BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8498
         (90 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
           Assembly From A Cdc26-Apc6 Structure
 pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
           Assembly From A Cdc26-Apc6 Structure
 pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
           Assembly From A Cdc26-Apc6 Structure
 pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
           Assembly From A Cdc26-Apc6 Structure
 pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
           Assembly From A Cdc26-Apc6 Structure
 pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
           Assembly From A Cdc26-Apc6 Structure
          Length = 330

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query: 16  YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
           +  AE  F++AL K+K +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P 
Sbjct: 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268

Query: 76  KASTFCCI 83
            AST+  I
Sbjct: 269 NASTYSAI 276


>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
 pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
          Length = 597

 Score = 32.7 bits (73), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 19  AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78
           A N F  AL  VK+         W     NLGH  RKLK Y+ A++   Q L+++   A+
Sbjct: 494 AINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551

Query: 79  TFCCIVV 85
               I +
Sbjct: 552 VHTAIAL 558


>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
          Superhelix (Trigonal Crystal Form)
 pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
          Superhelix (Orthorombic Crystal Form)
          Length = 136

 Score = 30.4 bits (67), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
          NLG+   K   Y+EA+E++++AL + P  A  +  +
Sbjct: 6  NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 41



 Score = 30.4 bits (67), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
          NLG+   K   Y+EA+E++++AL + P  A  +  +
Sbjct: 40 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75



 Score = 30.4 bits (67), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 48  NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
           NLG+   K   Y+EA+E++++AL + P  A  +  +
Sbjct: 74  NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109



 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 48  NLGHVNRKLKKYEEALEFHKQALVVAP 74
           NLG+   K   Y+EA+E++++AL + P
Sbjct: 108 NLGNAYYKQGDYDEAIEYYQKALELDP 134


>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
          Superhelix
          Length = 70

 Score = 30.0 bits (66), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
          NLG+   K   Y+EA+E++++AL + P  A  +  +
Sbjct: 8  NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 43



 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAP 74
          NLG+   K   Y+EA+E++++AL + P
Sbjct: 42 NLGNAYYKQGDYDEAIEYYQKALELDP 68


>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
          Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
          Tpr Motif
          Length = 125

 Score = 30.0 bits (66), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
          NLG+   K   Y+EA+E++++AL + P  A  +  +
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 49



 Score = 30.0 bits (66), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
          NLG+   K   Y+EA+E++++AL + P  A  +  +
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83



 Score = 28.9 bits (63), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 48  NLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79
           NLG+   K   Y+EA+E++++AL + P  A  
Sbjct: 82  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113


>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
          Tpr Motif
 pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
          Tpr Motif
          Length = 91

 Score = 30.0 bits (66), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
          NLG+   K   Y+EA+E++++AL + P  A  +  +
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 49



 Score = 28.5 bits (62), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79
          NLG+   K   Y+EA+E++++AL + P  A  
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79


>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
          Length = 125

 Score = 29.6 bits (65), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
          NLG+   K   Y+EA+E++++AL + P  A  +  +
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNL 49



 Score = 29.6 bits (65), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
          NLG+   K   Y+EA+E++++AL + P  A  +  +
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNL 83



 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 48  NLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79
           NLG+   K   Y+EA+E++++AL + P  A  
Sbjct: 82  NLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113


>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
          Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
          Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
          Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
          Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
          Peptide-Ligand (Hsp90 Peptide)
          Length = 125

 Score = 29.3 bits (64), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 23/36 (63%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
          NLG+   K   Y++A+E++++AL + P  AS +  +
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNL 49



 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80
          NLG+   K   Y++A+E++++AL + P  A  +
Sbjct: 48 NLGNAYYKQGDYQKAIEYYQKALELDPNNAKAW 80


>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
          With A Peptide Substrate
 pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
          With A Peptide Substrate
 pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
          With A Peptide Substrate
 pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
          With A Peptide Substrate
 pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
          With A Peptide Substrate
 pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
          With A Peptide Substrate
 pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site
          Of Human O- Glcnac Transferase
 pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site
          Of Human O- Glcnac Transferase
 pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
          Glycopeptide
 pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
          Glycopeptide
 pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
          Glycopeptide
 pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
          Glycopeptide
 pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
          Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
          Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
          Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
          Udp-5sglcnac And Substrate Peptide
 pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In
          Complex With Udp And A Glycopeptide
 pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In
          Complex With Udp And A Glycopeptide
 pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
          Udp-5sglcnac And A Peptide Substrate
 pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
          Udp-5sglcnac And A Peptide Substrate
 pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
          And A Thioglycopeptide
 pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
          And A Thioglycopeptide
 pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
          Udp-Glcnac
 pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
          Udp-Glcnac
 pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
          Udp-Glcnac
 pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
          Udp-Glcnac
 pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
          Udp-5sglcnac
 pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
          Udp-5sglcnac
 pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
          Udp-5sglcnac
 pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
          Udp-5sglcnac
          Length = 723

 Score = 28.9 bits (63), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIVVKEGVL 90
          LNNL ++ R+    EEA+  +++AL V P  A   S    ++ ++G L
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 59


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 46  LNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIVVKEGVL 90
           LNNL ++ R+    EEA+  +++AL V P  A   S    ++ ++G L
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355



 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 38 IADKWEPLL----NNLGHVNRKLKKYEEALEFHKQALVVAP 74
          +A K  PLL    +NLG+V ++  + +EA+E ++ AL + P
Sbjct: 58 LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98


>pdb|3RYD|A Chain A, Crystal Strucutre Of Ca Bound Impase Family Protein From
           Staphylococcus Aureus
 pdb|3RYD|C Chain C, Crystal Strucutre Of Ca Bound Impase Family Protein From
           Staphylococcus Aureus
          Length = 273

 Score = 25.8 bits (55), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 1   MDLDNVELSSDKSFSYTVAENCFMEALSKVK-QLGGEI 37
           M+LD V+   D SFSY +   C ++++   K Q G  I
Sbjct: 172 MNLDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHI 209


>pdb|3QMF|A Chain A, Crystal Strucuture Of An Inositol Monophosphatase Family
           Protein (Sas2203) From Staphylococcus Aureus Mssa476
 pdb|3QMF|B Chain B, Crystal Strucuture Of An Inositol Monophosphatase Family
           Protein (Sas2203) From Staphylococcus Aureus Mssa476
          Length = 273

 Score = 25.8 bits (55), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 1   MDLDNVELSSDKSFSYTVAENCFMEALSKVK-QLGGEI 37
           M+LD V+   D SFSY +   C ++++   K Q G  I
Sbjct: 172 MNLDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHI 209


>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
          Length = 340

 Score = 25.8 bits (55), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 4   DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEAL 63
           D  E   D   +   A + + E LS V  LG      +      NLG+ +  L  + +A+
Sbjct: 149 DTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGR---AFGNLGNTHYLLGNFRDAV 205

Query: 64  EFHKQALVVA 73
             H+Q L++A
Sbjct: 206 IAHEQRLLIA 215


>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
          Length = 338

 Score = 25.8 bits (55), Expect = 7.0,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 4   DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEAL 63
           D  E   D   +   A + + E LS V  LG      +      NLG+ +  L  + +A+
Sbjct: 147 DTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGR---AFGNLGNTHYLLGNFRDAV 203

Query: 64  EFHKQALVVA 73
             H+Q L++A
Sbjct: 204 IAHEQRLLIA 213


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,372,838
Number of Sequences: 62578
Number of extensions: 75756
Number of successful extensions: 262
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 34
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)