KL
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--N------EKNRKL 278
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 279 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 338
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 398
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ N+ +PD +
Sbjct: 399 ---ILNDVQDRFEVNISELPDEI 418
>RGD|70923 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10116 "Rattus norvegicus" [GO:0000245 "spliceosomal complex
assembly" evidence=IEA;ISO] [GO:0000346 "transcription export
complex" evidence=IEA;ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005687 "U4 snRNP" evidence=IEA;ISO]
[GO:0005688 "U6 snRNP" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=IEA;ISO] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=IEA;ISO] [GO:0030621 "U4 snRNA binding" evidence=IEA;ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA;ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:70923 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:M75168 EMBL:AF387339 EMBL:AJ314857 EMBL:BC080243
IPI:IPI00215291 PIR:A42811 RefSeq:NP_579834.2 UniGene:Rn.202950
ProteinModelPortal:Q63413 SMR:Q63413 STRING:Q63413
World-2DPAGE:0004:Q63413 PRIDE:Q63413 Ensembl:ENSRNOT00000001115
GeneID:114612 KEGG:rno:114612 UCSC:RGD:70923 InParanoid:Q63413
NextBio:618775 ArrayExpress:Q63413 Genevestigator:Q63413
GermOnline:ENSRNOG00000000841 Uniprot:Q63413
Length = 428
Score = 505 (182.8 bits), Expect = 1.0e-46, P = 1.0e-46
Identities = 127/383 (33%), Positives = 205/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +L
Sbjct: 49 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE 108
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ N+ V F GG +++ + ++
Sbjct: 109 --PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ I +D T+ L G++Q + + N ++ +KL
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--N------EKNRKL 278
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 279 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 338
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 398
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ N+ +PD +
Sbjct: 399 ---ILNDVQDRFEVNISELPDEI 418
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 490 (177.5 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 136/508 (26%), Positives = 247/508 (48%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-- 85
+ P+++ + E G+ SPIQ A P VL G D + +++GTGK+ F + L L K
Sbjct: 8 LSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAKGH 67
Query: 86 -LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQI 140
Q + ++L PTRE+A Q+ + V + G ++ L GG Q+ + + V +
Sbjct: 68 KAKSGQTRALVLTPTRELAAQVGESVETYGKYLP-LRSAVVFGGVPINPQINKLRHGVDV 126
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200
+V +PGR+ +++ + + + + ++DEAD++++ GF+ DI I + LP +Q L+ SA
Sbjct: 127 LVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSA 186
Query: 201 TYSHDNLATLQKYMVD-PLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL 259
T+S D + L K +V+ P+ I VKQ + + + + +L L+QL
Sbjct: 187 TFS-DEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSAL--------LIQL 237
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
+ Q + Q ++FS + + ++L A A + G + Q AR +L FK G+VR+L
Sbjct: 238 IKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHS 379
V TD+AARG+D + V+N ++P+ Y+HR+GR GR G G +++VS+E +
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357
Query: 380 LMGEIN--LDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEESSKV 437
+ IN L+ G P + + Q T + K + ++ + A S
Sbjct: 358 IERLINRVLERQEVEGFSPVHALPETTLNPQGKDTKV-KAVANHRKHRSAGKPAPRSGSG 416
Query: 438 ENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEF 497
+T+ R ++ +S+ + N T+ + S P +G S +
Sbjct: 417 RDTQGNRENSQRQ--NSASSRNSNEHNNTEA-AVARSPKPKSKHPQRDGGTANSATAGN- 472
Query: 498 KTQEKCVKGAGEDENGDR--KASKDEQK 523
+ K GA + + +R K++ D ++
Sbjct: 473 NAKAKPHSGAQQRSHAERSEKSNNDGRR 500
Score = 47 (21.6 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 14/59 (23%), Positives = 21/59 (35%)
Query: 888 SKPYGDRTKRRSRPRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSDGVRNDTR 946
+KP+ +R R K N D G+ + GR P + + R D R
Sbjct: 476 AKPHSGAQQRSHAERSEKSNND-----GRRQEQPKGRNPQSAKPASNQPKQHSHRADNR 529
Score = 42 (19.8 bits), Expect = 3.8e-46, Sum P(2) = 3.8e-46
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 1095 KLKPGHRLQRNSKKRHSKISTERSNSNSAPREKS-SDAKQAANE 1137
K KP Q+ S S+ S P+ ++ AK A+N+
Sbjct: 475 KAKPHSGAQQRSHAERSEKSNNDGRRQEQPKGRNPQSAKPASNQ 518
Score = 38 (18.4 bits), Expect = 1.0e-45, Sum P(2) = 1.0e-45
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 2130 PARGLPMRSHFHGVKRSNHCDRK---PRG 2155
P G RSH ++SN+ R+ P+G
Sbjct: 478 PHSGAQQRSHAERSEKSNNDGRRQEQPKG 506
>ASPGD|ASPL0000036135 [details] [associations]
symbol:AN10417 species:162425 "Emericella nidulans"
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
cycle arrest in response to nitrogen starvation" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
Length = 498
Score = 504 (182.5 bits), Expect = 1.3e-46, P = 1.3e-46
Identities = 148/477 (31%), Positives = 234/477 (49%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T+DV + + FE D I++ + G+ E GF K SPIQ P L G D + ++K+GT
Sbjct: 29 QTEDVTATKGLEFE-DFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGT 87
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ FV+ L + I + Q +IL PTRE+A+Q + V +++G H+ ++V GGT
Sbjct: 88 GKTAAFVIPTLER-INPKSTKTQALILVPTRELALQTSHVCKTLGKHL-GINVMVTTGGT 145
Query: 130 ----QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V I+VG+PGR+ + ++ F+MDEADKL++ F I +
Sbjct: 146 GLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQL 205
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
S P +Q+++ SAT+ + ++M +P I D L G+ Q A
Sbjct: 206 LSFHPKDRQVMLFSATFPMIVKSFKDRHMRNPYEINLMDELT-LRGITQYYA-------- 256
Query: 246 SLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQK 302
+V+E++K L L S+ NQ +IF N R E++ + + + Y Q+
Sbjct: 257 ---FVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQ 313
Query: 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR 362
R F+ G R LV +DL RGID V++VIN + P +A TYLHR+GR+GR+G
Sbjct: 314 HRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 373
Query: 363 GLVITIVSAE---SLVKFHSLMG-EI-----NLDHAFNVGLVPDNLTGDQINWTQRVQTL 413
GL I +++ + +L K +G EI N+D V PD + N Q+ Q
Sbjct: 374 GLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLYVYDSPDTIPRPISNPPQQSQGA 433
Query: 414 LAKPLDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQS 470
A +R T + + P RG + ++ +GTK+N GQ+
Sbjct: 434 TAA--SNPSDRRHNHHTNGGHYQSKGRGPYRGGRGQG-QRRNMQNDGTKFNAAQGQT 487
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 488 (176.8 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 128/398 (32%), Positives = 205/398 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV S FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GT
Sbjct: 86 KTSDVTSTKGNEFE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 144
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GKS +++ L +L L Q +++ PTRE+A+Q++ + V H+ V GGT
Sbjct: 145 GKSGAYLIPLLERL-DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 203
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +V+ +PGRI +IK +D V++ ++DEADKL++ FV+ + I
Sbjct: 204 NLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDI 263
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
LP +Q+L+ SAT+ + ++ P I E+ T L GV Q A
Sbjct: 264 ILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELT--LKGVTQYYA------- 314
Query: 245 PSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQ 301
YV E +K L L S+ NQ +IF N R E++ + ++ + Y+ Q
Sbjct: 315 ----YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ R F+ G R LV TDL RGID V++VIN + P A TYLHR+GR+GR+G
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGH 430
Query: 362 RGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
GL I +++ + S+ ++ + + +P N+
Sbjct: 431 LGLAINLITYDDRFNLKSIEEQLGTE----IKPIPSNI 464
Score = 48 (22.0 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 1016 DLVVYDDAFDMFS----------PAANNLDE--YEIDYVEQPVDEKK 1050
+L+ YDD F++ S P +N+D+ Y +Y +P +++K
Sbjct: 436 NLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEK 482
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 488 (176.8 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 128/398 (32%), Positives = 205/398 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV S FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GT
Sbjct: 86 KTSDVTSTKGNEFE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 144
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GKS +++ L +L L Q +++ PTRE+A+Q++ + V H+ V GGT
Sbjct: 145 GKSGAYLIPLLERL-DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 203
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +V+ +PGRI +IK +D V++ ++DEADKL++ FV+ + I
Sbjct: 204 NLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDI 263
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
LP +Q+L+ SAT+ + ++ P I E+ T L GV Q A
Sbjct: 264 ILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELT--LKGVTQYYA------- 314
Query: 245 PSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQ 301
YV E +K L L S+ NQ +IF N R E++ + ++ + Y+ Q
Sbjct: 315 ----YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ R F+ G R LV TDL RGID V++VIN + P A TYLHR+GR+GR+G
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGH 430
Query: 362 RGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
GL I +++ + S+ ++ + + +P N+
Sbjct: 431 LGLAINLITYDDRFNLKSIEEQLGTE----IKPIPSNI 464
Score = 48 (22.0 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 1016 DLVVYDDAFDMFS----------PAANNLDE--YEIDYVEQPVDEKK 1050
+L+ YDD F++ S P +N+D+ Y +Y +P +++K
Sbjct: 436 NLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEK 482
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 484 (175.4 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 127/398 (31%), Positives = 205/398 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV S FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GT
Sbjct: 86 KTSDVTSTKGNEFE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 144
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GKS +++ L +L L Q +++ PTRE+A+Q++ + V H+ V GGT
Sbjct: 145 GKSGAYLIPLLERL-DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 203
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +V+ +PGRI +IK ++ V++ ++DEADKL++ FV+ + I
Sbjct: 204 NLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDI 263
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
LP +Q+L+ SAT+ + ++ P I E+ T L GV Q A
Sbjct: 264 ILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELT--LKGVTQYYA------- 314
Query: 245 PSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQ 301
YV E +K L L S+ NQ +IF N R E++ + ++ + Y+ Q
Sbjct: 315 ----YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ R F+ G R LV TDL RGID V++VIN + P A TYLHR+GR+GR+G
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGH 430
Query: 362 RGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
GL I +++ + S+ ++ + + +P N+
Sbjct: 431 LGLAINLITYDDRFNLKSIEEQLGTE----IKPIPSNI 464
Score = 52 (23.4 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 1016 DLVVYDDAFDMFS----------PAANNLDE--YEIDYVEQPVDEKK 1050
+L+ YDD F++ S P +N+D+ Y +Y +PV+++K
Sbjct: 436 NLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEK 482
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 502 (181.8 bits), Expect = 2.1e-46, P = 2.1e-46
Identities = 125/385 (32%), Positives = 200/385 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
RT+DV + FE D +++ + G+ E GF + SPIQ + P L G D + ++K+GT
Sbjct: 121 RTEDVTATKGNEFE-DYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGT 179
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ F + L K I Q +I+ PTRE+A+Q + V + +G H+K + V GGT
Sbjct: 180 GKTAAFCIPVLEK-IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGT 237
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
++ R +PV ++VG+PGRI + K + + +MDEADKL++ F + +
Sbjct: 238 SLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHL 297
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
S LP +Q+L+ SAT+ +++ +P +I D L G+ Q A
Sbjct: 298 ISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELT-LKGITQFYA-------- 348
Query: 246 SLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQK 302
+V+E +K L L S+ NQ +IF N R E++ + + + Y+ Q
Sbjct: 349 ---FVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQD 405
Query: 303 ARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTR 362
R F+ G R LV TDL RGID V++VIN + P +A TYLHR+GR+GR+G
Sbjct: 406 HRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHL 465
Query: 363 GLVITIVSAESLVKFHSLMGEINLD 387
GL + +++ E + + E+ +
Sbjct: 466 GLAVNLITYEDRFNLYRIEQELGTE 490
>ZFIN|ZDB-GENE-040426-2902 [details] [associations]
symbol:ddx39ab "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39Ab" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-2902 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOVERGEN:HBG107334 KO:K13182 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 OMA:WANCVIS CTD:7919 EMBL:FP101915
EMBL:BC044169 EMBL:BC067555 EMBL:BC128804 EMBL:BX248081
IPI:IPI00631848 RefSeq:NP_998142.1 UniGene:Dr.75872 SMR:Q803W0
STRING:Q803W0 Ensembl:ENSDART00000019957 GeneID:406249
KEGG:dre:406249 InParanoid:Q803W0 NextBio:20817884 Uniprot:Q803W0
Length = 427
Score = 502 (181.8 bits), Expect = 2.1e-46, P = 2.1e-46
Identities = 127/383 (33%), Positives = 207/383 (54%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L ++
Sbjct: 48 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIE 107
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ + V F GG +++ + ++
Sbjct: 108 --PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMSIKKDEDVLKKSCP 165
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI +++ K LN+ +V+ F++DE DK++ D+ I+ P KQ ++
Sbjct: 166 HIVVGTPGRILALVRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMM 225
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ + +D T+ L G++Q CK L+ ++ +KL
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY-----CK---LKDNEKNRKL 277
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 278 FDLLDVLEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQR 337
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++V N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAK 397
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ NV +P+ +
Sbjct: 398 ---ILNDVQDRFEVNVAELPEEI 417
>UNIPROTKB|Q5ZHZ0 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334
EMBL:AJ720994 IPI:IPI00585240 ProteinModelPortal:Q5ZHZ0 SMR:Q5ZHZ0
Uniprot:Q5ZHZ0
Length = 428
Score = 500 (181.1 bits), Expect = 3.4e-46, P = 3.4e-46
Identities = 127/383 (33%), Positives = 205/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +L
Sbjct: 49 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE 108
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ ++ V F GG V++ + ++
Sbjct: 109 --PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCP 166
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ I +D T+ L G++Q + + N ++ +KL
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--N------EKNRKL 278
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 279 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 338
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 398
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ N+ +PD +
Sbjct: 399 ---ILNDVQDRFEVNISELPDEI 418
>UNIPROTKB|Q3T147 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9913 "Bos taurus" [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0043008 "ATP-dependent protein
binding" evidence=IEA] [GO:0030621 "U4 snRNA binding" evidence=IEA]
[GO:0017070 "U6 snRNA binding" evidence=IEA] [GO:0010501 "RNA
secondary structure unwinding" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0000346 "transcription export
complex" evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 GO:GO:0006406 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000245
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010501 GO:GO:0017070 HSSP:Q5STU4 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 EMBL:BC102131
IPI:IPI00690141 RefSeq:NP_001028801.1 UniGene:Bt.4945
ProteinModelPortal:Q3T147 SMR:Q3T147 STRING:Q3T147 PRIDE:Q3T147
Ensembl:ENSBTAT00000029090 GeneID:540191 KEGG:bta:540191 CTD:7919
InParanoid:Q3T147 KO:K12812 OMA:NAENPAI NextBio:20878478
ArrayExpress:Q3T147 GO:GO:0000346 GO:GO:0005687 GO:GO:0005688
GO:GO:0030621 GO:GO:0046784 Uniprot:Q3T147
Length = 428
Score = 500 (181.1 bits), Expect = 3.4e-46, P = 3.4e-46
Identities = 126/383 (32%), Positives = 205/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +L
Sbjct: 49 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE 108
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ ++ V F GG +++ + ++
Sbjct: 109 --PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCP 166
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ I +D T+ L G++Q + + N ++ +KL
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--N------EKNRKL 278
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 279 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 338
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 398
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ N+ +PD +
Sbjct: 399 ---ILNDVQDRFEVNISELPDEI 418
>FB|FBgn0014189 [details] [associations]
symbol:Hel25E "Helicase at 25E" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC;NAS;IDA]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0005700
"polytene chromosome" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS;NAS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005875 GO:GO:0007052
EMBL:AE014134 GO:GO:0016607 GO:GO:0005681 GO:GO:0003723
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095549
KO:K12812 EMBL:X79802 EMBL:L06018 EMBL:AY118921 PIR:S51601
RefSeq:NP_723089.1 RefSeq:NP_723090.1 RefSeq:NP_723091.1
UniGene:Dm.3332 ProteinModelPortal:Q27268 SMR:Q27268 DIP:DIP-20199N
IntAct:Q27268 MINT:MINT-304772 STRING:Q27268 PaxDb:Q27268
PRIDE:Q27268 EnsemblMetazoa:FBtr0079123 EnsemblMetazoa:FBtr0079124
EnsemblMetazoa:FBtr0079125 GeneID:33781 KEGG:dme:Dmel_CG7269
CTD:33781 FlyBase:FBgn0014189 InParanoid:Q27268 OMA:ENRFLEE
OrthoDB:EOG47WM45 PhylomeDB:Q27268 GenomeRNAi:33781 NextBio:785218
Bgee:Q27268 GermOnline:CG7269 Uniprot:Q27268
Length = 424
Score = 499 (180.7 bits), Expect = 4.3e-46, P = 4.3e-46
Identities = 126/382 (32%), Positives = 202/382 (52%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ I + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +L
Sbjct: 45 DFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE 104
Query: 85 KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----- 139
+++ TRE+A QI+ ++ + V F GG +++ + ++
Sbjct: 105 PSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPH 164
Query: 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVV 198
IVVG+PGRI +I+ K LN+ ++ F++DE DK++ D+ I+ P KQ+++
Sbjct: 165 IVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMF 224
Query: 199 SATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKLV 257
SAT S D +K+M DP+ + +D + L G++Q + E N ++ KKL
Sbjct: 225 SATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKE--N------EKNKKLF 276
Query: 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR 317
+LL FNQ VIF R + + L NF A + Q+ RL FK + R
Sbjct: 277 ELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKR 336
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377
ILV T+L RG+D V++V N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 337 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK- 395
Query: 378 HSLMGEINLDHAFNVGLVPDNL 399
++ E+ N+ +P+ +
Sbjct: 396 --ILNEVQDRFDVNISELPEEI 415
>UNIPROTKB|E2QY95 [details] [associations]
symbol:DDX39A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:10212
KO:K13182 GeneTree:ENSGT00660000095549 OMA:WANCVIS
EMBL:AAEX03012368 RefSeq:XP_533895.2 Ensembl:ENSCAFT00000025943
GeneID:476689 KEGG:cfa:476689 NextBio:20852303 Uniprot:E2QY95
Length = 427
Score = 499 (180.7 bits), Expect = 4.3e-46, P = 4.3e-46
Identities = 123/383 (32%), Positives = 206/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L ++
Sbjct: 48 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE 107
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ ++ V F GG +++ + ++
Sbjct: 108 --PVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 165
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
+VVG+PGRI +++ + LN+ +V+ F++DE DK++ D+ I+ P KQ ++
Sbjct: 166 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ + +D T+ L G++Q L+ ++ +KL
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYV--------KLKDSEKNRKL 277
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 278 FDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQR 337
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++V N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 397
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ NV +P+ +
Sbjct: 398 ---ILNDVQDRFEVNVAELPEEI 417
>UNIPROTKB|F1SCH3 [details] [associations]
symbol:DDX39A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095549 OMA:WANCVIS EMBL:FP103015
Ensembl:ENSSSCT00000015052 Uniprot:F1SCH3
Length = 475
Score = 499 (180.7 bits), Expect = 4.3e-46, P = 4.3e-46
Identities = 123/383 (32%), Positives = 206/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L ++
Sbjct: 96 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE 155
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ ++ V F GG +++ + ++
Sbjct: 156 --PVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 213
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
+VVG+PGRI +++ + LN+ +V+ F++DE DK++ D+ I+ P KQ ++
Sbjct: 214 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 273
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ + +D T+ L G++Q L+ ++ +KL
Sbjct: 274 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYV--------KLKDSEKNRKL 325
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 326 FDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQR 385
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++V N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 386 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 445
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ NV +P+ +
Sbjct: 446 ---ILNDVQDRFEVNVAELPEEI 465
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 479 (173.7 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 126/398 (31%), Positives = 205/398 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV S FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GT
Sbjct: 86 KTSDVTSTKGNEFE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 144
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GKS +++ L +L L Q +++ PTRE+A+Q++ + V H+ V GGT
Sbjct: 145 GKSGAYLIPLLERL-DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 203
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +V+ +PGRI +IK ++ V++ ++DEA+KL++ FV+ + I
Sbjct: 204 NLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEANKLLSQDFVQIMEDI 263
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
LP +Q+L+ SAT+ + ++ P I E+ T L GV Q A
Sbjct: 264 ILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELT--LKGVTQYYA------- 314
Query: 245 PSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQ 301
YV E +K L L S+ NQ +IF N R E++ + ++ + Y+ Q
Sbjct: 315 ----YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ R F+ G R LV TDL RGID V++VIN + P A TYLHR+GR+GR+G
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGH 430
Query: 362 RGLVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
GL I +++ + S+ ++ + + +P N+
Sbjct: 431 LGLAINLITYDDRFNLKSIEEQLGTE----IKPIPSNI 464
Score = 52 (23.4 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 1016 DLVVYDDAFDMFS----------PAANNLDE--YEIDYVEQPVDEKK 1050
+L+ YDD F++ S P +N+D+ Y +Y +PV+++K
Sbjct: 436 NLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEK 482
>MGI|MGI:1915528 [details] [associations]
symbol:Ddx39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915528 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003676 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX EMBL:AK088894 EMBL:AK145927 EMBL:AK146294
EMBL:AK150997 EMBL:AK162752 EMBL:AK168079 EMBL:BC020134
IPI:IPI00123878 IPI:IPI00553461 RefSeq:NP_932099.2 UniGene:Mm.28222
ProteinModelPortal:Q8VDW0 SMR:Q8VDW0 STRING:Q8VDW0
PhosphoSite:Q8VDW0 PaxDb:Q8VDW0 PRIDE:Q8VDW0
Ensembl:ENSMUST00000019576 Ensembl:ENSMUST00000109810
Ensembl:ENSMUST00000172396 GeneID:68278 KEGG:mmu:68278
UCSC:uc008chc.2 CTD:68278 GeneTree:ENSGT00660000095549
InParanoid:Q8VDW0 OMA:WANCVIS NextBio:326910 Bgee:Q8VDW0
CleanEx:MM_DDX39 Genevestigator:Q8VDW0
GermOnline:ENSMUSG00000005481 Uniprot:Q8VDW0
Length = 427
Score = 498 (180.4 bits), Expect = 5.5e-46, P = 5.5e-46
Identities = 123/383 (32%), Positives = 204/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L ++
Sbjct: 48 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE 107
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPV 138
PV Q +++ TRE+A QI+ ++ ++ V F GG +++ K
Sbjct: 108 --PVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCP 165
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
+VVG+PGRI +++ + LN+ +V+ F++DE DK++ D+ I+ P KQ ++
Sbjct: 166 HVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ + +D T+ L G++Q L+ ++ +KL
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYV--------KLKDSEKNRKL 277
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 278 FDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQR 337
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++V N ++P D+ TYLHR+ RAGR+GT+GL +T VS E+ K
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAK 397
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ NV +P+ +
Sbjct: 398 ---ILNDVQDRFEVNVAELPEEI 417
>RGD|619920 [details] [associations]
symbol:Ddx39a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AF063447 RGD:619920
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 OMA:WANCVIS
EMBL:BC086328 IPI:IPI00325144 RefSeq:NP_446015.2 UniGene:Rn.161716
ProteinModelPortal:Q5U216 SMR:Q5U216 STRING:Q5U216 PRIDE:Q5U216
Ensembl:ENSRNOT00000045974 GeneID:89827 KEGG:rno:89827
InParanoid:Q5U216 NextBio:617744 Genevestigator:Q5U216
GermOnline:ENSRNOG00000004373 Uniprot:Q5U216
Length = 427
Score = 497 (180.0 bits), Expect = 7.1e-46, P = 7.1e-46
Identities = 122/383 (31%), Positives = 204/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L ++
Sbjct: 48 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE 107
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPV 138
P+ Q +++ TRE+A QI+ ++ ++ V F GG +++ K
Sbjct: 108 --PINGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCP 165
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
+VVG+PGRI +++ + LN+ +V+ F++DE DK++ D+ I+ P KQ ++
Sbjct: 166 HVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ + +D T+ L G++Q L+ ++ +KL
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYV--------KLKDSEKNRKL 277
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 278 FDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQR 337
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++V N ++P D+ TYLHR+ RAGR+GT+GL +T VS E+ K
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAK 397
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ NV +P+ +
Sbjct: 398 ---ILNDVQDRFEVNVAELPEEI 417
>UNIPROTKB|Q5E970 [details] [associations]
symbol:DDX39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
isoform 1" species:9913 "Bos taurus" [GO:0006406 "mRNA export from
nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334
KO:K13182 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
OMA:WANCVIS EMBL:DAAA02019335 EMBL:BT021050 IPI:IPI00700228
RefSeq:NP_001029924.1 UniGene:Bt.29896 SMR:Q5E970 STRING:Q5E970
Ensembl:ENSBTAT00000029088 GeneID:614215 KEGG:bta:614215
InParanoid:Q5E970 NextBio:20899000 Uniprot:Q5E970
Length = 427
Score = 496 (179.7 bits), Expect = 9.0e-46, P = 9.0e-46
Identities = 122/383 (31%), Positives = 206/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L ++
Sbjct: 48 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIE 107
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ ++ V F GG +++ + ++
Sbjct: 108 --PVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKRNCP 165
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
+VVG+PGRI +++ + LN+ +V+ F++DE DK++ D+ I+ P KQ ++
Sbjct: 166 HVVVGTPGRILALVRNRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ + +D T+ L G++Q L+ ++ +KL
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYV--------KLKDSEKNRKL 277
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 278 FDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQR 337
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++V N ++P D+ TYLHR+ RAGR+GT+GL +T VS E+ K
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAK 397
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ NV +P+ +
Sbjct: 398 ---ILNDVQDRFEVNVAELPEEI 417
>TAIR|locus:2030285 [details] [associations]
symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
"plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
Uniprot:Q9CAI7
Length = 414
Score = 496 (179.7 bits), Expect = 9.0e-46, P = 9.0e-46
Identities = 129/395 (32%), Positives = 215/395 (54%)
Query: 16 SNIDVLFEN-DVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
+N D + ++ D + +P + +G+ GF K S IQ G D I Q++SGTGK+
Sbjct: 34 TNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTA 93
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133
F L +L + + Q Q ++LAPTRE+A QI V+R++G ++ + +GGT V
Sbjct: 94 TFCSGVLQQL-DISLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKAQACVGGTSVRE 151
Query: 134 PKRPVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
+R +Q +VVG+PGR+ +++ + L D++++F++DEAD++++ GF + I I+ L
Sbjct: 152 DQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLL 211
Query: 190 PPMKQMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSL 247
P Q+ V SAT + L +K+M P +L++ ++ T L G+KQ + +
Sbjct: 212 PSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT--LEGIKQFYVNVDK------ 263
Query: 248 RYVDEEKKLVQL--LSQT-PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
EE KL L L +T Q VIF N + + + + + + + + G DQ R
Sbjct: 264 ----EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTR 319
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
+ F+ G R+L+TTDL ARGID V LVIN ++P YLHR+GR+GR+G +G+
Sbjct: 320 DIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGV 379
Query: 365 VITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
I +++E +M +I + V +P N+
Sbjct: 380 AINFMTSED----ERMMADIQRFYNVVVEELPSNV 410
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 495 (179.3 bits), Expect = 1.2e-45, P = 1.2e-45
Identities = 119/364 (32%), Positives = 203/364 (55%)
Query: 17 NIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIV 74
N D + E+ D+ +++ + +G+ GF K S IQ A G D I Q++SGTGK+
Sbjct: 23 NYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTAT 82
Query: 75 FVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP 134
F V+ L + I Q +++APTRE+A QI V+ ++G ++ N+++ IGGT V
Sbjct: 83 FSVSILQR-IDHEDPHVQALVMAPTRELAQQIQKVMSALGEYL-NVNILPCIGGTSVRDD 140
Query: 135 KRPVQ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP 190
+R ++ +VVG+PGR+ MI L+ +++F++DEAD++++ GF + I ++ +P
Sbjct: 141 QRKLEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMP 200
Query: 191 PMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLR 248
Q++++SAT + L ++M +P+ L++ ++ T L G++Q + +
Sbjct: 201 QDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELT--LEGIRQFYINVQK------- 251
Query: 249 YVDEEKK--LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLA 306
DE K L L + Q VIF N + + + + E + F L G DQ R
Sbjct: 252 --DEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDT 309
Query: 307 SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVI 366
+ F+ G R+L+TTD+ ARGID V LVIN ++P + Y+HR+GR+GR+G +G+ I
Sbjct: 310 IMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAI 369
Query: 367 TIVS 370
V+
Sbjct: 370 NFVT 373
>UNIPROTKB|O00148 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006406 "mRNA export from
nucleus" evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U90426 EMBL:AK026614 EMBL:BC001009
IPI:IPI00940237 RefSeq:NP_005795.2 UniGene:Hs.311609
ProteinModelPortal:O00148 SMR:O00148 IntAct:O00148
MINT:MINT-1035991 STRING:O00148 PhosphoSite:O00148 PaxDb:O00148
PeptideAtlas:O00148 PRIDE:O00148 DNASU:10212
Ensembl:ENST00000242776 GeneID:10212 KEGG:hsa:10212 UCSC:uc002myo.3
CTD:10212 GeneCards:GC19M014521 HGNC:HGNC:17821 neXtProt:NX_O00148
PharmGKB:PA27226 HOVERGEN:HBG107334 InParanoid:O00148 KO:K13182
OrthoDB:EOG4XSKPX PhylomeDB:O00148 ChiTaRS:DDX39A GenomeRNAi:10212
NextBio:38664 ArrayExpress:O00148 Bgee:O00148 CleanEx:HS_DDX39
Genevestigator:O00148 GermOnline:ENSG00000123136 Uniprot:O00148
Length = 427
Score = 493 (178.6 bits), Expect = 1.9e-45, P = 1.9e-45
Identities = 121/383 (31%), Positives = 205/383 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L ++
Sbjct: 48 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE 107
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ ++ V F GG +++ + ++
Sbjct: 108 --PVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 165
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
+VVG+PGRI +++ + ++ +V+ F++DE DK++ D+ I+ P KQ ++
Sbjct: 166 HVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S D +K+M DP+ + +D T+ L G++Q L+ ++ +KL
Sbjct: 226 FSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYV--------KLKDSEKNRKL 277
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ +IF R + + L NF A + Q+ RL+ FK +
Sbjct: 278 FDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQR 337
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++V N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 397
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ NV +P+ +
Sbjct: 398 ---ILNDVQDRFEVNVAELPEEI 417
>POMBASE|SPAC17G6.14c [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase Uap56"
species:4896 "Schizosaccharomyces pombe" [GO:0000346 "transcription
export complex" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006406 "mRNA export from nucleus" evidence=ISO] [GO:0008380
"RNA splicing" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC17G6.14c GO:GO:0005524 EMBL:CU329670
GO:GO:0008380 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K12812 GO:GO:0000346
OrthoDB:EOG4H49C6 EMBL:D89270 PIR:T37846 PIR:T43199
RefSeq:NP_594261.1 ProteinModelPortal:O13792 SMR:O13792
STRING:O13792 EnsemblFungi:SPAC17G6.14c.1 GeneID:2542433
KEGG:spo:SPAC17G6.14c OMA:DAVEFNQ NextBio:20803490 Uniprot:O13792
Length = 434
Score = 493 (178.6 bits), Expect = 1.9e-45, P = 1.9e-45
Identities = 128/394 (32%), Positives = 209/394 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + ++GF S +Q P + G D + Q+KSG GK+ VFV++ L ++
Sbjct: 55 DFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE 114
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQV--------ERPK 135
PV + ++L TRE+A QI + ++ ++ F GG + ++ K
Sbjct: 115 --PVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQ 194
P IVV +PGR+ +++ K L ++SV+ F++DE DKL+ + DI ++ PP KQ
Sbjct: 173 SP-HIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQ 231
Query: 195 MLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQ-LVALIPECKNPSLRYVDE 252
+++ SAT S++ +K+M +PL I +D T+ L G++Q V L + KN
Sbjct: 232 VMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKN-------- 283
Query: 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFK 312
+K+ LL FNQ VIF R + L NF + + G Q+ R+ +FK
Sbjct: 284 -RKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFK 342
Query: 313 RGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
RI V TD+ RGID V++VIN ++P +YLHR+GRAGR+GT+GL IT S+E
Sbjct: 343 DFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSE 402
Query: 373 SLVKFHSLMGEINLDHAFNVGLVPDNL-TGDQIN 405
+ ++ +I N+ +PD + G +N
Sbjct: 403 ---EDSQILDKIQERFEVNITELPDEIDVGSYMN 433
>ZFIN|ZDB-GENE-040426-1259 [details] [associations]
symbol:ddx39b "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39B" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-1259 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX511233
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 KO:K12812
OMA:NNPLINC EMBL:FP085397 EMBL:BC055240 IPI:IPI00502330
RefSeq:NP_957237.1 UniGene:Dr.5423 SMR:Q7SXU7 STRING:Q7SXU7
Ensembl:ENSDART00000052355 GeneID:393917 KEGG:dre:393917 CTD:393917
InParanoid:Q7SXU7 NextBio:20814893 Uniprot:Q7SXU7
Length = 435
Score = 493 (178.6 bits), Expect = 1.9e-45, P = 1.9e-45
Identities = 124/357 (34%), Positives = 192/357 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +L
Sbjct: 56 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE 115
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPV 138
PV Q +++ TRE+A QI+ ++ ++ V F GG +++ K
Sbjct: 116 --PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKESP 173
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
+VVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+++
Sbjct: 174 HVVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 233
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ I +D T+ L G++Q + + N ++ +KL
Sbjct: 234 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--N------EKNRKL 285
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + A Q RLA FK +
Sbjct: 286 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQR 345
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373
RILV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+
Sbjct: 346 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 402
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 490 (177.5 bits), Expect = 3.9e-45, P = 3.9e-45
Identities = 141/447 (31%), Positives = 220/447 (49%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ PI + ++E G+ SPIQ+ A P VL G D + +++GTGK+ F + L L K P
Sbjct: 8 LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGP 67
Query: 88 ---VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQI 140
Q + +IL PTRE+A QI D V G H+ L GG Q++R + I
Sbjct: 68 KVRANQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQMQRMCKGADI 126
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200
+V +PGR+ + + D + + ++DEAD++++ GF+ DI I LP +Q L+ SA
Sbjct: 127 LVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSA 186
Query: 201 TYSHDNLATLQKYMVD-PLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL 259
T+S + + L K +V+ P+ I A V+Q + K P + LV+L
Sbjct: 187 TFSTE-IRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDM--------LVKL 237
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
+ + + Q ++F + + L A + G + Q AR +L FK G+VRIL
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHS 379
V TD+AARGID + V+N E+P A Y+HR+GR GR G G I++VSA + +
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357
Query: 380 L--MGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEESSKV 437
+ + + L G P N + ++ T KP + ++ + VE E V
Sbjct: 358 IERLTQALLPRVNLAGFEPTNQLPES-----KLDTRPLKP-KKPKKPKKVEGAGENKGSV 411
Query: 438 ENTKPL---RGAPSKEVTKKGASKEGT 461
KP RG P+ + + A K GT
Sbjct: 412 AENKPKAGHRGQPTGQA--RTAKKGGT 436
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 490 (177.5 bits), Expect = 3.9e-45, P = 3.9e-45
Identities = 141/447 (31%), Positives = 220/447 (49%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ PI + ++E G+ SPIQ+ A P VL G D + +++GTGK+ F + L L K P
Sbjct: 8 LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGP 67
Query: 88 ---VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQI 140
Q + +IL PTRE+A QI D V G H+ L GG Q++R + I
Sbjct: 68 KVRANQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQMQRMCKGADI 126
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200
+V +PGR+ + + D + + ++DEAD++++ GF+ DI I LP +Q L+ SA
Sbjct: 127 LVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSA 186
Query: 201 TYSHDNLATLQKYMVD-PLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQL 259
T+S + + L K +V+ P+ I A V+Q + K P + LV+L
Sbjct: 187 TFSTE-IRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDM--------LVKL 237
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
+ + + Q ++F + + L A + G + Q AR +L FK G+VRIL
Sbjct: 238 VKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHS 379
V TD+AARGID + V+N E+P A Y+HR+GR GR G G I++VSA + +
Sbjct: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357
Query: 380 L--MGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEESSKV 437
+ + + L G P N + ++ T KP + ++ + VE E V
Sbjct: 358 IERLTQALLPRVNLAGFEPTNQLPES-----KLDTRPLKP-KKPKKPKKVEGAGENKGSV 411
Query: 438 ENTKPL---RGAPSKEVTKKGASKEGT 461
KP RG P+ + + A K GT
Sbjct: 412 AENKPKAGHRGQPTGQA--RTAKKGGT 436
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 490 (177.5 bits), Expect = 3.9e-45, P = 3.9e-45
Identities = 124/383 (32%), Positives = 196/383 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T+DV + FE D +++ + +G+ E GF K SPIQ + P L G D + ++K+GT
Sbjct: 144 QTEDVTATKGNEFE-DYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGT 202
Query: 70 GKSIVFVVAALNKLIKLPVQQP-QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG 128
GK+ F + L K+ P Q +IL PTRE+A+Q + V + + ++K + V GG
Sbjct: 203 GKTGAFCIPTLEKID--PENNVIQAVILVPTRELALQTSQVCKELSKYLK-IEVMVTTGG 259
Query: 129 TQVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITW 184
T + R +PV ++VG+PGRI + K + + +MDEADKL++ F I
Sbjct: 260 TSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEE 319
Query: 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKN 244
+ LP +Q+L+ SAT+ + +Y+ P +I D L+GV Q A + E +
Sbjct: 320 LIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQLT-LMGVTQYYAFVEERQK 378
Query: 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
L L S+ NQ +IF N R E++ + + + Y+ Q R
Sbjct: 379 VHC--------LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHR 430
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
F+ G R LV TDL RGID V++VIN + P + +YLHR+GR+GR+G GL
Sbjct: 431 NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGL 490
Query: 365 VITIVSAESLVKFHSLMGEINLD 387
+ +V+ E K + E+ +
Sbjct: 491 AVNLVTYEDRFKMYQTEQELGTE 513
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 471 (170.9 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 133/509 (26%), Positives = 244/509 (47%)
Query: 20 VLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAA 79
+ F+ D + + + + GF + +PIQ P L+ D I Q+++GTGK+ F +
Sbjct: 3 ITFQ-DFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPL 61
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIG---GTQVERPKR 136
+ K I Q I++APTRE+A+Q+++ + +G + + + G G Q+ K+
Sbjct: 62 VEK-INPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK 120
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQML 196
I+VG+PGR+ I + + +++V +MDEAD+++N GF++DI I S +P Q L
Sbjct: 121 NPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTL 180
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT +++M +P ++ + + ++Q + E K D +L
Sbjct: 181 LFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKK-----FDTLTRL 235
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ + Q+P ++F + R + + E L + AE + G Q R+ +L FK G +
Sbjct: 236 LDI--QSP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAI 292
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA--ESL 374
+LV TD+AARG+D + V V N ++P D +Y+HR+GR GR G G+ +T ++ +S+
Sbjct: 293 EVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSM 352
Query: 375 VKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEES 434
++ + +D L + L G Q +R++T +++ A E
Sbjct: 353 LRAIEQTTKRKMDRMKEPTL-DEALEGQQQVTVERLRTTISE-----NNLNFYMTAAAEL 406
Query: 435 SKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQ---SEEESDSENDGKPD-ENGSQRG 490
+ + + A K TK+ + T LTD S+ + + + D + G RG
Sbjct: 407 LEDHDAVTVVAAAIKMATKE---PDDTPVRLTDEAPMVSKRYKNQRSSKRRDGQGGGYRG 463
Query: 491 SKRSKEFKTQEKCVKGAGEDENGDRKASK 519
K ++ + +GDR+ K
Sbjct: 464 GKGKSNNRSSYDKKRSNDRRSSGDRRQKK 492
Score = 50 (22.7 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 946 RDERNGAYTGDKGGRNRGHSVNSRK--DHSFAGETPRSK 982
RD + G Y G KG N S + ++ D +G+ + K
Sbjct: 454 RDGQGGGYRGGKGKSNNRSSYDKKRSNDRRSSGDRRQKK 492
Score = 41 (19.5 bits), Expect = 5.0e-44, Sum P(2) = 5.0e-44
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1898 SSESAAREKNSGQRSRGSGDKAARKS 1923
++ S+ +K S R R SGD+ +KS
Sbjct: 469 NNRSSYDKKRSNDR-RSSGDRRQKKS 493
Score = 41 (19.5 bits), Expect = 5.0e-44, Sum P(2) = 5.0e-44
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 1100 HRLQRNSKKRHSKISTERSNSNSAPREKSSDAKQAANEEENITGGNDENKT 1150
++ QR+SK+R + R + S D K++ N+ + +G + K+
Sbjct: 445 YKNQRSSKRRDGQGGGYRGGKGKSNNRSSYDKKRS-NDRRS-SGDRRQKKS 493
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 465 (168.7 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 132/438 (30%), Positives = 221/438 (50%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D+ + + + QG+ + GF +PIQ P L G D Q+++GTGK+ F+++ KL+
Sbjct: 5 DLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTKLL 64
Query: 85 KL----PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ- 139
+ + P+ IILAPTRE+ VQI + +GAH + GG + K ++
Sbjct: 65 RSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHC-GFTIQAIYGGVDYMKQKNALKE 123
Query: 140 ---IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM--KQ 194
+VVG+PGR+ +K K ++ + + ++DEAD++ + GF+ D+ +I +LPP +Q
Sbjct: 124 GADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYDKRQ 183
Query: 195 MLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254
L+ SAT + + ++M P + A P +Q+ A E L +V ++
Sbjct: 184 NLMFSATLNQRVMELAYEFMNVPEKV----AVTP----EQMTA---ERVEQVLYHVGRKE 232
Query: 255 K---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANAN-FGAEYLSGAQDQKARLASLDS 310
K L+ LL + + +IF N + E + E L NAN F +SG +Q+ RL L+
Sbjct: 233 KFPLLLGLLRKEGMERTMIFVNTKREAEFLDERL-NANDFPCRVISGDVEQRKRLKILED 291
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
FK GK+ I++ TD+A+RG+ V VIN ++P DA Y+HR+GR R G G I++
Sbjct: 292 FKSGKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMAD 351
Query: 371 AESLVKFHSLMGEINLDHAFNVGLVPDNL-TGD--QINWTQRVQTLLAK-PLDQAQERED 426
+ FH + V D+L D ++ + Q AK P ++ +
Sbjct: 352 EDGA--FHLEAIHEYIKDKIPVEWAEDDLFVHDFKRVKPRPKGQETRAKGPTRHGRKHPE 409
Query: 427 VEQTAEESSKVENTKPLR 444
E+ E K + ++P R
Sbjct: 410 AEKKEPEGEKKKRSRPRR 427
Score = 56 (24.8 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 869 QTTLNKFDTQYNSSDYQSDSK-PYGDRTKRRSRPRKNK 905
Q T K T++ +++ K P G++ K+RSRPR+ K
Sbjct: 393 QETRAKGPTRHGRKHPEAEKKEPEGEK-KKRSRPRRKK 429
>UNIPROTKB|E7EQG2 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC112907 HGNC:HGNC:3284 ChiTaRS:EIF4A2
IPI:IPI00924536 ProteinModelPortal:E7EQG2 SMR:E7EQG2 PRIDE:E7EQG2
Ensembl:ENST00000425053 ArrayExpress:E7EQG2 Bgee:E7EQG2
Uniprot:E7EQG2
Length = 362
Score = 486 (176.1 bits), Expect = 1.0e-44, P = 1.0e-44
Identities = 122/347 (35%), Positives = 199/347 (57%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + +N D+ +++ + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHV-KNLHVDYFIGGTQVE 132
F ++ L +L ++ ++ Q ++LAPTRE+A QI V+ ++G ++ H IGGT V
Sbjct: 86 TFAISILQQL-EIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHA--CIGGTNVR 142
Query: 133 RPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS 187
+ +Q IVVG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Query: 188 QLPPMKQMLVVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNP 245
+L Q++++SAT D L +K+M DP+ L++ E+ T L G+KQ + E +
Sbjct: 203 KLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELT--LEGIKQFYINV-EREEW 259
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L D L + L+ T Q VIF N + + + + E + +F L G DQK R
Sbjct: 260 KL---DTLCDLYETLTIT---QAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERD 313
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHR 352
+ F+ G R+L+TTDL ARGID V LVIN ++P + Y+HR
Sbjct: 314 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 360
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 485 (175.8 bits), Expect = 1.3e-44, P = 1.3e-44
Identities = 114/360 (31%), Positives = 195/360 (54%)
Query: 18 IDVLFENDVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
+DV D + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F
Sbjct: 35 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 94
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
++ L + + + V++ Q +ILAPTRE+AVQI + + G V + + R
Sbjct: 95 ISVL-QCLDIQVRETQALILAPTRELAVQIQKSLLATGEVPVPPPVKCTVSSWEQCRLAC 153
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQML 196
+ + + I MI+ + L ++++ ++DEAD+++N GF E I +Y LPP Q++
Sbjct: 154 FLSLFI-LQSEI-DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV 211
Query: 197 VVSATYSHDNLATLQKYMVDPL--LIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254
++SAT H+ L K+M DP+ L++ ++ T L G+KQ + + ++
Sbjct: 212 LISATLPHEILEMTNKFMTDPIRILVKRDELT--LEGIKQFFVAV---EREEWKF----D 262
Query: 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
L L Q VIF N + + + + E + ANF + G QK R + + F+ G
Sbjct: 263 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 322
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
R+L++TD+ ARG+D V L+IN ++P++ Y+HR+GR+GRYG +G+ I V + +
Sbjct: 323 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 382
>WB|WBGene00001840 [details] [associations]
symbol:hel-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0008380
GO:GO:0006397 GO:GO:0010171 GO:GO:0005681 GO:GO:0003723
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095549 OMA:NAENPAI EMBL:Z54327 EMBL:U08102
PIR:T19484 RefSeq:NP_001021985.1 ProteinModelPortal:Q18212
SMR:Q18212 STRING:Q18212 PaxDb:Q18212 PRIDE:Q18212
EnsemblMetazoa:C26D10.2a.1 EnsemblMetazoa:C26D10.2a.2 GeneID:174333
KEGG:cel:CELE_C26D10.2 UCSC:C26D10.2a CTD:174333 WormBase:C26D10.2a
InParanoid:Q18212 NextBio:883586 ArrayExpress:Q18212 GO:GO:0001703
Uniprot:Q18212
Length = 425
Score = 485 (175.8 bits), Expect = 1.3e-44, P = 1.3e-44
Identities = 120/375 (32%), Positives = 198/375 (52%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+TK ++I D L++ I + + + GF S +Q P + G D + Q+KSG
Sbjct: 30 KTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGM 89
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTII-LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG 128
GK+ VFV+ L +L PV +++ + TRE+A QI+ ++ + V F GG
Sbjct: 90 GKTAVFVITTLQQLE--PVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGG 147
Query: 129 TQVERPKRPV-----QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVE-DI 182
+++ + + IVVG+PGR+ + + L +D V+ F++DE DK+I + D+
Sbjct: 148 MAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDV 207
Query: 183 TWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPE 241
I P KQ+++ SAT + +++M DP+ + +D + L G++Q + E
Sbjct: 208 QEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKE 267
Query: 242 CKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQ 301
++ ++L+ LL FNQ VIF R E + + L NF + + Q
Sbjct: 268 A--------EKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQ 319
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ RL+ +FK + RILV TDL RG+D V++V N ++P D+ +YLHR+ RAGR+GT
Sbjct: 320 EERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGT 379
Query: 362 RGLVITIVSAESLVK 376
+GL IT VS E+ K
Sbjct: 380 KGLAITFVSDENDAK 394
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 480 (174.0 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 122/381 (32%), Positives = 205/381 (53%)
Query: 8 CARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKS 67
C R + + +VL + L+ + ++E G+V+ +P+Q A P +L D +V +++
Sbjct: 2 CGRFRSYFMSFEVLGLSAELL-----RAIREQGYVEPTPVQRQAIPVILQARDVMVTAQT 56
Query: 68 GTGKSIVFVVAALNKLI--KLPVQQ---P--QTIILAPTREIAVQITDVVRSVGAHVKNL 120
GTGK+ F + L +L + P+Q+ P + +IL PTRE+AVQ+ + VR+ G ++ L
Sbjct: 57 GTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLP-L 115
Query: 121 HVDYFIGGT----QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176
GG Q+ +R V I+V +PGR+ ++ LN+ V F++DEAD++++
Sbjct: 116 KATVVHGGVSIKPQINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDM 175
Query: 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
GF+ DI I LP +Q L+ SAT+S + K + P LI E A R
Sbjct: 176 GFLPDIRRILKLLPESRQNLLFSATFSKEIKELTDKLLHSPALI--EVARR-----NTAA 228
Query: 237 ALIPECKNPSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAE 293
A I +P VD ++K L ++ + Q ++F+ + + + L + +
Sbjct: 229 ARITHVVHP----VDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSA 284
Query: 294 YLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRM 353
+ G + Q AR+ +L FK+GK+R+LV TD+AARG+D + VIN E+P A Y+HR+
Sbjct: 285 AIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRV 344
Query: 354 GRAGRYGTRGLVITIVSAESL 374
GR GR G+ I++VS + +
Sbjct: 345 GRTGRASNDGVAISLVSGDEV 365
Score = 37 (18.1 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 389 AFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQ 420
A N G+ ++GD++ + ++ LL + Q
Sbjct: 350 ASNDGVAISLVSGDEVRLLRDIEKLLQSKMPQ 381
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 480 (174.0 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 122/381 (32%), Positives = 205/381 (53%)
Query: 8 CARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKS 67
C R + + +VL + L+ + ++E G+V+ +P+Q A P +L D +V +++
Sbjct: 2 CGRFRSYFMSFEVLGLSAELL-----RAIREQGYVEPTPVQRQAIPVILQARDVMVTAQT 56
Query: 68 GTGKSIVFVVAALNKLI--KLPVQQ---P--QTIILAPTREIAVQITDVVRSVGAHVKNL 120
GTGK+ F + L +L + P+Q+ P + +IL PTRE+AVQ+ + VR+ G ++ L
Sbjct: 57 GTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLP-L 115
Query: 121 HVDYFIGGT----QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176
GG Q+ +R V I+V +PGR+ ++ LN+ V F++DEAD++++
Sbjct: 116 KATVVHGGVSIKPQINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDM 175
Query: 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
GF+ DI I LP +Q L+ SAT+S + K + P LI E A R
Sbjct: 176 GFLPDIRRILKLLPESRQNLLFSATFSKEIKELTDKLLHSPALI--EVARR-----NTAA 228
Query: 237 ALIPECKNPSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAE 293
A I +P VD ++K L ++ + Q ++F+ + + + L + +
Sbjct: 229 ARITHVVHP----VDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSA 284
Query: 294 YLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRM 353
+ G + Q AR+ +L FK+GK+R+LV TD+AARG+D + VIN E+P A Y+HR+
Sbjct: 285 AIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRV 344
Query: 354 GRAGRYGTRGLVITIVSAESL 374
GR GR G+ I++VS + +
Sbjct: 345 GRTGRASNDGVAISLVSGDEV 365
Score = 37 (18.1 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 389 AFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQ 420
A N G+ ++GD++ + ++ LL + Q
Sbjct: 350 ASNDGVAISLVSGDEVRLLRDIEKLLQSKMPQ 381
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 473 (171.6 bits), Expect = 1.9e-44, Sum P(2) = 1.9e-44
Identities = 124/359 (34%), Positives = 196/359 (54%)
Query: 19 DVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVA 78
+V FE+ + + I + GF K IQ + P+ L G D I +++G+GK+ FV+
Sbjct: 118 NVTFES-LGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIP 176
Query: 79 ALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ-----VER 133
L KL++ P Q + LAPTRE+A QI D ++G+ + + +GG +
Sbjct: 177 VLQKLLEAP-QGLFCLALAPTRELAYQIADQFNAIGSTI-GVKTCVLVGGIDSMSQSLAL 234
Query: 134 PKRPVQIVVGSPGRIKQMIK-LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM 192
K+P +VVGSPGR+ ++ K N+ S++ FIMDEAD+L + F E++ I +P
Sbjct: 235 AKKP-HVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKE 293
Query: 193 KQMLVVSATYSHDNLATLQKY-MVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD 251
+ + SAT + +A LQ+ +V+P+ ++ + + + Q +P +Y D
Sbjct: 294 RNTYLFSATMT-SKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVP------FKYKD 346
Query: 252 EEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSF 311
L +L++ N +IF++ I L N FGA ++G DQ RLASL+ F
Sbjct: 347 --CYLAYILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKF 404
Query: 312 KRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
K+G ILV TD+AARG+D +VDLVIN ++P ++ Y+HR+GR R G G ITIV+
Sbjct: 405 KQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVT 463
Score = 43 (20.2 bits), Expect = 1.9e-44, Sum P(2) = 1.9e-44
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 1045 PVDEKKSRRELSQKMDSDRYRPDSDGDPNRRPSSQESLHHNDS---LDIKLRKKLKPGHR 1101
P E+ L + ++ R + D N SS H DS +DI RK +K H+
Sbjct: 485 PCQEETVLIFLERVQEAHRIATNELKDKNYSSSSDR--HSGDSEGSIDINKRKVIKKVHK 542
Query: 1102 LQR 1104
++
Sbjct: 543 KKK 545
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 482 (174.7 bits), Expect = 2.8e-44, P = 2.8e-44
Identities = 128/404 (31%), Positives = 203/404 (50%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV + FE D +++ + +G+ E GF K SPIQ + P L G D + ++K+GT
Sbjct: 114 QTADVTATKGNEFE-DYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGT 172
Query: 70 GKSIVFVVAALNKLIKLPVQQP-QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG 128
GK+ F + L K+ P Q +IL PTRE+A+Q + V + + ++ N+ V GG
Sbjct: 173 GKTGAFCIPVLEKID--PNNNVIQAMILVPTRELALQTSQVCKELSKYL-NIQVMVTTGG 229
Query: 129 TQVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITW 184
T + R +PV ++VG+PGRI + K + + +MDEADKL++ F +
Sbjct: 230 TSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEE 289
Query: 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKN 244
+ LP +Q L+ SAT+ A +++ P +I D L+GV Q A + E +
Sbjct: 290 LIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLT-LMGVTQYYAFVEERQK 348
Query: 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
L L S+ NQ +IF N R E++ + + + Y+ Q R
Sbjct: 349 VHC--------LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHR 400
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
F+ G R LV TDL RGID V++VIN + P + +YLHR+GR+GR+G GL
Sbjct: 401 NRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGL 460
Query: 365 VITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQ 408
+ +V+ E K + E+ + + +P N+ DQ + Q
Sbjct: 461 AVNLVTYEDRFKMYQTEQELGTE----IKPIPSNI--DQAIYCQ 498
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 471 (170.9 bits), Expect = 5.0e-44, Sum P(2) = 5.0e-44
Identities = 124/394 (31%), Positives = 201/394 (51%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D+ I + + + + G+ + IQ A P ++ G D + +++GTGK+ F + L+K I
Sbjct: 17 DLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK-I 75
Query: 85 KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQI 140
+ + PQ ++L PTRE+A+Q+ + GA++ L+V GG+ Q+ +R Q+
Sbjct: 76 DITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQV 135
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200
VVG+PGR+ ++ L++ V ++DEAD+++ GF +D+ I S+ P KQ+ + SA
Sbjct: 136 VVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSA 195
Query: 201 TYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK---LV 257
T KY+ DP + + K VA +N S Y+ +K L
Sbjct: 196 TMPPAIRKLSAKYLHDPFEVTCK--------AKTAVA-----ENISQSYIQVARKMDALT 242
Query: 258 QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVR 317
++L PF ++F + E I E L F A +SG Q R ++ + + G +
Sbjct: 243 RVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDID 302
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKF 377
ILV TD+AARG+D + V+N +IPHD +Y+HR+GR GR G G + VS L
Sbjct: 303 ILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPREL--- 359
Query: 378 HSLMGEINLDHAFNVGLVPDNL-TGDQINWTQRV 410
H L ++ A L L T + +N TQRV
Sbjct: 360 HLLKA---IEKATRQTLTEAQLPTVEDVN-TQRV 389
Score = 41 (19.5 bits), Expect = 5.0e-44, Sum P(2) = 5.0e-44
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 893 DRTKRRSRPRKNKENTDI 910
+R +RR RP++ K D+
Sbjct: 452 NRDQRRDRPQRPKRRPDL 469
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 479 (173.7 bits), Expect = 5.8e-44, P = 5.8e-44
Identities = 125/387 (32%), Positives = 206/387 (53%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T+DV + F+ D+ +++ + +G+ E G+VK SPIQ A P L G D + ++K+GT
Sbjct: 39 QTEDVTATEGNDFD-DLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGT 97
Query: 70 GKSIVFVVAALNKLIKLPVQQP-QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG 128
GK+ F++ AL K P + Q +IL PTRE+A+Q + V + +G ++ N+ V GG
Sbjct: 98 GKTASFLIPALEKTD--PTKDVIQVLILVPTRELALQTSQVCKELGKYM-NVQVMASTGG 154
Query: 129 TQVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITW 184
T ++ R PV I+V +PGR+ + + N+ + IMDEADKL++ F +
Sbjct: 155 TSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQ 214
Query: 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECK 243
+ + LP +Q+L+ SAT+ + + Y+ I E+ T L GV Q A
Sbjct: 215 LINFLPQQRQILLFSATFPVTVKSFKEHYLQQAFEINLMEELT--LKGVTQYYA------ 266
Query: 244 NPSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQD 300
+V+E +K L L S+ NQ +IF N R E++ + + + ++
Sbjct: 267 -----FVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMV 321
Query: 301 QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360
Q R F+ G R LV++DL RGID +V++VIN + P + TYLHR+GR+GR+G
Sbjct: 322 QAHRNRVFHDFRNGACRNLVSSDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFG 381
Query: 361 TRGLVITIVSAESLVKFHSLMGEINLD 387
GL I +++ E + + E+ +
Sbjct: 382 HLGLAINLITYEDRFSLYKIEQELGTE 408
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 478 (173.3 bits), Expect = 7.4e-44, P = 7.4e-44
Identities = 124/386 (32%), Positives = 200/386 (51%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV S FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GT
Sbjct: 85 KTSDVTSTKGNEFE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 143
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GKS +++ L +L L Q +++ PTRE+A+Q++ + V H+ V GGT
Sbjct: 144 GKSGAYLIPLLERL-DLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGT 202
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +V+ +PGRI +IK +D +++ ++DEADKL++ F++ + I
Sbjct: 203 NLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQIMEDI 262
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
LP +Q+L+ SAT+ + ++ P I E+ T L GV Q A
Sbjct: 263 IMTLPKNRQILLYSATFPLSVQKFMTLHLQKPYEINLMEELT--LKGVTQYYA------- 313
Query: 245 PSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQ 301
YV E +K L L S+ NQ +IF N R E++ + ++ + Y+ Q
Sbjct: 314 ----YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 369
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ R F+ G R LV TDL RGID V++VIN + P A TYLHR+GR+GR+G
Sbjct: 370 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGH 429
Query: 362 RGLVITIVSAESLVKFHSLMGEINLD 387
GL I +++ + S+ ++ +
Sbjct: 430 LGLAINLITYDDRFNLKSIEEQLGTE 455
>UNIPROTKB|A4RBS3 [details] [associations]
symbol:SUB2 "ATP-dependent RNA helicase SUB2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000230 EMBL:CM001237 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12812
RefSeq:XP_003720935.1 ProteinModelPortal:A4RBS3 SMR:A4RBS3
STRING:A4RBS3 PRIDE:A4RBS3 EnsemblFungi:MGG_02806T0 GeneID:2682359
KEGG:mgr:MGG_02806 OrthoDB:EOG4H49C6 Uniprot:A4RBS3
Length = 436
Score = 477 (173.0 bits), Expect = 9.5e-44, P = 9.5e-44
Identities = 117/357 (32%), Positives = 192/357 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D I Q+KSG GK+ VFV+ L ++
Sbjct: 56 DFLLKPELLRAIGDCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVE 115
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV + +++ TRE+A QI + ++ ++ F GGT +++ ++
Sbjct: 116 --PVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAELLKNKET 173
Query: 140 ---IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQM 195
I+VG+PGR+ +++ K+L + SVR+F++DE DK+++ D+ I+ P KQ+
Sbjct: 174 HPHIIVGTPGRLNALVRDKFLRLSSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQKQV 233
Query: 196 LVVSATYSHDNLATLQKYMVDPLL-IRPEDATRPLLGVKQ-LVALIPECKNPSLRYVDEE 253
++ SAT S + +K+M +P ED L G++Q VAL + KN
Sbjct: 234 MMFSATLSDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQQYFVALEEKEKN--------- 284
Query: 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR 313
+KL +LL FNQ +IF LR + + L NF + + Q+ R+ FK
Sbjct: 285 RKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKE 344
Query: 314 GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
RI V TD+ RGID ++L IN ++P DA +YLHR+GRAGR+GT+GL ++ V+
Sbjct: 345 FNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVT 401
>ZFIN|ZDB-GENE-030131-4275 [details] [associations]
symbol:ddx39aa "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39Aa" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-4275 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 EMBL:BC071505
IPI:IPI00510085 UniGene:Dr.1111 ProteinModelPortal:Q6IQA5
SMR:Q6IQA5 STRING:Q6IQA5 PRIDE:Q6IQA5 InParanoid:Q6IQA5
ArrayExpress:Q6IQA5 Bgee:Q6IQA5 Uniprot:Q6IQA5
Length = 427
Score = 475 (172.3 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 122/383 (31%), Positives = 200/383 (52%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L ++
Sbjct: 48 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIE 107
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPV 138
PV Q +++ TRE+A QI+ ++ ++ F GG +++ K
Sbjct: 108 --PVDGQVSVLVMCHTRELAFQISKEYERFSKYMSSVKCAAFFGGMSIKKDEDVLKKNCP 165
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI + + K L + +V+ F++DE DK++ D+ I+ P KQ ++
Sbjct: 166 HIVVGTPGRILALSRNKTLTLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMM 225
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ + +D T+ L G++Q L+ ++ +KL
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYV--------KLKDSEKNRKL 277
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 278 FDLLDVLEFNQVVIFVKSVPRCVALSQLLVEQNFPAIAIHRGMTQEERLSRYQQFKDFQR 337
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
RILV T+L RG+D V++V N ++P D+ TYLHR+ RAGR+GT+GL + VS E+ K
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVIFVSDETDAK 397
Query: 377 FHSLMGEINLDHAFNVGLVPDNL 399
++ ++ NV +P+ +
Sbjct: 398 ---ILNDVQDRFEVNVAELPEEI 417
>UNIPROTKB|F8VQ10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AL662847 EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:NAENPAI EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CR942185 IPI:IPI01025218 SMR:F8VQ10
Ensembl:ENST00000417556 Ensembl:ENST00000547039
Ensembl:ENST00000547489 Ensembl:ENST00000548340
Ensembl:ENST00000548614 Ensembl:ENST00000550217
Ensembl:ENST00000552288 Uniprot:F8VQ10
Length = 443
Score = 474 (171.9 bits), Expect = 2.0e-43, P = 2.0e-43
Identities = 125/396 (31%), Positives = 204/396 (51%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +L
Sbjct: 49 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE 108
Query: 85 KLPVQQ--------------PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ 130
+ Q +++ TRE+A QI+ ++ N+ V F GG
Sbjct: 109 PVTGQVYLGRVLGRGFWCVFVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS 168
Query: 131 VERPKRPVQ-----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITW 184
+++ + ++ IVVG+PGRI + + K LN+ ++ FI+DE DK++ D+
Sbjct: 169 IKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 228
Query: 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECK 243
I+ P KQ+++ SAT S + +K+M DP+ I +D T+ L G++Q + +
Sbjct: 229 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-- 286
Query: 244 NPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303
N ++ +KL LL FNQ VIF R + + L NF A + Q+
Sbjct: 287 N------EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEE 340
Query: 304 RLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG 363
RL+ FK + RILV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+G
Sbjct: 341 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKG 400
Query: 364 LVITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
L IT VS E+ K ++ ++ N+ +PD +
Sbjct: 401 LAITFVSDENDAK---ILNDVQDRFEVNISELPDEI 433
>SGD|S000002242 [details] [associations]
symbol:SUB2 "Component of the TREX complex required for
nuclear mRNA export" species:4932 "Saccharomyces cerevisiae"
[GO:0006406 "mRNA export from nucleus" evidence=IMP;IDA;IPI]
[GO:0000346 "transcription export complex" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA;TAS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IGI;ISA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0000781 "chromosome, telomeric region"
evidence=IPI] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002242 GO:GO:0005524
EMBL:BK006938 GO:GO:0005681 GO:GO:0003723 GO:GO:0006348
GO:GO:0006368 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000781 GO:GO:0004004
GO:GO:0006283 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0031124
GeneTree:ENSGT00660000095549 KO:K12812 GO:GO:0000346
OrthoDB:EOG4H49C6 EMBL:Z74132 EMBL:AY692907 PIR:S67620
RefSeq:NP_010199.1 ProteinModelPortal:Q07478 SMR:Q07478
DIP:DIP-5343N IntAct:Q07478 MINT:MINT-526164 STRING:Q07478
PaxDb:Q07478 PeptideAtlas:Q07478 EnsemblFungi:YDL084W GeneID:851475
KEGG:sce:YDL084W CYGD:YDL084w OMA:NNPLINC NextBio:968777
Genevestigator:Q07478 GermOnline:YDL084W Uniprot:Q07478
Length = 446
Score = 474 (171.9 bits), Expect = 2.0e-43, P = 2.0e-43
Identities = 113/357 (31%), Positives = 198/357 (55%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P ++G D + Q+KSG GK+ VFV++ L +L
Sbjct: 66 DFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLD 125
Query: 85 KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----- 139
+P + +++ RE+A QI + ++ ++ F GGT + + ++
Sbjct: 126 PVP-GEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTA 184
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
IVV +PGR+K +++ KY+++ V+ F++DE DK++ D+ I+ P KQ++
Sbjct: 185 PHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVM 244
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKK 255
+ SAT S + ++++ +PL I +D + L G++Q + E R ++ +K
Sbjct: 245 MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEE------R--EKNRK 296
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L QLL FNQ +IF R + + L +NF A + G Q+ R+A +FK +
Sbjct: 297 LAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFE 356
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
RI V+TD+ RGID ++L IN ++ ++A YLHR+GRAGR+GT+GL I+ VS++
Sbjct: 357 KRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSK 413
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 473 (171.6 bits), Expect = 2.5e-43, P = 2.5e-43
Identities = 107/345 (31%), Positives = 196/345 (56%)
Query: 31 PIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90
P+ + + + GF +PIQ A P +L G++ + Q+ +GTGK+ +++ L ++ + ++
Sbjct: 12 PLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQR--GKK 69
Query: 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPG 146
Q +I+ PTRE+A+Q+ D V +G ++K + + GG +ER ++ V+++VG+PG
Sbjct: 70 AQVLIVTPTRELALQVADEVAKLGKYLKVRALAVY-GGQAIERQIRGLRQGVEVIVGTPG 128
Query: 147 RIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDN 206
RI I K +++ I+DEAD++++ GF++DI I + L +Q L+ SAT
Sbjct: 129 RILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPI 188
Query: 207 LATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL-SQTPF 265
++K++ ++ + + ++Q+ +PE ++ + LV +L S+ P
Sbjct: 189 KTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPE--------TEKIEGLVSILNSELPI 240
Query: 266 NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325
Q ++F + R + + E L + A+ L G Q+ R ++ SFK GK +LV TD+A
Sbjct: 241 -QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVA 299
Query: 326 ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
ARG+D +V VIN +IP + +Y+HR+GR GR G G IT+++
Sbjct: 300 ARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLIN 344
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 473 (171.6 bits), Expect = 2.5e-43, P = 2.5e-43
Identities = 107/345 (31%), Positives = 196/345 (56%)
Query: 31 PIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90
P+ + + + GF +PIQ A P +L G++ + Q+ +GTGK+ +++ L ++ + ++
Sbjct: 12 PLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQR--GKK 69
Query: 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP----KRPVQIVVGSPG 146
Q +I+ PTRE+A+Q+ D V +G ++K + + GG +ER ++ V+++VG+PG
Sbjct: 70 AQVLIVTPTRELALQVADEVAKLGKYLKVRALAVY-GGQAIERQIRGLRQGVEVIVGTPG 128
Query: 147 RIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDN 206
RI I K +++ I+DEAD++++ GF++DI I + L +Q L+ SAT
Sbjct: 129 RILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPI 188
Query: 207 LATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL-SQTPF 265
++K++ ++ + + ++Q+ +PE ++ + LV +L S+ P
Sbjct: 189 KTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPE--------TEKIEGLVSILNSELPI 240
Query: 266 NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325
Q ++F + R + + E L + A+ L G Q+ R ++ SFK GK +LV TD+A
Sbjct: 241 -QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVA 299
Query: 326 ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
ARG+D +V VIN +IP + +Y+HR+GR GR G G IT+++
Sbjct: 300 ARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLIN 344
>GENEDB_PFALCIPARUM|PFB0445c [details] [associations]
symbol:PFB0445c "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
OMA:LECVINY Uniprot:Q9TY94
Length = 457
Score = 399 (145.5 bits), Expect = 3.9e-43, Sum P(2) = 3.9e-43
Identities = 95/285 (33%), Positives = 159/285 (55%)
Query: 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ------IVVGSPGRIK 149
LA TRE+A QI + ++KN+ + GG + + + + I++G+PGRI
Sbjct: 149 LAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHIKLFKEDNIPHIIIGTPGRIL 208
Query: 150 QMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLA 208
+I+ KYL D ++ F++DE DK + D+ I+ P KQ++ SAT + +
Sbjct: 209 ALIREKYLITDKIQHFVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRD 268
Query: 209 TLQKYMVDPLLIRPEDATR-PLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267
+K++ +P+ I +D + L G+ Q + E D+ +KL+++L FNQ
Sbjct: 269 VCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQE--------KDKTRKLIEILDALEFNQ 320
Query: 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327
+IF R + + L NF + + G +Q+ R+ D FK+ + RILV+TDL R
Sbjct: 321 VIIFVKSVTRAITLDKLLTECNFPSIAIHGGLEQQERIERYDKFKKFENRILVSTDLFGR 380
Query: 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
GID V++VIN ++P ++ +YLHR+GRAGR+GT+GL +T VS++
Sbjct: 381 GIDIERVNIVINYDMPENSDSYLHRVGRAGRFGTKGLAVTFVSSQ 425
Score = 105 (42.0 bits), Expect = 3.9e-43, Sum P(2) = 3.9e-43
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
D ++ + + + E+GF S +Q P + G D + Q+KSG GK+ VFV++ L +L
Sbjct: 59 DFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQL 117
>UNIPROTKB|Q9TY94 [details] [associations]
symbol:UAP56 "DEAD box helicase, UAP56" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
OMA:LECVINY Uniprot:Q9TY94
Length = 457
Score = 399 (145.5 bits), Expect = 3.9e-43, Sum P(2) = 3.9e-43
Identities = 95/285 (33%), Positives = 159/285 (55%)
Query: 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ------IVVGSPGRIK 149
LA TRE+A QI + ++KN+ + GG + + + + I++G+PGRI
Sbjct: 149 LAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHIKLFKEDNIPHIIIGTPGRIL 208
Query: 150 QMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLA 208
+I+ KYL D ++ F++DE DK + D+ I+ P KQ++ SAT + +
Sbjct: 209 ALIREKYLITDKIQHFVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRD 268
Query: 209 TLQKYMVDPLLIRPEDATR-PLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267
+K++ +P+ I +D + L G+ Q + E D+ +KL+++L FNQ
Sbjct: 269 VCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQE--------KDKTRKLIEILDALEFNQ 320
Query: 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327
+IF R + + L NF + + G +Q+ R+ D FK+ + RILV+TDL R
Sbjct: 321 VIIFVKSVTRAITLDKLLTECNFPSIAIHGGLEQQERIERYDKFKKFENRILVSTDLFGR 380
Query: 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
GID V++VIN ++P ++ +YLHR+GRAGR+GT+GL +T VS++
Sbjct: 381 GIDIERVNIVINYDMPENSDSYLHRVGRAGRFGTKGLAVTFVSSQ 425
Score = 105 (42.0 bits), Expect = 3.9e-43, Sum P(2) = 3.9e-43
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
D ++ + + + E+GF S +Q P + G D + Q+KSG GK+ VFV++ L +L
Sbjct: 59 DFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQL 117
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 458 (166.3 bits), Expect = 4.5e-43, Sum P(2) = 4.5e-43
Identities = 129/495 (26%), Positives = 240/495 (48%)
Query: 20 VLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAA 79
+ F+ D + + + ++ GF + +PIQ P L D I Q+++GTGK+ F +
Sbjct: 3 ITFQ-DFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPL 61
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIG---GTQVERPKR 136
+ K I Q I++APTRE+A+Q+++ + +G + + + G G Q+ K+
Sbjct: 62 VEK-INPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKK 120
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQML 196
I+VG+PGR+ I + + + +V ++DEAD+++N GF+EDI I S +P Q L
Sbjct: 121 NPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTL 180
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT +++M +P ++ + + ++Q + E K D +L
Sbjct: 181 LFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKK-----FDTLTRL 235
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ + Q+P ++F + R + + E L + AE + G Q R+ +L FK+G +
Sbjct: 236 LDI--QSP-ELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAI 292
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA--ESL 374
+LV TD+AARG+D + V V N ++P D +Y+HR+GR GR G G+ +T ++ + +
Sbjct: 293 EVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDM 352
Query: 375 VKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKP-----LDQAQER-EDVE 428
++ + +D + + + G Q R++T++ + + A E ED +
Sbjct: 353 LRAIEQTTKRKMDR-MKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDHD 411
Query: 429 QTAEESSKVEN-TKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENGS 487
++ ++ TK P + +T++ + N S+ GK N S
Sbjct: 412 SVTVVAAAIKMMTKEPDNTPVR-LTEEAPLRTKRNKNHHHRSSKRRDGGGYRGK--NNRS 468
Query: 488 QRGSKRSKEFKTQEK 502
KRS + Q+K
Sbjct: 469 SYDKKRSSNDRRQKK 483
Score = 45 (20.9 bits), Expect = 4.5e-43, Sum P(2) = 4.5e-43
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 1092 LRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKSS-DAKQ 1133
LR K H R+SK+R ++N +S +++SS D +Q
Sbjct: 440 LRTKRNKNHH-HRSSKRRDGGGYRGKNNRSSYDKKRSSNDRRQ 481
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 470 (170.5 bits), Expect = 5.3e-43, P = 5.3e-43
Identities = 122/370 (32%), Positives = 193/370 (52%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV + FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GT
Sbjct: 87 KTSDVTATKGNEFE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGT 145
Query: 70 GKSIVFVVAALNKLIKLPVQQPQT-IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG 128
GKS +++ L + I L Q +++ PTRE+A+Q++ + V H+ + V GG
Sbjct: 146 GKSGAYLIPLLER-IDLKKDSIQAAVVIVPTRELALQVSQICIQVSKHMGGVKVMATTGG 204
Query: 129 TQVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITW 184
T + R V +V+ +PGRI +IK + V++ ++DEADKL++ FV+ +
Sbjct: 205 TNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVGQVQMIVLDEADKLLSQDFVQMMEE 264
Query: 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECK 243
I S L +Q+L+ SAT+ + ++ P I E+ T L GV Q A
Sbjct: 265 ILSSLSKQRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELT--LKGVTQYYA------ 316
Query: 244 NPSLRYVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQD 300
YV E +K L L S+ NQ +IF N R E++ + ++ + Y+
Sbjct: 317 -----YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMR 371
Query: 301 QKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG 360
Q+ R F+ G R LV TDL RGID V++VIN + P TYLHR+GR+GR+G
Sbjct: 372 QEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGRFG 431
Query: 361 TRGLVITIVS 370
GL I +++
Sbjct: 432 HLGLAINLIT 441
>FB|FBgn0004419 [details] [associations]
symbol:me31B "maternal expression at 31B" species:7227
"Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
Uniprot:P23128
Length = 459
Score = 463 (168.0 bits), Expect = 5.7e-43, Sum P(2) = 5.7e-43
Identities = 117/384 (30%), Positives = 200/384 (52%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV FE + +++ + G+ E G+ + SPIQ AA P L+G D + ++K+GT
Sbjct: 48 KTTDVTDTRGNEFE-EFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGT 106
Query: 70 GKSIVFVVAALNKLIKLPVQQP-QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG 128
GK+ + + L ++ P + Q +++ PTRE+A+Q + + + H+ ++ V GG
Sbjct: 107 GKTGAYCIPVLEQID--PTKDYIQALVMVPTRELALQTSQICIELAKHL-DIRVMVTTGG 163
Query: 129 T----QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITW 184
T + R + VQ+++ +PGRI ++ K +M R+ ++DEADKL++ F +
Sbjct: 164 TILKDDILRIYQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDH 223
Query: 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECK 243
+ +LP Q+L+ SAT+ ++K++ +P I E+ T L GV Q A + E +
Sbjct: 224 VILKLPKDPQILLFSATFPLTVKNFMEKHLREPYEINLMEELT--LKGVTQYYAFVQERQ 281
Query: 244 NPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKA 303
L L S+ NQ +IF N R E++ + + + Y+ Q
Sbjct: 282 KVHC--------LNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAH 333
Query: 304 RLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG 363
R F++G R LV +DL RGID V++VIN + P A TYLHR+GR+GR+G G
Sbjct: 334 RNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLG 393
Query: 364 LVITIVSAESLVKFHSLMGEINLD 387
+ I +++ E H + E+ +
Sbjct: 394 IAINLITYEDRFDLHRIEKELGTE 417
Score = 39 (18.8 bits), Expect = 5.7e-43, Sum P(2) = 5.7e-43
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 1128 SSDAKQAANEEENIT 1142
+SD +ANEE N++
Sbjct: 444 NSDLNNSANEEGNVS 458
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 456 (165.6 bits), Expect = 5.8e-43, Sum P(2) = 5.8e-43
Identities = 115/347 (33%), Positives = 185/347 (53%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQP 91
+ G+ G+ +PIQ A P V+ G D + +++GTGK+ F + L++L + +
Sbjct: 12 VATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQGERGRV 71
Query: 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIG-GT--QVERPKRPVQIVVGSPGRI 148
+ +++APTRE+A QI D ++G + V + G G QV++ K ++VV PGR+
Sbjct: 72 RALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPGRL 131
Query: 149 KQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLA 208
I +++ + + ++DEAD++ + GF+ DI + LPP +Q L+ SAT D
Sbjct: 132 LDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPIDIRT 191
Query: 209 TLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK---LVQLLSQTPF 265
Q +VDP+ ++ P + V AL P V++ K L++LL T
Sbjct: 192 LAQDILVDPVTVQV-GTVAPAVTVAH--ALYP---------VEQHLKTPLLLELLRHTDT 239
Query: 266 NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325
+IF+ + R + + E L A + A L G Q R A+LD F+ G +ILV TD+A
Sbjct: 240 ESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIA 299
Query: 326 ARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
ARGID + V VIN +IP A Y+HR+GR GR G T+V+++
Sbjct: 300 ARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSD 346
Score = 46 (21.3 bits), Expect = 5.8e-43, Sum P(2) = 5.8e-43
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 1885 DEPESYDVSWRTCSSESAAREKNSGQRSRGSGDKAARKSASLPAS 1929
++P+ + +S + K+SG+R G G A+ S P S
Sbjct: 398 NQPKKGGAAASPSASGRPSHPKDSGRRQPGQGAPASGPSRQRPGS 442
Score = 38 (18.4 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
Identities = 16/61 (26%), Positives = 21/61 (34%)
Query: 1798 DVEGENSPTD--EDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNSRCQ 1855
DVE P + + N G + A S S SH +S G SR +
Sbjct: 380 DVEFARPPREPRQARPHANQPKKGGAAASPSASGRPSHPKDSGRRQPGQGAPASGPSRQR 439
Query: 1856 P 1856
P
Sbjct: 440 P 440
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 468 (169.8 bits), Expect = 8.6e-43, P = 8.6e-43
Identities = 116/368 (31%), Positives = 194/368 (52%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV V FE D + + + G+ E G+ K SPIQ A+ L G D + ++K+GT
Sbjct: 33 KTADVTDTKGVEFE-DFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGT 91
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ + + + K I+ ++ Q +++ PTRE+A+Q + + + H++ L V GGT
Sbjct: 92 GKTGAYCIPVIEK-IQPALKAIQAMVIVPTRELALQTSQICVELSKHIQ-LKVMVTTGGT 149
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +V+ +PGRI +++ M+ + ++DEADKL++ F + +
Sbjct: 150 DLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRL 209
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
+ LP +Q+++ SAT+ + + +QK+M P I E+ T LLGV Q A + E +
Sbjct: 210 INFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELT--LLGVTQYYAFVQEKQK 267
Query: 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
L L + NQ +IF N R E++ + + + Y+ Q R
Sbjct: 268 VHC--------LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHR 319
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
F++G R LV +DL RGID V++VIN + P +A TYLHR+GR+GR+G G+
Sbjct: 320 NRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGV 379
Query: 365 VITIVSAE 372
I +++ E
Sbjct: 380 AINLITYE 387
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 468 (169.8 bits), Expect = 8.6e-43, P = 8.6e-43
Identities = 116/368 (31%), Positives = 194/368 (52%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T DV V FE D + + + G+ E G+ K SPIQ A+ L G D + ++K+GT
Sbjct: 33 KTADVTDTKGVEFE-DFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGT 91
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ + + + K I+ ++ Q +++ PTRE+A+Q + + + H++ L V GGT
Sbjct: 92 GKTGAYCIPVIEK-IQPALKAIQAMVIVPTRELALQTSQICVELSKHIQ-LKVMVTTGGT 149
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V +V+ +PGRI +++ M+ + ++DEADKL++ F + +
Sbjct: 150 DLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRL 209
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKN 244
+ LP +Q+++ SAT+ + + +QK+M P I E+ T LLGV Q A + E +
Sbjct: 210 INFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELT--LLGVTQYYAFVQEKQK 267
Query: 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
L L + NQ +IF N R E++ + + + Y+ Q R
Sbjct: 268 VHC--------LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHR 319
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
F++G R LV +DL RGID V++VIN + P +A TYLHR+GR+GR+G G+
Sbjct: 320 NRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGV 379
Query: 365 VITIVSAE 372
I +++ E
Sbjct: 380 AINLITYE 387
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 449 (163.1 bits), Expect = 1.2e-42, Sum P(2) = 1.2e-42
Identities = 126/441 (28%), Positives = 215/441 (48%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+++ +++ + + LQ+ GF + + IQ AA P L+G D + + +GTGK+ +++ AL L
Sbjct: 7 SELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHL 66
Query: 84 IKLPVQQ---PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKR 136
+ P ++ P+ +IL PTRE+A+Q++D R + H +L + GG E
Sbjct: 67 LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHT-HLDIATITGGVAYMNHAEVFSE 125
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQML 196
IVV + GR+ Q IK + + +V I+DEAD++++ GF +DI I + KQ L
Sbjct: 126 NQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL 185
Query: 197 VVSATYSHDNLATL-QKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
+ SAT D + ++ + DP+ + +TR + Q + ++ +
Sbjct: 186 LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTAL------- 238
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
LV LL Q + ++F + R + L A YL G Q R ++ G+
Sbjct: 239 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 298
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV 375
V +LV TD+AARGID +V V N ++P TYLHR+GR R G +G I++V A
Sbjct: 299 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD-- 356
Query: 376 KFHSLMGEIN--LDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEE 433
H L+G++ ++ ++ D L + QT KP + + ++ A+E
Sbjct: 357 --HLLLGKVGRYIEEPIKARVI-DELR-PKTRAPSEKQT--GKPSKKVLAKRAEKKKAKE 410
Query: 434 SSKVENTKPLRGAPSKEVTKK 454
K K R +K + K+
Sbjct: 411 KEKPRVKK--RHRDTKNIGKR 429
Score = 50 (22.7 bits), Expect = 1.2e-42, Sum P(2) = 1.2e-42
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 445 GAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGK 481
G PSK+V K A K+ K + D++N GK
Sbjct: 392 GKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGK 428
Score = 42 (19.8 bits), Expect = 8.4e-42, Sum P(2) = 8.4e-42
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 894 RTKRRSRPRKNKENTDILNTLGQDKTSAHGRTP 926
+ K + +PR K + D N + K S G P
Sbjct: 407 KAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPP 439
Score = 37 (18.1 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 1048 EKKSRRELSQKMDSDRYRPDSDGDPNRRPS 1077
EKK +E + R+R + R+PS
Sbjct: 404 EKKKAKEKEKPRVKKRHRDTKNIGKRRKPS 433
Score = 37 (18.1 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 1074 RRPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKSS 1129
R PS +++ + + K +K K + + KKRH R N R K S
Sbjct: 384 RAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH------RDTKNIGKRRKPS 433
>DICTYBASE|DDB_G0269932 [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0000348 "mRNA
branch site recognition" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269932
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12812 GO:GO:0000348 RefSeq:XP_646415.1
ProteinModelPortal:Q55CR6 SMR:Q55CR6 PRIDE:Q55CR6
EnsemblProtists:DDB0233387 GeneID:8617372 KEGG:ddi:DDB_G0269932
InParanoid:Q55CR6 OMA:GGANMNP ProtClustDB:CLSZ2429041
Uniprot:Q55CR6
Length = 428
Score = 464 (168.4 bits), Expect = 2.3e-42, P = 2.3e-42
Identities = 119/357 (33%), Positives = 193/357 (54%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
+ L++ + + + + GF S +Q P + G D I Q+KSG GK+ VFV++ L ++
Sbjct: 52 EFLLKPELERVIGDCGFEHPSEVQNECIPQAILGTDVICQAKSGMGKTAVFVLSTLQQID 111
Query: 85 KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE------RPKRPV 138
P T++L TRE+A QI D ++ N+ GG V+ + K+P
Sbjct: 112 NNP-NGITTLVLCNTRELAYQICDEFDRFTKYLPNVKTAVIYGGIPVQTHKDLIKEKKP- 169
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
I++G+PGRI Q+ L++ ++ FI+DE D ++ + +D+ I+ +P KQ+++
Sbjct: 170 NIIIGTPGRILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMM 229
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQL-VALIPECKNPSLRYVDEEKK 255
SAT S +K+M +PL I D ++ L G++Q V + E KN KK
Sbjct: 230 FSATLSDTIRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKN---------KK 280
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L++LL FNQ VIF R + + + L + F + + DQK R+ FK +
Sbjct: 281 LIELLDSLDFNQAVIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFE 340
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
RI+V T++ RGID V++VIN ++ A TYLHR+GRAGR+GT+GL I+ V ++
Sbjct: 341 SRIMVATNIFGRGIDIERVNVVINYDMAESADTYLHRVGRAGRFGTKGLAISFVPSK 397
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 463 (168.0 bits), Expect = 2.9e-42, P = 2.9e-42
Identities = 118/402 (29%), Positives = 204/402 (50%)
Query: 31 PIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90
P+ L E G+V +P+Q A P VL+G D + + +G+GK+ F + L +L +
Sbjct: 19 PLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSAD 78
Query: 91 PQT-----IILAPTREIAVQITDVVRSVGAHVKN-LHVDYFIGGT----QVERPKRPVQI 140
++L PTRE+A Q+ D S +H L + GG Q++ + +
Sbjct: 79 KSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200
+V +PGR+ ++ L + V F++DEAD++++ GF E++ + + LP KQ L+ SA
Sbjct: 139 LVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSA 198
Query: 201 TYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL 260
T+ + A K + PL + ++Q V + + +L L L+
Sbjct: 199 TFPEEVRALTTKLLHQPLEYHLQSEQEST--IEQRVITVNREQKTAL--------LAHLI 248
Query: 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320
Q ++Q +IF + + + + L+ AE G + Q AR LD FK G++ +L+
Sbjct: 249 KQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308
Query: 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380
TD+AARGID + +VIN ++P A Y+HR+GR+GR G GL +T++S E ++H
Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHE---EYHHF 365
Query: 381 MGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQ 422
G I + + LV + + G + N ++ +LA+ QA+
Sbjct: 366 -GVIEKKN--KIKLVREQIPGFEANAEIPLE-VLAQEKPQAK 403
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 463 (168.0 bits), Expect = 2.9e-42, P = 2.9e-42
Identities = 110/381 (28%), Positives = 202/381 (53%)
Query: 15 LSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIV 74
+S + + F + + ++ + L E G +PIQ A P+VL G D + +++GTGK+
Sbjct: 1 MSELSITF-SQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAA 59
Query: 75 FVVAALNKLIKLPVQQP------QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG 128
F + + + I+ P Q+ + ++L PTRE+A Q+ D +++ A L + GG
Sbjct: 60 FGLPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAY-AKGTELKIVAVYGG 118
Query: 129 T----QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITW 184
T Q+ + V I++ +PGR+ +K L + V + ++DEAD++++ GF+ D+
Sbjct: 119 TSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR 178
Query: 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKN 244
+ +L P++Q L SAT+ A + M DP+ ++ + V+Q+V + + +
Sbjct: 179 VLRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRK 238
Query: 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
L L L+ + Q ++F+ + + + E L A ++G + Q AR
Sbjct: 239 REL--------LSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGAR 290
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
+LD FK GKVR L+ TD+AARG+D A ++ V+N ++P A Y+HR+GR GR G GL
Sbjct: 291 QKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGL 350
Query: 365 VITIVSAESLVKFHSLMGEIN 385
++++S + + ++ +N
Sbjct: 351 AVSLLSHDEQPQLEAIERLLN 371
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 463 (168.0 bits), Expect = 2.9e-42, P = 2.9e-42
Identities = 118/402 (29%), Positives = 204/402 (50%)
Query: 31 PIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ 90
P+ L E G+V +P+Q A P VL+G D + + +G+GK+ F + L +L +
Sbjct: 19 PLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSAD 78
Query: 91 PQT-----IILAPTREIAVQITDVVRSVGAHVKN-LHVDYFIGGT----QVERPKRPVQI 140
++L PTRE+A Q+ D S +H L + GG Q++ + +
Sbjct: 79 KSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSA 200
+V +PGR+ ++ L + V F++DEAD++++ GF E++ + + LP KQ L+ SA
Sbjct: 139 LVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSA 198
Query: 201 TYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL 260
T+ + A K + PL + ++Q V + + +L L L+
Sbjct: 199 TFPEEVRALTTKLLHQPLEYHLQSEQEST--IEQRVITVNREQKTAL--------LAHLI 248
Query: 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320
Q ++Q +IF + + + + L+ AE G + Q AR LD FK G++ +L+
Sbjct: 249 KQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308
Query: 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380
TD+AARGID + +VIN ++P A Y+HR+GR+GR G GL +T++S E ++H
Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHE---EYHHF 365
Query: 381 MGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQ 422
G I + + LV + + G + N ++ +LA+ QA+
Sbjct: 366 -GVIEKKN--KIKLVREQIPGFEANAEIPLE-VLAQEKPQAK 403
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 463 (168.0 bits), Expect = 2.9e-42, P = 2.9e-42
Identities = 110/381 (28%), Positives = 202/381 (53%)
Query: 15 LSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIV 74
+S + + F + + ++ + L E G +PIQ A P+VL G D + +++GTGK+
Sbjct: 1 MSELSITF-SQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAA 59
Query: 75 FVVAALNKLIKLPVQQP------QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG 128
F + + + I+ P Q+ + ++L PTRE+A Q+ D +++ A L + GG
Sbjct: 60 FGLPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAY-AKGTELKIVAVYGG 118
Query: 129 T----QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITW 184
T Q+ + V I++ +PGR+ +K L + V + ++DEAD++++ GF+ D+
Sbjct: 119 TSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR 178
Query: 185 IYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKN 244
+ +L P++Q L SAT+ A + M DP+ ++ + V+Q+V + + +
Sbjct: 179 VLRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRK 238
Query: 245 PSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
L L L+ + Q ++F+ + + + E L A ++G + Q AR
Sbjct: 239 REL--------LSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGAR 290
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
+LD FK GKVR L+ TD+AARG+D A ++ V+N ++P A Y+HR+GR GR G GL
Sbjct: 291 QKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGL 350
Query: 365 VITIVSAESLVKFHSLMGEIN 385
++++S + + ++ +N
Sbjct: 351 AVSLLSHDEQPQLEAIERLLN 371
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 457 (165.9 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
Identities = 124/446 (27%), Positives = 224/446 (50%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D+ + + + + +++ G+ SPIQ A P V++G D + +++GTGK+ F + L +L
Sbjct: 10 DLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLS 69
Query: 85 -----KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPK 135
K+ + +IL PTRE+A QI++ + G ++ NLH GG Q+ R +
Sbjct: 70 SSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYL-NLHSMVVFGGVKINPQIARLR 128
Query: 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195
+ V ++V +PGR+ + + + + +FI+DEAD++++ GF+ DI + + LP +Q
Sbjct: 129 QGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQN 188
Query: 196 LVVSATYSHDNLATLQKYMVD-PLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254
L+ SAT+S + + L K MV+ PL I + V Q + + + + P++
Sbjct: 189 LLFSATFSPE-IRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAV------- 240
Query: 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
L L+ + + Q ++F+ + + ++L A + G + Q AR +L +FK G
Sbjct: 241 -LTHLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDG 299
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
V+ILV TD+AARGID + V+N ++P+ Y+HR+GR R G G +++V A+ L
Sbjct: 300 SVKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADEL 359
Query: 375 VKFHSLMGEI--NLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAE 432
+ I +++ +P N G+ RV KPL Q + + +
Sbjct: 360 DLLWGIEHVIQQHIERKVIEKFIPANELGES-----RV----IKPLKQGKPPKSAKPHGA 410
Query: 433 ESSKVENTKPLRGAPSKEVTKKGASK 458
+VE+ R + G +K
Sbjct: 411 GKGRVEHKDGQRSGRNANGNNAGGNK 436
Score = 37 (18.1 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 505 KGAGEDENGDRKASKDEQKIDGANSAEKSLEDKHGKK 541
KG E ++G R G N A+ + KK
Sbjct: 412 KGRVEHKDGQRSGRNANGNNAGGNKAKPGNDSSRRKK 448
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 461 (167.3 bits), Expect = 4.8e-42, P = 4.8e-42
Identities = 129/396 (32%), Positives = 209/396 (52%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D + + + L++ GF +PIQ A P L G D Q+++GTGK++ F+ + + L
Sbjct: 12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYL 71
Query: 84 IKLP------VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVER 133
+ P V QP+ +I+APTRE+AVQI + A L + GG Q++
Sbjct: 72 LSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPL-AEATGLKLGLAYGGDGYDKQLKV 130
Query: 134 PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193
+ V I++G+ GR+ K ++N+ ++++ ++DEAD++ + GF++DI W++ ++PP
Sbjct: 131 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190
Query: 194 QML--VVSATYSHD--NLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRY 249
Q L + SAT S+ LA Q + + + PE T +K+ E PS
Sbjct: 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHR--IKE------ELFYPS--- 239
Query: 250 VDEEK-KLVQLLSQTPF-NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307
+EEK +L+Q L + + ++ +IF+N + R E I +LA L+G QK RL
Sbjct: 240 -NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRI 298
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
LD F RG + ILV TD+AARG+ V V N ++P D Y+HR+GR GR G G I+
Sbjct: 299 LDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS 358
Query: 368 IVSAESLVKFHSLMGEINLDHAFNVGLV-PDNLTGD 402
+ E + ++ E + H+ V PD L D
Sbjct: 359 LACEEYALNLPAI--ETYIGHSIPVSKYNPDALMTD 392
>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
symbol:PFC0915w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
Uniprot:O97285
Length = 433
Score = 461 (167.3 bits), Expect = 4.8e-42, P = 4.8e-42
Identities = 118/382 (30%), Positives = 190/382 (49%)
Query: 10 RTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGT 69
+T+DV FE D +++ + G+ E G+ K SPIQ + P L G + + ++K+GT
Sbjct: 50 KTEDVTKTKGNEFE-DYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGT 108
Query: 70 GKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT 129
GK+ F + L K Q +IL PTRE+A+Q + +++ +G H+K + GGT
Sbjct: 109 GKTAAFAIPLLEKC-NTHKNFIQGLILVPTRELALQTSAMIKELGKHMK-VQCMVTTGGT 166
Query: 130 QVE----RPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWI 185
+ R V I+ G+PGRI + N+ + +MDEADKL++ F + +
Sbjct: 167 SLREDIMRLYNVVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEEL 226
Query: 186 YSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNP 245
LP KQ+L+ SAT+ Y+ D I D L G+ Q A + E +
Sbjct: 227 MKFLPKEKQILMYSATFPVTVKEFRAIYLSDAHEINLMDELT-LKGITQYYAFVKERQKV 285
Query: 246 SLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
L L ++ NQ +IF N R E++ + + + + Y+ Q R
Sbjct: 286 HC--------LNTLFAKLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRN 337
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
F+ G R LV++DL RGID +V++VIN + P ++ TYLHR+GR+GRYG GL
Sbjct: 338 RVFHDFRNGACRCLVSSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLA 397
Query: 366 ITIVSAESLVKFHSLMGEINLD 387
I +++ E + + E+ +
Sbjct: 398 INLITFEDRFNLYKIEVELGTE 419
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 455 (165.2 bits), Expect = 5.1e-42, Sum P(2) = 5.1e-42
Identities = 118/382 (30%), Positives = 206/382 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D+ + ++Q L ENGF +PIQ + P +L D Q+++GTGK++ F+VA N L+
Sbjct: 13 DLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLL 72
Query: 85 K--LP----VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ--VERP-- 134
+P + QP+ II+APTRE+A+QI + H + L V GG V+R
Sbjct: 73 SSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTR-LKVGIVYGGESYDVQRKVL 131
Query: 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ 194
+ V I++G+ GRI ++ +N+++++ ++DEAD++ + GF++DI +++ ++P Q
Sbjct: 132 DQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQ 191
Query: 195 ML--VVSATYSHDNLATLQKYMVDPLLIR--PEDATRPLLGVKQLVALIPECKNPSLRYV 250
L + SAT S +M DP+ + PE+ T +K+ E PS
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSK--NIKE------EIFYPSQE-- 241
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
D+ + L+ L+ + + ++FSN + E + L L+G QK R+ L+
Sbjct: 242 DKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQ 301
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
F +G++ ILV TD+AARG+ ++V V N ++P D Y+HR+GR GR G +G+ ++
Sbjct: 302 FTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFAC 361
Query: 371 AESLVKFHSLMGEINLDHAFNV 392
E + ++ E ++H+ V
Sbjct: 362 EEYALNLPAI--ETYINHSIPV 381
Score = 38 (18.4 bits), Expect = 5.1e-42, Sum P(2) = 5.1e-42
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 924 RTPSGGHRTPERRRSDG 940
R SG RTP RS G
Sbjct: 411 RERSGAGRTPGAHRSGG 427
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 455 (165.2 bits), Expect = 5.1e-42, Sum P(2) = 5.1e-42
Identities = 118/382 (30%), Positives = 206/382 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D+ + ++Q L ENGF +PIQ + P +L D Q+++GTGK++ F+VA N L+
Sbjct: 13 DLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLL 72
Query: 85 K--LP----VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ--VERP-- 134
+P + QP+ II+APTRE+A+QI + H + L V GG V+R
Sbjct: 73 SSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTR-LKVGIVYGGESYDVQRKVL 131
Query: 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ 194
+ V I++G+ GRI ++ +N+++++ ++DEAD++ + GF++DI +++ ++P Q
Sbjct: 132 DQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQ 191
Query: 195 ML--VVSATYSHDNLATLQKYMVDPLLIR--PEDATRPLLGVKQLVALIPECKNPSLRYV 250
L + SAT S +M DP+ + PE+ T +K+ E PS
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSK--NIKE------EIFYPSQE-- 241
Query: 251 DEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDS 310
D+ + L+ L+ + + ++FSN + E + L L+G QK R+ L+
Sbjct: 242 DKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQ 301
Query: 311 FKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
F +G++ ILV TD+AARG+ ++V V N ++P D Y+HR+GR GR G +G+ ++
Sbjct: 302 FTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFAC 361
Query: 371 AESLVKFHSLMGEINLDHAFNV 392
E + ++ E ++H+ V
Sbjct: 362 EEYALNLPAI--ETYINHSIPV 381
Score = 38 (18.4 bits), Expect = 5.1e-42, Sum P(2) = 5.1e-42
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 924 RTPSGGHRTPERRRSDG 940
R SG RTP RS G
Sbjct: 411 RERSGAGRTPGAHRSGG 427
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 452 (164.2 bits), Expect = 5.1e-42, Sum P(2) = 5.1e-42
Identities = 142/452 (31%), Positives = 225/452 (49%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D ++ + GL++ GFV +PIQ A P +L+G D Q+++GTGK++ F+ A N L+
Sbjct: 13 DFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLL 72
Query: 85 KLPVQ------QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERP 134
P QP+ II+APTRE+A+QI + + A L GG Q+ +
Sbjct: 73 TTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAST-GLKAALAYGGESYDKQLAKL 131
Query: 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ 194
+ V I++G+ GRI K + N++ ++ ++DEAD++ + GF++DI +++ ++P K
Sbjct: 132 QSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191
Query: 195 ML--VVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
L + SAT S+ ++M +P +++ PE T G + I E L Y
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKT----GHR-----IQE----ELFYP 238
Query: 251 DEEKK--LVQLLSQTPF-NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307
E K L+Q L + + ++ +IF+N + R E I +LA N L+G QK R
Sbjct: 239 SNEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERI 298
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
L+ F +G V ILV TD+AARG+ V V N ++P D Y+HR+GR GR G G I+
Sbjct: 299 LEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS 358
Query: 368 IVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLD---QAQER 424
E + ++ E ++HA +P T D + T L PL Q+R
Sbjct: 359 FACEEYAINLPAI--ESYIEHA-----IP---TSDYD--PSALLTDLPAPLSLRSSPQQR 406
Query: 425 EDVEQTAEESSKVENTKPLRGAPSKEVTKKGA 456
+ S+ N KP + P KK A
Sbjct: 407 RTNTAGSRNSNNGGNRKPQQRRPRAPRPKKEA 438
Score = 41 (19.5 bits), Expect = 5.1e-42, Sum P(2) = 5.1e-42
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 916 QDKTSAHGRTPS--GGHRTPERRR 937
Q +T+ G S GG+R P++RR
Sbjct: 405 QRRTNTAGSRNSNNGGNRKPQQRR 428
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 452 (164.2 bits), Expect = 5.1e-42, Sum P(2) = 5.1e-42
Identities = 142/452 (31%), Positives = 225/452 (49%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D ++ + GL++ GFV +PIQ A P +L+G D Q+++GTGK++ F+ A N L+
Sbjct: 13 DFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLL 72
Query: 85 KLPVQ------QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERP 134
P QP+ II+APTRE+A+QI + + A L GG Q+ +
Sbjct: 73 TTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAST-GLKAALAYGGESYDKQLAKL 131
Query: 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ 194
+ V I++G+ GRI K + N++ ++ ++DEAD++ + GF++DI +++ ++P K
Sbjct: 132 QSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191
Query: 195 ML--VVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
L + SAT S+ ++M +P +++ PE T G + I E L Y
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKT----GHR-----IQE----ELFYP 238
Query: 251 DEEKK--LVQLLSQTPF-NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307
E K L+Q L + + ++ +IF+N + R E I +LA N L+G QK R
Sbjct: 239 SNEHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERI 298
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
L+ F +G V ILV TD+AARG+ V V N ++P D Y+HR+GR GR G G I+
Sbjct: 299 LEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS 358
Query: 368 IVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLD---QAQER 424
E + ++ E ++HA +P T D + T L PL Q+R
Sbjct: 359 FACEEYAINLPAI--ESYIEHA-----IP---TSDYD--PSALLTDLPAPLSLRSSPQQR 406
Query: 425 EDVEQTAEESSKVENTKPLRGAPSKEVTKKGA 456
+ S+ N KP + P KK A
Sbjct: 407 RTNTAGSRNSNNGGNRKPQQRRPRAPRPKKEA 438
Score = 41 (19.5 bits), Expect = 5.1e-42, Sum P(2) = 5.1e-42
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 916 QDKTSAHGRTPS--GGHRTPERRR 937
Q +T+ G S GG+R P++RR
Sbjct: 405 QRRTNTAGSRNSNNGGNRKPQQRR 428
>UNIPROTKB|I3L352 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:25628 EMBL:AC012184
Ensembl:ENST00000575878 Uniprot:I3L352
Length = 396
Score = 457 (165.9 bits), Expect = 1.3e-41, P = 1.3e-41
Identities = 129/405 (31%), Positives = 209/405 (51%)
Query: 19 DVLFENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVF 75
D LI KP + QG+ GF + S IQ A P +L + I QS+SGTGK+ F
Sbjct: 6 DFWMSGTFLIRKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAF 65
Query: 76 VVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK 135
V+A L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER +
Sbjct: 66 VLAMLSR-VEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ 124
Query: 136 R-PVQIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPM 192
+ QIV+G+PG + KLK+++ +++F++DEAD +I T G + I LP
Sbjct: 125 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 184
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252
QML+ SAT+ QK + DP +I+ + L +KQ L C + ++
Sbjct: 185 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL---CSSRDEKF--- 238
Query: 253 EKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFK 312
+ L L Q +IF + + + L+ LSG + R A ++ F+
Sbjct: 239 -QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 297
Query: 313 RGKVRILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVI 366
GK ++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL +
Sbjct: 298 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 357
Query: 367 TIVSAESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
+V ++ HS M +N + FN + + L D ++ +++
Sbjct: 358 NMVDSK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 394
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 440 (159.9 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 110/356 (30%), Positives = 183/356 (51%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F N L K +R+ L G+ + +Q P L D +V+S++G+GK+ F + L
Sbjct: 6 FSNYAL-SKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIP-LC 63
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK----RP 137
++++ +PQ ++L PTRE+AVQ+ + + ++G K + G + R K +
Sbjct: 64 EMVEWEENKPQALVLTPTRELAVQVKEDITNIG-RFKRIKAAAIYGKSPFARQKLELKQK 122
Query: 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
IVVG+PGR+ I+ L+++ ++ ++DEAD+++N GF++ + I +LP + ++
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257
SAT D + YM P I + A + + +L V EE+KL
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAA-----------GITTDKIEHTLFEVREEEKLS 231
Query: 258 QLLSQTPF---NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
L T + C+IF Q + + L N+ + + G Q+ R +D F++G
Sbjct: 232 LLKDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKG 291
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
K R LV TD+AARGID N+ VIN +IP + +Y+HR GR GR G G IT ++
Sbjct: 292 KFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFIT 347
Score = 49 (22.3 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 442 PLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDG--KPDENGSQRGSKRSKEFKT 499
P APSKE KG + K +++S N G K NG ++ R+ +F
Sbjct: 366 PKANAPSKEEVMKGKAAFEEKIQAKPTIKKDKSADINKGIMKLYFNGGKKKKIRAVDFVG 425
Query: 500 QEKCVKGAGEDENG 513
++G ++ G
Sbjct: 426 TIAKIQGVSAEDIG 439
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 440 (159.9 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 110/356 (30%), Positives = 183/356 (51%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F N L K +R+ L G+ + +Q P L D +V+S++G+GK+ F + L
Sbjct: 6 FSNYAL-SKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIP-LC 63
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK----RP 137
++++ +PQ ++L PTRE+AVQ+ + + ++G K + G + R K +
Sbjct: 64 EMVEWEENKPQALVLTPTRELAVQVKEDITNIG-RFKRIKAAAIYGKSPFARQKLELKQK 122
Query: 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
IVVG+PGR+ I+ L+++ ++ ++DEAD+++N GF++ + I +LP + ++
Sbjct: 123 THIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTML 182
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257
SAT D + YM P I + A + + +L V EE+KL
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEIKAA-----------GITTDKIEHTLFEVREEEKLS 231
Query: 258 QLLSQTPF---NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
L T + C+IF Q + + L N+ + + G Q+ R +D F++G
Sbjct: 232 LLKDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKG 291
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
K R LV TD+AARGID N+ VIN +IP + +Y+HR GR GR G G IT ++
Sbjct: 292 KFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFIT 347
Score = 49 (22.3 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 442 PLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDG--KPDENGSQRGSKRSKEFKT 499
P APSKE KG + K +++S N G K NG ++ R+ +F
Sbjct: 366 PKANAPSKEEVMKGKAAFEEKIQAKPTIKKDKSADINKGIMKLYFNGGKKKKIRAVDFVG 425
Query: 500 QEKCVKGAGEDENG 513
++G ++ G
Sbjct: 426 TIAKIQGVSAEDIG 439
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 421 (153.3 bits), Expect = 1.6e-41, Sum P(3) = 1.6e-41
Identities = 104/352 (29%), Positives = 180/352 (51%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D + + I + + E+G+ +PIQ A P++L G D +++GTGK+ FV+ + +L
Sbjct: 8 DFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRLS 67
Query: 85 --KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK----RPV 138
+ + P+ +IL PTRE+A Q+ + G ++K L + IGG + + R V
Sbjct: 68 TGRARARMPRCLILCPTRELAAQVAENFEKYGKYLK-LTMALLIGGVSFKEQETLLQRGV 126
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198
+++ +PGR+ L M V I+DEAD++++ GF+ DI I ++LP +Q L+
Sbjct: 127 DVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLF 186
Query: 199 SATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ 258
SAT+ D + + DP I + TRP + + + K P+ L +
Sbjct: 187 SATFPTDIQRLAKTFQKDPKKI---EVTRPAQTAETISQFV--VKLPTNDGKARRTALRR 241
Query: 259 LLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRI 318
++ T ++F N ++ +++ +L A + G Q R +L F+ GK+++
Sbjct: 242 VIEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKL 301
Query: 319 LVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
LV +D+AARG+D +V V N P Y+HR+GR GR G G T+V+
Sbjct: 302 LVASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVT 353
Score = 57 (25.1 bits), Expect = 1.6e-41, Sum P(3) = 1.6e-41
Identities = 21/87 (24%), Positives = 34/87 (39%)
Query: 893 DRTKRRSRPRKNKENTDILNTLGQDKTSA----HGRTPSGGHRTPERRRSD-GVRNDTRD 947
DR++R R R+ KE+ D+ +T A P+ P+R R+ G + R
Sbjct: 421 DRSERAPRRRREKEDGDVAVADAPVETVATETVEAAEPAAVQEKPKRERAPRGEKRRERT 480
Query: 948 ERNGAYTGDKGGRNRGHSVNSRKDHSF 974
E +K R+ G R +
Sbjct: 481 EETPQPRAEKRERSGGDRERERPQRDY 507
Score = 51 (23.0 bits), Expect = 6.7e-41, Sum P(3) = 6.7e-41
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 893 DRTKRRSRPR--KNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSDGVRND 944
++ KR PR K +E T+ T + A R SGG R ER + D R D
Sbjct: 463 EKPKRERAPRGEKRRERTE--ET---PQPRAEKRERSGGDRERERPQRDYKRKD 511
Score = 48 (22.0 bits), Expect = 1.4e-40, Sum P(3) = 1.4e-40
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 1112 KISTERSNSNSAPREKSSDAKQAANEEENITGGNDENKTP 1151
K ER+ RE++ + Q E+ +GG+ E + P
Sbjct: 464 KPKRERAPRGEKRRERTEETPQPRAEKRERSGGDRERERP 503
Score = 43 (20.2 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 23/108 (21%), Positives = 41/108 (37%)
Query: 1850 GNSRCQPKTAYQSSSAQSEDGTSYKSISWDA-YSVIDEP-ESYDVSWRTCSSESAAREKN 1907
G + +T S +SE + D +V D P E+ + +A +EK
Sbjct: 406 GGRSARGRTERTEQSDRSERAPRRRREKEDGDVAVADAPVETVATETVEAAEPAAVQEKP 465
Query: 1908 SGQRSRGSGDKAARKSASLPASQIALRDGKGDFKSPRKASHSLKDGKR 1955
+R+ G+K ++ P + R+ G R+ +D KR
Sbjct: 466 KRERAP-RGEKRRERTEETPQPRAEKRERSG---GDRERERPQRDYKR 509
Score = 42 (19.8 bits), Expect = 7.7e-39, Sum P(2) = 7.7e-39
Identities = 20/111 (18%), Positives = 42/111 (37%)
Query: 465 LTDGQSEEESDSENDGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKI 524
+ +G EE + K D RG R + ++ + + + +R + +K
Sbjct: 375 MPEGLLEELETLPPEEKRDRKTGGRGGDRDRGGRSARGRTERTEQSDRSERAPRRRREKE 434
Query: 525 DGANSAEKSLEDKHGKKITNSFE--AVGEIVQNDTETT--KENNQTDEVPE 571
DG + + + + + E AV E + + K +T+E P+
Sbjct: 435 DGDVAVADAPVETVATETVEAAEPAAVQEKPKRERAPRGEKRRERTEETPQ 485
Score = 38 (18.4 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 2127 GHDPARGLPMRSHFHGVKRSNHCDRKPRGGRKRLESSGNE 2166
G D RG RS +R+ DR R R+R E +
Sbjct: 400 GGDRDRG--GRSARGRTERTEQSDRSERAPRRRREKEDGD 437
Score = 38 (18.4 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 17/93 (18%), Positives = 33/93 (35%)
Query: 980 RSKGGFDSYLDQSMDSFLDKSCREESFLKRSHMPKRDLVVYDDAFDMFSPAANNLDEYEI 1039
R GG D+ S ++ R E + P+R D + + +
Sbjct: 394 RKTGGRGGDRDRGGRSARGRTERTEQSDRSERAPRRRREKEDGDVAVADAPVETVATETV 453
Query: 1040 DYVEQPVDEKKSRRELSQKMDSDRYRPDSDGDP 1072
+ E ++K +RE + + + R R + P
Sbjct: 454 EAAEPAAVQEKPKRERAPRGEKRRERTEETPQP 486
Score = 37 (18.1 bits), Expect = 1.6e-41, Sum P(3) = 1.6e-41
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 797 DQSNSVRIGDNDGTGNRSITRSKQNSQS 824
D+ R GD D G + R+++ QS
Sbjct: 393 DRKTGGRGGDRDRGGRSARGRTERTEQS 420
>UNIPROTKB|B4DRZ7 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
UniGene:Hs.656037 HGNC:HGNC:25628 EMBL:AC012184 EMBL:AK299504
IPI:IPI01009735 SMR:B4DRZ7 STRING:B4DRZ7 Ensembl:ENST00000443119
UCSC:uc002eys.3 Uniprot:B4DRZ7
Length = 388
Score = 456 (165.6 bits), Expect = 1.6e-41, P = 1.6e-41
Identities = 128/397 (32%), Positives = 208/397 (52%)
Query: 27 LIEKP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKL 83
LI KP + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A L++
Sbjct: 6 LIRKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSR- 64
Query: 84 IKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-PVQIVV 142
++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++ QIV+
Sbjct: 65 VEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVI 124
Query: 143 GSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSA 200
G+PG + KLK+++ +++F++DEAD +I T G + I LP QML+ SA
Sbjct: 125 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSA 184
Query: 201 TYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL 260
T+ QK + DP +I+ + L +KQ L C + ++ + L L
Sbjct: 185 TFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL---CSSRDEKF----QALCNLY 237
Query: 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320
Q +IF + + + L+ LSG + R A ++ F+ GK ++LV
Sbjct: 238 GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 297
Query: 321 TTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVSAESL 374
TT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V ++
Sbjct: 298 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK-- 355
Query: 375 VKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
HS M +N + FN + + L D ++ +++
Sbjct: 356 ---HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 386
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 445 (161.7 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 133/451 (29%), Positives = 222/451 (49%)
Query: 25 DVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
D L + P+ + E G+ + + +Q P L G D + +++GTGK+ F + L +L
Sbjct: 4 DTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQL 63
Query: 84 IKLPVQQP--QTIILAPTREIAVQITDVVRSVGAHV--KNLHVDYFIGGTQVERPKRPVQ 139
P +P + +++ PTRE+A+Q+ ++ + K L V Y GG + ++ V+
Sbjct: 64 AAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAV-Y--GGANMNPQRKGVE 120
Query: 140 ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195
I+V +PGR+ +I L++ SV ++DEAD++++ GFV DI + + P+ Q
Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQT 180
Query: 196 LVVSATYSHDNLATLQKYMVD-PLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254
++ SATYS D + L M++ P + + T V+QLV + + + L
Sbjct: 181 MLFSATYS-DAVKQLSHKMLNQPQWVNVAENTTAST-VEQLVYRVDKRRKAEL------- 231
Query: 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
L +L+ + + Q ++F++ + E + + L A G + Q AR LD FK G
Sbjct: 232 -LSELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAG 290
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA--- 371
K+R+LV TD+AARG+D + LVINLE+P A Y+HR+GR GR G G I+ VS
Sbjct: 291 KLRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADD 350
Query: 372 ESLVKFHSLMGE---INLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVE 428
E L + +L+GE + + + G D T + + P D+ +
Sbjct: 351 EMLAEIEALIGEKLPVTVQPGYEEGTPLPARYRDLPVVTTKTKWSYKAPKDRTIGKSSAG 410
Query: 429 QTAEESSKVENTKPLR-GAPSKEVTKKGASK 458
+ ES P R G SK+ K S+
Sbjct: 411 GKSSESQARARKSPSREGKYSKDKAKVSPSQ 441
Score = 43 (20.2 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1898 SSESAAREKNSGQRS-RGSGDKAARKSASLP 1927
SSES AR + S R + S DKA + S S P
Sbjct: 413 SSESQARARKSPSREGKYSKDKA-KVSPSQP 442
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 445 (161.7 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 133/451 (29%), Positives = 222/451 (49%)
Query: 25 DVL-IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
D L + P+ + E G+ + + +Q P L G D + +++GTGK+ F + L +L
Sbjct: 4 DTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQL 63
Query: 84 IKLPVQQP--QTIILAPTREIAVQITDVVRSVGAHV--KNLHVDYFIGGTQVERPKRPVQ 139
P +P + +++ PTRE+A+Q+ ++ + K L V Y GG + ++ V+
Sbjct: 64 AAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAV-Y--GGANMNPQRKGVE 120
Query: 140 ----IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195
I+V +PGR+ +I L++ SV ++DEAD++++ GFV DI + + P+ Q
Sbjct: 121 QGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQT 180
Query: 196 LVVSATYSHDNLATLQKYMVD-PLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254
++ SATYS D + L M++ P + + T V+QLV + + + L
Sbjct: 181 MLFSATYS-DAVKQLSHKMLNQPQWVNVAENTTAST-VEQLVYRVDKRRKAEL------- 231
Query: 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
L +L+ + + Q ++F++ + E + + L A G + Q AR LD FK G
Sbjct: 232 -LSELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAG 290
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA--- 371
K+R+LV TD+AARG+D + LVINLE+P A Y+HR+GR GR G G I+ VS
Sbjct: 291 KLRVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADD 350
Query: 372 ESLVKFHSLMGE---INLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVE 428
E L + +L+GE + + + G D T + + P D+ +
Sbjct: 351 EMLAEIEALIGEKLPVTVQPGYEEGTPLPARYRDLPVVTTKTKWSYKAPKDRTIGKSSAG 410
Query: 429 QTAEESSKVENTKPLR-GAPSKEVTKKGASK 458
+ ES P R G SK+ K S+
Sbjct: 411 GKSSESQARARKSPSREGKYSKDKAKVSPSQ 441
Score = 43 (20.2 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1898 SSESAAREKNSGQRS-RGSGDKAARKSASLP 1927
SSES AR + S R + S DKA + S S P
Sbjct: 413 SSESQARARKSPSREGKYSKDKA-KVSPSQP 442
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 423 (154.0 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 100/354 (28%), Positives = 182/354 (51%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+++ + + + ++E G+ +PIQ A P L G D + +++GTGK+ F + + L
Sbjct: 5 SELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLL 64
Query: 84 IK--LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPK----RP 137
+ + P++++L PTRE+A Q+ + + H+K L IGG + R
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLK-LTKALLIGGVSFKEQDALIDRG 123
Query: 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
V +++ +PGR+ + L + V++ ++DEAD++++ GF+ DI I+S P +Q L
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLF 183
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV 257
SAT + + ++ P I ++Q V L + R E++ ++
Sbjct: 184 FSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRD--REASEKRAVL 241
Query: 258 QLLSQTPFNQC---VIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
+ L +C +IF N + +++ ++L + A + G DQ R +LD F+ G
Sbjct: 242 RALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREG 301
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITI 368
K+R+LV +D+AARG+D +V V N ++P Y+HR+GR GR G G IT+
Sbjct: 302 KLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITL 355
Score = 50 (22.7 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 18/72 (25%), Positives = 29/72 (40%)
Query: 885 QSDSKPYGDRTKRRSRP-RKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSDGVRN 943
+++ KP + +R +P R +K + K A R P +R R G R
Sbjct: 383 RTEEKPEA-KPRREEKPARADKPARSDADKREPVKREADKRDPVK-READKRDRKGGERR 440
Query: 944 DTRDERNGAYTG 955
D +D+R G
Sbjct: 441 DRKDDRGARVVG 452
Score = 41 (19.5 bits), Expect = 2.0e-41, Sum P(3) = 2.0e-41
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 545 SFEAVGEIVQNDTETTKENNQTDEVPE 571
+ +A+ +++Q D + +T+E PE
Sbjct: 363 ALDAIEKLIQKDIPRLENPARTEEKPE 389
Score = 40 (19.1 bits), Expect = 2.2e-40, Sum P(3) = 2.2e-40
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 1047 DEKKSRRELSQKMDSDRYRPDSDGDPNRRPSSQES 1081
+EK +R + + D+D+ P R P +E+
Sbjct: 395 EEKPARADKPARSDADKREPVKREADKRDPVKREA 429
Score = 39 (18.8 bits), Expect = 9.7e-39, Sum P(2) = 9.7e-39
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 1446 DDDGLDESYNMIKTPTPRKRNGASGESSVE 1475
D+ LD +I+ PR N A E E
Sbjct: 360 DEKALDAIEKLIQKDIPRLENPARTEEKPE 389
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 417 (151.9 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
Identities = 112/366 (30%), Positives = 187/366 (51%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ +P+ Q G++K S IQ AA P+ L G D I +++G+GK+ F + L L+ P
Sbjct: 51 VSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP 110
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KRPVQIVV 142
Q ++L PTRE+A QI ++G+ + L +GG + +RP I+V
Sbjct: 111 -QAFFCLVLTPTRELAFQIGQQFEALGSGI-GLIAAVIVGGVDMAAQAMALARRP-HIIV 167
Query: 143 GSPGRIKQMIK-LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201
+PGR+ ++ K N+ +++ IMDEAD+++N F ++ I +P ++ + SAT
Sbjct: 168 ATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSAT 227
Query: 202 YSHDNLATLQKYMV-DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL 260
+ ++ L++ + DP + + + +KQ +P +Y +E LV LL
Sbjct: 228 MTK-KVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPN------KY--KETYLVYLL 278
Query: 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320
++ N ++F I L A L G Q+ RL SL+ FK ILV
Sbjct: 279 NEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338
Query: 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380
TD+AARG+D +VD+VIN ++P + Y+HR+GR R G G+ IT+V+ + + +
Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKI 398
Query: 381 MGEINL 386
E NL
Sbjct: 399 --EANL 402
Score = 69 (29.3 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
Identities = 19/87 (21%), Positives = 35/87 (40%)
Query: 1678 RIGSNKRTGFQLTSLQVDRHTQMDQYFR---NGGPMMKQYLCSTQGLQRFKXXXXXXXXQ 1734
R+G R G ++ V ++ Y + N G + +Y C +
Sbjct: 370 RVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLDEYKCVENEVMVLVERTQEATEN 429
Query: 1735 SEFDPKRLHSKESSHKRNRKANDFNDT 1761
+ + K + K+ S K+ R+ +DF DT
Sbjct: 430 ARIEMKEMDEKKKSGKKRRQNDDFGDT 456
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 453 (164.5 bits), Expect = 3.4e-41, P = 3.4e-41
Identities = 126/432 (29%), Positives = 218/432 (50%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ-- 89
I + + + G+ K +PIQ A P + G D + +++GTGK+ F + L K+++ P +
Sbjct: 12 ILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETL 71
Query: 90 --QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG----TQVERPKRPVQIVVG 143
+ +IL PTRE+A Q+ + V + ++ N V GG TQ ++ KR I+V
Sbjct: 72 KSNTRVLILTPTRELAAQVAENVEAYSKYL-NFSVLTIYGGVKVETQAQKLKRGADIIVA 130
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
+PGR+ + + L++ SV ++DEAD++++ GF DI I + +Q L+ SAT+S
Sbjct: 131 TPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATFS 190
Query: 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT 263
+ M+ P +I + V Q+V + + + L L +L+ +
Sbjct: 191 SAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKREL--------LSELIGKK 242
Query: 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323
+ Q ++F+ + + + + L +E + G + Q +R +L F GKVR+LV T+
Sbjct: 243 NWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATE 302
Query: 324 LAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE---SLVKFHSL 380
+AARG+D +++ V+N ++P A Y+HR+GR GR G G+ I+ VS E +L L
Sbjct: 303 VAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEKL 362
Query: 381 MGEINLDHAFNVGLVPDNLTGDQINWTQRVQTL--LAKPLDQAQEREDVEQTAEESSKVE 438
+G+ VP G + +++QT AK Q Q+ + AE+S +
Sbjct: 363 IGQ-----KIRRITVPGYEVGSRDLLLKQLQTRRSFAKK-QQRQDNVSEQMIAEKSMQGR 416
Query: 439 NTKPLRG-APSK 449
K G APSK
Sbjct: 417 RVKMKVGQAPSK 428
>MGI|MGI:99526 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0006917 "induction of apoptosis"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:99526
GO:GO:0005524 GO:GO:0005737 GO:GO:0015031 GO:GO:0031965
GO:GO:0005643 GO:GO:0003723 EMBL:CH466525 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:L25125 EMBL:AK049467
EMBL:AK146548 EMBL:BC011270 IPI:IPI00123651 PIR:I49731
RefSeq:NP_031942.2 UniGene:Mm.287901 ProteinModelPortal:Q61655
SMR:Q61655 IntAct:Q61655 PhosphoSite:Q61655
REPRODUCTION-2DPAGE:Q61655 PaxDb:Q61655 PRIDE:Q61655
Ensembl:ENSMUST00000040416 GeneID:13680 KEGG:mmu:13680
InParanoid:Q543M2 ChiTaRS:DDX19A NextBio:284434 Bgee:Q61655
CleanEx:MM_DDX19A Genevestigator:Q61655
GermOnline:ENSMUSG00000015023 Uniprot:Q61655
Length = 478
Score = 453 (164.5 bits), Expect = 3.4e-41, P = 3.4e-41
Identities = 127/401 (31%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 93 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-PV 138
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++
Sbjct: 152 LSR-VEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKVSE 210
Query: 139 QIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 211 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 270
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C N ++ + L
Sbjct: 271 LFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVL---CNNREEKF----QAL 323
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 444 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 476
>RGD|1303136 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010043
"response to zinc ion" evidence=IEP] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524 GO:GO:0006917
GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 453 (164.5 bits), Expect = 3.4e-41, P = 3.4e-41
Identities = 127/401 (31%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 93 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP-V 138
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++
Sbjct: 152 LSR-VEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKVGE 210
Query: 139 QIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 211 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 270
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C N ++ + L
Sbjct: 271 LFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVL---CNNREEKF----QAL 323
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 444 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 476
>RGD|1593382 [details] [associations]
symbol:Ddx19b "DEAD (Asp-Glu-Ala-As) box polypeptide 19B"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524
GO:GO:0006917 GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 453 (164.5 bits), Expect = 3.4e-41, P = 3.4e-41
Identities = 127/401 (31%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 93 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP-V 138
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++
Sbjct: 152 LSR-VEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKVGE 210
Query: 139 QIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 211 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 270
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C N ++ + L
Sbjct: 271 LFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVL---CNNREEKF----QAL 323
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 444 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 476
>UNIPROTKB|E9PTL9 [details] [associations]
symbol:Ddx19b "Protein Ddx19b" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1593382 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00959699
Ensembl:ENSRNOT00000059034 ArrayExpress:E9PTL9 Uniprot:E9PTL9
Length = 482
Score = 453 (164.5 bits), Expect = 3.4e-41, P = 3.4e-41
Identities = 127/401 (31%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 97 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 155
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP-V 138
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++
Sbjct: 156 LSR-VEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKVGE 214
Query: 139 QIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 215 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 274
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C N ++ + L
Sbjct: 275 LFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVL---CNNREEKF----QAL 327
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 328 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 387
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 388 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 447
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 448 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 480
>UNIPROTKB|E2RR50 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
EMBL:AAEX03004077 RefSeq:XP_536790.2 ProteinModelPortal:E2RR50
Ensembl:ENSCAFT00000032061 GeneID:479658 KEGG:cfa:479658
NextBio:20854805 Uniprot:E2RR50
Length = 478
Score = 450 (163.5 bits), Expect = 7.1e-41, P = 7.1e-41
Identities = 126/401 (31%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 93 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++ +
Sbjct: 152 LSR-VEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKISE 210
Query: 140 -IVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
IV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 211 HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKNCQML 270
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C N ++ + L
Sbjct: 271 LFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVL---CNNRDEKF----QAL 323
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 444 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 476
>UNIPROTKB|Q9NUU7 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0010043
"response to zinc ion" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0031965
"nuclear membrane" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0003723 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA CTD:55308
HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:AK001988 EMBL:AK223262
EMBL:AL832970 EMBL:CH471241 EMBL:BC005162 EMBL:BC006544
EMBL:BC137496 EMBL:BC137497 IPI:IPI00019918 RefSeq:NP_060802.1
UniGene:Hs.656037 ProteinModelPortal:Q9NUU7 SMR:Q9NUU7
IntAct:Q9NUU7 MINT:MINT-1450935 STRING:Q9NUU7 PhosphoSite:Q9NUU7
DMDM:73919226 PaxDb:Q9NUU7 PeptideAtlas:Q9NUU7 PRIDE:Q9NUU7
DNASU:55308 Ensembl:ENST00000302243 GeneID:55308 KEGG:hsa:55308
UCSC:uc002eyv.3 GeneCards:GC16P070380 H-InvDB:HIX0038837
HGNC:HGNC:25628 HPA:HPA045252 neXtProt:NX_Q9NUU7
PharmGKB:PA134894996 InParanoid:Q9NUU7 PhylomeDB:Q9NUU7
GenomeRNAi:55308 NextBio:59538 ArrayExpress:Q9NUU7 Bgee:Q9NUU7
CleanEx:HS_DDX19A Genevestigator:Q9NUU7 GermOnline:ENSG00000168872
Uniprot:Q9NUU7
Length = 478
Score = 449 (163.1 bits), Expect = 9.0e-41, P = 9.0e-41
Identities = 126/401 (31%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 93 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-PV 138
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++
Sbjct: 152 LSR-VEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE 210
Query: 139 QIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 211 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 270
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C + ++ + L
Sbjct: 271 LFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL---CSSRDEKF----QAL 323
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 444 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 476
>UNIPROTKB|F1S432 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:HETIFEV
EMBL:CU929739 Ensembl:ENSSSCT00000003016 Uniprot:F1S432
Length = 481
Score = 449 (163.1 bits), Expect = 9.0e-41, P = 9.0e-41
Identities = 126/401 (31%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 96 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 154
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++ +
Sbjct: 155 LSQ-VEPANRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE 213
Query: 140 -IVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
IV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 214 HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 273
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C N ++ + L
Sbjct: 274 LFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVL---CNNRDEKF----QAL 326
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 327 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKE 386
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 387 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 446
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 447 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 479
>UNIPROTKB|I3LC00 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236
EMBL:CU929739 RefSeq:XP_003126917.1 Ensembl:ENSSSCT00000029799
GeneID:100524144 KEGG:ssc:100524144 Uniprot:I3LC00
Length = 478
Score = 449 (163.1 bits), Expect = 9.0e-41, P = 9.0e-41
Identities = 126/401 (31%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 93 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++ +
Sbjct: 152 LSR-VEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKISE 210
Query: 140 -IVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
IV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 211 HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 270
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C N ++ + L
Sbjct: 271 LFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVL---CNNRDEKF----QAL 323
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKE 383
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 444 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 476
>UNIPROTKB|H3BQK0 [details] [associations]
symbol:DDX19B "HCG1998531, isoform CRA_g" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:CH471241 EMBL:AC012184 HGNC:HGNC:2742
ChiTaRS:DDX19B SMR:H3BQK0 Ensembl:ENST00000563206 Uniprot:H3BQK0
Length = 484
Score = 448 (162.8 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 126/401 (31%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 99 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 157
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-PV 138
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++
Sbjct: 158 LSQ-VEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE 216
Query: 139 QIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 217 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 276
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C + ++ + L
Sbjct: 277 LFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL---CSSRDEKF----QAL 329
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 330 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 389
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 390 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 449
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 450 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 482
>UNIPROTKB|Q9UMR2 [details] [associations]
symbol:DDX19B "ATP-dependent RNA helicase DDX19B"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0003723 GO:GO:0004386
GO:GO:0006406 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
OrthoDB:EOG46MBJK EMBL:CH471241 EMBL:AJ237946 EMBL:AF353720
EMBL:AL136639 EMBL:CR457215 EMBL:CR533509 EMBL:AK027378
EMBL:AK301938 EMBL:AK302107 EMBL:AK316346 EMBL:AC012184
EMBL:BC003626 EMBL:BC010008 IPI:IPI00008943 IPI:IPI00027599
IPI:IPI00556368 IPI:IPI00939593 RefSeq:NP_001014449.1
RefSeq:NP_001014451.1 RefSeq:NP_001244101.1 RefSeq:NP_001244102.1
RefSeq:NP_001244103.1 RefSeq:NP_009173.1 UniGene:Hs.221761 PDB:3EWS
PDB:3FHC PDB:3FHT PDB:3FMO PDB:3FMP PDB:3G0H PDBsum:3EWS
PDBsum:3FHC PDBsum:3FHT PDBsum:3FMO PDBsum:3FMP PDBsum:3G0H
ProteinModelPortal:Q9UMR2 SMR:Q9UMR2 DIP:DIP-48486N IntAct:Q9UMR2
MINT:MINT-1387516 STRING:Q9UMR2 PhosphoSite:Q9UMR2 DMDM:10719979
PaxDb:Q9UMR2 PRIDE:Q9UMR2 DNASU:11269 Ensembl:ENST00000288071
Ensembl:ENST00000355992 Ensembl:ENST00000393657
Ensembl:ENST00000451014 Ensembl:ENST00000563392
Ensembl:ENST00000568625 GeneID:11269 KEGG:hsa:11269 UCSC:uc002eyo.3
UCSC:uc002eyp.3 CTD:11269 GeneCards:GC16P070328 HGNC:HGNC:2742
HPA:CAB037284 MIM:605812 neXtProt:NX_Q9UMR2 PharmGKB:PA27208
InParanoid:Q9UMR2 OMA:HETIFEV PhylomeDB:Q9UMR2 ChiTaRS:DDX19B
EvolutionaryTrace:Q9UMR2 GenomeRNAi:11269 NextBio:42879
ArrayExpress:Q9UMR2 Bgee:Q9UMR2 CleanEx:HS_DDX19B
Genevestigator:Q9UMR2 GermOnline:ENSG00000157349 Uniprot:Q9UMR2
Length = 479
Score = 448 (162.8 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 126/401 (31%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 94 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-PV 138
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++
Sbjct: 153 LSQ-VEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE 211
Query: 139 QIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 212 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 271
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C + ++ + L
Sbjct: 272 LFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL---CSSRDEKF----QAL 324
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 384
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 445 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 477
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 430 (156.4 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 110/365 (30%), Positives = 194/365 (53%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI-KLPV-- 88
I + + E G+ + +PIQ A P VL G D + +++GTGK+ F + L LI + P
Sbjct: 12 ILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK 71
Query: 89 -QQP-QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVV 142
++P + +IL PTRE+A QI + VR ++ N+ GG Q+ + + V ++V
Sbjct: 72 GRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLV 130
Query: 143 GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202
+PGR+ + + +D V + ++DEAD++++ GF+ DI + ++LP +Q L+ SAT+
Sbjct: 131 ATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATF 190
Query: 203 SHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK---LVQL 259
S D A +K + +PL I + R Q+ + +VD+++K L +
Sbjct: 191 SDDIKALAEKLLHNPLEI---EVARRNTASDQVTQHV--------HFVDKKRKRELLSHM 239
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
+ + + Q ++F+ + + E L + + G + Q AR +L FK G +R+L
Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHS 379
V TD+AARG+D + V+N E+P+ Y+HR+GR GR G +++V + H
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDE----HK 355
Query: 380 LMGEI 384
L+ +I
Sbjct: 356 LLRDI 360
Score = 50 (22.7 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 887 DSKPYGDRTKRRSRPRK 903
D+KP G++ +RR RPRK
Sbjct: 434 DAKPAGEQQRRR-RPRK 449
Score = 41 (19.5 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 506 GAGEDENGDRKASKDEQKIDGANSAEKSLEDKHGKKITNSFEAVGE 551
G G + G R + + GA SA +K +++ ++ A GE
Sbjct: 396 GGGRGQGGGRGQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPA-GE 440
Score = 40 (19.1 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 929 GHRTPERRRSDGVRNDTRDERNGAYTGDKGGRNR 962
G+ +++ ++N R +R G G GGR +
Sbjct: 375 GYEPDPSIKAEPIQNG-RQQRGGGGRGQGGGRGQ 407
Score = 39 (18.8 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 915 GQDKTSAHGRTPSGGHRTPERRRSDG 940
G+ + GR GG + RR +G
Sbjct: 390 GRQQRGGGGRGQGGGRGQQQPRRGEG 415
Score = 37 (18.1 bits), Expect = 2.9e-39, Sum P(2) = 2.9e-39
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 1677 GRIGSNKRTGFQLTSLQVDRH 1697
GR G TG L+ + VD H
Sbjct: 334 GRTGRAAATGEALSLVCVDEH 354
>TAIR|locus:2148027 [details] [associations]
symbol:UAP56b "homolog of human UAP56 b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GO:GO:0005618 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:At.49007 UniGene:At.73904 GeneID:830990 KEGG:ath:AT5G11200
OMA:LECVINY IPI:IPI00938969 RefSeq:NP_001154706.1
ProteinModelPortal:F4JWF6 SMR:F4JWF6 PRIDE:F4JWF6
EnsemblPlants:AT5G11200.2 Uniprot:F4JWF6
Length = 486
Score = 261 (96.9 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 63/198 (31%), Positives = 108/198 (54%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + ++GF S +Q P + G D I Q+KSG GK+ VFV++ L ++
Sbjct: 50 DFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIE 109
Query: 85 KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----- 139
P Q ++L TRE+A QI + ++ + V F GG ++ K ++
Sbjct: 110 PSP-GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPH 168
Query: 140 IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVV 198
IVVG+PGR+ + + K L++ +VR FI+DE DK++ + D+ I+ P KQ+++
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
Query: 199 SATYSHDNLATLQKYMVD 216
SAT S + +K+M D
Sbjct: 229 SATLSKEIRPVCKKFMQD 246
Score = 260 (96.6 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 57/127 (44%), Positives = 75/127 (59%)
Query: 247 LRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLA 306
L +++ +KL LL FNQ VIF R + + L NF + + Q+ RL
Sbjct: 329 LSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLT 388
Query: 307 SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVI 366
SFK G RILV TDL RGID V++VIN ++P A TYLHR+GRAGR+GT+GL I
Sbjct: 389 RYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 448
Query: 367 TIVSAES 373
T V++ S
Sbjct: 449 TFVASAS 455
Score = 37 (18.1 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 1745 KESSHKRNRKANDFND 1760
K S ++NRK ND D
Sbjct: 328 KLSEMEKNRKLNDLLD 343
>UNIPROTKB|Q5ZMC1 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K01529 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA
GeneTree:ENSGT00530000063236 HOVERGEN:HBG107989 CTD:11269
EMBL:AADN02040672 UniGene:Gga.7753 EMBL:AJ719463 IPI:IPI00571485
RefSeq:NP_001006568.1 SMR:Q5ZMC1 Ensembl:ENSGALT00000039619
GeneID:426504 KEGG:gga:426504 InParanoid:Q5ZMC1 NextBio:20828056
Uniprot:Q5ZMC1
Length = 479
Score = 443 (161.0 bits), Expect = 3.9e-40, P = 3.9e-40
Identities = 117/355 (32%), Positives = 189/355 (53%)
Query: 30 KP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKL 86
KP + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A L++ ++
Sbjct: 100 KPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSR-VEP 158
Query: 87 PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-PVQIVVGSP 145
+ PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++ QIV+G+P
Sbjct: 159 GNKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTP 218
Query: 146 GRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYS 203
G + KLK+++ +++F++DEAD +I T G + I LP QML+ SAT+
Sbjct: 219 GTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRDCQMLLFSATFE 278
Query: 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT 263
QK + DP +I+ + L +KQ L C + ++ + L +
Sbjct: 279 DSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVL---CNSRDEKF----RALCNIYGAI 331
Query: 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323
Q ++F + + + L+ LSG + R A ++ F+ GK ++LVTT+
Sbjct: 332 TIAQAMVFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 391
Query: 324 LAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVSAE 372
+ ARGID V +VIN ++P D TYLHR+GR GR+G RGL I +V ++
Sbjct: 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSK 446
>UNIPROTKB|F1MUT6 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 EMBL:DAAA02045970
IPI:IPI00704706 UniGene:Bt.37736 Ensembl:ENSBTAT00000004644
OMA:KMSMNIL Uniprot:F1MUT6
Length = 484
Score = 443 (161.0 bits), Expect = 3.9e-40, P = 3.9e-40
Identities = 124/401 (30%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 99 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 157
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++ +
Sbjct: 158 LSQ-VEPANRHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE 216
Query: 140 -IVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
IV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 217 HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 276
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C + ++ + L
Sbjct: 277 LFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVL---CNSRDEKF----QAL 329
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 330 CNIYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKE 389
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 390 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 449
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 450 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 482
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 443 (161.0 bits), Expect = 3.9e-40, P = 3.9e-40
Identities = 112/367 (30%), Positives = 189/367 (51%)
Query: 40 GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV---QQPQTIIL 96
G+ + +P+Q AA P L D + +++GTGK+ FV+ AL +L P + P+ ++L
Sbjct: 20 GYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLSSPPQGPGRGPRVLVL 79
Query: 97 APTREIAVQITDVVRSVGAHVKNLHVDYFIGG----TQVERPKRPVQIVVGSPGRIKQMI 152
PTRE+A Q+TD VR+ GA ++ + +GG Q+ PV +V +PGR+ ++
Sbjct: 80 TPTRELAQQVTDAVRTYGAFMR-VRSGAILGGMPYHAQLRLLSAPVDFIVATPGRLVDLL 138
Query: 153 KLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQK 212
+ L++ + L ++DEAD++++ GF +D+ I + P +Q L+ +AT +A L
Sbjct: 139 DRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTATMD-SAMARL-- 195
Query: 213 YMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFS 272
LL PE + G K I + + + + + L L++ + +IFS
Sbjct: 196 --AGRLLREPERID--IAGTKTTHEHIEQRLHVADDLHHKNRLLRHLITDESLRRAIIFS 251
Query: 273 NYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332
+ E + L A L G Q AR ++ + K+G++R+LV TD+AARG+D
Sbjct: 252 ATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAARGLDVT 311
Query: 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES---LVKFHSLMGEINLDHA 389
+ VIN ++P A Y+HR+GR GR G G+ I+ S L + +G+ +H
Sbjct: 312 GISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARIERYIGQTLPEHH 371
Query: 390 FNVGLVP 396
GL P
Sbjct: 372 IP-GLEP 377
>UNIPROTKB|Q3ZBV2 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9913 "Bos taurus" [GO:0031965 "nuclear membrane"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005643
"nuclear pore" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0015031 GO:GO:0031965 GO:GO:0005643
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 EMBL:BC103093 IPI:IPI00788586
RefSeq:NP_001029743.1 UniGene:Bt.49612 HSSP:Q9UHL0
ProteinModelPortal:Q3ZBV2 SMR:Q3ZBV2 PRIDE:Q3ZBV2
Ensembl:ENSBTAT00000004645 GeneID:529929 KEGG:bta:529929 CTD:55308
HOVERGEN:HBG107989 InParanoid:Q3ZBV2 OMA:MMAINTI OrthoDB:EOG46MBJK
NextBio:20875139 ArrayExpress:Q3ZBV2 Uniprot:Q3ZBV2
Length = 478
Score = 442 (160.7 bits), Expect = 5.0e-40, P = 5.0e-40
Identities = 124/401 (30%), Positives = 210/401 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 93 FE-ELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ 139
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++ +
Sbjct: 152 LSR-VEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKISE 210
Query: 140 -IVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
IV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 211 HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 270
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ QK + DP +I+ + L +KQ L C + ++ + L
Sbjct: 271 LFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVL---CNSRDEKF----QAL 323
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 324 CNIYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKE 383
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443
Query: 371 AESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 444 SK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 476
>RGD|68381 [details] [associations]
symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) box helicase 25"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA;ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
process" evidence=ISO;IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO;ISS] [GO:0006417 "regulation of translation"
evidence=IEA;ISO;ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA;ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0033391 "chromatoid body" evidence=IEA;ISO;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:68381
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 CTD:29118 OrthoDB:EOG4NS3BD
EMBL:AF142629 IPI:IPI00213497 IPI:IPI00760145 IPI:IPI00760150
RefSeq:NP_113818.2 UniGene:Rn.224821 ProteinModelPortal:Q9QY16
SMR:Q9QY16 STRING:Q9QY16 PRIDE:Q9QY16 GeneID:58856 KEGG:rno:58856
UCSC:RGD:68381 InParanoid:Q9QY16 NextBio:611449 ArrayExpress:Q9QY16
Genevestigator:Q9QY16 GermOnline:ENSRNOG00000012260 Uniprot:Q9QY16
Length = 483
Score = 442 (160.7 bits), Expect = 5.0e-40, P = 5.0e-40
Identities = 116/375 (30%), Positives = 192/375 (51%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ +++ + +G+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 99 FE-ELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAM 157
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV- 138
LN++ L + PQ + LAPT E+A+Q VV +G ++ V Y I G ++ R
Sbjct: 158 LNRVNALELF-PQCLCLAPTYELALQTGRVVERMGKFCVDVEVMYAIRGNRIPRGTDVTK 216
Query: 139 QIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + K K +++ +R+F++DEAD +I+T GF + I LP QML
Sbjct: 217 QIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQML 276
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ ++ + DP +I+ L ++Q L C+N +Y + L
Sbjct: 277 LFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVL---CENRKDKY----QAL 329
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + + LSG + R + + F+ GK
Sbjct: 330 CNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKE 389
Query: 317 RILVTTDLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGTRGLVITIVS 370
++L+TT++ ARGID V +V+N ++P D TYLHR+GR GR+G +GL ++
Sbjct: 390 KVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMIE 449
Query: 371 AESLVKFHSLMGEIN 385
+ L + N
Sbjct: 450 VDKLPLLMKIQDHFN 464
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 440 (159.9 bits), Expect = 8.2e-40, P = 8.2e-40
Identities = 108/414 (26%), Positives = 216/414 (52%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
++ + + + E+ + + + IQ + P +L +D + ++++GTGK+ F + L +LI +
Sbjct: 12 LDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQ 71
Query: 88 VQQPQ--TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIV 141
+P+ ++L PTRE+A Q+ G ++ + GG Q+ K V I+
Sbjct: 72 PCKPELRALVLTPTRELAQQVHKSFCHYGQFT-DVTIGIAYGGVSTKKQISELKVGVDIL 130
Query: 142 VGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201
+ +PGR+ +++ + +++ ++ + DEAD++++ GF E+I I LP KQ L+ SAT
Sbjct: 131 IATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSAT 190
Query: 202 YSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ-LL 260
++ D + +V+P ++ ++ + V+QLV + D +++L L+
Sbjct: 191 FADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVD---------ADRKRELTSFLI 241
Query: 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320
+ Q ++F+ + + + + + + + G + Q AR +L FK GKVR L+
Sbjct: 242 GSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALI 301
Query: 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380
TD+AARGID + VIN E+P++A Y+HR+GR R G GL +++VS L
Sbjct: 302 ATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGE----EWL 357
Query: 381 MGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEES 434
+ I + ++ L+ L G +++ T ++ +P+++ R+D ++S
Sbjct: 358 LTAI--EELLDIQLLQQWLPGYELDLT-KIANSNKRPINKKNARKDALSAGDKS 408
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 440 (159.9 bits), Expect = 8.2e-40, P = 8.2e-40
Identities = 108/414 (26%), Positives = 216/414 (52%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
++ + + + E+ + + + IQ + P +L +D + ++++GTGK+ F + L +LI +
Sbjct: 12 LDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQ 71
Query: 88 VQQPQ--TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIV 141
+P+ ++L PTRE+A Q+ G ++ + GG Q+ K V I+
Sbjct: 72 PCKPELRALVLTPTRELAQQVHKSFCHYGQFT-DVTIGIAYGGVSTKKQISELKVGVDIL 130
Query: 142 VGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201
+ +PGR+ +++ + +++ ++ + DEAD++++ GF E+I I LP KQ L+ SAT
Sbjct: 131 IATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSAT 190
Query: 202 YSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ-LL 260
++ D + +V+P ++ ++ + V+QLV + D +++L L+
Sbjct: 191 FADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVD---------ADRKRELTSFLI 241
Query: 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILV 320
+ Q ++F+ + + + + + + + G + Q AR +L FK GKVR L+
Sbjct: 242 GSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALI 301
Query: 321 TTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSL 380
TD+AARGID + VIN E+P++A Y+HR+GR R G GL +++VS L
Sbjct: 302 ATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGE----EWL 357
Query: 381 MGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEES 434
+ I + ++ L+ L G +++ T ++ +P+++ R+D ++S
Sbjct: 358 LTAI--EELLDIQLLQQWLPGYELDLT-KIANSNKRPINKKNARKDALSAGDKS 408
>UNIPROTKB|Q9UHL0 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007286 "spermatid development" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006406 "mRNA export from
nucleus" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0033391 "chromatoid body" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 EMBL:CH471065
GO:GO:0007286 GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 CTD:29118 OrthoDB:EOG4NS3BD
EMBL:AF155140 EMBL:AY735312 EMBL:AY735301 EMBL:AY735302
EMBL:AY735303 EMBL:AY735304 EMBL:AY735305 EMBL:AY735306
EMBL:AY735307 EMBL:AY735308 EMBL:AY735309 EMBL:AY735310
EMBL:AY735311 EMBL:AK312772 EMBL:BC035388 EMBL:BC050360
IPI:IPI00296139 IPI:IPI00759454 RefSeq:NP_037396.3
UniGene:Hs.420263 PDB:2RB4 PDBsum:2RB4 ProteinModelPortal:Q9UHL0
SMR:Q9UHL0 STRING:Q9UHL0 PhosphoSite:Q9UHL0 DMDM:61222937
PaxDb:Q9UHL0 PRIDE:Q9UHL0 Ensembl:ENST00000263576 GeneID:29118
KEGG:hsa:29118 UCSC:uc001qcz.4 GeneCards:GC11P125773
HGNC:HGNC:18698 HPA:HPA020090 HPA:HPA020137 MIM:607663
neXtProt:NX_Q9UHL0 PharmGKB:PA38644 InParanoid:Q9UHL0 OMA:WHFAERI
PhylomeDB:Q9UHL0 ChiTaRS:DDX25 EvolutionaryTrace:Q9UHL0
GenomeRNAi:29118 NextBio:52207 ArrayExpress:Q9UHL0 Bgee:Q9UHL0
CleanEx:HS_DDX25 Genevestigator:Q9UHL0 GermOnline:ENSG00000109832
Uniprot:Q9UHL0
Length = 483
Score = 439 (159.6 bits), Expect = 1.0e-39, P = 1.0e-39
Identities = 114/375 (30%), Positives = 193/375 (51%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ +++ + +G+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 99 FE-ELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAM 157
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV- 138
L+++ L + PQ + LAPT E+A+Q VV +G ++ V Y I G ++ R
Sbjct: 158 LSRVNALELF-PQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK 216
Query: 139 QIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QI++G+PG + KLK +++ +R+F++DEAD +I+T GF + I LP QML
Sbjct: 217 QIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQML 276
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ ++ + DP +I+ L ++Q L C++ +Y + L
Sbjct: 277 LFSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVL---CEHRKDKY----QAL 329
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + + LSG + R + + F+ GK
Sbjct: 330 CNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE 389
Query: 317 RILVTTDLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGTRGLVITIVS 370
++L+TT++ ARGID V +V+N ++P D TYLHR+GR GR+G +GL ++
Sbjct: 390 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIE 449
Query: 371 AESLVKFHSLMGEIN 385
+ L + N
Sbjct: 450 VDELPSLMKIQDHFN 464
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 458 (166.3 bits), Expect = 1.3e-39, P = 1.3e-39
Identities = 147/535 (27%), Positives = 254/535 (47%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
N + + +P+ +GL G+VK SPIQ A P L G D I + +G+GK+ F++ + +L
Sbjct: 234 NSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERL 293
Query: 84 IKLPVQQPQT--IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-- 139
+ P + T I+L PTRE+A+Q+ DV + + V + +GG + + ++ ++
Sbjct: 294 LYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSR 353
Query: 140 --IVVGSPGRIKQMIKLKY-LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQML 196
IV+ +PGR I+ N+DSV + +MDEAD+++ GF +++ I LP +Q L
Sbjct: 354 PDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNL 413
Query: 197 VVSATYSHD--NLATLQ-KYMVDPLLIRPEDATRPLLGVKQLVALIP-ECKNPSLRYVDE 252
+ SAT + +L +L K V ++ P+ A L ++ V + + P+L +
Sbjct: 414 LFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKL--TQEFVRIRKRDHLKPALLF--- 468
Query: 253 EKKLVQLLSQTPFNQCVIF-----SNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307
L++ L T + V+F + ++LR I L + G L G+ Q+ RL S
Sbjct: 469 --NLIRKLDPTGQKRIVVFVARKETAHRLR---IIMGLLGMSVGE--LHGSLTQEQRLDS 521
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
++ FK +V +L+ TDLA+RG+D +++VIN ++P YLHR+GR R G G +T
Sbjct: 522 VNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVT 581
Query: 368 IVSAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQT-LLAKPLDQAQERED 426
V S + S++ N L G ++W Q +T L + ++ E
Sbjct: 582 FVGESS--QDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDIL 639
Query: 427 VEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDENG 486
VE+ E+ + +G + K+ ++ W + ESD +N
Sbjct: 640 VEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTW------FQSESDKKNSKVLGALS 693
Query: 487 SQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANSAEKSLEDKHGKK 541
+ SK+ K +E K G RK +K ++ D + +K KK
Sbjct: 694 RNKKVTNSKKRKREE--AKADGNGARSYRK-TKTDRIADQERTFKKQKSTNSNKK 745
>MGI|MGI:1353582 [details] [associations]
symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 25"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006200 "ATP catabolic process"
evidence=ISO;IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006810 "transport" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IDA]
[GO:0051028 "mRNA transport" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1353582 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 GO:GO:0007286
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 HOVERGEN:HBG107989 CTD:29118
OrthoDB:EOG4NS3BD OMA:WHFAERI ChiTaRS:DDX25 EMBL:AF142630
EMBL:AY380091 EMBL:AY380080 EMBL:AY380081 EMBL:AY380082
EMBL:AY380083 EMBL:AY380084 EMBL:AY380085 EMBL:AY380086
EMBL:AY380087 EMBL:AY380088 EMBL:AY380089 EMBL:AY380090
EMBL:AK050693 EMBL:AK078340 EMBL:BC024852 EMBL:BC061130
IPI:IPI00135420 IPI:IPI00759935 RefSeq:NP_038960.2
UniGene:Mm.291723 ProteinModelPortal:Q9QY15 SMR:Q9QY15
STRING:Q9QY15 PhosphoSite:Q9QY15 PaxDb:Q9QY15 PRIDE:Q9QY15
Ensembl:ENSMUST00000034612 GeneID:30959 KEGG:mmu:30959
UCSC:uc012gqi.1 InParanoid:Q9QY15 NextBio:307448 Bgee:Q9QY15
CleanEx:MM_DDX25 Genevestigator:Q9QY15
GermOnline:ENSMUSG00000032101 Uniprot:Q9QY15
Length = 484
Score = 438 (159.2 bits), Expect = 1.3e-39, P = 1.3e-39
Identities = 114/375 (30%), Positives = 192/375 (51%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ +++ + +G+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 100 FE-ELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAM 158
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV- 138
L+++ L + PQ + LAPT E+A+Q VV +G ++ V Y I G ++ R
Sbjct: 159 LSRVNALELF-PQCLCLAPTYELALQTGRVVERMGKFCVDVEVMYAIRGNRIPRGTEVTK 217
Query: 139 QIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QI++G+PG + K K +++ +R+F++DEAD +I+T GF + I LP QML
Sbjct: 218 QIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQML 277
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ ++ + DP +I+ L ++Q L C+N +Y + L
Sbjct: 278 LFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVL---CENRKGKY----QAL 330
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + + LSG + R + + F+ GK
Sbjct: 331 CNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKE 390
Query: 317 RILVTTDLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGTRGLVITIVS 370
++L+TT++ ARGID V +V+N ++P D TYLHR+GR GR+G +GL ++
Sbjct: 391 KVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMIE 450
Query: 371 AESLVKFHSLMGEIN 385
+ L + N
Sbjct: 451 VDKLPLLMKIQDHFN 465
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 425 (154.7 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 100/338 (29%), Positives = 185/338 (54%)
Query: 40 GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99
G+ + S IQ + P +L G+D I Q+++GTGK+ F + L++ I ++PQ +ILAPT
Sbjct: 25 GYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR-IDPSKREPQALILAPT 83
Query: 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVGSPGRIKQMIKLK 155
RE+A+Q+ + + + V GG Q++ + QIVV +PGR+ ++
Sbjct: 84 RELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRD 143
Query: 156 YLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV 215
+ +V ++DEAD+++ GF++D+ I+ +P +Q ++ SAT A ++++
Sbjct: 144 EKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLK 203
Query: 216 DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLV-QLLSQTPFNQCVIFSNY 274
DP ++ + T+ + ++Q L+ + D++ V LL F+ ++F
Sbjct: 204 DPKHVKIQSKTQTVTAIEQAHLLV---------HADQKTSAVLSLLEVEDFDALIMFVRT 254
Query: 275 QLRPEVICENLANANFGAEYLSG--AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAA 332
+ + L + A L+G AQ+Q+ R+ +DS K G++ I+V TD+AARG+D
Sbjct: 255 KQATLDLASALEAKGYKAAALNGDIAQNQRERV--IDSLKDGRLDIVVATDVAARGLDVP 312
Query: 333 NVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
+ V N+++P+D +Y+HR+GR GR G G + +V+
Sbjct: 313 RITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVT 350
Score = 45 (20.9 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 727 DRPLVHGPNSVPKIDTP 743
+RPLV PNS P+ D P
Sbjct: 442 ERPLV--PNSAPRGDRP 456
Score = 44 (20.5 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 653 NSATLDKTEKESVNNVESKDERPPSTANNPD 683
N A ++K E+ V N + +RP + + PD
Sbjct: 435 NLAAIEK-ERPLVPNSAPRGDRPERSGDRPD 464
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 437 (158.9 bits), Expect = 1.7e-39, P = 1.7e-39
Identities = 116/381 (30%), Positives = 198/381 (51%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D +++ + Q L+ G + IQ A P L G D + SK+G+GK++ F++ AL ++I
Sbjct: 5 DFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVI 64
Query: 85 K---LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRP 137
L + P+ +IL PTRE+A Q+ +R + A+ + + +GG Q + +
Sbjct: 65 STRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISV-LGGENFNDQAKALAKE 123
Query: 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-PMKQML 196
+V +PGRI ++ K L ++ + L I+DEAD++++ GF + I +Q L
Sbjct: 124 PHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTL 183
Query: 197 VVSATYSHDNLATLQKYMV-DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
+ SAT H + + ++ +PL + A + Q + L C ++D ++
Sbjct: 184 MFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYL---CD-----HLDHKEA 235
Query: 256 LV-QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
L+ +LLS Q +IF+ + E + L+ F LSG Q AR +D F RG
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARG 295
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
+ +ILVTTD+A+RG+D NV LVIN ++P A Y+HR+GR GR G +G I++V +
Sbjct: 296 QQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDW 355
Query: 375 VKFHSLMGEINLDHAFNVGLV 395
F + ++ L F + ++
Sbjct: 356 DSFKKV--QLFLRKTFEISVI 374
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 437 (158.9 bits), Expect = 1.7e-39, P = 1.7e-39
Identities = 118/392 (30%), Positives = 192/392 (48%)
Query: 31 PIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL---IKLP 87
P+ L E + + +PIQ A P V G D I + +G+GK+ F + L KL I
Sbjct: 18 PLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLREDISSG 77
Query: 88 VQQPQT-----IILAPTREIAVQITDVVRSVGAH----VKNLHVDYFIGGTQVERP---- 134
+ + ++L PTRE+A Q+ D ++S H +K L V GG V
Sbjct: 78 SKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAV---FGGVSVNIQMLAL 134
Query: 135 KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQ 194
+ V I+V +PGR+ +I + +D V+ ++DEAD++++ GF E++T + + P KQ
Sbjct: 135 RGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQ 194
Query: 195 MLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254
L+ SAT+ Q+ + +P+ I+ + A L V+++ + N ++
Sbjct: 195 TLLFSATFPEQVTTLTQELLNNPIEIQLQSADASTL-VQRVFTV-----NKG----EKTA 244
Query: 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
L L+ Q + Q +IF N + E + E LA A G + Q R LD FK G
Sbjct: 245 VLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAG 304
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
+ +L+ TD+AARG+D + +VIN +P + Y+HR+GR+GR G GL I+++ E
Sbjct: 305 DIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDY 364
Query: 375 VKFHSL--MGEINLDHAFNVGLVPDNLTGDQI 404
F + + L G +TGD I
Sbjct: 365 HHFSVIEKKNKFRLKREQVEGFEAAEITGDSI 396
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 437 (158.9 bits), Expect = 1.7e-39, P = 1.7e-39
Identities = 116/381 (30%), Positives = 198/381 (51%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D +++ + Q L+ G + IQ A P L G D + SK+G+GK++ F++ AL ++I
Sbjct: 5 DFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVI 64
Query: 85 K---LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRP 137
L + P+ +IL PTRE+A Q+ +R + A+ + + +GG Q + +
Sbjct: 65 STRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISV-LGGENFNDQAKALAKE 123
Query: 138 VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP-PMKQML 196
+V +PGRI ++ K L ++ + L I+DEAD++++ GF + I +Q L
Sbjct: 124 PHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTL 183
Query: 197 VVSATYSHDNLATLQKYMV-DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
+ SAT H + + ++ +PL + A + Q + L C ++D ++
Sbjct: 184 MFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYL---CD-----HLDHKEA 235
Query: 256 LV-QLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
L+ +LLS Q +IF+ + E + L+ F LSG Q AR +D F RG
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARG 295
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
+ +ILVTTD+A+RG+D NV LVIN ++P A Y+HR+GR GR G +G I++V +
Sbjct: 296 QQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDW 355
Query: 375 VKFHSLMGEINLDHAFNVGLV 395
F + ++ L F + ++
Sbjct: 356 DSFKKV--QLFLRKTFEISVI 374
>UNIPROTKB|J3QL17 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP000842 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:18698
ChiTaRS:DDX25 Ensembl:ENST00000530414 Uniprot:J3QL17
Length = 468
Score = 436 (158.5 bits), Expect = 2.2e-39, P = 2.2e-39
Identities = 113/364 (31%), Positives = 191/364 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ +++ + +G+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 102 FE-ELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAM 160
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV- 138
L+++ L + PQ + LAPT E+A+Q VV +G ++ V Y I G ++ R
Sbjct: 161 LSRVNALELF-PQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK 219
Query: 139 QIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QI++G+PG + KLK +++ +R+F++DEAD +I+T GF + I LP QML
Sbjct: 220 QIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQML 279
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ ++ + DP +I+ L ++Q L C++ +Y + L
Sbjct: 280 LFSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVL---CEHRKDKY----QAL 332
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + + LSG + R + + F+ GK
Sbjct: 333 CNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE 392
Query: 317 RILVTTDLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGTRGLVITIVS 370
++L+TT++ ARGID V +V+N ++P D TYLHR+GR GR+G +GL ++
Sbjct: 393 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIE 452
Query: 371 AESL 374
+ L
Sbjct: 453 VDEL 456
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 436 (158.5 bits), Expect = 2.2e-39, P = 2.2e-39
Identities = 110/341 (32%), Positives = 188/341 (55%)
Query: 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQ--------QPQ 92
F K SPIQ +P++L+G D I +K+G+GK++ F + A+ ++K + P
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 93 TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIG---GTQVERPKRPVQIVVGSPGRIK 149
++L+PTRE+AVQI+DV+R G + + G G Q+ + V IV+G+PGR++
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 253
Query: 150 QMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLAT 209
+I+ L + V ++DEAD++++ GF E + +I S ++QM++ SAT+ D
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKL 313
Query: 210 LQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQ---TPFN 266
Q++M DP I+ + L ++ +I E + R +++L+ LL + + N
Sbjct: 314 AQEFM-DPNPIKVIIGSVDLAANHDVMQII-EVLDERAR----DQRLIALLEKYHKSQKN 367
Query: 267 QCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAA 326
+ ++F+ Y++ E + L + A + G + Q R SL FK G +LV TD+AA
Sbjct: 368 RVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAA 427
Query: 327 RGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
RG+D +V++VIN P Y+HR+GR GR G +G+ T
Sbjct: 428 RGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHT 468
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 406 (148.0 bits), Expect = 2.5e-39, Sum P(3) = 2.5e-39
Identities = 115/349 (32%), Positives = 185/349 (53%)
Query: 40 GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99
GF S IQ P +L G D I +K+G+GK+ F + LN+L + P +IL PT
Sbjct: 23 GFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGV-FAVILTPT 81
Query: 100 REIAVQITDVVRSVGAHVKNLHVDYFIGG----TQ-VERPKRPVQIVVGSPGRIKQMIK- 153
RE+AVQI + ++GA + N++ IGG TQ + KRP I+V +PGR+ +
Sbjct: 82 RELAVQIGEQFNAIGAPM-NVNCSVVIGGIDNVTQALILDKRP-HIIVATPGRLASHLNN 139
Query: 154 -LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP--MKQMLVVSATYSHDNLATL 210
LK + + + ++DEAD+L+ F +I I LPP +Q L+ SAT + NL L
Sbjct: 140 GLK-IALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPEKRQTLLFSATMTK-NLTKL 197
Query: 211 QKYMVD-PLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCV 269
++ P + + +KQ +P P+ ++ LV +L + + +
Sbjct: 198 DSIALNKPFIFEDNSKYDTVDTLKQEYIYMPA---PT-----KDCYLVYILKKHEGSSAI 249
Query: 270 IFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGI 329
+F N E + L + + L DQK+RLA+L +FK GKV++LV TD+A+RG+
Sbjct: 250 VFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGL 309
Query: 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE--SLVK 376
D +V +VIN ++ + + Y+HR+GR R+G G I+ ++ SL+K
Sbjct: 310 DIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIK 358
Score = 51 (23.0 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 414 LAKPLDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEE 473
L K L + +E E +++ TK + KE+TK ++ +K T E++
Sbjct: 415 LQKQLKEVNNKEKFENNNNDNNNNNKTKTTKPENKKEITK--IQEQPSKSTTTTKSIEKK 472
Query: 474 SDSENDGKPDEN 485
+ K D++
Sbjct: 473 PTTIESKKIDKD 484
Score = 48 (22.0 bits), Expect = 2.5e-39, Sum P(3) = 2.5e-39
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 1084 HNDSLDIKLRKKLKPGHR--LQRNSKKRHSKISTERSNSNSAPREKSSDAKQAANEE 1138
H D ++ +++K + R LQ+ K+ ++K E +N+++ K+ K +E
Sbjct: 395 HLDEIEFGVKQKERRTERNELQKQLKEVNNKEKFENNNNDNNNNNKTKTTKPENKKE 451
Score = 42 (19.8 bits), Expect = 2.9e-37, Sum P(2) = 2.9e-37
Identities = 13/58 (22%), Positives = 20/58 (34%)
Query: 832 DSNRPNANTDPSTGKNVKDIQSREIKSYASLSMFSPCQTTLN--KFDTQYNSSDYQSD 887
++N T P K + IQ + KS + TT+ K D + D
Sbjct: 436 NNNNKTKTTKPENKKEITKIQEQPSKSTTTTKSIEKKPTTIESKKIDKDIKRKENNFD 493
Score = 40 (19.1 bits), Expect = 2.5e-39, Sum P(3) = 2.5e-39
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 1736 EFDPKRLHSKESSHKRNRKANDFND 1760
E P + SK+ RK N+F+D
Sbjct: 470 EKKPTTIESKKIDKDIKRKENNFDD 494
Score = 37 (18.1 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 495 KEFKTQEKCVK-GAGEDENGDRKASKDEQKIDGANSAEKSLEDKHGKKITNSFEAVGEIV 553
KE T K V+ E E G ++ + ++ N +K L++ + K+ FE
Sbjct: 383 KEASTARKIVEIHLDEIEFGVKQKERRTER----NELQKQLKEVNNKE---KFE------ 429
Query: 554 QNDTETTKENNQTDEVPEEN 573
N+ NN+T EN
Sbjct: 430 -NNNNDNNNNNKTKTTKPEN 448
>FB|FBgn0024804 [details] [associations]
symbol:Dbp80 "Dead box protein 80" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0044614 "nuclear pore
cytoplasmic filaments" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0015031 GO:GO:0031965 GO:GO:0005643 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AF005239 ProteinModelPortal:O61305 SMR:O61305 PaxDb:O61305
PRIDE:O61305 FlyBase:FBgn0024804 InParanoid:O61305
OrthoDB:EOG4BCC38 Bgee:O61305 GermOnline:CG17023 Uniprot:O61305
Length = 460
Score = 434 (157.8 bits), Expect = 3.6e-39, P = 3.6e-39
Identities = 107/360 (29%), Positives = 187/360 (51%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIK 85
++ + +G+ GF S IQ A P +L + I QS+SGTGK+ FV+A L++ +
Sbjct: 80 LKASLLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR-VN 138
Query: 86 LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-IVVGS 144
+ + PQ + L+PT E+A+Q +V +G + + + + + G +V+R K+ + I++G+
Sbjct: 139 VCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRGEEVDRSKKIEEHILIGT 198
Query: 145 PGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATY 202
PG++ IK + +M + +F++DEAD +I T G + I+ L P QML SATY
Sbjct: 199 PGKLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHCQMLFFSATY 258
Query: 203 SHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQ 262
+ + + + DP +IR L +KQ +CKN +Y + +
Sbjct: 259 GKEVMDFARLIVADPTIIRLMREEESLENIKQYYV---KCKNEEGKY----NAIQNIYGC 311
Query: 263 TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTT 322
Q +IF + + + + + L+G RL LD F+ G ++L+TT
Sbjct: 312 ISVGQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLEKVLITT 371
Query: 323 DLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGTRGLVITIVSAESLVK 376
++ +RGID + +V+N ++P D TYLHR+GR GR+G G+ I +++ E +K
Sbjct: 372 NILSRGIDIEQLQVVVNFDLPVDLDGMADCETYLHRIGRTGRFGKSGIAINLITDEKTMK 431
>UNIPROTKB|F1MSI6 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003676 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
IPI:IPI00724449 OMA:WHFAERI EMBL:DAAA02063102
Ensembl:ENSBTAT00000005587 Uniprot:F1MSI6
Length = 483
Score = 433 (157.5 bits), Expect = 4.5e-39, P = 4.5e-39
Identities = 114/364 (31%), Positives = 189/364 (51%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ +++ + +G+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 99 FE-ELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAM 157
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV- 138
L+++ L + PQ + LAPT E+A+Q VV +G ++ V Y I G ++ R
Sbjct: 158 LSRVNALKLF-PQCLCLAPTYELALQTGRVVERMGKFCVDVQVMYAIRGNRIPRGTDVTK 216
Query: 139 QIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + K K +++ +R+F++DEAD +I+T GF + I LP QML
Sbjct: 217 QIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFADQSIRIQRALPSECQML 276
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ ++ + DP +I+ L ++Q L C N +Y + L
Sbjct: 277 LFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVL---CGNRKDKY----QAL 329
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + + LSG R + + F+ GK
Sbjct: 330 CNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKE 389
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAA------TYLHRMGRAGRYGTRGLVITIVS 370
++L+TT++ ARGID V +V+N ++P + A TYLHR+GR GR+G +GL ++
Sbjct: 390 KVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIE 449
Query: 371 AESL 374
+ L
Sbjct: 450 VDKL 453
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 433 (157.5 bits), Expect = 4.5e-39, P = 4.5e-39
Identities = 101/349 (28%), Positives = 184/349 (52%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQP 91
+ + L+ G+ +P+QM P L G D I + +G+GK++ F++ + + ++ P
Sbjct: 181 LERNLKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRALQSESASP 240
Query: 92 QT---IILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVGS 144
+IL PTRE+A+QI + + + + N+ +GG Q+ R K ++IV+G+
Sbjct: 241 SCPACLILTPTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNIKIVIGT 300
Query: 145 PGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204
PGR+ +++K K + +D VR ++DEAD ++ GF + + I Q+P Q L+ SAT
Sbjct: 301 PGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTSATIPT 360
Query: 205 DNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTP 264
++ DP+ I +P V+Q+V + E PS ++KKL ++L+
Sbjct: 361 GTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEE---PS-----KKKKLFEILNDEK 412
Query: 265 FNQ--CVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRGKVRILVT 321
Q V+F + +L +++CE + + + + Q R + G+ ++++
Sbjct: 413 LYQPPVVVFVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDVVIS 472
Query: 322 TDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
T + RG+D NV LVIN ++P + Y+H++GRAGR G RG IT ++
Sbjct: 473 TGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMN 521
>UNIPROTKB|Q2TBP1 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0033391
"chromatoid body" evidence=ISS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0007286 "spermatid
development" evidence=ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 GO:GO:0007286
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q9UHL0
HOVERGEN:HBG107989 EMBL:BC109867 IPI:IPI00724449
RefSeq:NP_001033606.1 UniGene:Bt.14611 ProteinModelPortal:Q2TBP1
SMR:Q2TBP1 PRIDE:Q2TBP1 GeneID:508962 KEGG:bta:508962 CTD:29118
InParanoid:Q2TBP1 OrthoDB:EOG4NS3BD NextBio:20868762 Uniprot:Q2TBP1
Length = 483
Score = 432 (157.1 bits), Expect = 5.8e-39, P = 5.8e-39
Identities = 115/375 (30%), Positives = 191/375 (50%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ +++ + +G+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 99 FE-ELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAM 157
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV- 138
L+++ L + PQ + LAPT E+A+Q VV +G ++ V Y I G ++ R
Sbjct: 158 LSRVNALKLF-PQCLCLAPTYELALQTGRVVERMGKFCVDVQVMYAIRGNRIPRGTDVTK 216
Query: 139 QIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + K K +++ +R+F++DEAD +I+T GF + I LP QML
Sbjct: 217 QIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFEDQSIRIQRALPSECQML 276
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ ++ + DP +I+ L ++Q L C N +Y + L
Sbjct: 277 LFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVL---CGNRKDKY----QAL 329
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + + LSG R + + F+ GK
Sbjct: 330 CNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKE 389
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAA------TYLHRMGRAGRYGTRGLVITIVS 370
++L+TT++ ARGID V +V+N ++P + A TYLHR+GR GR+G +GL ++
Sbjct: 390 KVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIE 449
Query: 371 AESLVKFHSLMGEIN 385
+ L + N
Sbjct: 450 VDKLPLLMKIQDHFN 464
>ZFIN|ZDB-GENE-020419-30 [details] [associations]
symbol:ddx19 "DEAD/H (Asp-Glu-Ala-Asp/His) box
polypeptide 19 (DBP5 homolog, yeast)" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-020419-30 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
HSSP:P10081 EMBL:AY099536 IPI:IPI00481107 RefSeq:NP_775365.1
UniGene:Dr.116877 ProteinModelPortal:Q8JGR1 SMR:Q8JGR1
STRING:Q8JGR1 GeneID:192339 KEGG:dre:192339 CTD:192339
InParanoid:Q8JGR1 NextBio:20797174 ArrayExpress:Q8JGR1
Uniprot:Q8JGR1
Length = 487
Score = 432 (157.1 bits), Expect = 5.8e-39, P = 5.8e-39
Identities = 123/400 (30%), Positives = 206/400 (51%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + QG+ GF + S IQ A P +L + I QS+S TGK+ FV+A
Sbjct: 102 FE-ELRLKPQLLQGVYAMGFNRPSKIQETALPMMLAEPPQNLIAQSQSRTGKTAAFVLAM 160
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER-PKRPV 138
L+ + + P+ + + PT E+A+Q V+ +G H + + Y I G ++ER K
Sbjct: 161 LSH-VDTENKWPECLCVCPTYELALQTGKVIEQMGKHYPEVQLVYAIRGNKLERGAKLQE 219
Query: 139 QIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QML
Sbjct: 220 QIVIGTPGTVLDWCQKLKFIDPKKIKVFVLDEADVMIATQGHQDQSVRIQRMLPKTCQML 279
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ ++ + DP +I+ + L +KQ + C + ++ + L
Sbjct: 280 LFSATFEETVWNFAKRIVPDPNIIKLKREEETLDTIKQYYVI---CNSKEEKF----QAL 332
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 333 CNIYGAITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAVIERFRDGKE 392
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL I +
Sbjct: 393 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINM-- 450
Query: 371 AESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRV 410
A+S ++L I DH FN + + L D ++ +++
Sbjct: 451 ADSKFSMNTL-NRIQ-DH-FNKKI--EKLDTDDLDEIEKI 485
>UNIPROTKB|F1PIZ6 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:AAEX03003382 Ensembl:ENSCAFT00000016722 Uniprot:F1PIZ6
Length = 462
Score = 430 (156.4 bits), Expect = 9.5e-39, P = 9.5e-39
Identities = 113/375 (30%), Positives = 191/375 (50%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ +++ + +G+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 78 FE-ELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAM 136
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV- 138
L+++ L + PQ + LAPT E+A+Q VV +G ++ V Y I G + R
Sbjct: 137 LSRVNTLELF-PQCLCLAPTYELALQTGRVVERMGKFCVDVQVMYAIRGNHIPRGTDVTK 195
Query: 139 QIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QI++G+PG + K K +++ +R+F++DEAD +I+T GF + I LP QML
Sbjct: 196 QIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQML 255
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ ++ + DP +I+ L ++Q L C+N +Y + L
Sbjct: 256 LFSATFEDSVWQFAERIIPDPNVIKLRKEELTLSNIRQYYVL---CENRKDKY----QAL 308
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + + LSG R + + F+ GK
Sbjct: 309 CNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKE 368
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAA------TYLHRMGRAGRYGTRGLVITIVS 370
++L+TT+++ RGID V +V+N ++P + A TYLHR+GR GR+G +GL ++
Sbjct: 369 KVLITTNVSRRGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIE 428
Query: 371 AESLVKFHSLMGEIN 385
+ L + N
Sbjct: 429 VDKLPLLMKIQDHFN 443
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 430 (156.4 bits), Expect = 9.5e-39, P = 9.5e-39
Identities = 117/364 (32%), Positives = 196/364 (53%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV----VAAL 80
D+ P+ + L++ G + +PIQ+ P VL+G D I + +G+GK++VFV + AL
Sbjct: 101 DMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILAL 160
Query: 81 NKLIKLPV---QQPQTIILAPTREIAVQITDVVRS-VGAHVKN----LHVDYFIGG---- 128
+ I +P+ + P +++ P+RE+A Q DVV V + V++ L IGG
Sbjct: 161 QEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMR 220
Query: 129 TQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ 188
+Q++ K+ V IVV +PGR+K ++ K +++D+ RL +DEAD+L++ GF +DI ++
Sbjct: 221 SQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDH 280
Query: 189 LPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLR 248
+Q L+ SAT A +Q + L ++P G L +I E +
Sbjct: 281 FKSQRQTLLFSATMP----AKIQIFATSAL-VKPVTVNVGRAGAANL-DVIQE-----VE 329
Query: 249 YVDEEKKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLA 306
YV +E K+V LL Q +IF + + I E L A + G +DQ+ R
Sbjct: 330 YVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDY 389
Query: 307 SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVI 366
++ FK GK +LV TD+A++G+D ++ VIN ++P + Y+HR+GR GR G G+
Sbjct: 390 AISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIAT 449
Query: 367 TIVS 370
T ++
Sbjct: 450 TFIN 453
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 449 (163.1 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 112/371 (30%), Positives = 197/371 (53%)
Query: 12 KDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGK 71
K + N F++ + + +++ GF K +PIQ A+P VL G D I +++GTGK
Sbjct: 233 KRPIPNPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGK 292
Query: 72 SIVFVVAALNKLIKLPV-----QQPQTIILAPTREIAVQITDVVRSVGAHVKNLH-VDYF 125
++ +++ L+ P +P ++L PTRE+A+Q+ K L V +
Sbjct: 293 TLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYS--YKGLRSVCVY 350
Query: 126 IGGT---QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDI 182
GG Q+E K+ V I++ +PGR+ + ++N+ ++ ++DEADK+++ GF I
Sbjct: 351 GGGNRDEQIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQI 410
Query: 183 TWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPEC 242
I + P +Q ++ SAT+ H Q Y+ +P+++ +G LVA +
Sbjct: 411 MKILLDVRPDRQTVMTSATWPHSVHRLAQSYLKEPMIV--------YVGTLDLVA-VSSV 461
Query: 243 KNPSLRYVDEEK-KLVQ--LLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQ 299
K + +EEK +Q L S + ++ ++F + + + + +L N E L G +
Sbjct: 462 KQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDR 521
Query: 300 DQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY 359
+Q+ R +L++FK GKVRIL+ TDLA+RG+D +V V N + P + Y+HR+GR GR
Sbjct: 522 EQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRA 581
Query: 360 GTRGLVITIVS 370
G G+ IT ++
Sbjct: 582 GRTGVSITTLT 592
Score = 42 (19.8 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 1012 MPKRDLVVYDDAFDMFSPAANNLDEYEIDYVEQPVDEKKSRRELSQKMDSDRYRP 1066
+ + D V + ++ A ++ E + E+ + +RE+ +KM+ + RP
Sbjct: 591 LTRNDWRVASELINILERANQSIPEELVSMAER-FKAHQQKREMERKMERPQGRP 644
Score = 38 (18.4 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 1677 GRIGSNKRTGFQLTSL 1692
GR G RTG +T+L
Sbjct: 576 GRTGRAGRTGVSITTL 591
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 429 (156.1 bits), Expect = 1.2e-38, P = 1.2e-38
Identities = 117/361 (32%), Positives = 195/361 (54%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQP 91
++Q ++ GF + + IQ A P +L G D I +S +GTGK++ +++ L+K I V+QP
Sbjct: 9 LQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHK-INPEVKQP 67
Query: 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVGSPGR 147
Q ++LAPTRE+ +QI + V+ A + + IGG QVE+ K+ +++VGSPGR
Sbjct: 68 QVVVLAPTRELVMQIHEEVQKFTAGTE-ISGASLIGGADIKRQVEKLKKHPRVIVGSPGR 126
Query: 148 IKQMIKLKYLNMDSVRLFIMDEADKLINT---GFVEDITWIYSQLPPMKQMLVVSATYSH 204
I ++I++K L M V+ + DE D+++ G V+D+ I S + +Q++ SAT +
Sbjct: 127 ILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDV--IKSTMRD-RQLVFFSATMTK 183
Query: 205 DNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTP 264
+ V+P L+R A L V+ + C+ E+ V+ +
Sbjct: 184 AAEDAARDLAVEPQLVRVTRAESKSL-VEHTYII---CERR------EKNDYVRRIMHMG 233
Query: 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324
+ V F N R + I E L A L ++ R A++ +F+ GK+ IL+ TD+
Sbjct: 234 DVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDI 293
Query: 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES---LVKFHSLM 381
AARGID ++ VI+LE+P Y+HR GR GR G G V+++V+ + L++F +
Sbjct: 294 AARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKKL 353
Query: 382 G 382
G
Sbjct: 354 G 354
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 435 (158.2 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 119/372 (31%), Positives = 194/372 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F D+ I P +GL+E+ F+K + IQ + P L G+D + +K+G+GK++ F+V +
Sbjct: 42 FFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIE 101
Query: 82 KLIKLPVQQPQ---TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQV----ERP 134
KL + + +I++PTRE+A+QI +V+ +G+H + IGG V ER
Sbjct: 102 KLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHT-SFSAGLVIGGKDVKFELERI 160
Query: 135 KRPVQIVVGSPGRIKQMIKLKY-LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193
R + I++G+PGRI Q + LN ++++ ++DEAD+ ++ GF + + I S L P +
Sbjct: 161 SR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSR 219
Query: 194 QMLVVSATYSHDNLATLQKY-MVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDE 252
Q L+ SAT S ++A L + + D + D + G A PE V
Sbjct: 220 QTLLFSATQSQ-SVADLARLSLTDYKTVGTHDV---MDGSVNKEASTPETLQQFYIEVPL 275
Query: 253 EKKLVQLLSQTPFN-QC--VIFSNYQLRPEVICENLANANFGAE--YLSGAQDQKARLAS 307
KL L S + +C ++F + + + E G +L G Q Q+AR +
Sbjct: 276 ADKLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTET 335
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRG---L 364
LD F R + L TD+ ARGID VD V+ ++ P D TY+HR+GR RYG +G +
Sbjct: 336 LDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLI 395
Query: 365 VITIVSAESLVK 376
++T E+ +K
Sbjct: 396 MLTPQEQEAFLK 407
Score = 71 (30.1 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 25/138 (18%), Positives = 55/138 (39%)
Query: 1021 DDAFDMFSPAANNLDEYEIDYVEQPVDEKKSRRELSQKM------DSDRYRPDSDGD--P 1072
DD F + ++E E+ + P + ++ LS+K ++ + D +G+ P
Sbjct: 563 DDDFISVKRKDHEINEAELPALTLPTSRRAQKKALSKKASLASKGNASKLIFDDEGEAHP 622
Query: 1073 NRRPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKSSDAK 1132
+E H +++ + L + + +++ E+ R ++ +
Sbjct: 623 VYELEDEEEFHKRGDAEVQKTEFLTKESAVMADIDNIDKQVAKEKKQEKKRKRLEAMRRE 682
Query: 1133 QAANEEENITGGNDENKT 1150
A EE I+G +E KT
Sbjct: 683 MEAAMEEEISGDEEEGKT 700
Score = 68 (29.0 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 41/171 (23%), Positives = 73/171 (42%)
Query: 420 QAQERED-----VEQTAEESSKVEN---TKPL-RGAPSKEVTKKG--ASKEGTKWNLTDG 468
QAQE ED V++ E ++ E T P R A K ++KK ASK + D
Sbjct: 557 QAQEDEDDDFISVKRKDHEINEAELPALTLPTSRRAQKKALSKKASLASKGNASKLIFDD 616
Query: 469 QSEEESDSENDGKPDENGSQRGSK--RSKEFKTQEKCVKGAGEDENGDRKASKD---EQK 523
+ E E + +E +RG + EF T+E V + +N D++ +K+ E+K
Sbjct: 617 EGEAHPVYELED--EEEFHKRGDAEVQKTEFLTKESAVMA--DIDNIDKQVAKEKKQEKK 672
Query: 524 IDGANSAEKSLEDKHGKKITNSFEAVGEIVQNDTETTKENNQTDEVPEENG 574
+ + +E ++I+ E + T ++ ++P+ G
Sbjct: 673 RKRLEAMRREMEAAMEEEISGDEEEGKTVAYLGTGNLSDDMSDGDMPDSEG 723
Score = 44 (20.5 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 416 KPLDQAQEREDVEQT------AEESSKV--ENTKPLRGAPSKEVTKKGASKEGTKW-NLT 466
K ++QA+ER++ + A E +V + +K R K +K + + N+T
Sbjct: 495 KTIEQAKERKNAPRQLAFLSKANEDGEVIEDKSKQPRTKYDKMFERKNQTILSEHYLNIT 554
Query: 467 DGQSEEESDSE 477
Q++E+ D +
Sbjct: 555 KAQAQEDEDDD 565
Score = 43 (20.2 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 1798 DVEGENSPTDEDEDANNSQNDGESTAQNSQ 1827
D EGE P E ED G++ Q ++
Sbjct: 615 DDEGEAHPVYELEDEEEFHKRGDAEVQKTE 644
>UNIPROTKB|Q9DGP9 [details] [associations]
symbol:deadsouth "ATP-dependent RNA helicase DDX25"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0032019 "mitochondrial cloud" evidence=IDA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0045495 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032019 HSSP:Q9UHL0 HOVERGEN:HBG107989 CTD:29118
EMBL:AF190623 RefSeq:NP_001082017.1 UniGene:Xl.670
ProteinModelPortal:Q9DGP9 SMR:Q9DGP9 PRIDE:Q9DGP9 GeneID:398180
KEGG:xla:398180 Xenbase:XB-GENE-958142 Uniprot:Q9DGP9
Length = 483
Score = 428 (155.7 bits), Expect = 1.5e-38, P = 1.5e-38
Identities = 116/388 (29%), Positives = 200/388 (51%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + +G+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 99 FE-ELHLKNELLRGIYAMGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGKTAAFVLAM 157
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-PV 138
L++ + + PQ I L+PT E+A+Q VV +G + V Y + G + + R
Sbjct: 158 LSR-VDANKKYPQCICLSPTFELALQTGKVVEEMGKFCAGIEVIYALRGNRPGKGSRLEA 216
Query: 139 QIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + KL+ + ++++ +F++DEAD +IN G + + +P QML
Sbjct: 217 QIVIGTPGTVLDWCFKLRLITVENISVFVLDEADVMINVQGHSDHSVRVKRSMPKSCQML 276
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ A ++ + DP +I+ + L ++Q +C+N +Y L
Sbjct: 277 LFSATFEDSVWAFAERIVPDPNIIKLKKEELTLKNIQQFY---DQCENKEQKY----SAL 329
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
L Q ++F + + + L++ LSG R + F+ G+
Sbjct: 330 CNLYGVITIAQAIVFCQTRKIASWLSQKLSDDGHQVALLSGELPVYDRADMIQRFREGRE 389
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPH------DAATYLHRMGRAGRYGTRGLVITIVS 370
++LVTT++ ARGID V +V+N ++P D TYLHR+GR GR+G +G+ ++++
Sbjct: 390 KVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVSLI- 448
Query: 371 AESLVKFHSLMGEINLDHAFNVGLVPDN 398
E+ F ++ EI DH FN + N
Sbjct: 449 -ENF--FVYMLKEIE-DH-FNTKITKLN 471
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 433 (157.5 bits), Expect = 1.8e-38, P = 1.8e-38
Identities = 119/364 (32%), Positives = 192/364 (52%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVA----AL 80
D+ +P+ L+E G V+ +PIQ+ P +L G D I + +G+GK++VFV+ AL
Sbjct: 150 DMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIAL 209
Query: 81 NKLIKLPV---QQPQTIILAPTREIAVQITDVVRS-----VGAHVKNLHVDYFIGG---- 128
+ + +P+ + P +I+ P+RE+A Q +VV V A L IGG
Sbjct: 210 QEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMR 269
Query: 129 TQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQ 188
+Q+E KR V IVV +PGR+K M+ K +++D+ R +DEAD+L++ GF +DI ++
Sbjct: 270 SQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDH 329
Query: 189 LPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLR 248
+Q L+ SAT + T + L++P G L +I E +
Sbjct: 330 FKSQRQTLLFSAT-----MPTKIQIFARSALVKPVTVNVGRAGAANL-DVIQE-----VE 378
Query: 249 YVDEEKKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLA 306
YV +E K+V LL Q +IF + + I E L A + G +DQ+ R
Sbjct: 379 YVKQEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREY 438
Query: 307 SLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVI 366
++ SFK GK +LV TD+A++G+D ++ VIN ++P + Y+HR+GR GR G G+
Sbjct: 439 AISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 498
Query: 367 TIVS 370
T ++
Sbjct: 499 TFIN 502
>UNIPROTKB|Q5STU3 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AL662847 EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107334 EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 UniGene:Hs.254042
UniGene:Hs.730849 HGNC:HGNC:13917 EMBL:CR942185 IPI:IPI00790636
SMR:Q5STU3 STRING:Q5STU3 Ensembl:ENST00000376177
Ensembl:ENST00000400293 Ensembl:ENST00000430703
Ensembl:ENST00000438578 Ensembl:ENST00000446341
Ensembl:ENST00000450987 Ensembl:ENST00000453488 Uniprot:Q5STU3
Length = 425
Score = 427 (155.4 bits), Expect = 2.0e-38, P = 2.0e-38
Identities = 110/336 (32%), Positives = 177/336 (52%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L +L
Sbjct: 49 DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE 108
Query: 85 KLPVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---- 139
PV Q +++ TRE+A QI+ ++ N+ V F GG +++ + ++
Sbjct: 109 --PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166
Query: 140 -IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLV 197
IVVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+++
Sbjct: 167 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKL 256
SAT S + +K+M DP+ I +D T+ L G++Q + + N ++ +KL
Sbjct: 227 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--N------EKNRKL 278
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
LL FNQ VIF R + + L NF A + Q+ RL+ FK +
Sbjct: 279 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 338
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAATYLHR 352
RILV T+L RG+D V++ N ++P D+ TYLHR
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 374
>UNIPROTKB|F1RVF0 [details] [associations]
symbol:LOC100512980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:ESATTFE
Ensembl:ENSSSCT00000012145 Uniprot:F1RVF0
Length = 462
Score = 427 (155.4 bits), Expect = 2.0e-38, P = 2.0e-38
Identities = 114/375 (30%), Positives = 190/375 (50%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ +++ + +G+ GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 78 FE-ELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAM 136
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV- 138
L+++ L + PQ + LAPT E+A+Q VV +G ++ V Y I G ++ R
Sbjct: 137 LSRVNALELF-PQCLCLAPTYELALQTGRVVERMGRFCVDVQVMYAIRGNRIPRGTDITK 195
Query: 139 QIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QI++G+PG + K K +++ +R+F++DEAD +I+T GF + I LP QML
Sbjct: 196 QIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSGCQML 255
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ ++ + DP +I+ L ++Q L C N +Y + L
Sbjct: 256 LFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVL---CGNRKDKY----QAL 308
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + + L G R A + F+ GK
Sbjct: 309 CNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLRGELTVDQRAAIIQRFRDGKE 368
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDAA------TYLHRMGRAGRYGTRGLVITIVS 370
++L+TT++ ARGID V +V+N ++P + A TYLHR+GR GR+G +GL ++
Sbjct: 369 KVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIE 428
Query: 371 AESLVKFHSLMGEIN 385
+ L + N
Sbjct: 429 VDKLPLLMKIQDHFN 443
>UNIPROTKB|F1S758 [details] [associations]
symbol:LOC100523329 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:CU928873 Ensembl:ENSSSCT00000016589 Uniprot:F1S758
Length = 379
Score = 427 (155.4 bits), Expect = 2.0e-38, P = 2.0e-38
Identities = 113/368 (30%), Positives = 186/368 (50%)
Query: 29 EKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKL 86
++ + +G+ GF + S IQ A P +L + I QS+SGTGK+ FV+A L+++ L
Sbjct: 1 KEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNAL 60
Query: 87 PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV-QIVVGSP 145
+ PQ + LAPT E+A+Q VV +G ++ V Y I G ++ R QI++G+P
Sbjct: 61 ELF-PQCLCLAPTYELALQTGRVVERMGRFCVDVQVMYAIRGNRIPRGTDITKQIIIGTP 119
Query: 146 GRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYS 203
G + K K +++ +R+F++DEAD +I+T GF + I LP QML+ SAT+
Sbjct: 120 GTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSGCQMLLFSATFE 179
Query: 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT 263
++ + DP +I+ L ++Q L C N +Y + L +
Sbjct: 180 DSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVL---CGNRKDKY----QALCNIYGGI 232
Query: 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323
Q +IF + + + + LSG R A + F+ GK ++L+TT+
Sbjct: 233 TIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRAAIIQRFRDGKEKVLITTN 292
Query: 324 LAARGIDAANVDLVINLEIPHDAA------TYLHRMGRAGRYGTRGLVITIVSAESLVKF 377
+ ARGID V +V+N ++P + A TYLHR+GR GR+G +GL ++ + L
Sbjct: 293 VCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLL 352
Query: 378 HSLMGEIN 385
+ N
Sbjct: 353 MKIQDHFN 360
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 427 (155.4 bits), Expect = 2.0e-38, P = 2.0e-38
Identities = 127/444 (28%), Positives = 211/444 (47%)
Query: 30 KP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV 88
KP + L+ GF +PIQ + P +L G D I Q K+G+GK+ F + L+ L +
Sbjct: 12 KPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNL-NVKR 70
Query: 89 QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVGS 144
+ Q ++L PTRE+A Q+ +R++G + N+ V GG Q+ + I+VG+
Sbjct: 71 FRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 130
Query: 145 PGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSH 204
PGRI + +++ + ++DEAD+++ GF E + I + P +Q L+ SATY
Sbjct: 131 PGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPA 190
Query: 205 DNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTP 264
Q + L+I+ E AT ++Q + + + R DE + + LL P
Sbjct: 191 SIEQIAQSVTRNALMIKVE-ATHDTSSIRQYFYKV---EGSAAR--DEALETL-LLHHQP 243
Query: 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324
+ V+F N + + + + L + F L G +Q+ R +L F + ILV TD+
Sbjct: 244 TSS-VVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDV 302
Query: 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384
AARG+D N+D V N ++ D ++HR+GR GR G++GL + S + + +
Sbjct: 303 AARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI--DE 360
Query: 385 NLDHAFNVGLVPDNLTGDQINWTQRVQTLL-------AKPLD-QAQEREDVEQTAEESSK 436
+D A +P G + V + +P D D E TAE K
Sbjct: 361 YMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGK 420
Query: 437 VENTKPLRG--APSKEVTKKGASK 458
+ N P+R A K++ K +K
Sbjct: 421 I-NLFPMRAYVAVHKKIATKALNK 443
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 420 (152.9 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 101/343 (29%), Positives = 176/343 (51%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQP 91
+ G++ G+ + +PIQ A P +L G+D I +++GTGK+ + + + K++ P +
Sbjct: 12 VMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLSTPRGRV 71
Query: 92 QTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVGSPGR 147
+T++LAPTRE+A QI + RS+G + + GG Q+ R + V +VV PGR
Sbjct: 72 RTLVLAPTRELACQIAESFRSLGQRARIRECSIY-GGVNMDQQIRRLRSGVDVVVACPGR 130
Query: 148 IKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNL 207
+ I +++ V I+DEAD++ + GF DI I L Q L+ SAT +
Sbjct: 131 LLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVR 190
Query: 208 ATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQ 267
+ +P+ I+ +G + + + P + + L+++L T
Sbjct: 191 KLTLETQTNPVTIQ--------IGTQAPASSVSHSVYPVKNH-QKTPLLIEILKTTETKS 241
Query: 268 CVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327
+IF+ + E + + ++ A F L G Q R A ++ F+RG +ILV TD+AAR
Sbjct: 242 VLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAAR 301
Query: 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
G+D ++ VIN ++P Y HR+GR GR+ G +++V+
Sbjct: 302 GLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVT 344
Score = 39 (18.8 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 19/73 (26%), Positives = 30/73 (41%)
Query: 425 EDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSENDGKPDE 484
ED A+ ++ N +P A KE + A+K + G+ + +EN E
Sbjct: 459 EDAPMAAKPVARF-NARP---AFRKEDDAQAAAKAYPSF----GRETGVTSAENTRSVSE 510
Query: 485 NGSQRGSKRSKEF 497
N Q S+R F
Sbjct: 511 NPEQFSSRRPARF 523
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 428 (155.7 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 108/355 (30%), Positives = 184/355 (51%)
Query: 36 LQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI---------KL 86
++ G+ + +P+Q A P VL G D +V +++GTGK+ F + L +L +
Sbjct: 16 IEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRH 75
Query: 87 PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIG---GTQVERPKRPVQIVVG 143
+QP+ ++L PTRE+A Q+ D + +K + F G QV+ R V ++V
Sbjct: 76 GPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQAMARGVDVLVA 135
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
PGR+ + +++ V + ++DEAD++++ GFV D+ + ++LP +Q L+ SAT+S
Sbjct: 136 CPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFS 195
Query: 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT 263
D K + +P I + ++Q V +P +L L L++
Sbjct: 196 KDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRAL--------LAHLITAG 247
Query: 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323
+ Q ++F+ + + E L A + G + Q AR +L FK G+VRILV TD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVATD 307
Query: 324 LAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA--ESLVK 376
+AARG+D + V+N E+P+ Y+HR+GR GR G G I++V+ E L+K
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLK 362
Score = 60 (26.2 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 35/191 (18%), Positives = 70/191 (36%)
Query: 419 DQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSEN 478
D+ +++ E+ A KP G P++E + + D + + +
Sbjct: 423 DKGKDKGGKEKPARGERPAREQKPREGTPAREQRQPTPRADRAPDEFLDDDVDNFGNRAD 482
Query: 479 DGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGD----RKASKDEQKIDGANSAEKSL 534
P +N + +G R Q GAG G + S + + +G+ +
Sbjct: 483 YVSPYQNKNNQGRGRRPGAPAQGA---GAGNPPRGGAGGGQGRSGNPRNSNGSTTGTAPA 539
Query: 535 EDKHGKKITNSFEAVGEIVQNDTETTKENNQTDEVPEENGLVGNPNKAEVGDLNECESCT 594
+ G + ++ G + D + N+ D+ P + V NP + +++ ES
Sbjct: 540 KRSGGPRNGAPRDSQG---RRDEPRNRRPNRDDQ-PRQEPAVQNPRGNQPKIMHK-ESKA 594
Query: 595 DSFHMNEHSDE 605
D F E D+
Sbjct: 595 DRFPTPEQLDQ 605
Score = 57 (25.1 bits), Expect = 5.8e-38, Sum P(2) = 5.8e-38
Identities = 43/207 (20%), Positives = 73/207 (35%)
Query: 933 PERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSFAGETPRSKGGFDSYLDQS 992
PE R VRN R+ R G GG G + KD G+ ++G + +
Sbjct: 390 PEVRERPDVRNP-RNPRGPRGDGPNGGGGGGGRKDKGKDKG--GKEKPARGERPAREQKP 446
Query: 993 MDSFLDKSCREESFLKRSHMPKRDLVVYDDAFDMFSPAANNLDEYEIDYVEQPVDEKKSR 1052
+ + R+ + + P L DD D F A+ + Y+ ++ + R
Sbjct: 447 REGTPAREQRQPT-PRADRAPDEFL---DDDVDNFGNRADYVSPYQ-----NKNNQGRGR 497
Query: 1053 RELSQKMDSDRYRPDSDGDPNRRPSSQESLHHNDSLDIKLRKKLKPGHR--LQRNSKKRH 1110
R + + P G + S + N S K G R R+S+ R
Sbjct: 498 RPGAPAQGAGAGNPPRGGAGGGQGRSGNPRNSNGSTTGTAPAKRSGGPRNGAPRDSQGRR 557
Query: 1111 SKISTERSNSNSAPREKSSDAKQAANE 1137
+ R N + PR++ + N+
Sbjct: 558 DEPRNRRPNRDDQPRQEPAVQNPRGNQ 584
Score = 49 (22.3 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 25/97 (25%), Positives = 35/97 (36%)
Query: 887 DSKPYGDRTKRRSRPRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSDGVRNDTR 946
D +G+R S P +NK N G A P G + RS RN
Sbjct: 473 DVDNFGNRADYVS-PYQNKNNQGRGRRPGAPAQGAGAGNPPRGGAGGGQGRSGNPRNS-- 529
Query: 947 DERNGAYTGDKGGRNRGHSVNSR-KDHSFAGETPRSK 982
NG+ TG + G N +D + PR++
Sbjct: 530 ---NGSTTGTAPAKRSGGPRNGAPRDSQGRRDEPRNR 563
Score = 46 (21.3 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 31/145 (21%), Positives = 58/145 (40%)
Query: 857 KSYASLSMFSPCQTTLNKFDTQYNSSDYQSDSKPYG-DRTKRRSRPRKNKENTDILNTLG 915
+S ++S+ +P + L K + + +D G D + + + +E D+ N
Sbjct: 345 RSGEAISLVAPDEEKLLK-SIERMTKQKIADGDLMGFDASAVEAEKPEVRERPDVRNP-- 401
Query: 916 QDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSFA 975
++ G P+GG G R D ++ G +G R ++ + A
Sbjct: 402 RNPRGPRGDGPNGGG-------GGGGRKDKGKDKGGKEKPARGERPAREQ--KPREGTPA 452
Query: 976 GE----TPRSKGGFDSYLDQSMDSF 996
E TPR+ D +LD +D+F
Sbjct: 453 REQRQPTPRADRAPDEFLDDDVDNF 477
Score = 45 (20.9 bits), Expect = 6.9e-37, Sum P(3) = 6.9e-37
Identities = 17/77 (22%), Positives = 32/77 (41%)
Query: 658 DKTEKESVNNVESKDERPPSTANNPDGT----EWEDIP-SDTIPNDETSNDNKLTPVDFD 712
DK + + ++ ERP +GT + + P +D P++ +D D
Sbjct: 423 DKGKDKGGKEKPARGERPAREQKPREGTPAREQRQPTPRADRAPDEFLDDDVDNFGNRAD 482
Query: 713 YINDFVNQTPSETGDRP 729
Y++ + N+ G RP
Sbjct: 483 YVSPYQNKNNQGRGRRP 499
Score = 44 (20.5 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 26/104 (25%), Positives = 38/104 (36%)
Query: 883 DYQSDSKPY-GDRTKRRSRPRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSDGV 941
D KP G+R R +PR+ T +++ TP R P+ D V
Sbjct: 427 DKGGKEKPARGERPAREQKPREG--------TPAREQRQP---TPRAD-RAPDEFLDDDV 474
Query: 942 RN-DTRDERNGAYTGDKGGRNRGHSVNSRKDHSFAGETPRSKGG 984
N R + Y +K + RG + + AG PR G
Sbjct: 475 DNFGNRADYVSPYQ-NKNNQGRGRRPGAPAQGAGAGNPPRGGAG 517
Score = 43 (20.2 bits), Expect = 6.9e-37, Sum P(3) = 6.9e-37
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 920 SAHGRTP---SGGHRTPERRRSDGVRNDTRDER 949
S G P SGG R R S G R++ R+ R
Sbjct: 532 STTGTAPAKRSGGPRNGAPRDSQGRRDEPRNRR 564
Score = 40 (19.1 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 15/78 (19%), Positives = 31/78 (39%)
Query: 880 NSSDYQSDSKPYGDRTKRRSRPRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSD 939
N + S + R +R +R + ++ + N G H + + TPE+ D
Sbjct: 547 NGAPRDSQGRRDEPRNRRPNRDDQPRQEPAVQNPRGNQPKIMHKESKADRFPTPEQL--D 604
Query: 940 GVRNDTRDERNGAYTGDK 957
+ + R E+ T ++
Sbjct: 605 QLPSRPRGEKPALLTRNR 622
Score = 40 (19.1 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 505 KGAGEDENGDRKASKDEQKIDGANSAEKSLEDKHGKKITNSFEAVGEIVQNDTETTKENN 564
K G+D+ G K ++ E+ E + + + + A E + +D + N
Sbjct: 422 KDKGKDKGGKEKPARGERPAREQKPREGTPAREQRQPTPRADRAPDEFLDDDVDNF--GN 479
Query: 565 QTDEV-PEEN 573
+ D V P +N
Sbjct: 480 RADYVSPYQN 489
Score = 37 (18.1 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 1380 RGRQANTPTKTIGDTQGKRGG 1400
RGR+ P + G RGG
Sbjct: 495 RGRRPGAPAQGAGAGNPPRGG 515
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 425 (154.7 bits), Expect = 3.2e-38, P = 3.2e-38
Identities = 110/343 (32%), Positives = 185/343 (53%)
Query: 41 FVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTII-LAPT 99
F K +PIQ ++P++L+G D I +++G+GK+ F V A+N +I + +++ ++PT
Sbjct: 173 FDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLSVLCISPT 232
Query: 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ---IVVGSPGRIKQMIKLKY 156
RE+A+QI D + + A ++ GG + R ++ +VV +PGR+ +I
Sbjct: 233 RELALQIYDNLIELTAD-SGVNCVAVYGGVSKDDQIRKIKTANVVVATPGRLVDLINDGA 291
Query: 157 LNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPM-KQMLVVSATYSHDNLATLQKYMV 215
+N+ V ++DEAD+++ GF EDI I S +Q L+ +AT+ + +M
Sbjct: 292 INLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMN 351
Query: 216 DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLL-----SQTPFNQCVI 270
P+ + D R L + + + E N D+EKKL+QLL +++ N+ +I
Sbjct: 352 SPVKVTVGD--RDELSANKRITQVVEVINK----FDKEKKLIQLLRKYNANESSDNKILI 405
Query: 271 FSNYQLRPEVICENLANAN-FGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGI 329
F+ Y+ I EN N F + G Q+ R A+L +FK G+ +L+ TD+AARG+
Sbjct: 406 FALYKKEASRI-ENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGL 464
Query: 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
D NV +VINL P Y+HR+GR GR G +G T+ + +
Sbjct: 465 DIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTED 507
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 425 (154.7 bits), Expect = 3.2e-38, P = 3.2e-38
Identities = 109/358 (30%), Positives = 188/358 (52%)
Query: 40 GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL----IKLPVQQPQTII 95
G+ + +PIQ P ++NG D + +++GTGK+ F + +NK I + + +++I
Sbjct: 21 GYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKSTRSLI 80
Query: 96 LAPTREIAVQITDVVR--SVGAHVKNLHVDYFIGG-TQVERPKRPVQIVVGSPGRIKQMI 152
L PTRE+A QI + S G +K V +G QV+ + + I+V +PGR+ +I
Sbjct: 81 LTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILVATPGRLLDLI 140
Query: 153 KLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQK 212
+ +N ++ +F++DEAD +++ GF +D+ I S+LP +Q L+ SAT + +
Sbjct: 141 ETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMPAEIEILAEA 200
Query: 213 YMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK---LVQLLSQTPFNQCV 269
+ DP I+ T + LV N S+ ++D+ K L +L++ + + +
Sbjct: 201 ILTDPTKIQITAETVTI----DLV-------NQSVYHLDKSNKVPLLFNILTKADYEKVL 249
Query: 270 IFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGI 329
IF + ++I + L A+ A L + Q R +L +FK +R+LV TD+AARGI
Sbjct: 250 IFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGI 309
Query: 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV---SAESLVKFHSLMGEI 384
D N+ LVIN +P D Y+HR+GR R G G+ I+ L + +G++
Sbjct: 310 DVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIENSIGQV 367
>POMBASE|SPBC12C2.06 [details] [associations]
symbol:SPBC12C2.06 "cytoplasmic ATP-dependent RNA
helicase Dbp5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0002184 "cytoplasmic translational termination" evidence=NAS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IC] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0005643 "nuclear pore" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006406 "mRNA
export from nucleus" evidence=ISO] [GO:0006415 "translational
termination" evidence=ISO] [GO:0015031 "protein transport"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC12C2.06 GO:GO:0005829 GO:GO:0005524
GO:GO:0005635 GO:GO:0015031 EMBL:CU329671 GO:GO:0031965
GO:GO:0005643 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0006406
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA OrthoDB:EOG4B2X5R
PIR:T39375 RefSeq:NP_596016.1 PDB:3FHO PDBsum:3FHO
ProteinModelPortal:Q09747 STRING:Q09747 PRIDE:Q09747
EnsemblFungi:SPBC12C2.06.1 GeneID:2539975 KEGG:spo:SPBC12C2.06
EvolutionaryTrace:Q09747 NextBio:20801118 GO:GO:0002184
Uniprot:Q09747
Length = 503
Score = 419 (152.6 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
Identities = 114/350 (32%), Positives = 187/350 (53%)
Query: 30 KP-IRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKL 86
KP + +G+ F K S IQ A P +L+ + I QS+SGTGK+ F + L++ +
Sbjct: 122 KPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSR-VDA 180
Query: 87 PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPG 146
V +PQ I LAP+RE+A QI DVV +G + + + + I + + K QIV+G+PG
Sbjct: 181 SVPKPQAICLAPSRELARQIMDVVTEMGKYTE-VKTAFGIKDSVPKGAKIDAQIVIGTPG 239
Query: 147 RIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHD 205
+ ++K + L+ +++F++DEAD +++ G + I LP Q+++ SAT+S
Sbjct: 240 TVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSER 299
Query: 206 NLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPF 265
+++ + IR + + G+KQL +C++ +Y LV+L
Sbjct: 300 VEKYAERFAPNANEIRLKTEELSVEGIKQLYM---DCQSEEHKY----NVLVELYGLLTI 352
Query: 266 NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325
Q +IF + E I + L+G + R A +DSF+ G ++LVTT++
Sbjct: 353 GQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVI 412
Query: 326 ARGIDAANVDLVINLEIPHDAA------TYLHRMGRAGRYGTRGLVITIV 369
ARGID + V+LV+N ++P D A TYLHR+GR GR+G G+ I V
Sbjct: 413 ARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 462
Score = 38 (18.4 bits), Expect = 3.3e-38, Sum P(2) = 3.3e-38
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 658 DKTEKESVNNVESKDERPPSTANNPDGTEWEDIPSDTI 695
DK E +N ++ +RP + D E E + + +
Sbjct: 464 DKKSWEEMNAIQEYFQRPITRVPTDDYEELEKVVKNAL 501
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 440 (159.9 bits), Expect = 4.1e-38, P = 4.1e-38
Identities = 118/399 (29%), Positives = 207/399 (51%)
Query: 12 KDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGK 71
K L N FE+ + + +++ GF K +PIQ A+P +L G D I +++GTGK
Sbjct: 232 KRPLPNPTCNFEDAFHCYPEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGK 291
Query: 72 SIVFVVAALNKLIKLPVQQ-----PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFI 126
++ +++ + PV Q P ++L PTRE+A+Q+ D S ++ V +
Sbjct: 292 TLSYLMPGFIHIDSQPVLQRARNGPGMLVLTPTRELALQV-DAECSEYSYRGLKSVCIYG 350
Query: 127 GGT---QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDIT 183
GG Q++ + I++ +PGR+ + ++ + S+ ++DEADK+++ GF I
Sbjct: 351 GGDRDGQIKDLSKGADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIM 410
Query: 184 WIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECK 243
I + P +Q ++ SAT+ + Q Y+ +P+++ +G LVA+ +
Sbjct: 411 KILLDVRPDRQTVMTSATWPYAVRRLAQSYLKEPMIV--------YVGTLDLVAVSTVTQ 462
Query: 244 NPSLRYVDEEKKLVQLL--SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQ 301
N + DE++ +Q S +P ++ +IF + + + + +L E L G ++Q
Sbjct: 463 NIIVTTEDEKRSHIQAFIDSMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQ 522
Query: 302 KARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGT 361
R +L SFK GKVRIL+ TDLA+RG+D +V V N + P + Y+HR+GR GR G
Sbjct: 523 SDRERALKSFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGR 582
Query: 362 RGLVITIVSAESLVKFHSLMGE-INLDHAFNVGLVPDNL 399
G+ IT+++ + GE IN+ N VP++L
Sbjct: 583 TGVSITLITRNDW----KIAGELINILERANQS-VPEDL 616
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 405 (147.6 bits), Expect = 4.3e-38, Sum P(2) = 4.3e-38
Identities = 105/374 (28%), Positives = 188/374 (50%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK----LP 87
I L + G+ +PIQ A P V+ G D + +++GTGK++ F L++L + P
Sbjct: 18 ILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSRNASPAP 77
Query: 88 VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKRPVQIVVG 143
V+ + ++LAPTRE+A QI + GA + NL V GG Q+ + +R I+V
Sbjct: 78 VRGTRVLVLAPTRELAGQIATSFGTYGAGL-NLRVVMVCGGAKIGGQIRQLERGAHILVA 136
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYS 203
+PGR+ +++ + +++D V I+DEAD++++ GF+ + I +P +Q L SAT
Sbjct: 137 TPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMP 196
Query: 204 HDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQT 263
+ ++ +P + ++Q V + + + SL L++ +
Sbjct: 197 KAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASL--------LIEKIRDP 248
Query: 264 PFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTD 323
++F+ + + + + LA A+ + + G + Q R +L++FK G+V ILV TD
Sbjct: 249 ELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATD 308
Query: 324 LAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGE 383
+AARGI + VIN ++P ++HR+GR R G G+ I+ S + ++
Sbjct: 309 IAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTLRAIEKL 368
Query: 384 INLDHAFNVGLVPD 397
L A N +PD
Sbjct: 369 TGLKLAPNGVSLPD 382
Score = 51 (23.0 bits), Expect = 4.3e-38, Sum P(2) = 4.3e-38
Identities = 15/59 (25%), Positives = 21/59 (35%)
Query: 803 RIGDNDGTGNRSITRSKQNSQSGDHTDLKDSNRPNANTDPSTGKNVKDIQSREIKSYAS 861
R G+ G G Q SG + S RP+ P G N S+ + A+
Sbjct: 395 RSGNGGGRGGARSGGGYQGQSSGSQSGGSHSGRPHRKGPPGGGANASGQNSQRSSNGAA 453
Score = 45 (20.9 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1175 GDEKRRYWWRSPPGGGPNAA 1194
G R + PPGGG NA+
Sbjct: 422 GSHSGRPHRKGPPGGGANAS 441
Score = 39 (18.8 bits), Expect = 7.8e-37, Sum P(2) = 7.8e-37
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 1387 PTKTIGDTQGKRGGRVNTRS 1406
P K G+ G GGR RS
Sbjct: 388 PGKPQGNRSGNGGGRGGARS 407
Score = 38 (18.4 bits), Expect = 9.9e-37, Sum P(2) = 9.9e-37
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 933 PERRRSD--GVRNDTRDERNGAYTGDKGGRNRGHSVNSR 969
P+ RS G R R G Y G G G S + R
Sbjct: 391 PQGNRSGNGGGRGGARS--GGGYQGQSSGSQSGGSHSGR 427
>UNIPROTKB|J9NSS1 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063236 CTD:29118 EMBL:AAEX03003382
RefSeq:XP_536532.3 Ensembl:ENSCAFT00000048680 GeneID:479396
KEGG:cfa:479396 Uniprot:J9NSS1
Length = 369
Score = 423 (154.0 bits), Expect = 5.3e-38, P = 5.3e-38
Identities = 111/357 (31%), Positives = 180/357 (50%)
Query: 40 GFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILA 97
GF + S IQ A P +L + I QS+SGTGK+ FV+A L+++ L + PQ + LA
Sbjct: 2 GFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNTLELF-PQCLCLA 60
Query: 98 PTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV-QIVVGSPGRIKQM-IKLK 155
PT E+A+Q VV +G ++ V Y I G + R QI++G+PG + K K
Sbjct: 61 PTYELALQTGRVVERMGKFCVDVQVMYAIRGNHIPRGTDVTKQIIIGTPGTVLDWCFKRK 120
Query: 156 YLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM 214
+++ +R+F++DEAD +I+T GF + I LP QML+ SAT+ ++ +
Sbjct: 121 LIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQMLLFSATFEDSVWQFAERII 180
Query: 215 VDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNY 274
DP +I+ L ++Q L C+N +Y + L + Q +IF
Sbjct: 181 PDPNVIKLRKEELTLSNIRQYYVL---CENRKDKY----QALCNIYGGITIGQAIIFCQT 233
Query: 275 QLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANV 334
+ + + + LSG R + + F+ GK ++L+TT++ ARGID V
Sbjct: 234 RRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQV 293
Query: 335 DLVINLEIPHDAA------TYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385
+V+N ++P + A TYLHR+GR GR+G +GL ++ + L + N
Sbjct: 294 TIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKIQDHFN 350
>UNIPROTKB|I3L0H8 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:25628 EMBL:AC012184 ProteinModelPortal:I3L0H8 SMR:I3L0H8
PRIDE:I3L0H8 Ensembl:ENST00000417604 Bgee:I3L0H8 Uniprot:I3L0H8
Length = 447
Score = 423 (154.0 bits), Expect = 5.3e-38, P = 5.3e-38
Identities = 124/402 (30%), Positives = 206/402 (51%)
Query: 27 LIEKPIRQGLQENGFVKE-------SPI-QMAAFPYVLNGYDAIVQSKSGTGKSIVFVVA 78
L+ K IR L +N E SP+ + +F + + I QS+SGTGK+ FV+A
Sbjct: 60 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLPQNLIAQSQSGTGKTAAFVLA 119
Query: 79 ALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-P 137
L++ ++ + PQ + L+PT E+A+Q V+ +G L + Y + G ++ER ++
Sbjct: 120 MLSR-VEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS 178
Query: 138 VQIVVGSPGRIKQMI-KLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQM 195
QIV+G+PG + KLK+++ +++F++DEAD +I T G + I LP QM
Sbjct: 179 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQM 238
Query: 196 LVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
L+ SAT+ QK + DP +I+ + L +KQ L C + ++ +
Sbjct: 239 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL---CSSRDEKF----QA 291
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L L Q +IF + + + L+ LSG + R A ++ F+ GK
Sbjct: 292 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 351
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIV 369
++LVTT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL + +V
Sbjct: 352 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 411
Query: 370 SAESLVKFHSLMGEIN-LDHAFNVGLVPDNLTGDQINWTQRV 410
++ HS M +N + FN + + L D ++ +++
Sbjct: 412 DSK-----HS-MNILNRIQEHFNKKI--ERLDTDDLDEIEKI 445
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 424 (154.3 bits), Expect = 5.4e-38, Sum P(2) = 5.4e-38
Identities = 108/365 (29%), Positives = 191/365 (52%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ + + + ++ G+ + +P+Q A P VL G D +V +++GTGK+ F + L +L
Sbjct: 8 LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67
Query: 88 V---------QQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIG---GTQVERPK 135
V +QP+ ++L PTRE+A Q+ + + +K + F G QV+
Sbjct: 68 VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127
Query: 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195
R V ++V PGR+ + +++ V + ++DEAD++++ GFV D+ + ++LP +Q
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187
Query: 196 LVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
L+ SAT+S+D + K + +P I + T P V+++ + R K+
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERI---EVTPPNTTVERIEQRV-------FRLAANHKR 237
Query: 256 --LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR 313
L L++ + Q ++F+ + + E L A + G + Q AR +L FK
Sbjct: 238 SLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKA 297
Query: 314 GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA-- 371
G VRI+V TD+AARG+D + V+N E+P+ Y+HR+GR GR G G I++V+
Sbjct: 298 GDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 372 ESLVK 376
E L+K
Sbjct: 358 EKLLK 362
Score = 63 (27.2 bits), Expect = 5.4e-38, Sum P(2) = 5.4e-38
Identities = 52/254 (20%), Positives = 93/254 (36%)
Query: 792 LFRSEDQSNSVRIGDNDGTGNRSITRSKQNSQSGDHTDLKDSNRPNANTDPSTG---KNV 848
L +S ++ +I D D G + + + D+++S D + G
Sbjct: 360 LLKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKG 419
Query: 849 KDIQSREIKSYASLSMFSPCQTTLNKFDTQYNSSDYQSDSKPYGDRTKRRSRPRKNKENT 908
KD + +E + A+ + P + K + Q S+P R P + ++
Sbjct: 420 KD-KGKEKPAAAAATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRD-- 476
Query: 909 DILNTLGQ--DKTSAH-GRTPSGGHRTPERR-RSDGVRNDTRDERNGAYTGDKGGRNRGH 964
D ++ G D S + G+ + G R + R +G G G RN G
Sbjct: 477 DEVDNFGNRADYVSPYQGKGQNRGRRPAAAPGAAPAAGGAARPANSGRPAG--GARN-GS 533
Query: 965 SVNSRKDHSFAGETPRSKGGFDSYLDQSM-DSFLDKSCREESF-LKRSHMPKRDLVVYDD 1022
+ K + PRS+ G + D L + +E + R P+ +V +
Sbjct: 534 GTGAPKRNGSGSSAPRSRDGQPRGRRPAREDQPLPREGQEPAVRAPRDGQPQPKIVHKES 593
Query: 1023 AFDMFSPAANNLDE 1036
D F P+A LD+
Sbjct: 594 KIDRF-PSAEQLDQ 606
Score = 45 (20.9 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 25/117 (21%), Positives = 45/117 (38%)
Query: 1030 AANNLDEYEIDYVEQPVDEKKSRRELSQKMDSDRYRPDSD-GDPNRRPSSQESLHHNDSL 1088
A +L ++I VE EK RE +S RP D + RR ++ +
Sbjct: 373 ADGDLMGFDITAVEA---EKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKPAA 429
Query: 1089 DIKLRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKSSDAKQAANEEENITGGN 1145
++ P + + + + S +R++ S PR + A ++E GN
Sbjct: 430 AAATGER--PARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDDEVDNFGN 484
Score = 44 (20.5 bits), Expect = 5.3e-36, Sum P(2) = 5.3e-36
Identities = 43/185 (23%), Positives = 66/185 (35%)
Query: 1799 VEGENSPTDEDEDANNSQNDGESTAQNS--QSDENSHDG-ESDSHSVKSNESHFGNSRCQ 1855
VE E E D NS+ + +N+ + D+ G E + + + E R +
Sbjct: 385 VEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKPAAAAATGERPARQPR-E 443
Query: 1856 PKTAYQSSSAQSEDGTSYKSISWDAYS-VIDEPESYDV----SWRTCSSESAAREKNSGQ 1910
K + + +SE S SI A DE +V + S + +N G+
Sbjct: 444 KKP--REGTPRSEQRASQPSIPRPAADRAPDEFRDDEVDNFGNRADYVSPYQGKGQNRGR 501
Query: 1911 RSRGS-GDKAARKSASLPASQI----ALRDGKGDFKSPRKASHSLKDGKRYGNAQSFEAA 1965
R + G A A+ PA+ R+G G R S S R G + A
Sbjct: 502 RPAAAPGAAPAAGGAARPANSGRPAGGARNGSGTGAPKRNGSGSSAPRSRDGQPRGRRPA 561
Query: 1966 RNSNP 1970
R P
Sbjct: 562 REDQP 566
Score = 42 (19.8 bits), Expect = 8.5e-36, Sum P(2) = 8.5e-36
Identities = 22/123 (17%), Positives = 42/123 (34%)
Query: 418 LDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESDSE 477
+D R D + + +P AP GA++ G +
Sbjct: 479 VDNFGNRADYVSPYQGKGQNRGRRPA-AAPGAAPAAGGAARPANSGRPAGGAR----NGS 533
Query: 478 NDGKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANSAEKSLEDK 537
G P NGS + RS++ + + + + A ED+ R+ + + + + K
Sbjct: 534 GTGAPKRNGSGSSAPRSRDGQPRGR--RPAREDQPLPREGQEPAVRAPRDGQPQPKIVHK 591
Query: 538 HGK 540
K
Sbjct: 592 ESK 594
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 422 (153.6 bits), Expect = 6.7e-38, P = 6.7e-38
Identities = 108/343 (31%), Positives = 179/343 (52%)
Query: 36 LQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTII 95
L E G++ +P+Q AA P +L G D VQ+K+G+GK+ F + L + I + Q Q ++
Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQ-IDASLFQTQALV 76
Query: 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ----IVVGSPGRIKQM 151
L PTRE+A Q+ +R + + N + GG + +Q I+V +PGR+
Sbjct: 77 LCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDH 136
Query: 152 IKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211
++ +++D++ +MDEAD++++ GF + I + P +Q L+ SAT+ A
Sbjct: 137 LQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISG 196
Query: 212 KYMVDPLLIRPE--DATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCV 269
+ DPL I + DA P+ +Q + K P L+ +LLS + CV
Sbjct: 197 RVQRDPLAIEIDSTDALPPI--EQQFYETSSKGKIPLLQ---------RLLSLHQPSSCV 245
Query: 270 IFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGI 329
+F N + + +C+ L A L G +Q+ R +L F G R+LV TD+AARG+
Sbjct: 246 VFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGL 305
Query: 330 DAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
D +++LV+N E+ D ++HR+GR R G GL I+ + E
Sbjct: 306 DIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPE 348
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 422 (153.6 bits), Expect = 6.7e-38, P = 6.7e-38
Identities = 128/466 (27%), Positives = 226/466 (48%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D ++ + ++ GF + + IQ A P + G+D I SK+G+GK++ F++ AL +L
Sbjct: 4 SDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL 63
Query: 84 IK---LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKR 136
K L + P+ +IL PTRE+A Q+ +R A+ + V +GG QV+ ++
Sbjct: 64 SKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAV-LILGGENFNDQVKVLQK 122
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK-QM 195
+ +V +PGR+ + + +++ + L I+DEAD++++ GF +++T I K Q
Sbjct: 123 EPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQT 182
Query: 196 LVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
L+ SAT H A + ++ + LL +P+ G + V + +E
Sbjct: 183 LLFSATLDH---AQVNEFATE-LLTKPKRIAINA-GHSEHVDIAKRFYLAD-NLTQKEAL 236
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L L Q +IF+ + + + + L N A LSG +Q R ++SF +G+
Sbjct: 237 LQHFLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQ 296
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV 375
+ILVTTDLA+RG+D NV VIN ++P ++HR+GR GR GT+G I++V +
Sbjct: 297 HKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWL 356
Query: 376 KFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEESS 435
++ + +F + G ++ + KP + + V A++
Sbjct: 357 SLKNVEAFLQQKISFT------KVEGIKVKFKG------LKPKKEKAVKAKVS-VAKDKK 403
Query: 436 KVENTKPLRGAPSK--EVTKKGASKEGTKWNLTDGQSEEESDSEND 479
V N KP + ++ GA K + LT Q E+ + E D
Sbjct: 404 AVSN-KPRKVIKKTFLDIEDAGAMKIIKRKKLTPDQIEDATKKEQD 448
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 422 (153.6 bits), Expect = 6.7e-38, P = 6.7e-38
Identities = 128/466 (27%), Positives = 226/466 (48%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D ++ + ++ GF + + IQ A P + G+D I SK+G+GK++ F++ AL +L
Sbjct: 4 SDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL 63
Query: 84 IK---LPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPKR 136
K L + P+ +IL PTRE+A Q+ +R A+ + V +GG QV+ ++
Sbjct: 64 SKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAV-LILGGENFNDQVKVLQK 122
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK-QM 195
+ +V +PGR+ + + +++ + L I+DEAD++++ GF +++T I K Q
Sbjct: 123 EPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQT 182
Query: 196 LVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
L+ SAT H A + ++ + LL +P+ G + V + +E
Sbjct: 183 LLFSATLDH---AQVNEFATE-LLTKPKRIAINA-GHSEHVDIAKRFYLAD-NLTQKEAL 236
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L L Q +IF+ + + + + L N A LSG +Q R ++SF +G+
Sbjct: 237 LQHFLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQ 296
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLV 375
+ILVTTDLA+RG+D NV VIN ++P ++HR+GR GR GT+G I++V +
Sbjct: 297 HKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWL 356
Query: 376 KFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQEREDVEQTAEESS 435
++ + +F + G ++ + KP + + V A++
Sbjct: 357 SLKNVEAFLQQKISFT------KVEGIKVKFKG------LKPKKEKAVKAKVS-VAKDKK 403
Query: 436 KVENTKPLRGAPSK--EVTKKGASKEGTKWNLTDGQSEEESDSEND 479
V N KP + ++ GA K + LT Q E+ + E D
Sbjct: 404 AVSN-KPRKVIKKTFLDIEDAGAMKIIKRKKLTPDQIEDATKKEQD 448
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 447 (162.4 bits), Expect = 7.6e-38, Sum P(2) = 7.6e-38
Identities = 154/556 (27%), Positives = 267/556 (48%)
Query: 9 ARTKDVLSNID-VLFENDVLIE----KPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIV 63
A K S +D V F D +E +P+ + + G+ K +PIQ A P L G D
Sbjct: 150 ATPKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
Query: 64 QSKSGTGKSIVFVVAALNKLIKLP--VQQPQTIILAPTREIAVQITDVVRSVGAHVKNLH 121
+ +G+GK+ F + L +L+ P V + +IL PTRE+AVQI +++++ A ++
Sbjct: 210 SAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL-AQFTDIK 268
Query: 122 VDYFIGGTQVERPK---RPV-QIVVGSPGR-IKQMIKLKYLNMDSVRLFIMDEADKLINT 176
+GG V + R + IVV +PGR I + +++D + + I+DEAD+L+ T
Sbjct: 269 CGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQT 328
Query: 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
GF +IT + P +Q ++ SAT + + ++ + PL + + + R G+ + V
Sbjct: 329 GFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEV 388
Query: 237 ALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLS 296
I R ++E L+ L ++T ++ +IFS + + A A L
Sbjct: 389 VRIRRT-----REANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELH 443
Query: 297 GAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRA 356
G Q RL SL+ F++ +V L+ TD+AARG+D V VIN P + +Y+HR+GR
Sbjct: 444 GNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRT 503
Query: 357 GRYGTRGLVITIV--SAESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLL 414
R G G +T V S SL+K ++ + + ++P+ + W+Q + +
Sbjct: 504 ARAGREGYAVTFVTDSDRSLLK---VIAK-KVGSKLKSRVIPEQSI---VKWSQIIDEME 556
Query: 415 AK--PLDQAQEREDVEQTAE-ESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSE 471
+ + A+ E + AE E +K EN R E+ A + T W +T+ + +
Sbjct: 557 DQYSAVISAERDERALRKAEMEFAKAENMLEHRD----EIY---ARPKRT-WFMTEKEKK 608
Query: 472 EESDSEND--GKPDENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGA-- 527
+ +E D G P G + R+++ K +EK + ++N RK + K++ A
Sbjct: 609 LVAQAEKDSAGNP-AGGELVSADRAEDLKMKEK--RKREREKNLPRKKRR---KLEAARE 662
Query: 528 ----NSAEKSLEDKHG 539
N E+ ED+ G
Sbjct: 663 MLEDNEGEEEEEDEEG 678
Score = 49 (22.3 bits), Expect = 7.6e-38, Sum P(2) = 7.6e-38
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 889 KPYGDRTKRRSRPR---KNKENTDILNT-LGQDKTSAHGRTPSGGHRTPER 935
+P D+ + RS+PR + +E D+ + +G+ K G + RT +
Sbjct: 727 RPKPDKKQSRSKPRNQPRGEEMKDLFKSDMGEKKQGRGGAAAAAKPRTKSK 777
Score = 48 (22.0 bits), Expect = 9.7e-38, Sum P(2) = 9.7e-38
Identities = 22/104 (21%), Positives = 38/104 (36%)
Query: 881 SSDYQSDSKPYGDRTKRRSR--PRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRS 938
S+D D K R + R + PRK + + + +D G R R
Sbjct: 628 SADRAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDNEGEEEEEDEEGDEKRGRSRG 687
Query: 939 DGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSFAGETPRSK 982
+ D++ G D G R +V +++ +G+ R K
Sbjct: 688 KDKKKQETDKK-GLTLKDLGYM-RAKAVKAKQRAIDSGKMERPK 729
Score = 45 (20.9 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 1802 ENSPTDEDEDANNSQNDGESTAQNSQSDENSHDG 1835
+N +E+ED + G S ++ + E G
Sbjct: 666 DNEGEEEEEDEEGDEKRGRSRGKDKKKQETDKKG 699
Score = 44 (20.5 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 24/112 (21%), Positives = 47/112 (41%)
Query: 1038 EIDYVEQPVDEKKSRRELSQKMDSDRYRPDSDG-DPNRRPSSQESLHHNDSLDIKLRKKL 1096
+++ + +++ + E + + D R S G D ++ + ++ L D L K +
Sbjct: 656 KLEAAREMLEDNEGEEE-EEDEEGDEKRGRSRGKDKKKQETDKKGLTLKD-LGYMRAKAV 713
Query: 1097 KPGHRLQRNSKKRHSKISTERSNSN--SAPR-EKSSDA-KQAANEEENITGG 1144
K R + K K ++S S + PR E+ D K E++ GG
Sbjct: 714 KAKQRAIDSGKMERPKPDKKQSRSKPRNQPRGEEMKDLFKSDMGEKKQGRGG 765
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 423 (154.0 bits), Expect = 7.9e-38, Sum P(4) = 7.9e-38
Identities = 114/364 (31%), Positives = 187/364 (51%)
Query: 19 DVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVA 78
D L +++ I I + L G K PIQ A + G D I ++++GTGK++ F +
Sbjct: 102 DGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP 161
Query: 79 ALNKLIKLPVQQ-----PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133
++K+IK + P ++LAPTRE+A Q+ R + + + Y GGT + +
Sbjct: 162 IIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICL-Y--GGTPIGQ 218
Query: 134 PKRP----VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
R V + VG+PGR+ ++K LN+ V+ ++DEAD+++ GF ED+ I +L
Sbjct: 219 QMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKL 278
Query: 190 PPMKQMLVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKNPSLR 248
P +Q ++ SAT + +KY+ +PL + D+ + L ++I + S
Sbjct: 279 PEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIAD----SYG 334
Query: 249 YVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASL 308
LV +C++F+ + + + LA + F E L G Q R +L
Sbjct: 335 RASIIGPLVT--EHAKGGKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTL 391
Query: 309 DSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITI 368
F+ G ILV TD+AARG+D NVDL+I+ E+P++ T++HR GR GR G +G I I
Sbjct: 392 AGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILI 451
Query: 369 VSAE 372
S +
Sbjct: 452 YSQD 455
Score = 58 (25.5 bits), Expect = 7.9e-38, Sum P(4) = 7.9e-38
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 920 SAHGRTPSGGHRTPERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSFAGETP 979
S G + GG R +R S G R+ G Y G GG G S S + ++G++
Sbjct: 492 SRSGGSFGGGMR--DRGSSFGGRSG-----GGGYGGSSGGYGGGRSGGS--SNRYSGDSD 542
Query: 980 RSKGGFDSYLDQSMDSF-LDKS 1000
RS GF S+ +S + + D+S
Sbjct: 543 RS--GFGSFGMRSPEGYGSDRS 562
Score = 51 (23.0 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 927 SGGHRTPERRRSDGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHS-FAGETPRSKGGF 985
S G R+PE SD R ++G + GGR+ G S N F + GG
Sbjct: 548 SFGMRSPEGYGSD------RSSQSGGRSSFGGGRSGGSSNNRSSGFGDFGSDRSSQSGGR 601
Query: 986 DSY 988
S+
Sbjct: 602 SSF 604
Score = 43 (20.2 bits), Expect = 8.2e-36, Sum P(3) = 8.2e-36
Identities = 18/71 (25%), Positives = 26/71 (36%)
Query: 1359 DDERCSHDDCGDLDYQQYEKLRGRQANTPTKTIGDTQGKRGGRVNTRSNHVNSEDKSRVH 1418
D +R G + Y R Q+ + G G+ GG N RS+ R
Sbjct: 540 DSDRSGFGSFGMRSPEGYGSDRSSQSGGRSSFGG---GRSGGSSNNRSSGFGDFGSDRSS 596
Query: 1419 TSEDRLNFKGW 1429
S R +F G+
Sbjct: 597 QSGGRSSFGGF 607
Score = 42 (19.8 bits), Expect = 7.9e-38, Sum P(4) = 7.9e-38
Identities = 13/51 (25%), Positives = 16/51 (31%)
Query: 1800 EGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFG 1850
EG S +S G S ++ D SD S S FG
Sbjct: 555 EGYGSDRSSQSGGRSSFGGGRSGGSSNNRSSGFGDFGSDRSSQSGGRSSFG 605
Score = 42 (19.8 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 1835 GESDSHSVKSNESHFGNSRCQPKTAYQSSSAQSEDGTS 1872
G S+ +S S+ S FG+ + Y S + G S
Sbjct: 532 GSSNRYSGDSDRSGFGSFGMRSPEGYGSDRSSQSGGRS 569
Score = 40 (19.1 bits), Expect = 7.9e-38, Sum P(4) = 7.9e-38
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 790 AALFRSEDQSNSVRIGDNDGTGNR 813
A L S+DQS +V+I + + G+R
Sbjct: 448 AILIYSQDQSRAVKIIERE-VGSR 470
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 421 (153.3 bits), Expect = 8.6e-38, P = 8.6e-38
Identities = 120/395 (30%), Positives = 209/395 (52%)
Query: 22 FENDVLIEKP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAAL 80
FE DV + P I +++ GF K +PIQ A+P +L G D I +++GTGK++ +++
Sbjct: 54 FE-DVFEQYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGF 112
Query: 81 NKLIKLPVQQ-----PQTIILAPTREIAVQI-TDVVRSVGAHVKNLHVDYFIGG---TQV 131
L P+ + P ++LAPTRE+A+Q+ + ++ K++ + + GG Q+
Sbjct: 113 IHLASQPIPKDKRGGPGMLVLAPTRELALQVEAECLKYTYKGFKSICI--YGGGDRKAQI 170
Query: 132 ERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191
+ V IV+ +PGR+ + ++N+ S+ ++DEAD++++ GF I I + P
Sbjct: 171 NVVTKGVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRP 230
Query: 192 MKQMLVVSATYSHDNLATLQK-YMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYV 250
+Q +++SAT+ D + L K Y+ +P+++ +G L L+Y+
Sbjct: 231 DRQTVMMSATWP-DGVRRLAKSYLRNPMIV--------YVGTLDLAV-----SGVVLKYL 276
Query: 251 DEEK-----KLVQLLSQTPFNQCVI-FSNYQLRPEVICENLANANFGAEYLSGAQDQKAR 304
+K K +Q+ +Q+ V+ F + + I +L + L G ++Q R
Sbjct: 277 QFDKDIFTWKYMQVNAQSFCTDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDR 336
Query: 305 LASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGL 364
+LD FK+GKVRILV TDLA+RG+D ++ V N + P + Y+HR+GR GR G G
Sbjct: 337 EQALDDFKKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGK 396
Query: 365 VITIVSAESLVKFHSLMGEINLDHAFNVGLVPDNL 399
+T+++ + K S + +I L A V VPD L
Sbjct: 397 AVTLITKKDW-KAASELIDI-LQRAKQV--VPDEL 427
>ZFIN|ZDB-GENE-080721-12 [details] [associations]
symbol:zgc:193690 "zgc:193690" species:7955 "Danio
rerio" [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-080721-12 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
EMBL:CR846089 IPI:IPI00928637 ProteinModelPortal:F1Q5T4
Ensembl:ENSDART00000134461 ArrayExpress:F1Q5T4 Bgee:F1Q5T4
Uniprot:F1Q5T4
Length = 492
Score = 421 (153.3 bits), Expect = 8.6e-38, P = 8.6e-38
Identities = 114/362 (31%), Positives = 189/362 (52%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++ + +G+ E GF + S IQ A P +L + I QS+SGTGK+ FV+A
Sbjct: 86 FE-ELRLKPQLLKGVYEMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 144
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR-PV 138
L+ + + Q + ++PT E+A+Q V+ +G + + Y + G ++ER R
Sbjct: 145 LSH-VDPACKWSQCLCISPTYELALQTGKVIEQMGKFYPEVTLAYAVRGHRMERGVRIKD 203
Query: 139 QIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQML 196
QIV+G+PG + IKLK ++ +++F++DEAD +I T G + I LP QML
Sbjct: 204 QIVIGTPGTVLDWCIKLKLIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKGCQML 263
Query: 197 VVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKL 256
+ SAT+ ++ + DP +I+ + L +KQ L C + D+ L
Sbjct: 264 LFSATFEDSVWKFAERVVPDPNIIKLKREEETLDTIKQYYVL---CNSKE----DKFNAL 316
Query: 257 VQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKV 316
+ Q +IF + + + ++ LSG + R A ++ F+ GK
Sbjct: 317 CNIYGAITIAQAMIFCHTRKMANWLAGQMSKEGHQVALLSGEMVVEQRAAVIERFRDGKE 376
Query: 317 RILVTTDLAARGIDAANVDLVINLEIPHDA------ATYLHRMGRAGRYGTRGLVITIVS 370
++L+TT++ ARGID V +VIN ++P D TYLHR+GR GR+G RGL I +V
Sbjct: 377 KVLITTNVCARGIDVEQVSVVINFDLPLDKDSNPDNETYLHRIGRTGRFGKRGLAINMVD 436
Query: 371 AE 372
++
Sbjct: 437 SQ 438
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 385 (140.6 bits), Expect = 9.1e-38, Sum P(2) = 9.1e-38
Identities = 108/377 (28%), Positives = 195/377 (51%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLP 87
+ + + + + G+ S IQ A P+ L G D I +++G+GK+ F + L L++
Sbjct: 16 VREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYV 75
Query: 88 VQ-QPQ----------TIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQ-----V 131
+P+ +L+PTRE+A+QI + ++GA + +L +GG +
Sbjct: 76 YDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADI-SLRCAVLVGGIDRMQQTI 134
Query: 132 ERPKRPVQIVVGSPGRI-KQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLP 190
KRP ++V +PGR+ M K ++ S++ ++DEAD+L+N F + + I ++P
Sbjct: 135 ALGKRP-HVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIP 193
Query: 191 PMKQMLVVSATYSHDNLATLQKYMV-DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRY 249
++ + SAT + + LQ+ + +P+ I + +KQ + + +Y
Sbjct: 194 LERKTFLFSATMTK-KVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFV------AAKY 246
Query: 250 VDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLD 309
D LV +LS+ P + +IF+ + L + F A +SG Q RL +L+
Sbjct: 247 KD--CYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALN 304
Query: 310 SFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIV 369
FK G+ ILV TD+A+RG+D +VD+VIN +IP ++ Y+HR+GR R G G+ I++V
Sbjct: 305 KFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLV 364
Query: 370 SAESL---VKFHSLMGE 383
+ L ++ L+G+
Sbjct: 365 NQYELEWYIQIEKLIGK 381
Score = 68 (29.0 bits), Expect = 9.1e-38, Sum P(2) = 9.1e-38
Identities = 25/96 (26%), Positives = 38/96 (39%)
Query: 403 QINWTQRVQTLLAKPLDQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTK 462
++ W +++ L+ K L + ED + E +V K L KE G + G
Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLE--RVAEAKKLSAMNMKE--SGGRKRRGED 423
Query: 463 WNLTDGQSEEESDSENDGKPDENGSQRGSKRSKEFK 498
D +SE D E G + K SK+FK
Sbjct: 424 ----DEESERFLGGNKDRGNKERGGNKDKKSSKKFK 455
Score = 52 (23.4 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 26/98 (26%), Positives = 36/98 (36%)
Query: 878 QYNSSDYQSDSKPYGDRTKRRSRPRKNKENTDILNTLGQ-DKTSAHGRTPSGGHRTPERR 936
QY Y K G K P + E +L + + K SA SGG + RR
Sbjct: 366 QYELEWYIQIEKLIGK--KLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRK---RR 420
Query: 937 RSDGVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHSF 974
D D ER D+G + RG + + + F
Sbjct: 421 GED----DEESERFLGGNKDRGNKERGGNKDKKSSKKF 454
Score = 38 (18.4 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 484 ENGSQRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQ 522
E+G ++ +R ++ + E+ + G + N +R +KD++
Sbjct: 413 ESGGRK--RRGEDDEESERFLGGNKDRGNKERGGNKDKK 449
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 434 (157.8 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 106/353 (30%), Positives = 197/353 (55%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ- 90
+ + +++ GF K +PIQ A+P VL G D I +++GTGK++ +++ L PV +
Sbjct: 226 LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRG 285
Query: 91 ----PQTIILAPTREIAVQI-TDVVRSVGAHVKNLHVDYFIGGT---QVERPKRPVQIVV 142
P ++L PTRE+A+Q+ + + +K++ + + GG Q++ + V I++
Sbjct: 286 KRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCI--YGGGNRKGQIQDIMKGVDIII 343
Query: 143 GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202
+PGR+ + ++N+ S+ ++DEADK+++ GF I I + P +Q ++ SAT+
Sbjct: 344 ATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATW 403
Query: 203 SHDNLATL-QKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ--L 259
D + L Y+ +P+L+ +G LVA+ +N + +E++ L Q L
Sbjct: 404 P-DTIRQLAHSYLKEPMLV--------YVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFL 454
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
S +P ++ ++F + +L + + +L+ + L G ++Q R +LD FK GKV+IL
Sbjct: 455 QSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKIL 514
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
+ TDLA+RG+D ++V V N P + Y+HR+GR GR G G +T+++ +
Sbjct: 515 IATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQD 567
>UNIPROTKB|H9KYU4 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007286
"spermatid development" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 OMA:WHFAERI EMBL:AADN02053079
Ensembl:ENSGALT00000000632 Uniprot:H9KYU4
Length = 416
Score = 419 (152.6 bits), Expect = 1.4e-37, P = 1.4e-37
Identities = 115/364 (31%), Positives = 185/364 (50%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNG--YDAIVQSKSGTGKSIVFVVAA 79
FE ++ ++K + QG+ GF + S IQ A P ++ + I QS+SGTGK+ FV+A
Sbjct: 32 FE-ELHLKKELLQGVYTMGFNRPSKIQANALPILMAHPPQNLIAQSQSGTGKTAAFVLAM 90
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPV- 138
L++ +K + PQ + LAPT E+A+QI V +G ++ V Y + G +V P +
Sbjct: 91 LSR-VKGAERYPQCLCLAPTYELALQIGHVAEKMGRFCNDIRVTYAVQGNRVS-PGTVLE 148
Query: 139 -QIVVGSPGRIKQM-IKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQM 195
QIV+G+PG + K + LNM + +F++DEAD +I+T GF I LP QM
Sbjct: 149 EQIVIGTPGTMLDWCFKRRLLNMRRICMFVLDEADVMIDTQGFSSQSIRIQRALPKDCQM 208
Query: 196 LVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
L+ SAT+ + + P++I+ L ++Q + C+N +Y +
Sbjct: 209 LLFSATFKETLWKFALQIVSRPIIIKLRQEELTLTNIRQYYFV---CRNWEQKY----EA 261
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L L Q +IF + + + + L+ R + F+ GK
Sbjct: 262 LCNLYGSITIGQAMIFCQTRRSADWLSVKMIQDGHQVAMLTAELSIVQRADVIQRFRDGK 321
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIP------HDAATYLHRMGRAGRYGTRGLVITIV 369
++L+TT++ ARGID A V +V+N +P D TYLHR+GR GR+G RG+ +V
Sbjct: 322 EKVLITTNVCARGIDVAQVTIVVNFGLPINRQKQPDFETYLHRIGRTGRFGKRGIAFNMV 381
Query: 370 SAES 373
+ S
Sbjct: 382 DSHS 385
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 419 (152.6 bits), Expect = 1.4e-37, P = 1.4e-37
Identities = 112/376 (29%), Positives = 190/376 (50%)
Query: 28 IEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI--- 84
+ PI + + G+ K + IQ A P VL G D I +++GTGK+ FV+ L +L
Sbjct: 8 LSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQY 67
Query: 85 -----KLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFI--GGTQVERPKRP 137
KL ++ + +IL PTRE+AVQ+ S+ + K L + GG + K+
Sbjct: 68 KETGKKLRAKRIRALILVPTRELAVQVE---ASISQYAKYLDISSMAMYGGVDAQEQKQR 124
Query: 138 ----VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193
V I+V +PGR+ M + L+ D + + ++DEAD++++ GF++DI I +LP +
Sbjct: 125 LIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHR 184
Query: 194 QMLVVSATYSHDNLATLQKYMVDP--LLIRPEDATRPLLGVKQLVALIPECKNPSLRYVD 251
Q L+ SAT S + ++ + P + I + A++P ++Q + + + +L
Sbjct: 185 QNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPK--IEQWLVTVDKANKSAL---- 238
Query: 252 EEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSF 311
L +++ + Q +IF + + L AE + + Q R L+ F
Sbjct: 239 ----LSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDF 294
Query: 312 KRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSA 371
K GK++ LV T +AARG+D + VIN ++P Y+HR+GR GR G G I++VS
Sbjct: 295 KSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSK 354
Query: 372 ES---LVKFHSLMGEI 384
++ L S +G I
Sbjct: 355 DNFRELCAIESRLGHI 370
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 434 (157.8 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 106/353 (30%), Positives = 197/353 (55%)
Query: 32 IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQ- 90
+ + +++ GF K +PIQ A+P VL G D I +++GTGK++ +++ L PV +
Sbjct: 235 LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRG 294
Query: 91 ----PQTIILAPTREIAVQI-TDVVRSVGAHVKNLHVDYFIGGT---QVERPKRPVQIVV 142
P ++L PTRE+A+Q+ + + +K++ + + GG Q++ + V I++
Sbjct: 295 KRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCI--YGGGNRKGQIQDIMKGVDIII 352
Query: 143 GSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATY 202
+PGR+ + ++N+ S+ ++DEADK+++ GF I I + P +Q ++ SAT+
Sbjct: 353 ATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATW 412
Query: 203 SHDNLATL-QKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ--L 259
D + L Y+ +P+L+ +G LVA+ +N + +E++ L Q L
Sbjct: 413 P-DTIRQLAHSYLKEPMLV--------YVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFL 463
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
S +P ++ ++F + +L + + +L+ + L G ++Q R +LD FK GKV+IL
Sbjct: 464 QSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKIL 523
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
+ TDLA+RG+D ++V V N P + Y+HR+GR GR G G +T+++ +
Sbjct: 524 IATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQD 576
>UNIPROTKB|H0Y7G4 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CT009531
Ensembl:ENST00000420337 Ensembl:ENST00000426766
Ensembl:ENST00000448800 Uniprot:H0Y7G4
Length = 328
Score = 417 (151.9 bits), Expect = 2.3e-37, P = 2.3e-37
Identities = 106/321 (33%), Positives = 171/321 (53%)
Query: 87 PVQ-QPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-----I 140
PV Q +++ TRE+A QI+ ++ N+ V F GG +++ + ++ I
Sbjct: 9 PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 68
Query: 141 VVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT-GFVEDITWIYSQLPPMKQMLVVS 199
VVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+++ S
Sbjct: 69 VVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 128
Query: 200 ATYSHDNLATLQKYMVDPLLIRPEDATRPLL-GVKQLVALIPECKNPSLRYVDEEKKLVQ 258
AT S + +K+M DP+ I +D T+ L G++Q + + N ++ +KL
Sbjct: 129 ATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD--N------EKNRKLFD 180
Query: 259 LLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRI 318
LL FNQ VIF R + + L NF A + Q+ RL+ FK + RI
Sbjct: 181 LLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 240
Query: 319 LVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFH 378
LV T+L RG+D V++ N ++P D+ TYLHR+ RAGR+GT+GL IT VS E+ K
Sbjct: 241 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK-- 298
Query: 379 SLMGEINLDHAFNVGLVPDNL 399
++ ++ N+ +PD +
Sbjct: 299 -ILNDVQDRFEVNISELPDEI 318
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 398 (145.2 bits), Expect = 2.4e-37, Sum P(3) = 2.4e-37
Identities = 106/359 (29%), Positives = 184/359 (51%)
Query: 24 NDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKL 83
+D+L++ +Q ++ +PIQ A P L+G D I +K+G+GK+ F+ +++ +
Sbjct: 313 DDILLQAIAKQSIET-----PTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHI 367
Query: 84 IKLPVQQ----PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT----QVERPK 135
+ P + P + LAPTRE+A QI + K L GG Q + K
Sbjct: 368 MDQPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFK-LKTTVLYGGVSKQQQCKELK 426
Query: 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195
+I+V +PGR+ MIKLK ++ V ++DEADK+ + GF + I + + P +Q
Sbjct: 427 AGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQT 486
Query: 196 LVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKK 255
L+ SAT+ + + + DP+ I + Q+V ++ K+ S ++ +
Sbjct: 487 LLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVL---KSDSDKWNWLTNQ 543
Query: 256 LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGK 315
L LLSQ +IF + ++ E + NL F L G ++Q R ++ +FK GK
Sbjct: 544 LALLLSQ---GSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGK 600
Query: 316 VRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
+ IL+ TD+AARG+D + V+N + D ++ HR+GR GR G G+ T+++ + +
Sbjct: 601 INILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDI 659
Score = 95 (38.5 bits), Expect = 2.4e-37, Sum P(3) = 2.4e-37
Identities = 43/213 (20%), Positives = 77/213 (36%)
Query: 509 EDENGDRKASKDEQKIDGANSAEKSLEDKHGKKI-TNSFEAVGEIVQNDTETTKENNQTD 567
E N + K+ +E K NS S D++ NSF N + N+ ++
Sbjct: 761 EINNENEKSINNENKFSNNNSG--SSNDRNSINYRNNSFNNNSNNTNNSGNSNFNNSNSN 818
Query: 568 EVPEENGLVGNPNKAEVGDLNECESCTDSFHMNEHSDENDLGNNTKESQXXXXXXXXXXX 627
N N N + N + +S++ N +S+ N+ N S
Sbjct: 819 NGYSNNNY--NNNYKNNSNYNNSNNNNNSYYNNNNSNNNNNSNYNNSSNNNNNNNNNYRN 876
Query: 628 XXXXXXXXXXXXPQGNNANQREIRDNSATLDKTEKESVNNVESKDERPPSTANNPDGTEW 687
NN+N +N++ + + NN + + NN D + +
Sbjct: 877 GNNNNNYNNNNYYNNNNSNNNSSNNNNSNNNSSNNNFNNNFNNNN-------NNNDNSNF 929
Query: 688 EDIPSDTIP-NDETSNDNKLTPVDFDYINDFVN 719
+ +P ND +N+N +F+Y N+F N
Sbjct: 930 ----NRALPFNDFNNNNNNSNNNNFNYNNNFNN 958
Score = 84 (34.6 bits), Expect = 3.4e-36, Sum P(3) = 3.4e-36
Identities = 41/220 (18%), Positives = 82/220 (37%)
Query: 505 KGAGEDENGDRKASKDEQKIDGANSAEKSLEDKHGKKI-TNSFEAVGEIVQ-NDTETTKE 562
+G G G R+ S+ +N + S D K I S E G + N+T+ ++
Sbjct: 705 RGRGGGGVGYRRNSRGGGVAFNSNR-DSSRSDSQNKFIPAQSVEG-GRLFNPNNTDNSEI 762
Query: 563 NNQTDEVPEENGLVGNPNKAEVGDLNECESCTDSFHMNEHSDENDLGNNTKESQXXXXXX 622
NN+ ++ N N D N +SF+ N ++ N +N S
Sbjct: 763 NNENEKSINNENKFSNNNSGSSNDRNSINYRNNSFNNNSNNTNNSGNSNFNNSNSNNGYS 822
Query: 623 XXXXXXXXXXXXXXXXXPQGNNA---NQREIRDNSATLDKTEKESVNNVESKDERPPSTA 679
NN+ N +N++ + + + NN + + R +
Sbjct: 823 NNNYNNNYKNNSNYNNSNNNNNSYYNNNNSNNNNNSNYNNSSNNNNNN--NNNYRNGNNN 880
Query: 680 NNPDGTEWEDIPSDTIPNDETSNDNKLTPVDFDYINDFVN 719
NN + + + +++ N +N++ + ++ N+F N
Sbjct: 881 NNYNNNNYYN-NNNSNNNSSNNNNSNNNSSNNNFNNNFNN 919
Score = 79 (32.9 bits), Expect = 1.3e-33, Sum P(4) = 1.3e-33
Identities = 25/124 (20%), Positives = 58/124 (46%)
Query: 1794 DSEVDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNSR 1853
+SE++ E E S +E++ +NN N G S +NS + N+ + +++ S S+F NS
Sbjct: 759 NSEINNENEKSINNENKFSNN--NSGSSNDRNSINYRNNSFNNNSNNTNNSGNSNFNNSN 816
Query: 1854 CQPKTAYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWRTCSSESAAREKNSGQRSR 1913
+ + + ++ ++Y + + + S + S + + ++ S N+
Sbjct: 817 SNNGYSNNNYNNNYKNNSNYNNSNNNNNSYYNNNNSNNNNNSNYNNSSNNNNNNNNNYRN 876
Query: 1914 GSGD 1917
G+ +
Sbjct: 877 GNNN 880
Score = 74 (31.1 bits), Expect = 4.4e-33, Sum P(4) = 4.4e-33
Identities = 23/116 (19%), Positives = 50/116 (43%)
Query: 1737 FDPKRLHSKESSHKRNRKANDFNDTCGAVANETFXXXXXXXXXXXXNNLIVTLSEAGDSE 1796
F+P + E +++ + N+ N + + NN + +G+S
Sbjct: 752 FNPNNTDNSEINNENEKSINNENKFSNNNSGSSNDRNSINYRNNSFNNNSNNTNNSGNSN 811
Query: 1797 VDVEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNS 1852
+ N+ + NN +N+ S NS ++ NS+ ++S++ +N S++ NS
Sbjct: 812 FNNSNSNNGYSNNNYNNNYKNN--SNYNNSNNNNNSYYNNNNSNN--NNNSNYNNS 863
Score = 67 (28.6 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 31/197 (15%), Positives = 75/197 (38%)
Query: 784 NKHNNVAALFRSEDQSNSVRIGDNDGTGNRSITRSKQNSQSGDHTD--LKDSNRPNANTD 841
N N++ +R+ +N+ +N G N + + S + ++ + +SN N+N +
Sbjct: 785 NDRNSIN--YRNNSFNNNSNNTNNSGNSNFNNSNSNNGYSNNNYNNNYKNNSNYNNSNNN 842
Query: 842 PSTGKNVKDIQSREIKSYASLSMFSPCQTTLNKFDTQYNSSDYQSDSKPYGDRTKRRSRP 901
++ N + + +Y + S + N + N+++Y +++ + + S
Sbjct: 843 NNSYYNNNNSNNNNNSNYNNSSNNN--NNNNNNYRNGNNNNNYNNNNYYNNNNSNNNSSN 900
Query: 902 RKNKENTDILNTLGQD-KTSAHGRTPSGGHRT-P--ERRRSDGVRNDTRDERNGAYTGDK 957
N N N + + + S +R P + ++ N+ N +
Sbjct: 901 NNNSNNNSSNNNFNNNFNNNNNNNDNSNFNRALPFNDFNNNNNNSNNNNFNYNNNFNNSY 960
Query: 958 GGRNRGHSVNSRKDHSF 974
N H N+ ++F
Sbjct: 961 NANNSNHYKNNNNSNNF 977
Score = 66 (28.3 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 18/143 (12%), Positives = 58/143 (40%)
Query: 1734 QSEFDPKRLHSKESSHKRNRKANDFNDTCGAVANETFXXXXXXXXXXXXNNLIVTLSEAG 1793
+++F S + N + N FN+ N +N +
Sbjct: 773 ENKFSNNNSGSSNDRNSINYRNNSFNNNSNNTNNSGNSNFNNSNSNNGYSNNNYNNNYKN 832
Query: 1794 DSEVDVEGENSPTD-EDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNS 1852
+S + N+ + + ++NN+ N + + N+ ++ N++ ++++ +N +++ N+
Sbjct: 833 NSNYNNSNNNNNSYYNNNNSNNNNNSNYNNSSNNNNNNNNNYRNGNNNNNYNNNNYYNNN 892
Query: 1853 RCQPKTAYQSSSAQSEDGTSYKS 1875
++ ++S + ++ +
Sbjct: 893 NSNNNSSNNNNSNNNSSNNNFNN 915
Score = 65 (27.9 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 25/154 (16%), Positives = 61/154 (39%)
Query: 821 NSQSGDHTDLKDSNRPNANTDPS-TGKNVKDIQSREIKSYASLSMFSPCQTTLNKFDTQY 879
N + D++++ + N + N + + N R +Y + S + T N ++ +
Sbjct: 753 NPNNTDNSEINNENEKSINNENKFSNNNSGSSNDRNSINYRNNSFNNNSNNTNNSGNSNF 812
Query: 880 NSSDYQSDSKPYGDRTKRRSRPRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERRRSD 939
N+S+ + Y + + K N++ N+ + + + + + + S+
Sbjct: 813 NNSN---SNNGYSNNNYNNNY----KNNSNYNNSNNNNNSYYNNNNSNNNNNSNYNNSSN 865
Query: 940 GVRNDTRDERNGAYTGDKGGRNRGHSVNSRKDHS 973
N+ + RNG + N ++ NS + S
Sbjct: 866 NNNNNNNNYRNGNNNNNYNNNNYYNNNNSNNNSS 899
Score = 65 (27.9 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 25/156 (16%), Positives = 58/156 (37%)
Query: 795 SEDQSNSVRIGDNDGTGNRSITRSKQNSQSGDHTDLKDSNRPNANTDPSTGKNVKDIQSR 854
S + S S ++ N S + N+ + +++ +SN N ++ + N K+ +
Sbjct: 777 SNNNSGSSNDRNSINYRNNSFNNNSNNTNNSGNSNFNNSNSNNGYSNNNYNNNYKNNSNY 836
Query: 855 EIKSYASLSMFSPCQTTLNKFDTQYNSSDYQSDSKPYGDRTKRRSRPRKNKENTDILNTL 914
+ + S ++ + N ++ YN+S S++ + R N N + N
Sbjct: 837 NNSNNNNNSYYNNNNSNNNN-NSNYNNS---SNNNNNNNNNYRNGNNNNNYNNNNYYNNN 892
Query: 915 GQDKTSAHGRTPSGGHRTPERRRSDGVRNDTRDERN 950
+ S++ + + N+ D N
Sbjct: 893 NSNNNSSNNNNSNNNSSNNNFNNNFNNNNNNNDNSN 928
Score = 65 (27.9 bits), Expect = 3.7e-32, Sum P(4) = 3.7e-32
Identities = 17/82 (20%), Positives = 33/82 (40%)
Query: 1799 VEGENSPTDEDEDANNSQNDGESTAQNSQSDENSHDGES-DSHSVKSNESHFGNSRCQPK 1857
VEG + D + N+ E + N N++ G S D +S+ + F N+
Sbjct: 746 VEGGRLFNPNNTDNSEINNENEKSINNENKFSNNNSGSSNDRNSINYRNNSFNNNSNNTN 805
Query: 1858 TAYQSSSAQSEDGTSYKSISWD 1879
+ S+ S Y + +++
Sbjct: 806 NSGNSNFNNSNSNNGYSNNNYN 827
Score = 59 (25.8 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 43/205 (20%), Positives = 80/205 (39%)
Query: 955 GDKGGRNRGHSVNSRKDHSFAGETPRSKGGFDSYLDQSMDSFLDKSCREESFLKRSHMPK 1014
G GG NRG + G S+GG ++ + + DS +S + F+ P
Sbjct: 696 GGGGGSNRGRG----RGGGGVGYRRNSRGGGVAF-NSNRDS--SRSDSQNKFI-----PA 743
Query: 1015 RDLVVYDDAFDMFSPAANNLDEYEIDYV-EQPVDEKKSRRELSQKMDSDR----YRPDS- 1068
+ + + +F+P NN D EI+ E+ ++ + + +DR YR +S
Sbjct: 744 QSV----EGGRLFNP--NNTDNSEINNENEKSINNENKFSNNNSGSSNDRNSINYRNNSF 797
Query: 1069 DGDPNRRPSSQESLHHNDSLDI-----KLRKKLKPGHRLQRNSKKRHSKISTERSNSNSA 1123
+ + N +S S +N + + K ++ +S + SN+N+
Sbjct: 798 NNNSNNTNNSGNSNFNNSNSNNGYSNNNYNNNYKNNSNYNNSNNNNNSYYNNNNSNNNNN 857
Query: 1124 PREKSSDAKQAANEEENITGGNDEN 1148
+S + N N GN+ N
Sbjct: 858 SNYNNS-SNNNNNNNNNYRNGNNNN 881
Score = 58 (25.5 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 38/204 (18%), Positives = 82/204 (40%)
Query: 950 NGAYTGDKGGRNRGHSVNSRKDHSFAGETPRSKGGFDSYLDQSMDSFLDKSCREESFLKR 1009
N + ++GG G + + G S+GG ++ + + DS +S + F+
Sbjct: 687 NPHFKRERGGGGGGSNRGRGRGGGGVGYRRNSRGGGVAF-NSNRDS--SRSDSQNKFI-- 741
Query: 1010 SHMPKRDLVVYDDAFDMFSPAANNLDEYEIDYV-EQPVDEKKSRRELSQKMDSDR----Y 1064
P + + + +F+P NN D EI+ E+ ++ + + +DR Y
Sbjct: 742 ---PAQSV----EGGRLFNP--NNTDNSEINNENEKSINNENKFSNNNSGSSNDRNSINY 792
Query: 1065 RPDSDGDPNRRPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSKISTERSNSNSAP 1124
R +S + + ++ + + N+S + N+ K +S + +N+NS
Sbjct: 793 RNNSFNNNSNNTNNSGNSNFNNS-----NSNNGYSNNNYNNNYKNNSNYNNSNNNNNSYY 847
Query: 1125 REKSSDAKQAANEEENITGGNDEN 1148
+S+ +N + N+ N
Sbjct: 848 NNNNSNNNNNSNYNNSSNNNNNNN 871
Score = 57 (25.1 bits), Expect = 2.4e-37, Sum P(3) = 2.4e-37
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 1811 DANNSQNDGESTAQNSQSD-ENSHDGESDSHSVKSNESHFGNSRCQ 1855
D NN+ N+ + N ++ NS++ + +H +N S+ N R Q
Sbjct: 937 DFNNNNNNSNNNNFNYNNNFNNSYNANNSNHYKNNNNSNNFNQRSQ 982
Score = 53 (23.7 bits), Expect = 8.3e-34, Sum P(3) = 8.3e-34
Identities = 12/71 (16%), Positives = 37/71 (52%)
Query: 1813 NNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNSRCQPKTAYQSSSAQSEDGT- 1871
NN+ N+ S NS ++ ++++ ++ ++ +N + +R P + +++ S +
Sbjct: 891 NNNSNNNSSNNNNSNNNSSNNNFNNNFNNNNNNNDNSNFNRALPFNDFNNNNNNSNNNNF 950
Query: 1872 SYKSISWDAYS 1882
+Y + ++Y+
Sbjct: 951 NYNNNFNNSYN 961
Score = 53 (23.7 bits), Expect = 3.5e-33, Sum P(3) = 3.5e-33
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 1803 NSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNS 1852
N+ + + NN+ N + N+ + N+ ++S++ SN ++F N+
Sbjct: 868 NNNNNNYRNGNNNNNYNNNNYYNNNNSNNNSSNNNNSNNNSSN-NNFNNN 916
Score = 52 (23.4 bits), Expect = 7.1e-33, Sum P(3) = 7.1e-33
Identities = 28/184 (15%), Positives = 57/184 (30%)
Query: 433 ESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTDGQSEEESD-SENDGKPDENGSQRGS 491
E ++ N + +K + E N G S + + + + + N + +
Sbjct: 747 EGGRLFNPNNTDNSEINNENEKSINNENKFSNNNSGSSNDRNSINYRNNSFNNNSNNTNN 806
Query: 492 KRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANSAEKSLEDKHGKKITNSFEAVGE 551
+ F G N K+ + +N+ S + + N+
Sbjct: 807 SGNSNFNNSNS---NNGYSNNNYNNNYKNNSNYNNSNNNNNSYYNNNNSNNNNNSNYNNS 863
Query: 552 IVQNDTETTKENNQTDEVPEENGLVGNPNKAEVGDLNECESCTDSFHMNEHSDENDLGNN 611
N+ N + N N N + N S +S + N +++ N+ NN
Sbjct: 864 SNNNNNNNNNYRNGNNNNNYNNNNYYNNNNSNNNSSNNNNSNNNSSNNNFNNNFNNNNNN 923
Query: 612 TKES 615
S
Sbjct: 924 NDNS 927
Score = 51 (23.0 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 30/194 (15%), Positives = 77/194 (39%)
Query: 1268 EENFSKLDLSSYHDEHAVFLPNSSSEDDCDGLSHGDEANGLASEDADEYSGSSLNSSCID 1327
E FS + S +D +++ N+S ++ + ++ +N S + YS ++ N++ +
Sbjct: 773 ENKFSNNNSGSSNDRNSINYRNNSFNNNSNNTNNSGNSNFNNSNSNNGYSNNNYNNNYKN 832
Query: 1328 -LNCDHLEND----FSXXXXXXXXXXTYVTDEYHECDDERCSHDDCGDLDYQQYEKLRGR 1382
N ++ N+ ++ Y + ++ + + +Y
Sbjct: 833 NSNYNNSNNNNNSYYNNNNSNNNNNSNYNNSSNNNNNNNNNYRNGNNNNNYNNNNYYNNN 892
Query: 1383 QANTPTKTIGDTQGKRGGRVNTRSNHVNSEDKSRVHTSEDR-LNFKGWIREMELYNVSTN 1441
+N + ++ N +N+ N+ + + +++ +R L F + N S N
Sbjct: 893 NSNNNSSNNNNSNNNSSN--NNFNNNFNNNNNNNDNSNFNRALPFNDFNNNN---NNSNN 947
Query: 1442 VNVSDDDGLDESYN 1455
N + ++ + SYN
Sbjct: 948 NNFNYNNNFNNSYN 961
Score = 50 (22.7 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 16/89 (17%), Positives = 39/89 (43%)
Query: 1060 DSDRYRPDSDGDPNRRPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSKISTERSN 1119
+++ Y +++ + N + S ++N++ + R G+ N+ ++ + SN
Sbjct: 842 NNNSYYNNNNSNNNNNSNYNNSSNNNNNNNNNYRN----GNN--NNNYNNNNYYNNNNSN 895
Query: 1120 SNSAPREKSSDAKQAANEEENITGGNDEN 1148
+NS+ S++ N N N+ N
Sbjct: 896 NNSSNNNNSNNNSSNNNFNNNFNNNNNNN 924
Score = 49 (22.3 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 22/127 (17%), Positives = 39/127 (30%)
Query: 1398 RGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVSTNVNVSDDDGLDESY--- 1454
R N SN+ N+ S + S G+ N N N ++ + + SY
Sbjct: 793 RNNSFNNNSNNTNNSGNSNFNNSNSN---NGYSNNNYNNNYKNNSNYNNSNNNNNSYYNN 849
Query: 1455 NMIKTPTPRKRNGASGESSVEREDVGGGKSXXXXXXXXXXMNKQNEVNLWHRENQGWNQK 1514
N N +S ++ + G + N + N + N N
Sbjct: 850 NNSNNNNNSNYNNSSNNNNNNNNNYRNGNNNNNYNNNNYYNNNNSNNNSSNNNNSNNNSS 909
Query: 1515 AQGWNEH 1521
+N +
Sbjct: 910 NNNFNNN 916
Score = 48 (22.0 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 17/121 (14%), Positives = 45/121 (37%)
Query: 1403 NTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVSTNVNVSDDDGLDESYNMIKTPTP 1462
N+ +N+ N+ + R + + N + N S+N N S+++ + ++N
Sbjct: 862 NSSNNNNNNNNNYRNGNNNNNYNNNNYYNNNNSNNNSSNNNNSNNNSSNNNFNNNFNNNN 921
Query: 1463 RKRNGASGESSVEREDVGGGKSXXXXXXXXXXMNKQNEVNLWHRENQGWNQKAQGWNEHT 1522
+ ++ ++ D + N N N + + N + +N+ +
Sbjct: 922 NNNDNSNFNRALPFNDFNNNNNNSNNNNFNYNNNFNNSYNANNSNHYKNNNNSNNFNQRS 981
Query: 1523 E 1523
+
Sbjct: 982 Q 982
Score = 48 (22.0 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 30/159 (18%), Positives = 57/159 (35%)
Query: 1391 IGDTQGKRGGRVNTRSNHVNSEDKSRVHTSEDRLNFKGWIREMELYNVSTNVNVSDDDGL 1450
+G + RGG V SN D SR S+++ + L+N + N ++
Sbjct: 712 VGYRRNSRGGGVAFNSNR----DSSR-SDSQNKFIPAQSVEGGRLFNPNNTDNSEINNEN 766
Query: 1451 DESYNMIKTPTPRKRNGASGE-SSVE-REDVGGGKSXXXXXXXXXXMNKQNEVNLWHREN 1508
++S N + +G+S + +S+ R + S N N N + N
Sbjct: 767 EKSINN-ENKFSNNNSGSSNDRNSINYRNNSFNNNSNNTNNSGNSNFNNSNSNNGY--SN 823
Query: 1509 QGWNQKAQGWNEHTEVQTGLNQGWHQKTQGWNEHSELQN 1547
+N + + + N ++ N +S N
Sbjct: 824 NNYNNNYKNNSNYNNSNNNNNSYYNNNNSNNNNNSNYNN 862
Score = 47 (21.6 bits), Expect = 1.3e-33, Sum P(4) = 1.3e-33
Identities = 13/70 (18%), Positives = 29/70 (41%)
Query: 2212 SHYRENTNSFRYLDNRVCGHKDAKSRYQGNQIRGHIKDAKPCFHGNLNETDLTYDRLSSD 2271
++YR N+ Y +N + ++ + N + + F+ N N + D +S+
Sbjct: 872 NNYRNGNNNNNYNNNNYYNNNNSNNNSSNNN-NSNNNSSNNNFNNNFNNNNNNND--NSN 928
Query: 2272 YDSTFSCGDF 2281
++ DF
Sbjct: 929 FNRALPFNDF 938
Score = 47 (21.6 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 1803 NSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNS 1852
N + + + NN N+ S N+ S+ N+ + S +++ +N ++ N+
Sbjct: 876 NGNNNNNYNNNNYYNNNNSN--NNSSNNNNSNNNSSNNNFNNNFNNNNNN 923
Score = 46 (21.3 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 9/50 (18%), Positives = 25/50 (50%)
Query: 1803 NSPTDEDEDANNSQNDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNS 1852
N+ + + NNS N+ + N+ + N+++ ++ + + + F N+
Sbjct: 892 NNSNNNSSNNNNSNNNSSNNNFNNNFNNNNNNNDNSNFNRALPFNDFNNN 941
Score = 45 (20.9 bits), Expect = 3.8e-32, Sum P(3) = 3.8e-32
Identities = 19/102 (18%), Positives = 41/102 (40%)
Query: 1239 NPSCRRMRGQDAFAPGGVATPS--FGMNRAYEENFSKLDLSSYHDEHAVFLPNSSSEDDC 1296
N R Q+ F P F N + + S ++E+ NS S +D
Sbjct: 728 NRDSSRSDSQNKFIPAQSVEGGRLFNPNNTDNSEINNENEKSINNENKFSNNNSGSSNDR 787
Query: 1297 DGLSHGDEANGLASEDADEYSGSSLNSSCIDLNCDHLENDFS 1338
+ +++ + + S + + S+ N+S + N + N+++
Sbjct: 788 NSINYRNNSFNNNSNNTNNSGNSNFNNS--NSNNGYSNNNYN 827
Score = 40 (19.1 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 9/52 (17%), Positives = 27/52 (51%)
Query: 1803 NSPTDEDEDANNSQ--NDGESTAQNSQSDENSHDGESDSHSVKSNESHFGNS 1852
N+ +++ + N + ND + NS ++ +++ ++ +N +H+ N+
Sbjct: 920 NNNNNDNSNFNRALPFNDFNNNNNNSNNNNFNYNNNFNNSYNANNSNHYKNN 971
Score = 37 (18.1 bits), Expect = 2.9e-35, Sum P(3) = 2.9e-35
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1743 HSKESSH-KRNRKANDFN 1759
++ S+H K N +N+FN
Sbjct: 961 NANNSNHYKNNNNSNNFN 978
Score = 37 (18.1 bits), Expect = 4.1e-34, Sum P(3) = 4.1e-34
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 2037 NNRTEGNSVSHTWENHF 2053
NN + NS ++ + N+F
Sbjct: 901 NNNSNNNSSNNNFNNNF 917
Score = 37 (18.1 bits), Expect = 1.3e-33, Sum P(4) = 1.3e-33
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1463 RKRNGASGESSVEREDVGGG 1482
R+R G G S+ R GGG
Sbjct: 692 RERGGGGGGSNRGRGRGGGG 711
Score = 37 (18.1 bits), Expect = 2.6e-31, Sum P(3) = 2.6e-31
Identities = 15/74 (20%), Positives = 27/74 (36%)
Query: 1077 SSQESLHHNDSLDIKLRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKSSDAKQAAN 1136
S+ S ND I R + NS ++ ++ +NSNS +++
Sbjct: 777 SNNNSGSSNDRNSINYRN-----NSFNNNSNNTNNSGNSNFNNSNSNNGYSNNNYNNNYK 831
Query: 1137 EEENITGGNDENKT 1150
N N+ N +
Sbjct: 832 NNSNYNNSNNNNNS 845
Score = 37 (18.1 bits), Expect = 2.6e-31, Sum P(3) = 2.6e-31
Identities = 27/203 (13%), Positives = 63/203 (31%)
Query: 419 DQAQEREDVEQTAEESSKVENTKPLRGAPSKEVTKKGASKEGTKWNLTD-GQSEEESDSE 477
D ++ + E++ +K N + + S N + G S + +
Sbjct: 758 DNSEINNENEKSINNENKFSNNNSGSSNDRNSINYRNNSFNNNSNNTNNSGNSNFNNSNS 817
Query: 478 NDGKPDENGS---QRGSKRSKEFKTQEKCVKGAGEDENGDRKASKDEQKIDGANSAEKSL 534
N+G + N + + S + + N + + + N+ ++
Sbjct: 818 NNGYSNNNYNNNYKNNSNYNNSNNNNNSYYNNNNSNNNNNSNYNNSSNNNNNNNNNYRNG 877
Query: 535 EDKHGKKITNSFEAVGEIVQNDTETTKENNQTDEVPEENGLVGNPNKAEVGDLNECESCT 594
+ + N++ N + NN + N N N + + N
Sbjct: 878 NNNNNYN-NNNYYNNNNSNNNSSNNNNSNNNSSNNNFNNNFNNNNNNNDNSNFNRALPFN 936
Query: 595 DSFHMNEHSDENDLG------NN 611
D + N +S+ N+ N+
Sbjct: 937 DFNNNNNNSNNNNFNYNNNFNNS 959
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 416 (151.5 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 116/357 (32%), Positives = 177/357 (49%)
Query: 40 GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPT 99
G + +P+Q+ P +L G D + +K+G+GK+ FV+ L KL + P ++L PT
Sbjct: 21 GLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGI-FCLVLTPT 79
Query: 100 REIAVQITDVVRSVGAHVKNLHVDYFIGG----TQVERPKRPVQIVVGSPGRIKQMIKLK 155
RE+A QI + R +G + L +GG TQ R +V+ +PGR+ ++
Sbjct: 80 RELAYQIAEQFRVLGKPL-GLKDCIIVGGMDMVTQALELSRKPHVVIATPGRLADHLRSS 138
Query: 156 Y-LNMDSVRLFIMDEADKLINTG---FVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQ 211
NM +R ++DEAD+L+ G F D+ I S +P +Q L+ SAT + D L LQ
Sbjct: 139 NTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQTLLFSATLT-DTLKELQ 197
Query: 212 KYMVD-PLLIRPEDATRPLLGVKQLVALIPE-CKNPSLRYVDEEKKLVQLLSQTPFNQC- 268
+ P + R + + Q L+PE K+ L + LVQ Q C
Sbjct: 198 GLATNQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVH------LVQTF-QDQLEDCS 250
Query: 269 -VIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAAR 327
+IF+N +++C L NF L QK R A+L FK RIL+ TD+A+R
Sbjct: 251 IIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYRILIATDVASR 310
Query: 328 GIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEI 384
G+D V +VIN P Y+HR+GR R G +G IT+V+ + H++ EI
Sbjct: 311 GLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEEI 367
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 403 (146.9 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 109/376 (28%), Positives = 187/376 (49%)
Query: 36 LQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-----LPVQQ 90
L E G+ + +PIQ+ A P +L D + +++GTGK+ F + L L+ +
Sbjct: 16 LAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKA 75
Query: 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP----VQIVVGSPG 146
+ ++L PTRE+A+Q+ A ++ V GG +E + + +++ +PG
Sbjct: 76 IRALVLVPTRELALQVQQSFVKY-AKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPG 134
Query: 147 RIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDN 206
R+ ++ LN++ + + DEAD++++ GF+++I + Q+P +Q L+ SAT D+
Sbjct: 135 RLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLD-DS 193
Query: 207 LATLQKYMV-DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ-LLSQTP 264
+ + K ++ DP I ++Q V I D + + V L+
Sbjct: 194 IFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDS---------DRKTEFVSHLVRSKN 244
Query: 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324
+ Q +IFS + + + L + G Q AR L FK+G V++LV TD+
Sbjct: 245 WQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDV 304
Query: 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES---LVKFHSLM 381
AARG+D A + VIN E+P A Y+HR+GR GR G+ GL IT+ S E L + +L+
Sbjct: 305 AARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364
Query: 382 GEINLDHAFNVGLVPD 397
+ L + G PD
Sbjct: 365 DK-RLPQQWYPGFEPD 379
Score = 45 (20.9 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 1449 GLDESYNMIKTPTPRKRNGASGESSVEREDVGGGK 1483
G + +N + P PR+ + A+ + ++ +GG K
Sbjct: 375 GFEPDFNKM-LPEPRRNSKAAQKQRAKKRALGGKK 408
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 403 (146.9 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 109/376 (28%), Positives = 187/376 (49%)
Query: 36 LQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIK-----LPVQQ 90
L E G+ + +PIQ+ A P +L D + +++GTGK+ F + L L+ +
Sbjct: 16 LAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKA 75
Query: 91 PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP----VQIVVGSPG 146
+ ++L PTRE+A+Q+ A ++ V GG +E + + +++ +PG
Sbjct: 76 IRALVLVPTRELALQVQQSFVKY-AKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPG 134
Query: 147 RIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDN 206
R+ ++ LN++ + + DEAD++++ GF+++I + Q+P +Q L+ SAT D+
Sbjct: 135 RLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLD-DS 193
Query: 207 LATLQKYMV-DPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQ-LLSQTP 264
+ + K ++ DP I ++Q V I D + + V L+
Sbjct: 194 IFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDS---------DRKTEFVSHLVRSKN 244
Query: 265 FNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDL 324
+ Q +IFS + + + L + G Q AR L FK+G V++LV TD+
Sbjct: 245 WQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDV 304
Query: 325 AARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES---LVKFHSLM 381
AARG+D A + VIN E+P A Y+HR+GR GR G+ GL IT+ S E L + +L+
Sbjct: 305 AARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364
Query: 382 GEINLDHAFNVGLVPD 397
+ L + G PD
Sbjct: 365 DK-RLPQQWYPGFEPD 379
Score = 45 (20.9 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 1449 GLDESYNMIKTPTPRKRNGASGESSVEREDVGGGK 1483
G + +N + P PR+ + A+ + ++ +GG K
Sbjct: 375 GFEPDFNKM-LPEPRRNSKAAQKQRAKKRALGGKK 408
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 399 (145.5 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 127/419 (30%), Positives = 214/419 (51%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
FE L E + + +E G K +P+Q P +L G D + +++G+GK+ F + L+
Sbjct: 60 FEGLGLAEWAV-ETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 118
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGG----TQ-VERPKR 136
+L + P +++ PTRE+A Q+ + +++G+ + NL +GG TQ + R
Sbjct: 119 RLAEDPYGV-FALVVTPTRELAFQLAEQFKALGSCL-NLRCSVIVGGMDMLTQTMSLVSR 176
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSV----RLFIMDEADKLINTGFVEDITWIYSQLPPM 192
P IV+ +PGRIK +++ ++ V + ++DEAD++++ GF +++ I+ LP
Sbjct: 177 P-HIVITTPGRIKVLLE-NNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKS 234
Query: 193 KQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVA-LIPECKNPSLRYVD 251
+Q L+ SAT + NL L ++ + +A L V L I E K+ Y
Sbjct: 235 RQTLLFSATMT-SNLQALLEHSSNKAYFY--EAYEGLKTVDTLTQQFIFEDKDAKELY-- 289
Query: 252 EEKKLVQLLSQTP---FNQCVIF-SNYQL--RPEVICENLANANFGAEYLSGAQDQKARL 305
LV +LSQ +IF S + R ++ + L N L+ Q RL
Sbjct: 290 ----LVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNS---QSMRL 342
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
++L FK GKV IL+ TD+A+RG+D VDLVIN +IP D Y+HR+GR R G GL
Sbjct: 343 SALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLA 402
Query: 366 ITIVSAESLVKFHSLMGEINLD-HAFNVGLVPDNLTGDQINWTQRVQTLLAKPLDQAQE 423
++I++ + H + E+ +N ++ D+L +++ +RV + K LD E
Sbjct: 403 VSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMM--KMLDNGFE 459
Score = 49 (22.3 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 511 ENGDRKASKDEQKIDGANSAEKSLEDKHGKK 541
+NG KD +K+ A+K L K GK+
Sbjct: 455 DNGFEDKVKDRRKLKRKTLADKGLLKKRGKR 485
>UNIPROTKB|P54475 [details] [associations]
symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
Length = 438
Score = 401 (146.2 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 119/364 (32%), Positives = 183/364 (50%)
Query: 30 KP-IRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPV 88
KP I + GF + + IQ P VL I QS++GTGK+ +++ LNK+ P
Sbjct: 12 KPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKID--PA 69
Query: 89 QQP-QTIILAPTREIAVQITDVVRSV--GAHVKNLHVDYFIGGTQVERP--KRPVQ--IV 141
+ Q +I APTRE+A QI + G + FIGGT ++ K +Q +V
Sbjct: 70 KDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLV 129
Query: 142 VGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSAT 201
VG+PGRI +IK + L++ ++DEAD +++ GF+ D+ +I S++P QMLV SAT
Sbjct: 130 VGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQMLVFSAT 189
Query: 202 YSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVAL-IPECKNPSLRYVDEEKKLVQLL 260
L+KYM +P E P KQ+ A I PS ++ D++K L ++
Sbjct: 190 IPEKLKPFLKKYMENPKYAHVE----P----KQVTAAKIEHILIPS-KHRDKDKLLFDIM 240
Query: 261 SQ-TPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
S P+ ++F+N + + I + L L G + R + + +
Sbjct: 241 SHLNPYLG-IVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYI 299
Query: 320 VTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITI---VSAESLVK 376
+ TDLAARGID V VIN E+P D Y+HR+GR R G+ G +TI ++LV+
Sbjct: 300 IATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVR 359
Query: 377 FHSL 380
+
Sbjct: 360 LEKM 363
Score = 46 (21.3 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 1071 DPNRRPSSQESLHHNDSLD---IKLRKKLKPGHRLQRNSKKRHSKISTERSNS 1120
D RR +++ + D + +K KK+KPG++ + + + K R+ S
Sbjct: 382 DRQRRKKRKKTPNEADEIAHRLVKKPKKVKPGYKKKMSYEMEKIKKKQRRNQS 434
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 399 (145.5 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 126/465 (27%), Positives = 226/465 (48%)
Query: 5 IQKCARTKDVLSNIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQ 64
I++ T ++ ++ L +VL E + G+ K + IQ+ A P L G D I
Sbjct: 68 IEETVTTGEIHTSFKELGVTEVLCE-----ACDQLGWKKPTKIQIEAIPVALQGRDVIGL 122
Query: 65 SKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDY 124
+++G+GK+ F V L L+ Q+ T++L PTRE+A QI + ++G+ + +
Sbjct: 123 AETGSGKTGAFAVPVLQSLLAC-AQRLHTLVLTPTRELAFQIAEQFDALGSSI-GVKTAV 180
Query: 125 FIGGTQVERP-----KRPVQIVVGSPGR-IKQMIKLKYLNMDSVRLFIMDEADKLINTGF 178
+GG + K+P +V+ +PGR I M K N+ +++ +MDEAD+++N F
Sbjct: 181 IVGGIDMMSQALVLAKKP-HVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDF 239
Query: 179 VEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMV-DPLLIRPEDATRPLLGVKQLVA 237
++ I +P ++ + SAT + + LQ+ + DP+ + ++Q
Sbjct: 240 ESEVDKILKVIPRDRRTFLFSATMTK-KVQKLQRAALQDPVKCSVSSKYATVDKLQQFYI 298
Query: 238 LIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSG 297
IP +Y D LV +L++ N ++F + + L N A L G
Sbjct: 299 FIPS------KYKD--CYLVSILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHG 350
Query: 298 AQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAG 357
Q RL +L+ FK +L+ TD+A+RG+D +VD VIN +IP + Y+HR+GR
Sbjct: 351 QMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTA 410
Query: 358 RYGTRGLVITIVS---AESLVKFHSLMGEINLDHAFNVGLVPDNLTGDQINWTQRVQTLL 414
R G G IT V+ E + +L+G+ L AF + ++++ QR +
Sbjct: 411 RAGRSGKSITFVTQYDVELFQRIEALIGK-KLP-AFPTQEEEVMMLVERVSEAQRFARIE 468
Query: 415 AKPLDQAQER----EDVEQTAEESSKVENTKPLRGAPSKEVTKKG 455
K + ++R ++V++ E+SS V K ++G + +++G
Sbjct: 469 MKESSEKRKRPSAAQEVDEDGEQSSGVR--KKVKGGGFRRPSRRG 511
Score = 48 (22.0 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 1112 KISTERSNSNSAPREKSSDAKQAANEEENITGG 1144
K S+E+ SA +E D +Q++ + + GG
Sbjct: 470 KESSEKRKRPSAAQEVDEDGEQSSGVRKKVKGG 502
Score = 48 (22.0 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 896 KRRSRPRKNKENTDILNTLGQDKTSAHGRTPSGGHRTPERR 936
K S RK ++ G+ + + GG R P RR
Sbjct: 470 KESSEKRKRPSAAQEVDEDGEQSSGVRKKVKGGGFRRPSRR 510
Score = 43 (20.2 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 1063 RYRPDSDGDPNRRPSSQESLHHNDSLDIKLRKKLKPGHRLQRNSKK 1108
R + +RPS+ + + + +RKK+K G +R S++
Sbjct: 466 RIEMKESSEKRKRPSAAQEVDEDGEQSSGVRKKVKGGG-FRRPSRR 510
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 425 (154.7 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
Identities = 113/354 (31%), Positives = 185/354 (52%)
Query: 25 DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLI 84
D+ I I + L+ G K PIQ A + G D I ++++GTGK++ F + ++K+I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 85 KLPVQQ-----PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRP-- 137
K + PQ ++LAPTRE+A Q+ R + + + Y GGT + + R
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICL-Y--GGTPIGQQMRELN 236
Query: 138 --VQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195
+ + VG+PGRI ++K LN+ V+ ++DEAD+++ GF ED+ I +LP +Q
Sbjct: 237 YGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQS 296
Query: 196 LVVSATYSHDNLATLQKYMVDPLLIR-PEDATRPLLGVKQLVALIPECKNPSLRYVDEEK 254
++ SAT + +KY+ +PL I D+ + L + ++ + S
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAAD----SYGRASIIG 352
Query: 255 KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG 314
LV+ +C++F+ + + + LA + + E L G Q R +L F+ G
Sbjct: 353 PLVK--EHGKGGKCIVFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDG 409
Query: 315 KVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITI 368
ILV TD+AARG+D NVDLVI+ E+P++ T++HR GR GR G +G I I
Sbjct: 410 NFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILI 463
Score = 50 (22.7 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
Identities = 25/84 (29%), Positives = 36/84 (42%)
Query: 1859 AYQSSSAQSEDGTSYKSISWDAYSVIDEPESYDVSWRTCSSESAAREKNSGQRSRGSGDK 1918
+Y SSS +S G SY + SY S + S S +++SG S GSG
Sbjct: 522 SYGSSSGRSGGG-SYGGYGGSSGRSGGGGGSYGGSGGSSSRYSGGSDRSSGFGSFGSGGS 580
Query: 1919 AARKSASLPASQIALRDGKGDFKS 1942
+ + +SQ + R G F S
Sbjct: 581 SGGFGSDR-SSQSSGRSSFGGFGS 603
Score = 45 (20.9 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 951 GAYTGDKGGRNRGHSVNSRKDHSFAG-ETPRSKGGFDSYLDQSMDS 995
G+Y G GG + +S S + F + S GGF S D+S S
Sbjct: 550 GSY-GGSGGSSSRYSGGSDRSSGFGSFGSGGSSGGFGS--DRSSQS 592
Score = 39 (18.8 bits), Expect = 6.1e-36, Sum P(2) = 6.1e-36
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 951 GAYTGDKGGRNRGHSVNSRKDHSFAGETPRSKGGFDSY 988
G +G GG + + ++G + RS G F S+
Sbjct: 539 GGSSGRSGGGGGSYGGSGGSSSRYSGGSDRSSG-FGSF 575
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 429 (156.1 bits), Expect = 4.5e-37, P = 4.5e-37
Identities = 118/359 (32%), Positives = 183/359 (50%)
Query: 30 KPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVA----ALNKLIK 85
K I GL G +PIQ+ P VL G D I + +G+GK++VFV+ AL +
Sbjct: 186 KGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYS 245
Query: 86 LPVQQ---PQTIILAPTREIAVQITDVVRSVGAHVK-----NLHVDYFIGGTQVERP--- 134
LP ++ P +I+ P+RE+A Q ++++ H++ + +GG V
Sbjct: 246 LPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDV 305
Query: 135 -KRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMK 193
R V IVV +PGR+ M+ K L +D R MDEAD++I+ GF ED+ I+S +
Sbjct: 306 ISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQR 365
Query: 194 QMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEE 253
Q L+ SAT + +V P+ I A + V Q V YV +E
Sbjct: 366 QTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQV-----------EYVKQE 414
Query: 254 KKLVQLLS--QTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSF 311
K+V LL Q +IF+ + + I E L A + G +DQ+ R ++D++
Sbjct: 415 AKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAY 474
Query: 312 KRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVS 370
+ GK +LV TD+A++G+D NV VIN ++P D Y+HR+GR GR T+GL T+++
Sbjct: 475 RVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLIN 533
WARNING: HSPs involving 878 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.129 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 2355 2158 0.00090 126 3 11 23 0.49 34
41 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1128
No. of states in DFA: 631 (67 KB)
Total size of DFA: 890 KB (2367 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 269.16u 0.22s 269.38t Elapsed: 00:00:39
Total cpu time: 269.27u 0.22s 269.49t Elapsed: 00:00:40
Start: Thu Aug 15 16:36:13 2013 End: Thu Aug 15 16:36:53 2013
WARNINGS ISSUED: 2