BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8498
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16
PE=1 SV=2
Length = 620
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
+ AE F++AL K+K +G E+ DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P
Sbjct: 418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 477
Query: 76 KASTFCCI 83
AST+ I
Sbjct: 478 NASTYSAI 485
>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16
PE=2 SV=1
Length = 620
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
+ AE F++AL K+K +G E+ DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P
Sbjct: 418 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 477
Query: 76 KASTFCCI 83
AST+ I
Sbjct: 478 NASTYSAI 485
>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana
GN=APC6 PE=2 SV=1
Length = 543
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 38 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80
+ + WEP + NL H RKL+K EA+ ++++AL ++ ST+
Sbjct: 445 LTESWEPTVVNLAHAYRKLRKDREAISYYERALTLSTKSLSTY 487
>sp|Q1ZXE6|CDC16_DICDI Anaphase-promoting complex subunit 6 OS=Dictyostelium discoideum
GN=anapc6 PE=3 SV=1
Length = 865
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 40 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
+ WEP + NL H RKL+K+E AL ++ +L + P ST+ +
Sbjct: 777 ESWEPTIYNLAHCYRKLRKFELALHYYTMSLSLLPNNPSTYSAL 820
>sp|P41889|CUT9_SCHPO Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cut9 PE=1 SV=2
Length = 671
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78
A N F AL VK+ W NLGH RKLK Y+ A++ Q L+++ A+
Sbjct: 494 AINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551
Query: 79 TFCCIVV 85
I +
Sbjct: 552 VHTAIAL 558
>sp|Q80XJ3|TTC28_MOUSE Tetratricopeptide repeat protein 28 OS=Mus musculus GN=Ttc28 PE=2
SV=2
Length = 1691
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 23 FMEALSKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
F + L+ ++QL G E + D+ NLG L YEEA+++++Q L VA
Sbjct: 92 FEQQLAMLQQLSGNESVLDRGRAY-GNLGDCYEALGDYEEAIKYYEQYLSVA 142
>sp|Q9LV72|GLR12_ARATH Glutamate receptor 1.2 OS=Arabidopsis thaliana GN=GLR1.2 PE=2 SV=1
Length = 867
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLG--------GEIIADKWEPLLNNLG 50
+NV + S +FS T +E+ M+ L ++K LG E+IA + P LG
Sbjct: 198 NNVHVQSKVAFSVTSSEDSLMDRLRELKDLGTTVFVVHLSEVIATRLFPCAEKLG 252
>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Solanum
lycopersicum GN=SPY PE=2 SV=1
Length = 931
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 15 SYTVAENCFMEALSKVK---QLGGEI------------IADKWEPLLNNLGHVNRKLKKY 59
SYT A C L+ + +L G I + P NLG V ++ +Y
Sbjct: 148 SYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQY 207
Query: 60 EEALEFHKQALVVAPMKASTFCCIVV 85
+ AL +++A + PM A +C + V
Sbjct: 208 DMALNCYEKAALERPMYAEAYCNMGV 233
>sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1
SV=4
Length = 2481
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 23 FMEALSKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
F + L+ ++QL G E + D+ NLG L YEEA+++++Q L VA
Sbjct: 857 FEQQLAMLQQLSGNESVLDRGRAY-GNLGDCYEALGDYEEAIKYYEQYLSVA 907
>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Petunia
hybrida GN=SPY PE=2 SV=1
Length = 932
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 38 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
I + P NLG V ++ +Y+ AL +++A + PM A +C
Sbjct: 186 IDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYC 229
>sp|P38992|SUR2_YEAST Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SUR2 PE=1 SV=1
Length = 349
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 23 FMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY 59
+M +S +K G + D W+ L+ L H+N+ L K+
Sbjct: 152 YMYGMSALKIFAGFLFVDTWQYFLHRLMHMNKTLYKW 188
>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis
thaliana GN=SPY PE=1 SV=1
Length = 914
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 38 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
I + P NLG V ++ +Y+ AL +++A + PM A +C
Sbjct: 181 IDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYC 224
>sp|Q9LXF4|PP384_ARATH Pentatricopeptide repeat-containing protein At5g15280
OS=Arabidopsis thaliana GN=At5g15280 PE=2 SV=1
Length = 1227
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 15 SYTVAENCF--MEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK---YEEALEFHKQA 69
+YT CF E L+ + + G D W P LN+ G + L + EE ++ ++
Sbjct: 636 TYTSLIRCFCKKETLNDLLNVWGAAQNDNWLPDLNDCGDLWNCLVRKGLVEEVVQLFERV 695
Query: 70 LVVAPMKASTFCCIVVKE 87
+ P+ S C I V++
Sbjct: 696 FISYPLSQSEACRIFVEK 713
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,898,833
Number of Sequences: 539616
Number of extensions: 976902
Number of successful extensions: 3327
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3302
Number of HSP's gapped (non-prelim): 37
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)