RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8497
(2355 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 127 bits (320), Expect = 1e-33
Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 6/205 (2%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F ++ + I ++ GF K + IQM P LN IV ++ TG A
Sbjct: 6 FN-ELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVA-QARTGSGKTASFAIPL 63
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVE---RPKRPV 138
+ + IIL PTRE+A+Q+ D + S+ + KNL + GG + + +
Sbjct: 64 IELVNENNGIEAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALKNA 122
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198
IVVG+PGRI I LN+ +V+ FI+DEAD+++N GF++D+ I + K++L+
Sbjct: 123 NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLF 182
Query: 199 SATYSHDNLATLQKYMVDPLLIRPE 223
SAT + L +KYM D I+ +
Sbjct: 183 SATMPREILNLAKKYMGDYSFIKAK 207
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 123 bits (309), Expect = 5e-32
Identities = 69/211 (32%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
SN + + ++ D+ + + + +G+ GF K S IQ A + GYD I Q++SGTGK+
Sbjct: 5 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 64
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER 133
F ++ L + I+L ++ Q ++LAPTRE+A QI VV ++G ++ G
Sbjct: 65 TFAISILQQ-IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 123
Query: 134 PK----RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
+ I+VG+PGR+ M+ +YL+ +++F++DEAD++++ GF + I I+ +L
Sbjct: 124 VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL 183
Query: 190 PPMKQMLVVSATYSHDNLATLQKYMVDPLLI 220
Q++++SAT D L +K+M DP+ I
Sbjct: 184 NSNTQVVLLSATMPSDVLEVTKKFMRDPIRI 214
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 120 bits (301), Expect = 6e-31
Identities = 71/209 (33%), Positives = 123/209 (58%), Gaps = 5/209 (2%)
Query: 16 SNIDVLFEN--DVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSI 73
+N D + D+ +++ + +G+ GF + S IQ A ++ G+D + Q++SGTGK+
Sbjct: 3 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTG 62
Query: 74 VFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKN--LHVDYFIGGTQV 131
F +AAL ++ + PQ ++LAPTRE+A+QI VV ++ H+ +
Sbjct: 63 TFSIAALQRIDTSV-KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 121
Query: 132 ERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPP 191
R QIVVG+PGR+ I+ + D +++FI+DEAD+++++GF E I I++ LPP
Sbjct: 122 AEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP 181
Query: 192 MKQMLVVSATYSHDNLATLQKYMVDPLLI 220
Q++++SAT +D L K+M +P+ I
Sbjct: 182 TTQVVLLSATMPNDVLEVTTKFMRNPVRI 210
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 116 bits (290), Expect = 1e-29
Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 8/205 (3%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F D L++ + + + + GF S +Q P + G D + Q+KSG GK+ VFV+A L
Sbjct: 3 FR-DFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERP-----KR 136
+L + Q +++ TRE+A QI+ ++ N+ V F GG +++ K
Sbjct: 62 QLEPVT-GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 120
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLI-NTGFVEDITWIYSQLPPMKQM 195
IVVG+PGRI + + K LN+ ++ FI+DE DK++ D+ I+ P KQ+
Sbjct: 121 CPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQV 180
Query: 196 LVVSATYSHDNLATLQKYMVDPLLI 220
++ SAT S + +K+M DP+ I
Sbjct: 181 MMFSATLSKEIRPVCRKFMQDPMEI 205
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 112 bits (280), Expect = 4e-28
Identities = 69/203 (33%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F+ + + + + +G+ GF K S IQ A ++ G D I QS+SGTGK+ F ++ L
Sbjct: 19 FD-TMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 77
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVK---NLHVDYFIGGTQVERPKRPV 138
L V++ Q +ILAPTRE+AVQI + ++G ++ + + G + +
Sbjct: 78 CLDI-QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 136
Query: 139 QIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVV 198
+V G+PGR+ MI+ + L ++++ ++DEAD+++N GF E I +Y LPP Q++++
Sbjct: 137 HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 196
Query: 199 SATYSHDNLATLQKYMVDPLLIR 221
SAT H+ L K+M DP+ I
Sbjct: 197 SATLPHEILEMTNKFMTDPIRIL 219
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 110 bits (276), Expect = 1e-26
Identities = 48/337 (14%), Positives = 88/337 (26%), Gaps = 61/337 (18%)
Query: 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116
I+ G GK+ ++ A + + IK + +T+ILAPTR +A ++ + +R +
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIK---RGLRTLILAPTRVVAAEMEEALRGLPIR 64
Query: 117 VKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176
+ + G + + + + L + + + L IMDEA
Sbjct: 65 YQTPAIRAEHTGRE--------IVDLMCHATFTMRL-LSPIRVPNYNLIIMDEAHFTDPA 115
Query: 177 GFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYMVDPLLIRPEDATRPLLGVKQLV 236
+ ++AT Q
Sbjct: 116 SIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAP--------------------- 154
Query: 237 ALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLS 296
+ + + V F I L LS
Sbjct: 155 -----IMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLS 209
Query: 297 GAQDQKARLASLDSFKRGKVRILVTTDLAARGIDA---------------ANVDLVINLE 341
+ + +VTTD++ G + D +
Sbjct: 210 RKTFDSEYIK----TRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVI 265
Query: 342 I----PHDAATYLHRMGRAGRYGTRGLVITIVSAESL 374
+ P ++ R GR GR I E L
Sbjct: 266 LAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEPL 302
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 103 bits (256), Expect = 4e-25
Identities = 63/203 (31%), Positives = 111/203 (54%), Gaps = 6/203 (2%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
FE D +++ + G+ E G+ K SPIQ + P L+G D + ++K+GTGKS +++ L
Sbjct: 5 FE-DYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-- 139
+ + L Q +++ PTRE+A+Q++ + V H+ V GGT + +
Sbjct: 64 R-LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
+V+ +PGRI +IK +D V++ ++DEADKL++ FV+ + I LP +Q+L+
Sbjct: 123 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 182
Query: 198 VSATYSHDNLATLQKYMVDPLLI 220
SAT+ + ++ P I
Sbjct: 183 YSATFPLSVQKFMNSHLEKPYEI 205
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 103 bits (256), Expect = 9e-25
Identities = 50/215 (23%), Positives = 105/215 (48%), Gaps = 18/215 (8%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F+ ++ ++ IR + + + +PIQ A P +L D + +++G+GK+ F++ +N
Sbjct: 23 FD-ELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 81
Query: 82 KLIKLPVQQ--------PQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGT---- 129
L+ + Q P+ +ILAPTRE+A+QI + + L GG
Sbjct: 82 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADTHS 140
Query: 130 QVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQL 189
Q+ + ++V +PGR+ I+ ++++ + ++DEAD++++ GF I I +
Sbjct: 141 QIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES 200
Query: 190 ----PPMKQMLVVSATYSHDNLATLQKYMVDPLLI 220
+Q L+ SAT+ + ++ + + +
Sbjct: 201 NMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 235
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 99.6 bits (247), Expect = 1e-23
Identities = 32/215 (14%), Positives = 71/215 (33%), Gaps = 30/215 (13%)
Query: 20 VLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAA 79
LF D L+++ + IQ +L + +G GK+ + +
Sbjct: 22 CLFPEDFLLKE--FVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMS 79
Query: 80 LNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH----VKNLHVDYFIGGTQVER-- 133
L + + + ++ PT + +Q + +R +NL Y + E+
Sbjct: 80 LFLAL----KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKEN 135
Query: 134 ---PKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLIN-----------TGFV 179
R +IV+ + + + + + +D+ D ++ GF
Sbjct: 136 FMQNLRNFKIVITTTQFLSKHYR----ELGHFDFIFVDDVDAILKASKNVDKLLHLLGFH 191
Query: 180 EDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM 214
D+ ++V +AT A L + +
Sbjct: 192 YDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL 226
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 95.1 bits (235), Expect = 3e-22
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 7/207 (3%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
FE D +++ + G+ E GF K SPIQ A P + G D + ++K+GTGK+ FV+
Sbjct: 3 FE-DFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP-TL 60
Query: 82 KLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-- 139
+ +K + + Q +I+ PTRE+ T V + GGT + +
Sbjct: 61 EKVKPKLNKIQALIMVPTREL-ALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNET 119
Query: 140 --IVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLV 197
I+VG+PGR+ + K ++ LFIMDEADK+++ F I I S LPP Q L+
Sbjct: 120 VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLL 179
Query: 198 VSATYSHDNLATLQKYMVDPLLIRPED 224
SAT+ + K++ P I +
Sbjct: 180 FSATFPLTVKEFMVKHLHKPYEINLME 206
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 85.8 bits (211), Expect = 4e-19
Identities = 29/207 (14%), Positives = 83/207 (40%), Gaps = 13/207 (6%)
Query: 17 NIDVLFENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFV 76
++ L E+ I L+E G + P Q A V +G + ++ + GK+++
Sbjct: 2 KVEELAES---ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAE 58
Query: 77 VAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKR 136
+A + + I + +++ + P R +A + + + + + +
Sbjct: 59 MAMVREAI----KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGI-STGDYESRDEHLG 113
Query: 137 PVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYS---QLPPMK 193
I+V + + +I+ + + +V ++DE L + + + + ++
Sbjct: 114 DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKAL 173
Query: 194 QMLVVSATYSHDNLATLQKYMVDPLLI 220
+++ +SAT N+ + +++ +
Sbjct: 174 RVIGLSATAP--NVTEIAEWLDADYYV 198
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 88.1 bits (218), Expect = 4e-19
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 14/121 (11%)
Query: 266 NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS----------LDSFKRGK 315
+ +IF + + + + + L A D S L + G
Sbjct: 37 GRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGD 96
Query: 316 VRILVTTDLAARG---IDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
++ + + +P DA + R GR GR G G+ + E
Sbjct: 97 FDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGE 155
Query: 373 S 373
Sbjct: 156 R 156
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 85.1 bits (209), Expect = 7e-19
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 7/205 (3%)
Query: 22 FENDVLIEKPIRQGLQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALN 81
F + I + ++ F K + IQ P L G + QS++GTGK+ +++ +
Sbjct: 3 FT-RFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 61
Query: 82 KLIKLPVQQP---QTIILAPTREIAVQITDVVRSVGAHVKN---LHVDYFIGGTQVERPK 135
K+ + +I + + + + +E+
Sbjct: 62 KIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN 121
Query: 136 RPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQM 195
IV+G+PGRI I+ + L++ + + ++DEAD +++ GF+ D+ I +++P QM
Sbjct: 122 VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQM 181
Query: 196 LVVSATYSHDNLATLQKYMVDPLLI 220
LV SAT L+KYM +P +
Sbjct: 182 LVFSATIPEKLKPFLKKYMENPTFV 206
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 86.9 bits (214), Expect = 8e-19
Identities = 50/287 (17%), Positives = 105/287 (36%), Gaps = 39/287 (13%)
Query: 100 REIAVQITDVVRSVGAHVKNLHVDYFIGGTQVERPKRPVQ-----IVVGSPGRIKQMIKL 154
+E+ + +++R +K L + + + PK+ V I + L
Sbjct: 16 KEVRKLLREMLRD---ALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGL 72
Query: 155 KYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKYM 214
+ +++L A +L+ T + + +L + A+ ++
Sbjct: 73 LLYHAMALKL---HHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS---------KEIF 120
Query: 215 VDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNY 274
D + + + +P + + E + + L + ++ ++F+NY
Sbjct: 121 SDKRMKKAISLLVQAKEIGL--------DHPKMDKLKEI--IREQLQRKQNSKIIVFTNY 170
Query: 275 QLRPEVICENLANANFGAEYLSGAQDQKARL--------ASLDSFKRGKVRILVTTDLAA 326
+ + I L A+ G ++ LD F RG+ +LV T +
Sbjct: 171 RETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGE 230
Query: 327 RGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAES 373
G+D VDLV+ E A + R GR GR+ G VI +++ +
Sbjct: 231 EGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGT 276
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 80.1 bits (196), Expect = 4e-17
Identities = 40/201 (19%), Positives = 77/201 (38%), Gaps = 17/201 (8%)
Query: 28 IEKPIRQGLQEN-GFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKL 86
+E +Q LQE G+ + P Q VL+G D +V +G GKS+ + + AL
Sbjct: 9 LESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN--- 65
Query: 87 PVQQPQTIILAPTREIAVQITDVVRSVGAHVKNLHVDYFIG---GTQVERPKRPVQIVVG 143
T++++P + D +++ G L+ ++++
Sbjct: 66 ----GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYI 121
Query: 144 SPGRIKQMIKLKYLNMDSVRLFIMDEADKLINTGFVEDITW----IYSQLPPMKQMLVVS 199
+P R+ L++L + L +DEA + G + Q P + ++
Sbjct: 122 APERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALT 181
Query: 200 ATYSHDNLATLQK--YMVDPL 218
AT + + + DPL
Sbjct: 182 ATADDTTRQDIVRLLGLNDPL 202
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 74.2 bits (181), Expect = 2e-15
Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 251 DEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLAS 307
+EE K L L Q VIF N + + E + L N F + Q+ R
Sbjct: 10 EEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTI 69
Query: 308 LDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVIT 367
+ F+ G RIL++TDL ARGID V LVIN ++P + Y+HR+GR GR+G +G+ I
Sbjct: 70 MKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN 129
Query: 368 IVSAESLVKFHSLMGEIN 385
V+ E + L +
Sbjct: 130 FVTNEDVGAMRELEKFYS 147
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 70.2 bits (171), Expect = 2e-13
Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 18/143 (12%)
Query: 249 YVDEEK--KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLA 306
V++E L +L + +I++ E I E+L N +
Sbjct: 8 AVNDESISTLSSILEKLG-TGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKG 60
Query: 307 SLDSFKRGKVRILVTT----DLAARGIDAA-NVDLVINLEIPHDAATYLHRMGRAGRYGT 361
+ F G++ L+ T RG+D + + + P + +
Sbjct: 61 DYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSP 116
Query: 362 RGLVITIVSAESLVKFHSLMGEI 384
+ + + ++ + L+ +
Sbjct: 117 QMVKLLAYLYRNVDEIERLLPAV 139
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 66.7 bits (161), Expect = 2e-12
Identities = 29/194 (14%), Positives = 77/194 (39%), Gaps = 9/194 (4%)
Query: 36 LQENGFVKESPIQMAAFPYVLNGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTII 95
+ ++ Q + + ++ +G GK+++ ++ A +L K + ++
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLM 57
Query: 96 LAPTREIAVQITDVVRSVGAHVKNLHVDYFIGGTQVER--PKRPVQIVVGSPGRIKQMIK 153
LAPT+ + +Q + R + V + ER +++V +P I+ +
Sbjct: 58 LAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLL 117
Query: 154 LKYLNMDSVRLFIMDEADKLINTGFVEDITWIYSQLPPMKQMLVVSATYSHDNLATLQKY 213
++++ V L + DEA + + I Y + ++ ++A+ ++
Sbjct: 118 AGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVI 177
Query: 214 ---MVDPLLIRPED 224
++ + R E+
Sbjct: 178 NNLGIEHIEYRSEN 191
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 65.3 bits (158), Expect = 2e-12
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 231 GVKQLVALIPECKNPSLRYVDEEK--KLVQLLSQTPFNQCVIFSNYQLRPEVICENLANA 288
G+KQ + +E K L L Q VIF N + + + + E + A
Sbjct: 7 GIKQFFVAVER---------EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 57
Query: 289 NFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAAT 348
NF + G QK R + + F+ G R+L++TD+ ARG+D V L+IN ++P++
Sbjct: 58 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 117
Query: 349 YLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385
Y+HR+GR+GRYG +G+ I V + + + +
Sbjct: 118 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 154
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 64.2 bits (155), Expect = 3e-12
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 249 YVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
V+E ++ L +LL F ++F + + + L + F A + G Q R
Sbjct: 10 EVNENERFEALCRLLKNKEF-YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQRE 68
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
+ FK+ K+RIL+ TD+ +RGID +++ VIN +P + +Y+HR+GR GR G +G
Sbjct: 69 KVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA 128
Query: 366 ITIVSAESLVKFHSLMGEINL 386
I+I++ K + + L
Sbjct: 129 ISIINRREYKKLRYIERAMKL 149
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 62.6 bits (151), Expect = 3e-11
Identities = 23/123 (18%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 254 KKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKR 313
+KL ++L + ++ +IF+ + I + F ++ ++ R L+ F+
Sbjct: 82 RKLREILERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTSREEREEILEGFRT 136
Query: 314 GKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYG---TRGLVITIVS 370
G+ R +V++ + GID + ++ + + A Y+ R+GR R ++ ++S
Sbjct: 137 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 196
Query: 371 AES 373
+
Sbjct: 197 RGT 199
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 59.3 bits (142), Expect = 5e-10
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 245 PSLRY--VDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQ 299
P++RY +++ K L++ + + +I+ N + + E L + A
Sbjct: 5 PNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGL 64
Query: 300 DQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRY 359
+ R + F+R ++I+V T GI+ NV V++ +IP + +Y GRAGR
Sbjct: 65 ENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 124
Query: 360 GTRGLVITIVS 370
G +
Sbjct: 125 GLPAEAMLFYD 135
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 55.8 bits (133), Expect = 4e-09
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 13/161 (8%)
Query: 231 GVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF 290
++Q L K D+ + L + Q +IF + + + +
Sbjct: 5 NIRQYYVLCEHRK-------DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGH 57
Query: 291 GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPH------ 344
LSG + R + + F+ GK ++L+TT++ ARGID V +V+N ++P
Sbjct: 58 QVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEP 117
Query: 345 DAATYLHRMGRAGRYGTRGLVITIVSAESLVKFHSLMGEIN 385
D TYLHR+GR GR+G +GL ++ + L + N
Sbjct: 118 DYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 158
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 55.1 bits (131), Expect = 8e-09
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 249 YVDEEKK---LVQLLSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARL 305
+V+E +K L L S+ NQ +IF N R E++ + + + + Y Q+ R
Sbjct: 13 FVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERN 72
Query: 306 ASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLV 365
F++GKVR LV +DL RGID V++VIN + P A TYLHR+GR+GR+G GL
Sbjct: 73 KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA 132
Query: 366 ITIVSAESLVKFHSLMGEINLDHA 389
I +++ + + E+ + A
Sbjct: 133 INLINWNDRFNLYKIEQELGTEIA 156
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 53.6 bits (128), Expect = 1e-08
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 11/116 (9%)
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRIL 319
L + +IF + + + + + L A D ++
Sbjct: 30 LEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIPTNGDVVV 82
Query: 320 VTTDLAARGIDA---ANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITIVSAE 372
V TD G + +D + P DA + R GR GR G G+ + E
Sbjct: 83 VATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPGIYRFVAPGE 137
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 53.6 bits (128), Expect = 3e-08
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 266 NQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLA 325
+ ++ + + E + + L A YL R+ + + GK +LV +L
Sbjct: 32 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 91
Query: 326 ARGIDAANVDLVINLEIPHDAATYLHR--MGRAGRYGTRG 363
G+D V LV L+ + R + GR
Sbjct: 92 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 131
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 48.1 bits (113), Expect = 2e-06
Identities = 54/147 (36%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 231 GVKQLVALIPECKNPSLRYVDEEKKLVQLLSQTPFNQCVIFSNYQLRPEVICENLANANF 290
G++Q + + ++ +KL LL FNQ VIF R + + L NF
Sbjct: 1 GLQQYYVKLKD--------NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF 52
Query: 291 GAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVINLEIPHDAATYL 350
A + Q+ RL+ FK + RILV T+L RG+D V++ N ++P D+ TYL
Sbjct: 53 PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 112
Query: 351 HRMGRAGRYGTRGLVITIVSAESLVKF 377
HR+ RAGR+GT+GL IT VS E+ K
Sbjct: 113 HRVARAGRFGTKGLAITFVSDENDAKI 139
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 46.8 bits (110), Expect = 8e-06
Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 20/183 (10%)
Query: 210 LQKYMVDPLLIRPEDATRPLLGVKQLVALIPEC---KNPSLRYVDEEK-------KLVQL 259
L + ++ + D + L+ EC L + + KL +
Sbjct: 4 LVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAI 63
Query: 260 LSQTPFNQCVIFSNYQLRPEVICENLANA-NFGAEYLSGAQDQKARLASLDSFKRGKVRI 318
++ N+ + + + + LA GA + R D+F+RG +++
Sbjct: 64 TAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKV 123
Query: 319 LVTTDLAARGIDAANVDLVI-------NLEIPHDAATYLHRMGRAGRYG--TRGLVITIV 369
+V T A G++ +++ + Y GRAGR G RG I IV
Sbjct: 124 VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 183
Query: 370 SAE 372
Sbjct: 184 GKR 186
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 36.0 bits (83), Expect = 0.022
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 318 ILVTTDLAARGIDAANVDLVINL--------EIPHDAATYLHRMGRAGRYGTRGLVITIV 369
+ + T++A RG D + V L E GR+GR G G+ +
Sbjct: 85 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 144
Query: 370 SAE 372
S E
Sbjct: 145 SME 147
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 35.2 bits (80), Expect = 0.030
Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 21/151 (13%)
Query: 53 PYVLNGYD-AIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVR 111
P V + A + + +G+GKS A + + ++L P+ + +
Sbjct: 2 PAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-------GYKVLVLNPSVAATLGFGAYMS 54
Query: 112 SVGAHVKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEAD 171
K VD I + + + + + I DE
Sbjct: 55 ------KAHGVDPNIRTGVRTITTGSPITYS----TYGKFLADGGCSGGAYDIIICDECH 104
Query: 172 KLI-NTGFVEDITWIYSQLPPMKQMLVVSAT 201
+ I + Q LVV AT
Sbjct: 105 STDATSILG--IGTVLDQAETAGARLVVLAT 133
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 36.1 bits (82), Expect = 0.044
Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 8/171 (4%)
Query: 206 NLATLQKYMVDPLLIRPEDATRPLLGVKQLVALIPECKNPSLRYVDEEK-----KLVQLL 260
++ +L+K P LI + T L ++ K ++ +
Sbjct: 54 SITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMT 113
Query: 261 SQTPFNQCVIFSNYQLRPEVICENLANANFGAEYLSGAQDQKARLASLDSFKRG---KVR 317
T ++ V+ SNY ++ + N + L G K R ++ F +
Sbjct: 114 RTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFI 173
Query: 318 ILVTTDLAARGIDAANVDLVINLEIPHDAATYLHRMGRAGRYGTRGLVITI 368
++++ G++ + ++ + + A M R R G +
Sbjct: 174 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 224
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 32.3 bits (73), Expect = 0.69
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 1071 DPNRRPSSQESLHH------NDSLDIKLRKKLKPGHRLQRNSKKRHSKI-STERSNSNSA 1123
+ R ++ E+L H + + K+ + LK KK + + S R + A
Sbjct: 245 ERKSRMTASEALQHPWLKQKIERVSTKVIRTLKHRRYYHTLIKKDLNMVVSAARISCGGA 304
Query: 1124 PREKSSDA 1131
R + +
Sbjct: 305 IRSQKGVS 312
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory
fumarate reductase) {Shewanella frigidimarina [TaxId:
56812]}
Length = 317
Score = 31.5 bits (70), Expect = 1.1
Identities = 15/99 (15%), Positives = 31/99 (31%)
Query: 1474 VEREDVGGGKSLRNLLLRRALMNKQNEVNLWHRENQGWNQKAQGWNEHTEVQTGLNQGWH 1533
V++ GG S+ + A+ KQ + + + + + A +
Sbjct: 48 VDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAE 107
Query: 1534 QKTQGWNEHSELQNGIDYGRLPIGHQHNHDHRHKHRFNH 1572
Q G L +D + G + + HR +
Sbjct: 108 QSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSS 146
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 31.3 bits (70), Expect = 1.2
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 22/120 (18%)
Query: 1037 YEIDYVEQPVDEKKSRRELSQKMDSDRYRPDSDG---------------DPNRRPSSQES 1081
+E+ + E+S ++ P D + RP +E
Sbjct: 204 WELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFREL 263
Query: 1082 LHHNDSLDIKLRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPREKSSDAKQAANEEENI 1141
+ + P L +R S SN A + D + +E +
Sbjct: 264 IIEFSKM------ARDPQRYLVIQGDERMHLPSPTDSNFYRALMD-EEDMDDVVDADEYL 316
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 307
Score = 31.2 bits (70), Expect = 1.4
Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 1071 DPNRRPSSQESLHH-----NDSLDIKLRKKLKPGHRLQRNSKKRHSK 1112
DP +R + +++L H + +LD + + + ++++N K K
Sbjct: 251 DPEKRFTCEQALQHPWIAGDTALDKNIHQSVSE--QIKKNFAKSKWK 295
>d1bqba_ d.92.1.2 (A:) Aureolysin {Staphylococcus aureus [TaxId:
1280]}
Length = 301
Score = 31.1 bits (70), Expect = 1.7
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 9/86 (10%)
Query: 2036 LNNRTEGNSVSHTWENHFATGTDRRSHQYPAYGSMSRHDLYFDESQLLGNEALGRGEIRG 2095
N++T ++ + +F R Y + +D Y GR
Sbjct: 42 FNDQTGQATLITNEDENFVKDDQRAGVD-ANYYAKQTYDYY--------KNTFGRESYDN 92
Query: 2096 SGGGFASRVSSVGPANESGLVVAGWN 2121
G S + A W
Sbjct: 93 HGSPIVSLTHVNHYGGQDNRNNAAWI 118
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 30.0 bits (66), Expect = 1.7
Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 12/145 (8%)
Query: 57 NGYDAIVQSKSGTGKSIVFVVAALNKLIKLPVQQPQTIILAPTREIAVQITDVVRSVGAH 116
G ++ G GK+ F+ L + + ++ +T++LAPTR + ++ + +
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECAR---RRLRTLVLAPTRVVLSEMKEAFHGLDVK 62
Query: 117 VKNLHVDYFIGGTQVERPKRPVQIVVGSPGRIKQMIKLKYLNMDSVRLFIMDEADKLINT 176
G +V + L+ + + + IMDEA L
Sbjct: 63 FHTQAFSAHGSGREVIDAMCHATL---------TYRMLEPTRVVNWEVIIMDEAHFLDPA 113
Query: 177 GFVEDITWIYSQLPPMKQMLVVSAT 201
+ ++++AT
Sbjct: 114 SIAARGWAAHRARANESATILMTAT 138
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 29.6 bits (66), Expect = 4.7
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 24/103 (23%)
Query: 279 EVICENLANANFGAEYLSGAQDQKARLASLDSFKRGKVRILVTTDLAARGIDAANVDLVI 338
V+ +L A L+ ++ + K+ K ++ TD+A G + V+ V+
Sbjct: 50 NVMAASLRKAGKSVVVLNRKTFEREY----PTIKQKKPDFILATDIAEMGAN-LCVERVL 104
Query: 339 NLEIPHDAATY-------------------LHRMGRAGRYGTR 362
+ R GR GR R
Sbjct: 105 DCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147
>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId:
9606]}
Length = 142
Score = 28.6 bits (64), Expect = 5.2
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 11/80 (13%)
Query: 1596 PFVSNFSNSFNFDTSFSNGMSQRFSNGSQPARCFVETHK-----------GKTRLNDVSR 1644
P V +NF + + ++ F Q +E H+ + + +++
Sbjct: 51 PVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILE 110
Query: 1645 CEHQGEFLPSLRKRCDVGHH 1664
+ SL +
Sbjct: 111 KSGRIFCTASLIGTKGDIPN 130
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
(Aplysia californica), twk43 [TaxId: 6500]}
Length = 352
Score = 29.3 bits (65), Expect = 6.7
Identities = 8/62 (12%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 1071 DPNRRPSSQESLHH----NDSLDIKLRKKLKPGHRLQRNSKKRHSKISTERSNSNSAPRE 1126
+P +R + ++L H D ++ R +++++ K++++ +
Sbjct: 270 EPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRIANF 329
Query: 1127 KS 1128
S
Sbjct: 330 SS 331
>d1nl1a2 g.32.1.1 (A:1-65) Prothrombin {Cow (Bos taurus) [TaxId:
9913]}
Length = 65
Score = 26.3 bits (58), Expect = 9.6
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 1320 SLNSSCIDLNCDHLENDFSEEEAEEYLEETYVTDEY-------HECDDERCSHDDCGD 1370
+L C++ C EEA E LE TD + + R ++C +
Sbjct: 13 NLERECLEEPCSR-------EEAFEALESLSATDAFWAKYTACESARNPREKLNECLE 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.128 0.373
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 8,344,751
Number of extensions: 389343
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 45
Length of query: 2355
Length of database: 2,407,596
Length adjustment: 100
Effective length of query: 2255
Effective length of database: 1,034,596
Effective search space: 2333013980
Effective search space used: 2333013980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (27.4 bits)