Query psy8498
Match_columns 90
No_of_seqs 100 out of 1768
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 20:27:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13414 TPR_11: TPR repeat; P 99.6 6.2E-15 1.3E-19 73.9 7.0 63 3-74 6-69 (69)
2 PF13424 TPR_12: Tetratricopep 99.6 1.4E-14 3.1E-19 74.2 8.4 70 2-73 7-76 (78)
3 PRK15359 type III secretion sy 99.5 5E-14 1.1E-18 80.1 7.7 73 5-86 63-135 (144)
4 PRK15359 type III secretion sy 99.5 1.2E-13 2.6E-18 78.5 8.7 77 4-89 28-104 (144)
5 KOG1173|consensus 99.5 7.4E-14 1.6E-18 92.0 8.0 86 3-90 417-502 (611)
6 PRK15363 pathogenicity island 99.5 3.4E-13 7.3E-18 77.2 9.1 77 4-89 39-115 (157)
7 KOG4626|consensus 99.5 6.9E-14 1.5E-18 93.7 6.8 76 3-87 391-466 (966)
8 PF13432 TPR_16: Tetratricopep 99.5 1E-13 2.2E-18 68.8 5.8 64 5-77 2-65 (65)
9 KOG4626|consensus 99.5 1.8E-13 3.9E-18 91.8 7.3 78 2-88 356-433 (966)
10 CHL00033 ycf3 photosystem I as 99.4 5.6E-12 1.2E-16 73.0 8.9 81 2-88 37-117 (168)
11 PRK11189 lipoprotein NlpI; Pro 99.4 6.3E-12 1.4E-16 78.7 9.2 77 3-88 67-143 (296)
12 PRK02603 photosystem I assembl 99.4 1.4E-11 3.1E-16 71.6 10.0 80 3-88 38-117 (172)
13 PF13371 TPR_9: Tetratricopept 99.4 1.6E-11 3.5E-16 62.0 8.0 71 6-85 1-71 (73)
14 TIGR02552 LcrH_SycD type III s 99.3 2E-11 4.3E-16 68.1 8.8 78 3-89 20-97 (135)
15 COG3063 PilF Tfp pilus assembl 99.3 2.2E-11 4.7E-16 73.4 8.3 76 4-88 39-114 (250)
16 PLN03088 SGT1, suppressor of 99.3 3.3E-11 7.1E-16 77.3 9.1 76 3-87 39-114 (356)
17 PF14559 TPR_19: Tetratricopep 99.3 1.8E-11 3.9E-16 61.0 6.1 66 11-85 2-67 (68)
18 KOG0553|consensus 99.3 6.1E-11 1.3E-15 73.6 8.6 73 5-86 120-192 (304)
19 PLN03088 SGT1, suppressor of 99.3 7.7E-11 1.7E-15 75.6 9.4 78 3-89 5-82 (356)
20 PRK10370 formate-dependent nit 99.3 1E-10 2.2E-15 69.7 8.9 77 3-88 76-155 (198)
21 cd00189 TPR Tetratricopeptide 99.3 1.3E-10 2.9E-15 59.3 8.3 78 2-88 2-79 (100)
22 COG3063 PilF Tfp pilus assembl 99.2 3.1E-11 6.8E-16 72.7 6.4 76 3-87 72-149 (250)
23 KOG0553|consensus 99.2 5.1E-11 1.1E-15 73.9 7.3 78 3-89 84-161 (304)
24 PRK09782 bacteriophage N4 rece 99.2 1.3E-10 2.8E-15 82.3 9.3 78 3-89 612-689 (987)
25 TIGR00990 3a0801s09 mitochondr 99.2 1.6E-10 3.5E-15 78.3 9.2 42 46-87 402-443 (615)
26 PRK15363 pathogenicity island 99.2 1.9E-10 4.2E-15 66.0 7.4 63 3-74 72-134 (157)
27 TIGR02521 type_IV_pilW type IV 99.2 5.3E-10 1.1E-14 66.0 9.6 77 3-88 34-110 (234)
28 PRK11189 lipoprotein NlpI; Pro 99.2 3.3E-10 7.2E-15 71.0 9.1 68 2-78 100-167 (296)
29 TIGR00990 3a0801s09 mitochondr 99.2 2.7E-10 5.9E-15 77.2 9.2 77 3-88 402-478 (615)
30 TIGR02795 tol_pal_ybgF tol-pal 99.2 7.4E-10 1.6E-14 60.0 9.2 80 3-88 5-87 (119)
31 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 2.4E-10 5.3E-15 74.5 6.9 65 2-72 77-141 (453)
32 KOG1126|consensus 99.1 1.1E-10 2.4E-15 78.3 5.4 78 2-88 491-568 (638)
33 COG5010 TadD Flp pilus assembl 99.1 4.5E-10 9.8E-15 68.6 7.5 76 5-89 105-180 (257)
34 TIGR02552 LcrH_SycD type III s 99.1 7.1E-10 1.5E-14 61.7 7.6 68 3-79 54-121 (135)
35 PRK12370 invasion protein regu 99.1 9.2E-10 2E-14 74.0 9.2 73 3-84 341-413 (553)
36 KOG1125|consensus 99.1 9.2E-11 2E-15 77.8 4.1 76 4-88 434-509 (579)
37 KOG1173|consensus 99.1 7.5E-10 1.6E-14 73.6 8.0 74 2-84 457-530 (611)
38 KOG1155|consensus 99.1 3.8E-10 8.3E-15 73.7 6.2 76 6-90 336-411 (559)
39 PF12895 Apc3: Anaphase-promot 99.0 1.1E-09 2.4E-14 56.7 6.0 70 12-89 1-70 (84)
40 TIGR03302 OM_YfiO outer membra 99.0 3E-09 6.4E-14 64.3 8.4 80 3-88 36-118 (235)
41 KOG0543|consensus 99.0 1.9E-09 4.1E-14 69.3 7.7 76 2-86 259-334 (397)
42 PF13414 TPR_11: TPR repeat; P 99.0 1.7E-09 3.6E-14 53.9 5.9 46 44-89 4-49 (69)
43 PRK15174 Vi polysaccharide exp 99.0 3.1E-09 6.6E-14 72.9 8.9 76 4-88 250-329 (656)
44 PRK09782 bacteriophage N4 rece 99.0 2.7E-09 5.8E-14 75.8 8.5 77 2-87 645-721 (987)
45 TIGR02795 tol_pal_ybgF tol-pal 99.0 8.1E-09 1.8E-13 55.9 8.5 73 3-81 42-114 (119)
46 PRK12370 invasion protein regu 99.0 3.5E-09 7.5E-14 71.3 8.3 67 14-89 318-384 (553)
47 PRK15179 Vi polysaccharide bio 99.0 4.8E-09 1E-13 72.2 8.7 76 3-87 89-164 (694)
48 KOG4555|consensus 99.0 1.5E-08 3.2E-13 57.0 8.4 77 4-89 47-127 (175)
49 PRK15179 Vi polysaccharide bio 99.0 7E-09 1.5E-13 71.4 8.6 78 2-88 122-199 (694)
50 KOG1126|consensus 98.9 4.9E-10 1.1E-14 75.3 2.8 86 3-88 424-534 (638)
51 TIGR02521 type_IV_pilW type IV 98.9 1.9E-08 4.2E-13 59.3 9.3 78 3-87 102-179 (234)
52 PRK15331 chaperone protein Sic 98.9 1E-08 2.2E-13 59.3 7.6 77 5-90 42-118 (165)
53 KOG1840|consensus 98.9 1.4E-08 3E-13 67.8 9.2 70 3-73 244-313 (508)
54 PRK02603 photosystem I assembl 98.9 2.1E-08 4.5E-13 58.4 8.7 66 2-76 74-153 (172)
55 PF12895 Apc3: Anaphase-promot 98.9 7.9E-09 1.7E-13 53.5 6.2 57 3-69 28-84 (84)
56 PF13429 TPR_15: Tetratricopep 98.9 2.4E-08 5.1E-13 61.9 9.3 87 3-89 149-260 (280)
57 PF13428 TPR_14: Tetratricopep 98.9 6.3E-09 1.4E-13 47.8 5.1 42 45-86 3-44 (44)
58 KOG1840|consensus 98.9 2.2E-08 4.7E-13 66.8 9.5 85 3-88 202-294 (508)
59 PF00515 TPR_1: Tetratricopept 98.9 4.9E-09 1.1E-13 45.4 4.5 33 44-76 2-34 (34)
60 PRK15174 Vi polysaccharide exp 98.9 1.5E-08 3.2E-13 69.5 8.9 78 2-88 78-155 (656)
61 PF12688 TPR_5: Tetratrico pep 98.9 4.7E-08 1E-12 54.1 9.3 67 3-75 4-70 (120)
62 KOG0543|consensus 98.9 2E-08 4.3E-13 64.7 8.7 86 5-90 213-304 (397)
63 PRK11447 cellulose synthase su 98.9 1.8E-08 4E-13 72.6 9.4 74 5-87 356-429 (1157)
64 PRK10370 formate-dependent nit 98.9 1.3E-08 2.8E-13 60.7 7.1 66 13-87 52-117 (198)
65 TIGR02917 PEP_TPR_lipo putativ 98.9 2.2E-08 4.8E-13 68.7 8.5 86 3-88 773-882 (899)
66 PF07719 TPR_2: Tetratricopept 98.9 1.4E-08 3E-13 43.8 5.0 33 44-76 2-34 (34)
67 KOG0547|consensus 98.8 1.1E-08 2.5E-13 67.5 6.3 78 3-89 118-195 (606)
68 PRK10803 tol-pal system protei 98.8 7.6E-08 1.6E-12 59.7 9.5 77 6-88 148-228 (263)
69 TIGR02917 PEP_TPR_lipo putativ 98.8 4.3E-08 9.4E-13 67.3 9.3 74 6-88 742-815 (899)
70 CHL00033 ycf3 photosystem I as 98.8 3.8E-08 8.3E-13 57.0 7.8 65 2-75 74-152 (168)
71 PRK11788 tetratricopeptide rep 98.8 7.7E-08 1.7E-12 61.7 9.3 60 6-74 186-245 (389)
72 KOG0548|consensus 98.8 3.1E-08 6.8E-13 65.6 7.3 75 5-88 363-437 (539)
73 PRK10803 tol-pal system protei 98.8 1.1E-07 2.4E-12 59.0 9.3 72 3-80 183-254 (263)
74 PRK11788 tetratricopeptide rep 98.8 6.2E-08 1.3E-12 62.1 8.4 81 4-88 145-225 (389)
75 KOG1129|consensus 98.8 8.4E-09 1.8E-13 65.6 4.3 79 3-87 361-439 (478)
76 PRK11447 cellulose synthase su 98.8 7.5E-08 1.6E-12 69.5 9.4 75 4-87 465-539 (1157)
77 cd00189 TPR Tetratricopeptide 98.8 3.5E-08 7.6E-13 50.1 5.9 63 3-74 37-99 (100)
78 KOG1155|consensus 98.8 5.8E-08 1.3E-12 63.8 7.6 82 2-88 366-477 (559)
79 PRK10866 outer membrane biogen 98.8 1.6E-07 3.5E-12 57.6 9.2 77 5-87 37-116 (243)
80 COG5010 TadD Flp pilus assembl 98.8 1.3E-07 2.7E-12 58.0 8.6 78 3-89 137-214 (257)
81 PF13525 YfiO: Outer membrane 98.8 2.1E-07 4.5E-12 55.6 9.4 80 3-88 8-90 (203)
82 PF13512 TPR_18: Tetratricopep 98.8 1.5E-07 3.3E-12 53.3 8.3 79 3-87 13-94 (142)
83 KOG2002|consensus 98.7 9.7E-08 2.1E-12 66.9 8.4 79 3-88 683-761 (1018)
84 COG1729 Uncharacterized protei 98.7 1.7E-07 3.8E-12 57.8 8.5 80 4-89 145-227 (262)
85 KOG0548|consensus 98.7 7.9E-08 1.7E-12 63.8 7.3 88 3-90 301-405 (539)
86 PRK10049 pgaA outer membrane p 98.7 1.9E-07 4.1E-12 65.2 9.1 79 3-87 52-160 (765)
87 cd05804 StaR_like StaR_like; a 98.7 1.7E-07 3.7E-12 59.5 8.2 75 4-87 118-196 (355)
88 PRK10049 pgaA outer membrane p 98.7 2.3E-07 5E-12 64.7 9.1 75 4-87 363-437 (765)
89 TIGR03302 OM_YfiO outer membra 98.7 4.2E-07 9E-12 54.9 8.8 71 3-79 73-151 (235)
90 KOG4234|consensus 98.6 2.9E-07 6.4E-12 55.2 6.8 79 6-88 101-179 (271)
91 PF13429 TPR_15: Tetratricopep 98.6 7.4E-07 1.6E-11 55.3 8.7 77 5-88 115-191 (280)
92 KOG0550|consensus 98.6 9.2E-08 2E-12 62.2 4.6 78 7-89 256-333 (486)
93 PF14938 SNAP: Soluble NSF att 98.6 8.1E-07 1.7E-11 55.5 8.7 68 3-73 117-185 (282)
94 PRK10153 DNA-binding transcrip 98.6 4.4E-07 9.5E-12 61.0 7.9 66 4-79 424-489 (517)
95 PLN02789 farnesyltranstransfer 98.6 8.6E-07 1.9E-11 56.5 8.7 76 3-87 109-186 (320)
96 PF13176 TPR_7: Tetratricopept 98.6 2.1E-07 4.4E-12 40.9 4.0 32 2-33 1-32 (36)
97 KOG2003|consensus 98.5 1.1E-06 2.4E-11 58.3 8.9 76 3-87 527-602 (840)
98 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4E-07 8.7E-12 59.8 6.7 49 42-90 74-125 (453)
99 KOG1125|consensus 98.5 7.9E-07 1.7E-11 59.6 8.1 76 4-88 289-364 (579)
100 PF13181 TPR_8: Tetratricopept 98.5 2.8E-07 6E-12 39.7 4.1 31 45-75 3-33 (34)
101 COG4783 Putative Zn-dependent 98.5 1.1E-06 2.3E-11 58.0 8.3 77 5-90 345-421 (484)
102 PF13424 TPR_12: Tetratricopep 98.5 2.8E-07 6.1E-12 46.9 4.6 47 43-89 5-58 (78)
103 KOG0547|consensus 98.5 4.1E-07 8.9E-12 60.4 6.2 76 3-87 363-438 (606)
104 KOG2002|consensus 98.5 5.9E-07 1.3E-11 63.2 7.1 79 3-89 310-388 (1018)
105 PRK15331 chaperone protein Sic 98.5 6.9E-07 1.5E-11 51.8 6.3 65 4-78 75-139 (165)
106 PF13431 TPR_17: Tetratricopep 98.5 1E-07 2.2E-12 41.5 2.2 33 22-63 1-33 (34)
107 PF13176 TPR_7: Tetratricopept 98.5 3.7E-07 8.1E-12 40.1 4.0 28 46-73 2-29 (36)
108 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.5E-06 5.5E-11 55.7 8.8 77 5-90 205-281 (395)
109 PF13432 TPR_16: Tetratricopep 98.5 6.3E-07 1.4E-11 44.0 4.8 42 48-89 2-43 (65)
110 PF14938 SNAP: Soluble NSF att 98.5 1.1E-06 2.3E-11 55.0 6.8 67 3-73 78-145 (282)
111 COG4235 Cytochrome c biogenesi 98.5 3E-06 6.5E-11 53.0 8.6 74 3-85 159-235 (287)
112 PF00515 TPR_1: Tetratricopept 98.5 2.8E-07 6.1E-12 39.7 3.0 31 2-32 3-33 (34)
113 KOG1130|consensus 98.4 1.5E-06 3.2E-11 57.1 7.2 84 2-88 237-326 (639)
114 KOG2003|consensus 98.4 4E-07 8.6E-12 60.4 4.7 80 2-90 492-571 (840)
115 KOG1129|consensus 98.4 2.3E-07 5.1E-12 59.2 3.3 85 3-87 293-405 (478)
116 PF09976 TPR_21: Tetratricopep 98.4 3.8E-06 8.2E-11 47.6 7.5 78 4-88 52-129 (145)
117 KOG2076|consensus 98.4 3E-06 6.5E-11 59.3 7.8 79 3-89 417-495 (895)
118 KOG3060|consensus 98.4 3.7E-06 8E-11 51.9 7.2 76 2-86 156-234 (289)
119 PF06552 TOM20_plant: Plant sp 98.3 6.3E-06 1.4E-10 48.5 7.7 60 16-84 51-121 (186)
120 PF07719 TPR_2: Tetratricopept 98.3 6.8E-07 1.5E-11 38.3 2.9 30 3-32 4-33 (34)
121 PLN02789 farnesyltranstransfer 98.3 7.7E-06 1.7E-10 52.2 8.4 69 9-86 46-115 (320)
122 PRK14720 transcript cleavage f 98.3 4E-06 8.7E-11 59.4 7.6 45 45-89 118-162 (906)
123 KOG4648|consensus 98.3 8.8E-07 1.9E-11 57.0 4.0 30 4-33 101-130 (536)
124 COG1729 Uncharacterized protei 98.3 7.1E-06 1.5E-10 50.8 7.7 73 3-81 181-253 (262)
125 PF13428 TPR_14: Tetratricopep 98.3 1.6E-06 3.5E-11 39.6 3.8 31 3-33 4-34 (44)
126 KOG4234|consensus 98.3 8.4E-06 1.8E-10 49.1 7.6 72 3-83 137-208 (271)
127 PRK14574 hmsH outer membrane p 98.3 6.1E-06 1.3E-10 58.3 7.9 84 5-88 39-147 (822)
128 KOG4162|consensus 98.3 5.1E-06 1.1E-10 57.5 7.0 73 6-87 690-764 (799)
129 cd05804 StaR_like StaR_like; a 98.3 5.5E-06 1.2E-10 52.6 6.9 67 3-74 151-217 (355)
130 PF12688 TPR_5: Tetratrico pep 98.3 1.1E-05 2.5E-10 44.6 7.2 63 3-71 41-103 (120)
131 KOG1156|consensus 98.3 5.4E-06 1.2E-10 56.5 6.8 74 6-88 47-120 (700)
132 KOG4162|consensus 98.2 3.8E-06 8.2E-11 58.1 6.1 68 2-78 720-789 (799)
133 PRK14720 transcript cleavage f 98.2 4.7E-06 1E-10 59.1 6.7 61 2-72 118-178 (906)
134 KOG0545|consensus 98.2 3.5E-05 7.6E-10 47.7 9.2 86 3-88 181-275 (329)
135 PF13181 TPR_8: Tetratricopept 98.2 3.3E-06 7.1E-11 36.2 3.5 31 2-32 3-33 (34)
136 KOG1128|consensus 98.2 3E-06 6.5E-11 58.3 4.9 71 10-89 495-565 (777)
137 KOG1156|consensus 98.2 5.5E-06 1.2E-10 56.5 5.8 78 3-89 78-155 (700)
138 KOG0551|consensus 98.2 1.4E-05 3.1E-10 51.0 7.1 79 5-88 86-164 (390)
139 PF13374 TPR_10: Tetratricopep 98.2 7E-06 1.5E-10 36.5 4.4 31 43-73 2-32 (42)
140 KOG2076|consensus 98.2 3.4E-05 7.3E-10 54.3 9.3 70 5-83 144-213 (895)
141 PF09976 TPR_21: Tetratricopep 98.1 1.2E-05 2.6E-10 45.6 5.9 58 3-70 88-145 (145)
142 KOG1130|consensus 98.1 2.6E-06 5.6E-11 56.0 3.4 69 2-73 197-265 (639)
143 PF13174 TPR_6: Tetratricopept 98.1 9.6E-06 2.1E-10 34.3 4.3 31 45-75 2-32 (33)
144 PF06552 TOM20_plant: Plant sp 98.1 2.9E-05 6.3E-10 45.7 7.3 65 16-89 7-81 (186)
145 PF14853 Fis1_TPR_C: Fis1 C-te 98.1 3.8E-05 8.2E-10 36.6 6.4 37 45-81 3-39 (53)
146 KOG3824|consensus 98.1 9.4E-06 2E-10 51.7 5.4 70 6-84 122-191 (472)
147 KOG4642|consensus 98.1 5.4E-06 1.2E-10 50.9 4.2 74 6-88 16-89 (284)
148 PF12862 Apc5: Anaphase-promot 98.1 8.9E-05 1.9E-09 39.2 8.4 65 10-74 8-72 (94)
149 smart00028 TPR Tetratricopepti 98.1 9.7E-06 2.1E-10 33.2 3.9 31 45-75 3-33 (34)
150 PRK10747 putative protoheme IX 98.1 2.2E-05 4.7E-10 51.3 7.1 60 4-73 332-391 (398)
151 PF13374 TPR_10: Tetratricopep 98.1 8.4E-06 1.8E-10 36.3 3.7 32 2-33 4-35 (42)
152 PRK14574 hmsH outer membrane p 98.1 4.8E-05 1E-09 53.9 8.8 75 5-88 421-495 (822)
153 PF12569 NARP1: NMDA receptor- 98.1 6.6E-05 1.4E-09 50.8 9.0 73 6-87 10-82 (517)
154 PRK10941 hypothetical protein; 98.1 6.9E-05 1.5E-09 46.8 8.5 72 3-83 184-255 (269)
155 TIGR00540 hemY_coli hemY prote 98.1 4E-05 8.6E-10 50.2 7.7 83 5-88 268-381 (409)
156 PRK10747 putative protoheme IX 98.0 9.6E-05 2.1E-09 48.3 9.1 74 7-88 125-198 (398)
157 TIGR00540 hemY_coli hemY prote 98.0 8.7E-05 1.9E-09 48.6 8.8 75 6-88 124-198 (409)
158 PF12569 NARP1: NMDA receptor- 98.0 5.5E-05 1.2E-09 51.1 7.8 64 4-76 198-261 (517)
159 COG4783 Putative Zn-dependent 98.0 8E-05 1.7E-09 49.5 8.2 76 4-88 310-385 (484)
160 KOG0624|consensus 98.0 2.1E-05 4.5E-10 50.8 5.4 67 5-76 43-139 (504)
161 PF14559 TPR_19: Tetratricopep 98.0 2.5E-05 5.4E-10 38.4 4.8 36 54-89 2-37 (68)
162 PF04733 Coatomer_E: Coatomer 98.0 1.9E-05 4.1E-10 49.8 5.2 47 43-89 201-247 (290)
163 KOG1174|consensus 98.0 6.3E-05 1.4E-09 49.6 7.6 70 4-83 442-511 (564)
164 COG4105 ComL DNA uptake lipopr 98.0 6.6E-05 1.4E-09 46.4 7.3 77 4-86 38-117 (254)
165 PF03704 BTAD: Bacterial trans 98.0 9.3E-05 2E-09 41.8 7.4 60 3-71 65-124 (146)
166 KOG1127|consensus 98.0 3.3E-05 7.1E-10 55.2 6.5 71 10-89 12-83 (1238)
167 PF13371 TPR_9: Tetratricopept 98.0 2E-05 4.3E-10 39.3 4.2 41 49-89 1-41 (73)
168 KOG2471|consensus 98.0 3E-05 6.5E-10 52.0 6.0 86 3-88 286-380 (696)
169 PF13431 TPR_17: Tetratricopep 97.9 1.6E-05 3.5E-10 34.4 2.6 25 65-89 1-25 (34)
170 PF13174 TPR_6: Tetratricopept 97.9 1.4E-05 2.9E-10 33.8 2.4 31 2-32 2-32 (33)
171 PRK11906 transcriptional regul 97.9 6.8E-05 1.5E-09 49.7 6.4 65 3-76 341-405 (458)
172 PF13512 TPR_18: Tetratricopep 97.9 0.00023 5E-09 40.5 7.6 69 3-77 50-133 (142)
173 PF12968 DUF3856: Domain of Un 97.8 0.00084 1.8E-08 37.4 9.0 68 5-72 60-129 (144)
174 KOG1941|consensus 97.8 0.00028 6E-09 46.1 8.1 69 2-73 208-276 (518)
175 KOG4555|consensus 97.8 0.00025 5.4E-09 40.2 6.9 69 1-74 78-146 (175)
176 PF04733 Coatomer_E: Coatomer 97.8 5.3E-05 1.1E-09 47.8 4.5 68 3-79 204-272 (290)
177 KOG3060|consensus 97.8 0.00037 8.1E-09 43.3 8.0 77 7-87 93-198 (289)
178 KOG1127|consensus 97.8 4E-05 8.7E-10 54.8 4.3 76 3-87 565-640 (1238)
179 COG4235 Cytochrome c biogenesi 97.8 0.00027 5.8E-09 44.5 7.3 62 17-87 139-200 (287)
180 PF10300 DUF3808: Protein of u 97.8 0.00043 9.3E-09 46.4 8.7 80 5-89 272-352 (468)
181 COG4976 Predicted methyltransf 97.7 9.7E-05 2.1E-09 45.3 5.0 60 8-76 3-62 (287)
182 PRK10866 outer membrane biogen 97.7 0.00059 1.3E-08 42.0 8.5 68 3-76 72-157 (243)
183 KOG0550|consensus 97.7 0.00023 5E-09 46.8 6.8 63 3-74 290-352 (486)
184 KOG2376|consensus 97.7 0.00076 1.6E-08 46.1 9.3 75 3-77 178-258 (652)
185 PF13525 YfiO: Outer membrane 97.7 0.00056 1.2E-08 40.9 7.9 69 3-77 45-124 (203)
186 PF09986 DUF2225: Uncharacteri 97.7 0.0019 4.2E-08 39.2 10.2 71 3-73 121-195 (214)
187 PRK11906 transcriptional regul 97.7 0.00031 6.7E-09 46.7 6.9 66 14-88 318-383 (458)
188 KOG1941|consensus 97.7 0.00049 1.1E-08 45.0 7.6 70 4-73 166-236 (518)
189 COG4785 NlpI Lipoprotein NlpI, 97.6 0.00014 3.1E-09 44.5 4.6 71 6-85 71-141 (297)
190 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.00035 7.6E-09 45.9 6.4 56 3-67 237-292 (395)
191 COG2956 Predicted N-acetylgluc 97.6 0.00053 1.2E-08 44.0 6.7 28 47-74 218-245 (389)
192 smart00028 TPR Tetratricopepti 97.6 7.8E-05 1.7E-09 30.3 2.2 30 2-31 3-32 (34)
193 PRK04841 transcriptional regul 97.5 0.0012 2.6E-08 46.9 8.7 68 3-73 494-561 (903)
194 KOG1128|consensus 97.5 0.00017 3.7E-09 50.1 4.2 68 2-78 521-588 (777)
195 PF03704 BTAD: Bacterial trans 97.5 0.0046 1E-07 34.8 9.5 81 7-87 13-106 (146)
196 PRK04841 transcriptional regul 97.5 0.0018 3.9E-08 46.1 9.1 69 4-75 695-763 (903)
197 KOG0624|consensus 97.5 0.00089 1.9E-08 43.6 6.8 71 6-85 313-383 (504)
198 KOG3785|consensus 97.4 0.00048 1E-08 45.0 5.3 69 11-87 33-101 (557)
199 PF10952 DUF2753: Protein of u 97.4 0.0028 6.1E-08 35.4 7.6 67 4-70 5-77 (140)
200 KOG3785|consensus 97.4 0.0021 4.5E-08 42.1 8.1 23 6-28 63-85 (557)
201 COG2956 Predicted N-acetylgluc 97.4 0.0011 2.5E-08 42.6 6.7 79 5-87 146-224 (389)
202 PF04781 DUF627: Protein of un 97.4 0.0038 8.1E-08 34.1 7.7 75 6-86 2-87 (111)
203 PRK10153 DNA-binding transcrip 97.4 0.002 4.3E-08 43.8 7.8 44 44-88 421-464 (517)
204 COG3071 HemY Uncharacterized e 97.3 0.001 2.3E-08 43.4 5.7 60 3-72 331-390 (400)
205 KOG4648|consensus 97.3 0.0042 9E-08 40.6 8.3 69 3-80 134-202 (536)
206 COG4700 Uncharacterized protei 97.2 0.0042 9.2E-08 37.4 7.4 24 5-28 94-117 (251)
207 COG3071 HemY Uncharacterized e 97.2 0.0029 6.2E-08 41.4 7.0 81 7-88 270-372 (400)
208 COG4785 NlpI Lipoprotein NlpI, 97.2 0.00044 9.6E-09 42.4 3.0 67 3-78 102-168 (297)
209 PLN03081 pentatricopeptide (PP 97.2 0.0038 8.1E-08 43.6 7.8 44 45-88 496-539 (697)
210 KOG3364|consensus 97.2 0.0023 4.9E-08 36.3 5.4 58 16-80 51-108 (149)
211 KOG1174|consensus 97.1 0.0039 8.5E-08 41.5 7.2 69 6-83 340-408 (564)
212 KOG0495|consensus 97.1 0.0036 7.9E-08 43.8 7.1 59 13-80 664-722 (913)
213 KOG4340|consensus 97.1 0.0014 3.1E-08 42.0 4.6 60 3-71 147-206 (459)
214 PF10516 SHNi-TPR: SHNi-TPR; 97.1 0.0016 3.5E-08 28.8 3.5 29 45-73 3-31 (38)
215 KOG4340|consensus 97.1 0.0047 1E-07 39.7 6.8 59 11-78 21-79 (459)
216 KOG0545|consensus 97.0 0.0042 9.2E-08 38.8 6.2 67 3-78 233-299 (329)
217 KOG4814|consensus 97.0 0.0057 1.2E-07 42.7 7.4 72 5-79 359-430 (872)
218 KOG1586|consensus 97.0 0.0056 1.2E-07 38.0 6.6 60 11-73 84-144 (288)
219 PF12862 Apc5: Anaphase-promot 97.0 0.0054 1.2E-07 32.3 5.9 35 2-36 43-77 (94)
220 KOG0495|consensus 97.0 0.0053 1.1E-07 43.0 6.8 69 10-88 628-696 (913)
221 KOG0376|consensus 96.9 0.00039 8.5E-09 46.3 1.3 80 5-84 9-113 (476)
222 PF10579 Rapsyn_N: Rapsyn N-te 96.9 0.0061 1.3E-07 31.4 5.3 61 7-73 13-73 (80)
223 PLN03218 maturation of RBCL 1; 96.9 0.018 4E-07 42.4 9.6 25 47-71 583-607 (1060)
224 PF04184 ST7: ST7 protein; In 96.9 0.016 3.4E-07 39.3 8.6 72 16-87 216-305 (539)
225 KOG4507|consensus 96.9 0.0076 1.6E-07 41.8 7.1 39 45-83 678-716 (886)
226 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0021 4.6E-08 30.6 3.2 30 4-33 5-34 (53)
227 PF07721 TPR_4: Tetratricopept 96.9 0.0018 4E-08 26.0 2.6 24 45-68 3-26 (26)
228 PF09613 HrpB1_HrpK: Bacterial 96.8 0.036 7.8E-07 32.3 8.8 77 3-88 13-89 (160)
229 PF11817 Foie-gras_1: Foie gra 96.8 0.024 5.2E-07 35.1 8.4 63 4-69 182-244 (247)
230 PLN03077 Protein ECB2; Provisi 96.8 0.019 4.1E-07 41.1 8.9 42 47-88 661-702 (857)
231 KOG4642|consensus 96.8 0.0086 1.9E-07 37.2 6.0 61 3-72 47-107 (284)
232 KOG2053|consensus 96.8 0.0084 1.8E-07 42.9 6.7 60 7-75 50-109 (932)
233 KOG1308|consensus 96.8 0.00014 3E-09 46.8 -1.7 73 8-89 122-194 (377)
234 KOG1586|consensus 96.7 0.032 6.9E-07 34.7 8.3 68 4-75 38-105 (288)
235 PF10373 EST1_DNA_bind: Est1 D 96.7 0.014 3.1E-07 36.0 7.0 59 19-86 1-59 (278)
236 KOG2796|consensus 96.7 0.017 3.7E-07 36.6 7.1 80 4-86 216-295 (366)
237 COG4700 Uncharacterized protei 96.7 0.025 5.4E-07 34.2 7.4 70 6-85 62-132 (251)
238 PLN03081 pentatricopeptide (PP 96.7 0.017 3.7E-07 40.5 7.8 23 4-26 294-316 (697)
239 KOG0376|consensus 96.6 0.0039 8.4E-08 41.8 4.2 26 50-75 45-70 (476)
240 COG0457 NrfG FOG: TPR repeat [ 96.6 0.039 8.5E-07 31.3 7.9 73 9-87 139-212 (291)
241 COG0457 NrfG FOG: TPR repeat [ 96.6 0.053 1.1E-06 30.8 8.8 71 7-85 174-244 (291)
242 PF08631 SPO22: Meiosis protei 96.5 0.027 5.9E-07 35.3 7.2 61 11-72 4-65 (278)
243 KOG1585|consensus 96.5 0.014 3.1E-07 36.4 5.8 67 3-72 34-100 (308)
244 PLN03218 maturation of RBCL 1; 96.5 0.044 9.6E-07 40.5 9.0 23 47-69 688-710 (1060)
245 PF15015 NYD-SP12_N: Spermatog 96.5 0.025 5.4E-07 37.9 7.0 81 7-87 183-272 (569)
246 PF02259 FAT: FAT domain; Int 96.5 0.087 1.9E-06 33.5 9.5 81 7-87 191-302 (352)
247 PF07720 TPR_3: Tetratricopept 96.5 0.017 3.7E-07 25.2 4.4 30 47-76 5-36 (36)
248 PF10602 RPN7: 26S proteasome 96.3 0.073 1.6E-06 31.4 7.9 66 2-73 38-103 (177)
249 KOG3081|consensus 96.3 0.031 6.6E-07 35.3 6.3 36 47-82 211-246 (299)
250 COG2912 Uncharacterized conser 96.3 0.046 9.9E-07 34.4 7.0 71 3-82 184-254 (269)
251 PF11207 DUF2989: Protein of u 96.2 0.025 5.4E-07 34.1 5.6 52 4-62 145-197 (203)
252 PF07721 TPR_4: Tetratricopept 96.2 0.0071 1.5E-07 24.2 2.4 23 3-25 4-26 (26)
253 PF05843 Suf: Suppressor of fo 96.2 0.044 9.6E-07 34.5 6.8 61 6-75 41-102 (280)
254 KOG1585|consensus 96.1 0.13 2.9E-06 32.3 8.3 68 3-74 74-141 (308)
255 PF09986 DUF2225: Uncharacteri 96.0 0.075 1.6E-06 32.3 7.1 61 10-72 87-147 (214)
256 PF10516 SHNi-TPR: SHNi-TPR; 96.0 0.036 7.7E-07 24.5 4.2 31 3-33 4-34 (38)
257 KOG3081|consensus 96.0 0.056 1.2E-06 34.2 6.4 68 9-87 146-217 (299)
258 COG2976 Uncharacterized protei 95.9 0.067 1.5E-06 32.3 6.4 29 47-75 163-191 (207)
259 KOG2796|consensus 95.9 0.028 6.1E-07 35.7 5.0 63 4-75 256-318 (366)
260 PLN03077 Protein ECB2; Provisi 95.8 0.074 1.6E-06 38.2 7.4 26 3-28 557-582 (857)
261 PRK10941 hypothetical protein; 95.8 0.078 1.7E-06 33.4 6.7 51 40-90 178-228 (269)
262 PF10255 Paf67: RNA polymerase 95.5 0.026 5.6E-07 37.5 3.9 69 2-71 124-192 (404)
263 KOG4507|consensus 95.5 0.022 4.8E-07 39.7 3.6 80 3-90 610-689 (886)
264 PF04184 ST7: ST7 protein; In 95.5 0.097 2.1E-06 35.7 6.5 58 5-69 264-321 (539)
265 PF12968 DUF3856: Domain of Un 95.4 0.22 4.7E-06 28.0 8.1 63 10-72 19-84 (144)
266 PF08631 SPO22: Meiosis protei 95.4 0.35 7.6E-06 30.4 9.6 78 3-80 38-124 (278)
267 TIGR02561 HrpB1_HrpK type III 95.4 0.25 5.4E-06 28.6 7.6 74 5-87 15-88 (153)
268 TIGR03504 FimV_Cterm FimV C-te 95.4 0.043 9.2E-07 25.1 3.4 25 4-28 3-27 (44)
269 PF00244 14-3-3: 14-3-3 protei 95.4 0.23 4.9E-06 30.7 7.5 55 17-72 143-198 (236)
270 PF13281 DUF4071: Domain of un 95.3 0.32 6.9E-06 32.2 8.3 81 3-88 144-228 (374)
271 KOG0551|consensus 95.2 0.067 1.5E-06 34.8 4.9 63 3-74 122-184 (390)
272 PF12854 PPR_1: PPR repeat 95.2 0.075 1.6E-06 22.6 3.7 26 43-68 7-32 (34)
273 COG3629 DnrI DNA-binding trans 95.0 0.17 3.6E-06 32.2 6.2 60 3-71 156-215 (280)
274 PF10602 RPN7: 26S proteasome 94.9 0.41 8.8E-06 28.3 7.5 52 20-74 16-67 (177)
275 PF04910 Tcf25: Transcriptiona 94.8 0.68 1.5E-05 30.4 9.6 77 2-78 42-139 (360)
276 KOG3783|consensus 94.7 0.47 1E-05 32.7 8.0 67 6-74 455-522 (546)
277 PF11817 Foie-gras_1: Foie gra 94.6 0.4 8.7E-06 29.7 7.2 52 18-72 156-207 (247)
278 KOG1550|consensus 94.6 0.37 8E-06 33.3 7.6 73 3-88 291-371 (552)
279 PF10300 DUF3808: Protein of u 94.6 0.22 4.7E-06 33.8 6.4 67 13-88 246-316 (468)
280 TIGR03504 FimV_Cterm FimV C-te 94.6 0.11 2.4E-06 23.7 3.5 26 47-72 3-28 (44)
281 cd02681 MIT_calpain7_1 MIT: do 94.6 0.11 2.4E-06 26.5 3.9 29 4-32 10-38 (76)
282 COG2976 Uncharacterized protei 94.6 0.34 7.4E-06 29.3 6.4 59 5-69 94-152 (207)
283 COG2909 MalT ATP-dependent tra 94.5 0.23 5E-06 36.0 6.4 64 7-74 465-528 (894)
284 PF04212 MIT: MIT (microtubule 94.4 0.15 3.1E-06 25.3 4.1 31 3-33 8-38 (69)
285 PF14561 TPR_20: Tetratricopep 94.3 0.38 8.1E-06 25.3 5.9 48 19-75 7-54 (90)
286 PF07720 TPR_3: Tetratricopept 94.3 0.13 2.9E-06 22.3 3.3 28 3-30 4-33 (36)
287 cd02682 MIT_AAA_Arch MIT: doma 94.2 0.18 4E-06 25.7 4.2 30 4-33 10-39 (75)
288 KOG2709|consensus 94.2 0.27 5.9E-06 33.1 5.9 65 2-70 24-95 (560)
289 KOG2581|consensus 94.1 0.3 6.4E-06 32.8 5.9 65 7-76 216-280 (493)
290 KOG2610|consensus 94.1 0.32 6.9E-06 32.1 6.0 82 7-88 110-220 (491)
291 COG4105 ComL DNA uptake lipopr 94.0 0.45 9.9E-06 29.8 6.4 63 5-74 172-234 (254)
292 KOG1550|consensus 94.0 0.68 1.5E-05 32.1 7.9 78 4-87 248-335 (552)
293 cd02679 MIT_spastin MIT: domai 93.9 0.29 6.3E-06 25.2 4.6 26 47-72 12-37 (79)
294 cd02679 MIT_spastin MIT: domai 93.8 0.13 2.8E-06 26.5 3.2 31 3-33 11-41 (79)
295 smart00101 14_3_3 14-3-3 homol 93.8 0.89 1.9E-05 28.4 7.4 56 16-72 144-200 (244)
296 cd02683 MIT_1 MIT: domain cont 93.6 0.22 4.7E-06 25.5 3.9 29 5-33 11-39 (77)
297 cd02680 MIT_calpain7_2 MIT: do 93.6 0.36 7.9E-06 24.6 4.6 17 56-72 19-35 (75)
298 smart00386 HAT HAT (Half-A-TPR 93.3 0.25 5.5E-06 19.8 3.8 28 57-84 1-28 (33)
299 KOG1070|consensus 93.2 1.1 2.5E-05 34.5 8.1 63 4-75 1534-1596(1710)
300 PF05843 Suf: Suppressor of fo 93.0 0.47 1E-05 29.9 5.5 68 5-81 6-74 (280)
301 KOG3824|consensus 93.0 0.59 1.3E-05 30.6 5.9 41 47-87 120-160 (472)
302 PF11846 DUF3366: Domain of un 93.0 0.32 6.9E-06 28.8 4.5 33 43-75 144-176 (193)
303 PF01535 PPR: PPR repeat; Int 92.9 0.28 6E-06 19.6 3.1 27 2-28 2-28 (31)
304 KOG2376|consensus 92.9 2.4 5.2E-05 29.9 9.3 79 9-89 426-504 (652)
305 PF04212 MIT: MIT (microtubule 92.8 0.57 1.2E-05 23.1 4.6 26 47-72 9-34 (69)
306 PF07079 DUF1347: Protein of u 92.4 1.6 3.5E-05 30.0 7.4 51 8-68 470-520 (549)
307 KOG2300|consensus 91.9 0.94 2E-05 31.3 6.0 31 43-73 445-475 (629)
308 KOG1308|consensus 91.7 0.091 2E-06 34.3 1.1 61 5-74 153-213 (377)
309 PF05053 Menin: Menin; InterP 91.7 1.1 2.4E-05 31.3 6.2 51 17-71 296-346 (618)
310 TIGR00756 PPR pentatricopeptid 91.7 0.48 1E-05 19.2 3.7 27 2-28 2-28 (35)
311 cd02682 MIT_AAA_Arch MIT: doma 91.6 0.83 1.8E-05 23.3 4.3 26 47-72 10-35 (75)
312 PF09613 HrpB1_HrpK: Bacterial 91.5 0.6 1.3E-05 27.3 4.3 58 7-74 51-108 (160)
313 smart00745 MIT Microtubule Int 91.3 0.67 1.5E-05 23.3 3.9 29 5-33 13-41 (77)
314 COG3118 Thioredoxin domain-con 91.3 1 2.2E-05 28.9 5.4 53 7-68 141-193 (304)
315 KOG1464|consensus 91.1 1.2 2.5E-05 28.8 5.5 54 13-71 40-93 (440)
316 PHA02537 M terminase endonucle 91.0 1.1 2.4E-05 27.8 5.2 34 43-76 169-211 (230)
317 PRK13184 pknD serine/threonine 90.8 1.1 2.5E-05 33.1 5.9 33 47-79 556-588 (932)
318 cd02656 MIT MIT: domain contai 90.8 0.81 1.8E-05 22.9 3.9 29 5-33 11-39 (75)
319 KOG2471|consensus 90.6 0.79 1.7E-05 31.7 4.7 45 2-55 337-381 (696)
320 KOG2114|consensus 90.5 1.4 3.1E-05 32.2 6.0 50 21-72 348-397 (933)
321 PF15015 NYD-SP12_N: Spermatog 90.4 0.91 2E-05 30.9 4.8 59 4-71 232-290 (569)
322 cd02678 MIT_VPS4 MIT: domain c 90.4 0.93 2E-05 22.8 3.9 29 5-33 11-39 (75)
323 KOG3807|consensus 90.4 2.7 5.8E-05 28.0 6.7 59 16-74 232-306 (556)
324 cd02684 MIT_2 MIT: domain cont 90.3 0.93 2E-05 23.0 3.9 29 5-33 11-39 (75)
325 COG4649 Uncharacterized protei 90.2 2.7 5.9E-05 25.4 7.2 80 4-84 98-207 (221)
326 cd02683 MIT_1 MIT: domain cont 89.9 1.4 3E-05 22.5 4.3 19 53-71 16-34 (77)
327 PF14561 TPR_20: Tetratricopep 89.8 1.8 3.9E-05 22.7 5.3 32 4-35 26-57 (90)
328 COG2912 Uncharacterized conser 89.7 3.7 8E-05 26.1 6.9 48 42-89 180-227 (269)
329 PF02259 FAT: FAT domain; Int 89.5 1.7 3.8E-05 27.6 5.5 64 3-71 149-212 (352)
330 cd02677 MIT_SNX15 MIT: domain 89.3 1.1 2.4E-05 22.8 3.6 29 5-33 11-39 (75)
331 COG3947 Response regulator con 89.1 2.4 5.3E-05 27.6 5.7 56 6-70 285-340 (361)
332 COG3947 Response regulator con 89.0 2 4.4E-05 27.9 5.4 41 46-86 282-322 (361)
333 COG4455 ImpE Protein of avirul 89.0 4 8.7E-05 25.6 7.4 62 6-76 7-68 (273)
334 KOG3617|consensus 89.0 1.1 2.5E-05 33.1 4.6 28 43-70 858-885 (1416)
335 PF04053 Coatomer_WDAD: Coatom 88.9 1.8 4E-05 29.3 5.5 60 5-71 300-375 (443)
336 KOG0546|consensus 88.9 0.33 7.3E-06 31.8 1.9 72 4-84 279-350 (372)
337 smart00745 MIT Microtubule Int 88.9 1.8 3.9E-05 21.7 4.4 23 50-72 15-37 (77)
338 cd02681 MIT_calpain7_1 MIT: do 88.7 2 4.3E-05 21.9 4.3 20 53-72 16-35 (76)
339 KOG2053|consensus 88.6 6 0.00013 29.3 7.9 70 3-82 80-149 (932)
340 KOG2041|consensus 88.5 4.5 9.7E-05 29.6 7.1 58 13-70 747-823 (1189)
341 KOG2300|consensus 88.5 6.6 0.00014 27.4 8.1 61 6-75 373-433 (629)
342 PF13041 PPR_2: PPR repeat fam 87.7 1.7 3.7E-05 19.7 6.1 39 45-83 5-44 (50)
343 KOG2047|consensus 87.6 3.3 7.2E-05 29.8 6.1 64 4-72 391-454 (835)
344 KOG1915|consensus 87.2 4.4 9.5E-05 28.3 6.3 53 12-73 449-501 (677)
345 PF04781 DUF627: Protein of un 87.0 2.5 5.4E-05 23.3 4.3 45 19-72 63-107 (111)
346 COG0790 FOG: TPR repeat, SEL1 86.9 5.6 0.00012 24.8 7.7 75 3-87 112-197 (292)
347 TIGR02561 HrpB1_HrpK type III 86.7 1.9 4.2E-05 25.0 3.9 56 7-72 51-106 (153)
348 KOG2610|consensus 86.3 2.3 5E-05 28.3 4.5 27 7-33 182-208 (491)
349 KOG2396|consensus 86.2 6.2 0.00013 27.5 6.6 58 14-80 119-177 (568)
350 PF13812 PPR_3: Pentatricopept 85.8 1.6 3.5E-05 17.6 3.9 27 45-71 3-29 (34)
351 PF07219 HemY_N: HemY protein 85.8 3.2 6.9E-05 22.4 4.4 25 5-29 64-88 (108)
352 KOG1915|consensus 85.6 4.8 0.0001 28.1 5.9 59 13-80 86-144 (677)
353 KOG3616|consensus 85.6 5.7 0.00012 29.4 6.5 64 3-70 664-733 (1636)
354 COG0790 FOG: TPR repeat, SEL1 85.3 6.9 0.00015 24.4 6.9 62 15-87 92-158 (292)
355 PF10345 Cohesin_load: Cohesin 85.3 11 0.00023 26.6 9.7 64 4-67 365-428 (608)
356 KOG3364|consensus 85.3 1 2.3E-05 25.8 2.4 30 4-33 75-104 (149)
357 PF09205 DUF1955: Domain of un 85.0 5.5 0.00012 23.0 6.9 31 43-73 120-150 (161)
358 KOG1310|consensus 84.9 4.3 9.3E-05 28.7 5.5 19 15-33 389-407 (758)
359 PF02064 MAS20: MAS20 protein 84.7 3 6.4E-05 23.3 4.0 29 47-75 67-95 (121)
360 cd02680 MIT_calpain7_2 MIT: do 84.7 3.8 8.2E-05 20.9 6.2 28 6-33 12-39 (75)
361 smart00671 SEL1 Sel1-like repe 83.0 2.4 5.3E-05 17.4 3.5 27 46-72 4-34 (36)
362 COG5091 SGT1 Suppressor of G2 82.9 7.3 0.00016 25.2 5.5 60 14-76 53-112 (368)
363 PF15469 Sec5: Exocyst complex 82.5 7.8 0.00017 22.8 7.8 72 10-81 96-177 (182)
364 PF08238 Sel1: Sel1 repeat; I 82.4 2.8 6E-05 17.6 4.3 27 46-72 4-37 (39)
365 PRK13184 pknD serine/threonine 82.1 12 0.00026 28.1 7.1 68 5-76 557-624 (932)
366 KOG1839|consensus 81.8 12 0.00026 28.9 7.0 70 2-72 1059-1128(1236)
367 PF04053 Coatomer_WDAD: Coatom 80.7 14 0.00031 25.2 6.7 30 3-32 350-379 (443)
368 PF02064 MAS20: MAS20 protein 80.6 2 4.3E-05 24.0 2.3 29 5-33 68-96 (121)
369 PF08311 Mad3_BUB1_I: Mad3/BUB 79.6 7 0.00015 21.7 4.3 28 43-70 99-126 (126)
370 KOG3617|consensus 79.5 23 0.00051 26.8 7.6 66 5-70 1085-1172(1416)
371 KOG2709|consensus 79.5 3.1 6.8E-05 28.3 3.3 28 45-72 24-51 (560)
372 KOG4814|consensus 79.3 14 0.00031 26.8 6.4 61 3-72 397-457 (872)
373 KOG2047|consensus 79.2 22 0.00048 25.9 7.6 62 8-73 355-417 (835)
374 PF10345 Cohesin_load: Cohesin 77.8 22 0.00048 25.1 8.1 66 5-74 64-130 (608)
375 TIGR00985 3a0801s04tom mitocho 77.3 11 0.00024 21.9 4.7 29 47-75 94-123 (148)
376 PF14863 Alkyl_sulf_dimr: Alky 77.1 11 0.00025 21.5 5.7 42 47-88 74-115 (141)
377 COG3898 Uncharacterized membra 76.6 15 0.00033 25.1 5.7 54 10-72 164-217 (531)
378 KOG2034|consensus 75.3 11 0.00023 28.1 5.0 54 5-70 363-416 (911)
379 KOG2396|consensus 75.1 23 0.00049 24.9 6.3 54 20-82 91-144 (568)
380 KOG4563|consensus 74.9 22 0.00049 23.9 6.1 64 4-68 45-108 (400)
381 KOG1070|consensus 74.4 28 0.00061 27.7 7.1 66 3-75 1567-1632(1710)
382 PF11846 DUF3366: Domain of un 74.0 5.6 0.00012 23.5 3.1 30 3-32 147-176 (193)
383 COG5191 Uncharacterized conser 73.7 9.9 0.00022 25.2 4.3 62 12-81 119-180 (435)
384 PF10579 Rapsyn_N: Rapsyn N-te 73.7 11 0.00023 19.5 5.7 40 47-86 10-49 (80)
385 KOG0686|consensus 72.5 28 0.00061 23.9 6.2 65 2-72 152-216 (466)
386 smart00777 Mad3_BUB1_I Mad3/BU 72.3 9.7 0.00021 21.4 3.6 26 43-68 99-124 (125)
387 PF04910 Tcf25: Transcriptiona 71.7 11 0.00023 25.0 4.2 58 14-72 8-69 (360)
388 PF10366 Vps39_1: Vacuolar sor 70.6 7.6 0.00016 21.1 2.9 26 46-71 42-67 (108)
389 PF10255 Paf67: RNA polymerase 69.8 6.1 0.00013 26.7 2.8 32 3-34 167-198 (404)
390 PF14689 SPOB_a: Sensor_kinase 69.7 11 0.00025 18.2 3.4 25 8-32 31-55 (62)
391 KOG1811|consensus 69.5 39 0.00084 24.7 6.6 47 23-74 572-618 (1141)
392 KOG1310|consensus 69.5 13 0.00027 26.5 4.2 49 17-74 428-476 (758)
393 KOG0686|consensus 68.7 35 0.00076 23.4 7.1 36 40-75 147-182 (466)
394 PF13281 DUF4071: Domain of un 68.7 33 0.00071 23.1 8.8 31 47-77 309-339 (374)
395 COG5187 RPN7 26S proteasome re 68.5 31 0.00068 22.8 7.5 54 17-73 92-145 (412)
396 PF08626 TRAPPC9-Trs120: Trans 68.4 24 0.00052 27.2 5.8 31 4-34 246-276 (1185)
397 KOG0890|consensus 67.9 35 0.00076 28.5 6.6 60 3-73 1673-1732(2382)
398 KOG0546|consensus 67.5 2.8 6E-05 27.8 0.9 85 5-89 227-321 (372)
399 KOG2041|consensus 67.3 13 0.00028 27.5 4.0 66 2-68 798-877 (1189)
400 TIGR00985 3a0801s04tom mitocho 67.1 9.3 0.0002 22.1 2.9 54 15-70 82-135 (148)
401 PF06957 COPI_C: Coatomer (COP 65.6 41 0.00089 23.0 6.2 29 5-33 209-237 (422)
402 PF11207 DUF2989: Protein of u 65.6 29 0.00062 21.3 8.1 45 43-88 141-189 (203)
403 COG3118 Thioredoxin domain-con 65.2 19 0.00041 23.4 4.2 42 47-88 138-179 (304)
404 KOG0687|consensus 65.2 39 0.00084 22.6 7.1 53 17-72 81-133 (393)
405 COG4976 Predicted methyltransf 65.1 4.8 0.0001 25.4 1.5 34 52-85 4-37 (287)
406 COG4941 Predicted RNA polymera 65.0 40 0.00086 22.7 6.5 36 47-82 369-404 (415)
407 PF09670 Cas_Cas02710: CRISPR- 65.0 39 0.00084 22.6 7.5 60 6-72 137-198 (379)
408 KOG4151|consensus 64.6 9.4 0.0002 27.8 3.0 76 7-87 60-137 (748)
409 KOG0687|consensus 64.3 40 0.00088 22.5 7.0 31 3-33 107-137 (393)
410 KOG3677|consensus 63.8 10 0.00022 26.0 2.9 63 3-71 238-300 (525)
411 KOG2908|consensus 63.6 42 0.00091 22.5 7.9 60 9-71 84-143 (380)
412 KOG0739|consensus 63.3 42 0.00091 22.4 6.3 23 10-32 20-42 (439)
413 COG4259 Uncharacterized protei 62.7 24 0.00052 19.4 7.6 34 45-78 74-107 (121)
414 COG3914 Spy Predicted O-linked 62.6 55 0.0012 23.5 7.8 76 4-82 105-181 (620)
415 PF12753 Nro1: Nuclear pore co 62.2 26 0.00057 23.8 4.6 50 19-70 330-382 (404)
416 PF08969 USP8_dimer: USP8 dime 61.6 24 0.00053 19.1 3.9 31 3-33 41-71 (115)
417 KOG3616|consensus 61.3 45 0.00097 25.2 5.8 30 45-74 997-1026(1636)
418 KOG1920|consensus 59.1 87 0.0019 24.6 8.7 66 3-70 955-1026(1265)
419 PF04190 DUF410: Protein of un 58.5 44 0.00095 21.0 7.1 27 43-69 90-116 (260)
420 KOG2581|consensus 58.2 14 0.0003 25.3 2.8 29 5-33 252-280 (493)
421 PF05131 Pep3_Vps18: Pep3/Vps1 57.9 8.9 0.00019 22.1 1.7 19 50-68 110-128 (147)
422 PRK15180 Vi polysaccharide bio 57.4 55 0.0012 23.4 5.5 20 7-26 330-349 (831)
423 KOG0889|consensus 56.3 1.4E+02 0.0031 26.5 8.1 62 7-73 2819-2884(3550)
424 COG5159 RPN6 26S proteasome re 56.2 57 0.0012 21.6 5.7 64 5-69 8-71 (421)
425 COG4649 Uncharacterized protei 55.6 46 0.00099 20.4 6.9 64 10-73 49-124 (221)
426 cd00280 TRFH Telomeric Repeat 55.6 41 0.0009 20.5 4.2 34 49-83 117-150 (200)
427 PF02184 HAT: HAT (Half-A-TPR) 55.2 17 0.00037 15.3 2.5 25 58-83 2-26 (32)
428 KOG3677|consensus 55.0 69 0.0015 22.3 7.5 29 5-33 277-305 (525)
429 KOG0529|consensus 54.3 68 0.0015 22.0 6.5 63 15-86 90-154 (421)
430 KOG2422|consensus 54.1 45 0.00097 24.0 4.7 59 12-70 250-311 (665)
431 KOG4056|consensus 53.1 43 0.00093 19.3 4.4 29 47-75 85-113 (143)
432 KOG0276|consensus 52.9 72 0.0016 23.3 5.6 67 3-69 669-747 (794)
433 TIGR02508 type_III_yscG type I 52.8 22 0.00049 19.5 2.6 20 49-68 74-93 (115)
434 COG2178 Predicted RNA-binding 52.7 52 0.0011 20.2 5.0 58 7-67 36-93 (204)
435 TIGR03362 VI_chp_7 type VI sec 52.2 32 0.00069 22.3 3.7 60 7-72 220-279 (301)
436 KOG0292|consensus 52.1 1.1E+02 0.0023 23.6 6.9 30 50-79 1091-1120(1202)
437 PF09311 Rab5-bind: Rabaptin-l 51.9 32 0.00068 20.5 3.4 32 2-33 142-173 (181)
438 KOG1839|consensus 51.4 69 0.0015 25.2 5.6 70 3-73 1018-1087(1236)
439 KOG1538|consensus 50.8 40 0.00087 24.9 4.2 25 45-69 806-830 (1081)
440 KOG3783|consensus 50.8 89 0.0019 22.3 7.6 62 5-73 272-333 (546)
441 TIGR02710 CRISPR-associated pr 50.5 77 0.0017 21.5 6.1 60 7-68 137-196 (380)
442 KOG0985|consensus 50.5 74 0.0016 25.0 5.6 27 46-72 1223-1249(1666)
443 KOG1914|consensus 50.0 95 0.0021 22.4 6.1 54 10-72 411-464 (656)
444 PF04505 Dispanin: Interferon- 49.0 29 0.00063 17.8 2.6 25 49-73 43-67 (82)
445 KOG2460|consensus 48.8 27 0.00059 24.7 3.1 29 5-33 427-455 (593)
446 KOG4014|consensus 48.8 63 0.0014 20.0 5.1 61 10-73 37-103 (248)
447 PF12739 TRAPPC-Trs85: ER-Golg 48.7 78 0.0017 21.4 5.2 31 43-73 208-238 (414)
448 TIGR00823 EIIA-LAC phosphotran 48.3 43 0.00094 17.9 3.8 23 8-30 25-47 (99)
449 cd00215 PTS_IIA_lac PTS_IIA, P 48.2 43 0.00093 17.9 3.8 24 8-31 23-46 (97)
450 PRK09591 celC cellobiose phosp 47.7 46 0.00099 18.0 3.8 24 8-31 28-51 (104)
451 KOG2561|consensus 47.2 98 0.0021 21.7 6.6 23 49-71 273-295 (568)
452 PF12455 Dynactin: Dynein asso 46.9 75 0.0016 20.3 5.4 66 3-68 150-217 (274)
453 COG1447 CelC Phosphotransferas 46.8 37 0.0008 18.6 2.9 25 7-31 26-50 (105)
454 KOG0276|consensus 46.1 62 0.0013 23.6 4.5 27 46-72 669-695 (794)
455 PF09477 Type_III_YscG: Bacter 46.0 53 0.0011 18.2 4.5 20 49-68 75-94 (116)
456 COG5187 RPN7 26S proteasome re 45.5 89 0.0019 20.8 6.7 32 2-33 117-148 (412)
457 KOG2997|consensus 45.4 71 0.0015 21.3 4.4 29 49-77 25-53 (366)
458 KOG1463|consensus 44.7 98 0.0021 21.0 5.2 63 5-70 133-195 (411)
459 PRK10454 PTS system N,N'-diace 44.5 56 0.0012 18.1 3.9 24 8-31 39-62 (115)
460 COG3914 Spy Predicted O-linked 44.5 1.2E+02 0.0026 22.0 6.2 62 13-83 80-142 (620)
461 PF08626 TRAPPC9-Trs120: Trans 44.4 45 0.00097 25.9 3.9 27 47-73 246-272 (1185)
462 COG5107 RNA14 Pre-mRNA 3'-end 44.4 99 0.0021 21.9 5.1 53 10-71 442-494 (660)
463 COG0735 Fur Fe2+/Zn2+ uptake r 43.9 20 0.00043 20.5 1.7 26 7-32 27-52 (145)
464 cd09034 BRO1_Alix_like Protein 43.5 90 0.002 20.3 6.5 28 45-72 253-280 (345)
465 KOG2460|consensus 43.1 43 0.00092 23.8 3.3 27 46-72 425-451 (593)
466 KOG1464|consensus 42.4 44 0.00096 22.0 3.2 30 7-36 238-267 (440)
467 PF09797 NatB_MDM20: N-acetylt 42.3 90 0.0019 20.5 4.7 42 18-68 201-242 (365)
468 KOG4459|consensus 42.2 1.2E+02 0.0026 21.2 6.8 41 45-85 135-175 (471)
469 PF12309 KBP_C: KIF-1 binding 40.9 1E+02 0.0022 20.7 4.8 63 16-78 265-344 (371)
470 KOG0292|consensus 40.8 67 0.0015 24.6 4.1 50 16-72 650-701 (1202)
471 PF06855 DUF1250: Protein of u 40.8 39 0.00084 15.3 2.6 27 4-30 19-45 (46)
472 PF02255 PTS_IIA: PTS system, 40.6 59 0.0013 17.3 4.2 25 47-71 18-42 (96)
473 KOG1166|consensus 40.4 1.6E+02 0.0034 22.8 6.0 51 23-73 94-144 (974)
474 KOG0508|consensus 40.2 70 0.0015 22.6 4.0 27 7-33 344-370 (615)
475 COG1747 Uncharacterized N-term 40.0 1.4E+02 0.0031 21.5 6.2 24 47-71 136-159 (711)
476 PF07980 SusD: SusD family; I 39.9 86 0.0019 19.0 4.6 31 42-72 132-162 (266)
477 PF10414 CysG_dimeriser: Siroh 39.4 46 0.001 15.7 3.8 32 40-71 29-60 (60)
478 PF07079 DUF1347: Protein of u 38.8 1.4E+02 0.003 21.1 9.1 38 50-88 469-506 (549)
479 PF10607 CLTH: CTLH/CRA C-term 38.7 71 0.0015 17.7 7.1 56 11-70 12-67 (145)
480 KOG0890|consensus 38.6 1.7E+02 0.0038 25.0 6.2 81 6-86 1708-1798(2382)
481 cd09247 BRO1_Alix_like_2 Prote 36.6 1.3E+02 0.0027 19.9 6.4 28 45-72 255-282 (346)
482 TIGR01716 RGG_Cterm transcript 36.5 95 0.0021 18.5 5.6 67 3-72 131-197 (220)
483 KOG1497|consensus 36.4 1.3E+02 0.0029 20.2 7.1 62 5-70 108-171 (399)
484 PF01239 PPTA: Protein prenylt 36.1 36 0.00078 13.5 3.4 25 62-86 2-26 (31)
485 PF03745 DUF309: Domain of unk 35.8 57 0.0012 15.8 4.3 57 6-65 5-61 (62)
486 KOG1920|consensus 35.6 95 0.0021 24.5 4.3 24 47-70 956-979 (1265)
487 PF12921 ATP13: Mitochondrial 35.4 83 0.0018 17.5 6.4 70 4-74 6-83 (126)
488 cd08977 SusD starch binding ou 35.3 1.3E+02 0.0027 19.6 6.5 56 17-72 142-210 (359)
489 KOG4279|consensus 34.7 23 0.0005 26.4 1.2 25 9-33 296-320 (1226)
490 PF14863 Alkyl_sulf_dimr: Alky 34.2 95 0.0021 17.8 5.5 29 5-33 75-103 (141)
491 COG2250 Uncharacterized conser 33.9 91 0.002 17.5 5.6 26 47-72 17-42 (132)
492 PRK15490 Vi polysaccharide bio 33.6 1.7E+02 0.0037 21.1 5.1 50 7-67 49-98 (578)
493 PF08771 Rapamycin_bind: Rapam 33.3 82 0.0018 16.8 6.5 61 3-72 17-77 (100)
494 KOG4521|consensus 32.8 2.6E+02 0.0057 22.5 7.2 69 6-74 926-1014(1480)
495 cd09242 BRO1_ScBro1_like Prote 32.8 1.5E+02 0.0032 19.6 6.8 27 46-72 247-273 (348)
496 COG2909 MalT ATP-dependent tra 31.9 2.4E+02 0.0051 21.7 8.2 68 8-75 423-490 (894)
497 PRK11619 lytic murein transgly 31.7 2.1E+02 0.0044 20.9 6.0 26 46-71 349-374 (644)
498 COG2514 Predicted ring-cleavag 31.7 13 0.00028 23.7 -0.4 26 5-30 168-193 (265)
499 KOG2422|consensus 31.3 2.1E+02 0.0046 20.9 9.6 79 2-80 286-380 (665)
500 cd09248 BRO1_Rhophilin_1 Prote 30.7 1.1E+02 0.0025 20.7 3.8 27 43-69 106-141 (384)
No 1
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.61 E-value=6.2e-15 Score=73.93 Aligned_cols=63 Identities=29% Similarity=0.249 Sum_probs=58.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~ 74 (90)
+.++|.++...|+|++|+.+|++++++.|.. +.++.++|.++.++| ++++|+.+++++++++|
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5789999999999999999999999998877 566799999999999 79999999999999987
No 2
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.60 E-value=1.4e-14 Score=74.21 Aligned_cols=70 Identities=31% Similarity=0.389 Sum_probs=59.5
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
.+.++|.+|..+|+|++|+.+|++++++....+++ ....+.+++++|.++..+|++++|++++++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--HPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 46899999999999999999999999996555443 33346688999999999999999999999999863
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.54 E-value=5e-14 Score=80.06 Aligned_cols=73 Identities=16% Similarity=-0.054 Sum_probs=34.4
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
++|.++...|++++|+.+|++++++.|.. +..++++|.++..+|++++|+..|++++.++|.++..+.+.|
T Consensus 63 ~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 63 ALAGTWMMLKEYTTAINFYGHALMLDASH---------PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 44444444444444444444444443333 222344555555555555555555555555555544444444
Q ss_pred HH
Q psy8498 85 VK 86 (90)
Q Consensus 85 ~~ 86 (90)
.+
T Consensus 134 ~~ 135 (144)
T PRK15359 134 NA 135 (144)
T ss_pred HH
Confidence 44
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.54 E-value=1.2e-13 Score=78.53 Aligned_cols=77 Identities=17% Similarity=-0.004 Sum_probs=70.9
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.+.|.++...|++++|+.+|++++.+.|.. ...++++|.++..+|++++|+..|++++.++|.++.+++++
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQPWS---------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 467899999999999999999999998876 55569999999999999999999999999999999999999
Q ss_pred HHHHhc
Q psy8498 84 VVKEGV 89 (90)
Q Consensus 84 ~~~~~~ 89 (90)
|.++..
T Consensus 99 g~~l~~ 104 (144)
T PRK15359 99 GVCLKM 104 (144)
T ss_pred HHHHHH
Confidence 998764
No 5
>KOG1173|consensus
Probab=99.52 E-value=7.4e-14 Score=92.03 Aligned_cols=86 Identities=38% Similarity=0.538 Sum_probs=78.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
++.+|.+....++|.+|..+|++++...+...++ ...|.++.+|||+++++++++++|+.+|+++|.+.|+++.++..
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e--~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~as 494 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE--KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHAS 494 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHH
Confidence 5778999999999999999999999887777555 23788899999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q psy8498 83 IVVKEGVL 90 (90)
Q Consensus 83 l~~~~~~~ 90 (90)
+|.+|.++
T Consensus 495 ig~iy~ll 502 (611)
T KOG1173|consen 495 IGYIYHLL 502 (611)
T ss_pred HHHHHHHh
Confidence 99999864
No 6
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.51 E-value=3.4e-13 Score=77.19 Aligned_cols=77 Identities=13% Similarity=-0.023 Sum_probs=70.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..+|..+...|++++|++.|+-+..+.|.. ...| .+||.+++.+|+|++|+..|.+|..++|+++.++++.
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-----~~y~----~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWS-----FDYW----FRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHH----HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 456888899999999999999999999887 4455 9999999999999999999999999999999999999
Q ss_pred HHHHhc
Q psy8498 84 VVKEGV 89 (90)
Q Consensus 84 ~~~~~~ 89 (90)
|.|+-.
T Consensus 110 g~c~L~ 115 (157)
T PRK15363 110 AECYLA 115 (157)
T ss_pred HHHHHH
Confidence 999864
No 7
>KOG4626|consensus
Probab=99.50 E-value=6.9e-14 Score=93.73 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=43.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
.+|+|.+|.++|++++|+.+|++++++.|.. +..+.|+|++|.++|+.+.|+++|.+|++++|..++++.+
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f---------Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALRIKPTF---------ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHhcCchH---------HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 4556666666666666666666666665554 3334555555555555555555555555555555555555
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
+|.+|
T Consensus 462 Lasi~ 466 (966)
T KOG4626|consen 462 LASIY 466 (966)
T ss_pred HHHHh
Confidence 55544
No 8
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.50 E-value=1e-13 Score=68.79 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=57.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (90)
.+|..+...|++++|+..|+++++..|.. ..++..+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999999999999998877 45569999999999999999999999999999875
No 9
>KOG4626|consensus
Probab=99.48 E-value=1.8e-13 Score=91.81 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=72.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
++.|+|.+|.++|..++|..+|+++++..|.. +..++|||.+|..+|++++|+.+|++++.+.|..+.++.
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 57899999999999999999999999999887 666799999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
++|.++-
T Consensus 427 NmGnt~k 433 (966)
T KOG4626|consen 427 NMGNTYK 433 (966)
T ss_pred hcchHHH
Confidence 9998874
No 10
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.39 E-value=5.6e-12 Score=73.03 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=70.2
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.++|.++..+|++++|+.+|++++.+.++.. ..+.++.++|.++...|++++|+.+|++++.++|..+.++.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 357889999999999999999999999865431 11346799999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
++|.++.
T Consensus 111 ~la~i~~ 117 (168)
T CHL00033 111 NMAVICH 117 (168)
T ss_pred HHHHHHH
Confidence 9988875
No 11
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=6.3e-12 Score=78.70 Aligned_cols=77 Identities=17% Similarity=0.089 Sum_probs=66.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+..|++++++.|+. +..++++|.++...|++++|+..|+++++++|++..++.+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~ 137 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDM---------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLN 137 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4578899999999999999999999988766 4556899999999999999999999999999999888888
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 138 lg~~l~ 143 (296)
T PRK11189 138 RGIALY 143 (296)
T ss_pred HHHHHH
Confidence 888764
No 12
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.38 E-value=1.4e-11 Score=71.63 Aligned_cols=80 Identities=24% Similarity=0.240 Sum_probs=70.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|..+...|++++|+.+|+++++..++.... ...+.++|.++.+.|++++|+.++++++.+.|.++.++..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDR------SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 5688999999999999999999999987654211 3467999999999999999999999999999999999988
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 112 lg~~~~ 117 (172)
T PRK02603 112 IAVIYH 117 (172)
T ss_pred HHHHHH
Confidence 888874
No 13
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.35 E-value=1.6e-11 Score=61.96 Aligned_cols=71 Identities=21% Similarity=0.127 Sum_probs=62.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
+..+|...++|++|++++++++++.|.. +..+...|.++.++|++++|.+.++++++..|+++.+....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDD---------PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCccc---------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4578999999999999999999998886 4445899999999999999999999999999988877655443
No 14
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.34 E-value=2e-11 Score=68.07 Aligned_cols=78 Identities=15% Similarity=0.052 Sum_probs=66.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|..+...|++++|...|+++++..|.. ...+.++|.++.++|++++|..++++++.++|.++..+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYN---------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 4567888999999999999999998887655 3445889999999999999999999999999999999988
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 91 la~~~~~ 97 (135)
T TIGR02552 91 AAECLLA 97 (135)
T ss_pred HHHHHHH
Confidence 8888753
No 15
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=2.2e-11 Score=73.36 Aligned_cols=76 Identities=18% Similarity=0.041 Sum_probs=52.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..+|..|...|++..|...+++|+++.|.. ...+..+++.|.++|+.+.|.+.|++|+.++|+++.+++|-
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~---------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSY---------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 356777777777777777777777777665 33346677777777777777777777777777777777666
Q ss_pred HHHHh
Q psy8498 84 VVKEG 88 (90)
Q Consensus 84 ~~~~~ 88 (90)
|...|
T Consensus 110 G~FLC 114 (250)
T COG3063 110 GAFLC 114 (250)
T ss_pred hHHHH
Confidence 66554
No 16
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.30 E-value=3.3e-11 Score=77.28 Aligned_cols=76 Identities=17% Similarity=0.048 Sum_probs=47.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+..+++++++.|.. ...++++|.++..+|++++|+..|+++++++|+++.+...
T Consensus 39 ~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 39 YADRAQANIKLGNFTEAVADANKAIELDPSL---------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3455666666666666666666666665544 3344666666666666666666666666666666666555
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
++.|.
T Consensus 110 l~~~~ 114 (356)
T PLN03088 110 IKECD 114 (356)
T ss_pred HHHHH
Confidence 55543
No 17
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.29 E-value=1.8e-11 Score=60.97 Aligned_cols=66 Identities=20% Similarity=0.090 Sum_probs=56.8
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
...|+|++|+..|+++++..|++ ..+...+|.++.+.|++++|.+.+++.+..+|+++..+.-++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN---------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS---------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 56899999999999999999887 4455899999999999999999999999999988776655543
No 18
>KOG0553|consensus
Probab=99.27 E-value=6.1e-11 Score=73.61 Aligned_cols=73 Identities=29% Similarity=0.209 Sum_probs=44.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
|-+.+|.+.|+|+.|++-.+.++.+.|.. .+.|.+||.+|.-+|++++|++.|+++|.++|++.....++.
T Consensus 120 NRAAAy~~Lg~~~~AVkDce~Al~iDp~y---------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 120 NRAAAYSKLGEYEDAVKDCESALSIDPHY---------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcChHH---------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 34445555555555555555555554444 445577777777777777777777777777776665555555
Q ss_pred HH
Q psy8498 85 VK 86 (90)
Q Consensus 85 ~~ 86 (90)
.+
T Consensus 191 ~A 192 (304)
T KOG0553|consen 191 IA 192 (304)
T ss_pred HH
Confidence 44
No 19
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.27 E-value=7.7e-11 Score=75.58 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=70.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+...|......|+|++|+.+|+++++..|.. ...+.++|.++.++|++++|+.++++++.++|.++.+++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 3466888999999999999999999998876 5566999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 76 lg~~~~~ 82 (356)
T PLN03088 76 KGTACMK 82 (356)
T ss_pred HHHHHHH
Confidence 9988754
No 20
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.25 E-value=1e-10 Score=69.72 Aligned_cols=77 Identities=13% Similarity=0.017 Sum_probs=66.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHH-HHhcC--HHHHHHHHHHHHhhCCCChHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVN-RKLKK--YEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~ 79 (90)
+..+|.+|...|++++|+..|++++++.|++ ..++..+|.++ ...|+ +++|.+.++++++.+|+++.+
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~---------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a 146 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQLRGEN---------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTA 146 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence 5688999999999999999999999999877 55568889874 67777 589999999999999999999
Q ss_pred HHHHHHHHh
Q psy8498 80 FCCIVVKEG 88 (90)
Q Consensus 80 ~~~l~~~~~ 88 (90)
++.+|..+.
T Consensus 147 l~~LA~~~~ 155 (198)
T PRK10370 147 LMLLASDAF 155 (198)
T ss_pred HHHHHHHHH
Confidence 998888764
No 21
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.25 E-value=1.3e-10 Score=59.32 Aligned_cols=78 Identities=28% Similarity=0.186 Sum_probs=68.0
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.++|.++...|++++|+..++++++..|.. ...+..+|.++...|++++|++++++++...|.+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 72 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN---------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHH
Confidence 46789999999999999999999999987654 234588999999999999999999999999998888888
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
.+|.++.
T Consensus 73 ~~~~~~~ 79 (100)
T cd00189 73 NLGLAYY 79 (100)
T ss_pred HHHHHHH
Confidence 8877654
No 22
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=3.1e-11 Score=72.70 Aligned_cols=76 Identities=20% Similarity=0.084 Sum_probs=56.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC--CCChHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--PMKASTF 80 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 80 (90)
+.-++.+|...|+.+.|.+.|++|+++.|++ -.++||.|.++|.+|++++|..+|++|+... +..+.++
T Consensus 72 ~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~---------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~ 142 (250)
T COG3063 72 HLVRAHYYQKLGENDLADESYRKALSLAPNN---------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTL 142 (250)
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhcCCCc---------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhh
Confidence 4567889999999999999999999998887 2234777777777777777777777776532 3455666
Q ss_pred HHHHHHH
Q psy8498 81 CCIVVKE 87 (90)
Q Consensus 81 ~~l~~~~ 87 (90)
-|+|.|-
T Consensus 143 eN~G~Ca 149 (250)
T COG3063 143 ENLGLCA 149 (250)
T ss_pred hhhHHHH
Confidence 6666664
No 23
>KOG0553|consensus
Probab=99.24 E-value=5.1e-11 Score=73.94 Aligned_cols=78 Identities=21% Similarity=0.161 Sum_probs=71.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.+-|.-+.+.++|.+|+..|.+||++.|.+ +..|.+.+-+|.++|.++.|++..+.|++++|....+|..
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~R 154 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---------AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGR 154 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---------chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHH
Confidence 4456778899999999999999999999988 6678999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 155 LG~A~~~ 161 (304)
T KOG0553|consen 155 LGLAYLA 161 (304)
T ss_pred HHHHHHc
Confidence 9998864
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.22 E-value=1.3e-10 Score=82.26 Aligned_cols=78 Identities=10% Similarity=-0.051 Sum_probs=66.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++.+.|++++|+.+|++++++.|+. +..++++|.++...|++++|+..|+++++++|+++.++.+
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALELEPNN---------SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4678888888999999999999998888776 4556889999999999999999999999999988888888
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 683 LA~al~~ 689 (987)
T PRK09782 683 LAYVNQR 689 (987)
T ss_pred HHHHHHH
Confidence 8888753
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.21 E-value=1.6e-10 Score=78.32 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=23.1
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE 87 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 87 (90)
+.++|.++...|++++|+.+|++++.++|++..++..+|.++
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555544
No 26
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.19 E-value=1.9e-10 Score=65.95 Aligned_cols=63 Identities=6% Similarity=-0.127 Sum_probs=58.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
+.++|.++..+|+|++|+..|.+|+.+.|++ +..+.++|.|+...|+.+.|.+.|+.++....
T Consensus 72 ~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd---------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 72 WFRLGECCQAQKHWGEAIYAYGRAAQIKIDA---------PQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999876 55679999999999999999999999998873
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=5.3e-10 Score=66.01 Aligned_cols=77 Identities=16% Similarity=0.032 Sum_probs=63.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+..++++++..|.. ...+..+|.++..+|++++|+++++++++..|.++..+.+
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 104 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPDD---------YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4578889999999999999999998876654 3455788899999999999999999999888888887777
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 105 ~~~~~~ 110 (234)
T TIGR02521 105 YGTFLC 110 (234)
T ss_pred HHHHHH
Confidence 776654
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=3.3e-10 Score=71.01 Aligned_cols=68 Identities=13% Similarity=-0.005 Sum_probs=62.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (90)
.+.++|.++...|++++|+..|++++++.|+. ...+.++|.++...|++++|++.++++++++|+++.
T Consensus 100 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 100 AYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 36789999999999999999999999998876 455699999999999999999999999999998873
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.18 E-value=2.7e-10 Score=77.22 Aligned_cols=77 Identities=6% Similarity=-0.098 Sum_probs=63.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|++++++.|.. ...+.++|.++.++|++++|+..|++++...|.++.++..
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~---------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 472 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF---------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY 472 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 4567888888888888888888888877655 3445888999999999999999999999999988888888
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 473 lg~~~~ 478 (615)
T TIGR00990 473 YGELLL 478 (615)
T ss_pred HHHHHH
Confidence 887765
No 30
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.18 E-value=7.4e-10 Score=60.03 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=62.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC---hHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---AST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~ 79 (90)
+.++|..+...|++++|+..|+++++..|..... +..++.+|.++.+.|++++|+.+|++++...|.+ +.+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA------PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 4578888999999999999999998876643211 3345789999999999999999999999888764 456
Q ss_pred HHHHHHHHh
Q psy8498 80 FCCIVVKEG 88 (90)
Q Consensus 80 ~~~l~~~~~ 88 (90)
+..+|.++.
T Consensus 79 ~~~~~~~~~ 87 (119)
T TIGR02795 79 LLKLGMSLQ 87 (119)
T ss_pred HHHHHHHHH
Confidence 777777654
No 31
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.13 E-value=2.4e-10 Score=74.53 Aligned_cols=65 Identities=18% Similarity=0.016 Sum_probs=57.5
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++.|+|.+|...|+|++|+.+|++++++.|+. .+. ...++|+|.+|..+|++++|+.++++|+++
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-----aeA-~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNP-----DEA-QAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----hHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999998876 211 124699999999999999999999999997
No 32
>KOG1126|consensus
Probab=99.13 E-value=1.1e-10 Score=78.30 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=67.3
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
++..+|++|.++++++.|+-+|++|+++-|.+ ..++..+|..+.+.|+.++|+++|++|+.++|.++...+
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n---------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN---------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccc---------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 56789999999999999999999999998887 445577899999999999999999999999998888888
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
..|.++-
T Consensus 562 ~~~~il~ 568 (638)
T KOG1126|consen 562 HRASILF 568 (638)
T ss_pred HHHHHHH
Confidence 7777654
No 33
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.13 E-value=4.5e-10 Score=68.55 Aligned_cols=76 Identities=18% Similarity=0.086 Sum_probs=69.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
..|......|+|..|+..++++....|.+ +..++-+|.+|-+.|++++|...|.|++++.|.++.+..|+|
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTD---------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCC---------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 47889999999999999999999998887 455599999999999999999999999999999999999999
Q ss_pred HHHhc
Q psy8498 85 VKEGV 89 (90)
Q Consensus 85 ~~~~~ 89 (90)
+.+.+
T Consensus 176 ms~~L 180 (257)
T COG5010 176 MSLLL 180 (257)
T ss_pred HHHHH
Confidence 88753
No 34
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.12 E-value=7.1e-10 Score=61.74 Aligned_cols=68 Identities=12% Similarity=-0.034 Sum_probs=60.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (90)
+.++|.++...|++++|+.+|+++++..|.. ...+.++|.++...|++++|+..++++++++|++...
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALAAALDPDD---------PRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 5678999999999999999999999987665 4455899999999999999999999999999977663
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=9.2e-10 Score=74.05 Aligned_cols=73 Identities=19% Similarity=0.097 Sum_probs=60.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|.++...|++++|+.+|++++++.|.. +..++.+|.++...|++++|+..++++++++|.++..+..
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPIS---------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 4567888899999999999999999998776 4456889999999999999999999999999987665444
Q ss_pred HH
Q psy8498 83 IV 84 (90)
Q Consensus 83 l~ 84 (90)
.+
T Consensus 412 ~~ 413 (553)
T PRK12370 412 KL 413 (553)
T ss_pred HH
Confidence 33
No 36
>KOG1125|consensus
Probab=99.11 E-value=9.2e-11 Score=77.76 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=70.3
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..||++|...|+|++|+.||+.|+...|.+ ...| ++||-.+....+..+|+..|.+|+++.|....+.+++
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd-----~~lW----NRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl 504 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPND-----YLLW----NRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL 504 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCch-----HHHH----HHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence 468999999999999999999999999988 4555 9999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy8498 84 VVKEG 88 (90)
Q Consensus 84 ~~~~~ 88 (90)
|+++.
T Consensus 505 gIS~m 509 (579)
T KOG1125|consen 505 GISCM 509 (579)
T ss_pred hhhhh
Confidence 98765
No 37
>KOG1173|consensus
Probab=99.09 E-value=7.5e-10 Score=73.56 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=66.5
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.|+|.++.+.+.+++|+.+|++++.+.|.+ +.++..+|.+|..+|.++.|+++|.+||.++|.+..+-.
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD---------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 47899999999999999999999999999887 778899999999999999999999999999998865544
Q ss_pred HHH
Q psy8498 82 CIV 84 (90)
Q Consensus 82 ~l~ 84 (90)
-++
T Consensus 528 lL~ 530 (611)
T KOG1173|consen 528 LLK 530 (611)
T ss_pred HHH
Confidence 333
No 38
>KOG1155|consensus
Probab=99.08 E-value=3.8e-10 Score=73.75 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=67.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
+|.-|...+++++|+.+|++|+++.|.. ...| .-+|+=|.++.....|++.|++|++++|.+-.+++.+|+
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~-----~~aW----TLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKY-----LSAW----TLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQ 406 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcch-----hHHH----HHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhH
Confidence 5778999999999999999999998877 3444 889999999999999999999999999999999999999
Q ss_pred HHhcC
Q psy8498 86 KEGVL 90 (90)
Q Consensus 86 ~~~~~ 90 (90)
.|..+
T Consensus 407 aYeim 411 (559)
T KOG1155|consen 407 AYEIM 411 (559)
T ss_pred HHHHh
Confidence 98754
No 39
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.05 E-value=1.1e-09 Score=56.73 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=57.2
Q ss_pred hhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 12 KSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 12 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
++|+|+.|+.+|+++++..|... + ...+..+|.++++.|++++|+..+++ .+.+|.++...+.+|.|+..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~-~------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP-N------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH-H------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh-h------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999988521 1 23447799999999999999999999 88888887888788887754
No 40
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.04 E-value=3e-09 Score=64.28 Aligned_cols=80 Identities=18% Similarity=0.045 Sum_probs=67.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH---H
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS---T 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~ 79 (90)
+.+.|..+...|++++|+..|+++++..|.... ....+..+|.++...|++++|+..|+++++..|+++. +
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 467899999999999999999999998876521 1335688999999999999999999999999997776 5
Q ss_pred HHHHHHHHh
Q psy8498 80 FCCIVVKEG 88 (90)
Q Consensus 80 ~~~l~~~~~ 88 (90)
++.+|.++.
T Consensus 110 ~~~~g~~~~ 118 (235)
T TIGR03302 110 YYLRGLSNY 118 (235)
T ss_pred HHHHHHHHH
Confidence 777777763
No 41
>KOG0543|consensus
Probab=99.03 E-value=1.9e-09 Score=69.31 Aligned_cols=76 Identities=17% Similarity=0.057 Sum_probs=69.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.|++.++.++++|.+|+.+..+++++.|.+ .+.+++-|.++..+|+++.|+..|++++++.|.|-.+..
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNN---------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 46799999999999999999999999998888 777899999999999999999999999999999877766
Q ss_pred HHHHH
Q psy8498 82 CIVVK 86 (90)
Q Consensus 82 ~l~~~ 86 (90)
.+..+
T Consensus 330 el~~l 334 (397)
T KOG0543|consen 330 ELIKL 334 (397)
T ss_pred HHHHH
Confidence 66544
No 42
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.02 E-value=1.7e-09 Score=53.93 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=42.8
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
.++..+|.++...|++++|+.+|+++++++|+++.+++++|.++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999864
No 43
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.02 E-value=3.1e-09 Score=72.85 Aligned_cols=76 Identities=13% Similarity=0.019 Sum_probs=54.3
Q ss_pred hhHHHHHHhhCCHHH----HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498 4 DNVELSSDKSFSYTV----AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (90)
.++|.++...|++++ |+..|++++++.|+. ..++.++|.++..+|++++|+.+++++++++|+++.+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~---------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a 320 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN---------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV 320 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 456777777777764 677777777776654 3445777777777788888888888877777777777
Q ss_pred HHHHHHHHh
Q psy8498 80 FCCIVVKEG 88 (90)
Q Consensus 80 ~~~l~~~~~ 88 (90)
+..+|.++.
T Consensus 321 ~~~La~~l~ 329 (656)
T PRK15174 321 RAMYARALR 329 (656)
T ss_pred HHHHHHHHH
Confidence 777776654
No 44
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.01 E-value=2.7e-09 Score=75.77 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=68.4
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.++|.++...|++++|+.+|++++++.|.. +.+++++|.++..+|++++|+.+|+++++++|+++.+..
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~---------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDD---------PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 35789999999999999999999999998877 556699999999999999999999999999998887776
Q ss_pred HHHHHH
Q psy8498 82 CIVVKE 87 (90)
Q Consensus 82 ~l~~~~ 87 (90)
.+|.+.
T Consensus 716 ~~g~~~ 721 (987)
T PRK09782 716 LTPEQN 721 (987)
T ss_pred hhhHHH
Confidence 666543
No 45
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.00 E-value=8.1e-09 Score=55.89 Aligned_cols=73 Identities=16% Similarity=0.063 Sum_probs=61.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
...+|.++...|++++|+.+|+++++..|..... +..+..+|.++.++|++++|+.++++++...|+++.+..
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA------PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc------cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 3468999999999999999999999988765222 334588999999999999999999999999998776543
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.00 E-value=3.5e-09 Score=71.32 Aligned_cols=67 Identities=18% Similarity=0.070 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
+++++|+..+++++++.|++ +.++..+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 384 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNN---------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM 384 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45899999999999998877 55568999999999999999999999999999999999999988753
No 47
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.98 E-value=4.8e-09 Score=72.24 Aligned_cols=76 Identities=4% Similarity=-0.160 Sum_probs=42.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.+....|++++|+.+++.++++.|+. .....+++.++.+++++++|+..+++++..+|+++.+++.
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 4466667777777777777777777776665 2223444555555555555555555555555544444444
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
+|.++
T Consensus 160 ~a~~l 164 (694)
T PRK15179 160 EAKSW 164 (694)
T ss_pred HHHHH
Confidence 44443
No 48
>KOG4555|consensus
Probab=98.95 E-value=1.5e-08 Score=56.95 Aligned_cols=77 Identities=19% Similarity=0.081 Sum_probs=65.8
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh----HH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA----ST 79 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~ 79 (90)
..-|+...+.|+.+.|++.|.+++.+.|+. ++.|+|-+..++-+|+.++|++...+++++..... .+
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~r---------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa 117 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPER---------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccc---------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence 345788999999999999999999999988 88899999999999999999999999999975333 33
Q ss_pred HHHHHHHHhc
Q psy8498 80 FCCIVVKEGV 89 (90)
Q Consensus 80 ~~~l~~~~~~ 89 (90)
++..|.+|.+
T Consensus 118 ~vQRg~lyRl 127 (175)
T KOG4555|consen 118 FVQRGLLYRL 127 (175)
T ss_pred HHHHHHHHHH
Confidence 5667777664
No 49
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.95 E-value=7e-09 Score=71.44 Aligned_cols=78 Identities=5% Similarity=-0.142 Sum_probs=69.5
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
+..+.+.++.+.+++++|+..+++++...|++ +..++.+|.++.++|++++|+..|++++.-+|+++.++.
T Consensus 122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~ 192 (694)
T PRK15179 122 AFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---------AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV 192 (694)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence 35688999999999999999999999998887 666799999999999999999999999998888899999
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
.+|+++.
T Consensus 193 ~~a~~l~ 199 (694)
T PRK15179 193 GWAQSLT 199 (694)
T ss_pred HHHHHHH
Confidence 8888764
No 50
>KOG1126|consensus
Probab=98.95 E-value=4.9e-10 Score=75.27 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=68.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC-------------------------cchhhHHHHHHhHHHHHHHhc
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE-------------------------IIADKWEPLLNNLGHVNRKLK 57 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------~~~~~~~~~~~~lg~~~~~~g 57 (90)
|-.+|.+|.-+++|+.|+++|++|+.+.|+.... ......-.+++-+|.+|.+++
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence 4568999999999999999999999999865210 011111233478899999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 58 KYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
+++.|.-+|++|++++|.+....+.+|.++-
T Consensus 504 k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPSNSVILCHIGRIQH 534 (638)
T ss_pred hhhHHHHHHHhhhcCCccchhHHhhhhHHHH
Confidence 9999999999999999999999988888764
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.94 E-value=1.9e-08 Score=59.29 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=50.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+..|+++++..+.. .. ...+.++|.++...|++++|..++++++..+|.++.++..
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-QP------ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccc-cc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 3566777777777777777777777642211 00 2234667777777777777777777777777766666666
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
+|.++
T Consensus 175 la~~~ 179 (234)
T TIGR02521 175 LAELY 179 (234)
T ss_pred HHHHH
Confidence 66554
No 52
>PRK15331 chaperone protein SicA; Provisional
Probab=98.94 E-value=1e-08 Score=59.26 Aligned_cols=77 Identities=12% Similarity=-0.063 Sum_probs=64.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
..|.-+...|++++|+..|+-+.-..+.+ .+. +..||.|+..+++|++|+..|..|..+++++|.+.+..|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-----~~Y----~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYN-----PDY----TMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 45666788999999999999888876655 333 488999999999999999999999999999999999999
Q ss_pred HHHhcC
Q psy8498 85 VKEGVL 90 (90)
Q Consensus 85 ~~~~~~ 90 (90)
.|+..|
T Consensus 113 qC~l~l 118 (165)
T PRK15331 113 QCQLLM 118 (165)
T ss_pred HHHHHh
Confidence 888653
No 53
>KOG1840|consensus
Probab=98.93 E-value=1.4e-08 Score=67.78 Aligned_cols=70 Identities=30% Similarity=0.281 Sum_probs=61.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+.++|.+|..+++|.+|+..|++|+.+.....+.. ++..+.++++||.+|.+.|++++|..++++|+.|.
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 45699999999999999999999999998774432 35557789999999999999999999999999874
No 54
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.92 E-value=2.1e-08 Score=58.35 Aligned_cols=66 Identities=24% Similarity=0.267 Sum_probs=55.4
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC--------------HHHHHHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK--------------YEEALEFHK 67 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~ 67 (90)
.+.++|.++...|++++|+.+++++++..|.. ...+..+|.++..+|+ +++|+++++
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQ---------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999987765 3445788999988887 677888888
Q ss_pred HHHhhCCCC
Q psy8498 68 QALVVAPMK 76 (90)
Q Consensus 68 ~al~~~~~~ 76 (90)
+++..+|++
T Consensus 145 ~a~~~~p~~ 153 (172)
T PRK02603 145 QAIRLAPNN 153 (172)
T ss_pred HHHhhCchh
Confidence 888888865
No 55
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.92 E-value=7.9e-09 Score=53.53 Aligned_cols=57 Identities=25% Similarity=0.149 Sum_probs=46.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 69 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 69 (90)
+..+|.++...|+|++|+..+++ .+..+.. ..+..-+|.++.++|++++|++.++++
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---------~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---------PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH---------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 34689999999999999999999 6665544 344467799999999999999999875
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.92 E-value=2.4e-08 Score=61.94 Aligned_cols=87 Identities=17% Similarity=0.053 Sum_probs=65.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC-----------c-chh-------------hHHHHHHhHHHHHHHhc
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE-----------I-IAD-------------KWEPLLNNLGHVNRKLK 57 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~-~~~-------------~~~~~~~~lg~~~~~~g 57 (90)
+...|.++.+.|++++|+++|+++++..|++..- . ..+ .-+..+..+|.++..+|
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence 3467899999999999999999999999985110 0 000 00112367899999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 58 KYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
++++|+.+|+++++.+|+++..+..+|.++..
T Consensus 229 ~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999988753
No 57
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.91 E-value=6.3e-09 Score=47.81 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=38.5
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK 86 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 86 (90)
.+..+|.+|..+|++++|++.|+++++.+|+++.++..+|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 348899999999999999999999999999999999888753
No 58
>KOG1840|consensus
Probab=98.91 E-value=2.2e-08 Score=66.84 Aligned_cols=85 Identities=27% Similarity=0.234 Sum_probs=69.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC--------C
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--------P 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~ 74 (90)
+.+++..|..+|+|++|+..++.|+++..+..+. .....+..++++|.+|..++++++|+..|++|+.+. |
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4579999999999999999999999997766442 234446667889999999999999999999999873 3
Q ss_pred CChHHHHHHHHHHh
Q psy8498 75 MKASTFCCIVVKEG 88 (90)
Q Consensus 75 ~~~~~~~~l~~~~~ 88 (90)
.-+.++.++|..|.
T Consensus 281 ~va~~l~nLa~ly~ 294 (508)
T KOG1840|consen 281 AVAATLNNLAVLYY 294 (508)
T ss_pred HHHHHHHHHHHHHh
Confidence 44566888888774
No 59
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.91 E-value=4.9e-09 Score=45.44 Aligned_cols=33 Identities=39% Similarity=0.558 Sum_probs=29.2
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
.++.++|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 356999999999999999999999999999963
No 60
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.91 E-value=1.5e-08 Score=69.55 Aligned_cols=78 Identities=14% Similarity=-0.027 Sum_probs=65.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.++|.+....|++++|+..|+++++..|+. +..+..+|.++...|++++|+..|+++++++|.++.++.
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~---------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~ 148 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ---------PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFA 148 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 35677888888999999999999999988876 344588899999999999999999999999998888888
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
.+|.++.
T Consensus 149 ~la~~l~ 155 (656)
T PRK15174 149 LHLRTLV 155 (656)
T ss_pred HHHHHHH
Confidence 8777654
No 61
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.91 E-value=4.7e-08 Score=54.11 Aligned_cols=67 Identities=24% Similarity=0.176 Sum_probs=56.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
+.+.|.++...|+.++|+.+|+++++..... ......+..+|.+++.+|++++|+..+++++...|+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSG------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999853221 222446689999999999999999999999988776
No 62
>KOG0543|consensus
Probab=98.90 E-value=2e-08 Score=64.71 Aligned_cols=86 Identities=19% Similarity=0.046 Sum_probs=72.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEI------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (90)
.-|..|.+.|+|..|..-|+++++..+...... .......++.|++.|+.++++|.+|+....++|.++|.|..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 348899999999999999999999888552211 01223446899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q psy8498 79 TFCCIVVKEGVL 90 (90)
Q Consensus 79 ~~~~l~~~~~~~ 90 (90)
+++..|.++..+
T Consensus 293 ALyRrG~A~l~~ 304 (397)
T KOG0543|consen 293 ALYRRGQALLAL 304 (397)
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.90 E-value=1.8e-08 Score=72.60 Aligned_cols=74 Identities=19% Similarity=0.115 Sum_probs=66.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
..|.++...|++++|+.+|++++++.|.. ...+..+|.++..+|++++|+++|+++++++|.+..++..++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTD---------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45778899999999999999999997765 445688999999999999999999999999999999888887
Q ss_pred HHH
Q psy8498 85 VKE 87 (90)
Q Consensus 85 ~~~ 87 (90)
.++
T Consensus 427 ~l~ 429 (1157)
T PRK11447 427 NLY 429 (1157)
T ss_pred HHH
Confidence 765
No 64
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.89 E-value=1.3e-08 Score=60.69 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=58.1
Q ss_pred hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498 13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE 87 (90)
Q Consensus 13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 87 (90)
.++.++++..++++++..|++ .+.| ..+|.++...|++++|+..|+++++++|+++..+..+|.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~-----~~~w----~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN-----SEQW----ALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC-----HHHH----HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 466688888888888888777 4555 99999999999999999999999999999999999999864
No 65
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.86 E-value=2.2e-08 Score=68.72 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=56.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC-------------Cc-----------chhhHHHHHHhHHHHHHHhcC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG-------------EI-----------IADKWEPLLNNLGHVNRKLKK 58 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~-----------~~~~~~~~~~~lg~~~~~~g~ 58 (90)
+..+|.++...|++++|+.+|+++++..|.... .. .....+..+..+|.++...|+
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 345666677777777777777776666543200 00 000002234677888888888
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 59 YEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
+++|+.+|+++++.+|.++.++..++.++.
T Consensus 853 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 888888888888888888888888887765
No 66
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.86 E-value=1.4e-08 Score=43.80 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=29.3
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
..++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 346899999999999999999999999999975
No 67
>KOG0547|consensus
Probab=98.85 E-value=1.1e-08 Score=67.46 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=69.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.+.|.-+.+.|+|++|+.+|..|+++.|+. +.-|.|.+-||...|+|++-++...+|++++|+...+++.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~R 188 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLR 188 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 5677889999999999999999999998764 2346999999999999999999999999999999999988
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
.+.++-.
T Consensus 189 RA~A~E~ 195 (606)
T KOG0547|consen 189 RASAHEQ 195 (606)
T ss_pred HHHHHHh
Confidence 8877643
No 68
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.84 E-value=7.6e-08 Score=59.71 Aligned_cols=77 Identities=14% Similarity=0.049 Sum_probs=61.3
Q ss_pred HHHHH-HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC---ChHHHH
Q psy8498 6 VELSS-DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM---KASTFC 81 (90)
Q Consensus 6 l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~ 81 (90)
.+..+ ...|+|++|+..|++.++..|+.... +..++.+|.+|+..|++++|+..|++++...|+ .+.+++
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a------~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQ------PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCcch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444 55689999999999999999876322 445688999999999999999999999987775 467788
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
.+|.++.
T Consensus 222 klg~~~~ 228 (263)
T PRK10803 222 KVGVIMQ 228 (263)
T ss_pred HHHHHHH
Confidence 8888774
No 69
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.84 E-value=4.3e-08 Score=67.31 Aligned_cols=74 Identities=15% Similarity=0.027 Sum_probs=49.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
++.++...|++++|+..++++++..|.. ...++.+|.++...|++++|+..|+++++..|+++.++.++|.
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 812 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPND---------AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW 812 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3444444444444444444444433322 3455788888888888888888888888888888888888877
Q ss_pred HHh
Q psy8498 86 KEG 88 (90)
Q Consensus 86 ~~~ 88 (90)
++.
T Consensus 813 ~~~ 815 (899)
T TIGR02917 813 LYL 815 (899)
T ss_pred HHH
Confidence 764
No 70
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.84 E-value=3.8e-08 Score=56.97 Aligned_cols=65 Identities=29% Similarity=0.288 Sum_probs=48.4
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHH-------HhcCHHH-------HHHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNR-------KLKKYEE-------ALEFHK 67 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~-------~~g~~~~-------A~~~~~ 67 (90)
++.++|.++...|++++|+.+|++++++.|.. ...+.++|.++. ++|++++ |+..|+
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFL---------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999986655 222355566655 8888774 455555
Q ss_pred HHHhhCCC
Q psy8498 68 QALVVAPM 75 (90)
Q Consensus 68 ~al~~~~~ 75 (90)
+++..+|.
T Consensus 145 ~a~~~~p~ 152 (168)
T CHL00033 145 QAIALAPG 152 (168)
T ss_pred HHHHhCcc
Confidence 56666774
No 71
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.81 E-value=7.7e-08 Score=61.70 Aligned_cols=60 Identities=17% Similarity=0.069 Sum_probs=28.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
+|.++...|++++|+.+|+++++..|.. ...+..+|.++.+.|++++|++.+++++..+|
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQC---------VRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 4444455555555555555555544332 12224445555555555555555555554444
No 72
>KOG0548|consensus
Probab=98.80 E-value=3.1e-08 Score=65.61 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=66.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
+-|.-++..|+|..|+.+|.+|++..|++ +..|.|.|.||.++|.+..|++..+.+++++|+...+|..-|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~D---------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPED---------ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCch---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 34778899999999999999999998877 667799999999999999999999999999999988888888
Q ss_pred HHHh
Q psy8498 85 VKEG 88 (90)
Q Consensus 85 ~~~~ 88 (90)
.++.
T Consensus 434 ~al~ 437 (539)
T KOG0548|consen 434 AALR 437 (539)
T ss_pred HHHH
Confidence 7764
No 73
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.80 E-value=1.1e-07 Score=59.02 Aligned_cols=72 Identities=8% Similarity=-0.056 Sum_probs=62.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (90)
+.-+|.+|...|++++|+..|+++++..|+.... +..+..+|.++..+|++++|+..|++.++..|+...+.
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~------~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA------ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 4568999999999999999999999999987433 44568899999999999999999999999999766543
No 74
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.79 E-value=6.2e-08 Score=62.12 Aligned_cols=81 Identities=9% Similarity=-0.099 Sum_probs=55.5
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..++.++...|++++|+..|+++++..|.... ......+..+|.++.+.|++++|+.+|+++++.+|....++..+
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 220 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR----VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL 220 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence 34555555666666666666655554332210 11123456789999999999999999999999999888888888
Q ss_pred HHHHh
Q psy8498 84 VVKEG 88 (90)
Q Consensus 84 ~~~~~ 88 (90)
|.++.
T Consensus 221 a~~~~ 225 (389)
T PRK11788 221 GDLAL 225 (389)
T ss_pred HHHHH
Confidence 87765
No 75
>KOG1129|consensus
Probab=98.79 E-value=8.4e-09 Score=65.56 Aligned_cols=79 Identities=24% Similarity=0.295 Sum_probs=70.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.|+|.++.-.++++-++.+|++|+......+.. .+.| +|+|.+....||+.-|.++|+-++..++++..++.+
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a--aDvW----YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA--ADVW----YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh--hhhh----hccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence 6799999999999999999999999998765333 4555 999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
+|+..
T Consensus 435 LavL~ 439 (478)
T KOG1129|consen 435 LAVLA 439 (478)
T ss_pred HHHHH
Confidence 99864
No 76
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.79 E-value=7.5e-08 Score=69.55 Aligned_cols=75 Identities=9% Similarity=-0.047 Sum_probs=66.3
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..+|.++...|++++|+.+|++++++.|+. +.++..+|.++..+|++++|+..++++++..|.++.+++..
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~---------~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGS---------VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 457888999999999999999999998876 44568999999999999999999999999999999888777
Q ss_pred HHHH
Q psy8498 84 VVKE 87 (90)
Q Consensus 84 ~~~~ 87 (90)
+..+
T Consensus 536 al~l 539 (1157)
T PRK11447 536 GLYL 539 (1157)
T ss_pred HHHH
Confidence 6543
No 77
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.79 E-value=3.5e-08 Score=50.10 Aligned_cols=63 Identities=33% Similarity=0.280 Sum_probs=55.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
+..+|.++...+++++|+.+|+++++..|.. ...+..+|.++...|++++|..++++++...|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDN---------AKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 4578999999999999999999999987665 23458899999999999999999999998876
No 78
>KOG1155|consensus
Probab=98.77 E-value=5.8e-08 Score=63.83 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=57.7
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhH------------------------------HHHHHhHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKW------------------------------EPLLNNLGH 51 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------------------------~~~~~~lg~ 51 (90)
++.-+|.-|.++.+-..|++.|++|+++-|.+ ...| ..++..||.
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-----yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-----YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGE 440 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-----HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 34567888888888888888888888888876 2222 222366777
Q ss_pred HHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 52 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 52 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
||.++++.++|+.+|++|+.....+..++..+|..|-
T Consensus 441 CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 441 CYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 7777777777777777777776666677777776653
No 79
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.76 E-value=1.6e-07 Score=57.64 Aligned_cols=77 Identities=6% Similarity=-0.128 Sum_probs=63.7
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC---hHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---ASTFC 81 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 81 (90)
..|..+...|+|++|++.|++.++..|.. .........+|.++++.+++++|+..+++.++..|++ +.+++
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45777888999999999999999988865 2223456889999999999999999999999999865 45577
Q ss_pred HHHHHH
Q psy8498 82 CIVVKE 87 (90)
Q Consensus 82 ~l~~~~ 87 (90)
.+|.++
T Consensus 111 ~~g~~~ 116 (243)
T PRK10866 111 MRGLTN 116 (243)
T ss_pred HHHHhh
Confidence 777663
No 80
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=1.3e-07 Score=58.03 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=70.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|.+|.+.|+++.|..-|.+++++.+.. +++.+|+|..+.-.|+++.|..++..+....+.+..+..+
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNE---------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCC---------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 5678999999999999999999999999987 6677999999999999999999999998777778888888
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
++.+..+
T Consensus 208 LAl~~~~ 214 (257)
T COG5010 208 LALVVGL 214 (257)
T ss_pred HHHHHhh
Confidence 8887653
No 81
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.76 E-value=2.1e-07 Score=55.65 Aligned_cols=80 Identities=15% Similarity=0.044 Sum_probs=63.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh---HH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---ST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~ 79 (90)
+-..|..+...|+|++|+..|++.++..|.... .+.....+|.++++.|++++|+..+++-++..|.++ .+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 456789999999999999999999999887633 255668999999999999999999999999998654 46
Q ss_pred HHHHHHHHh
Q psy8498 80 FCCIVVKEG 88 (90)
Q Consensus 80 ~~~l~~~~~ 88 (90)
++.+|.++.
T Consensus 82 ~Y~~g~~~~ 90 (203)
T PF13525_consen 82 LYMLGLSYY 90 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777877653
No 82
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.76 E-value=1.5e-07 Score=53.31 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=65.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH---H
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS---T 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~ 79 (90)
+-+-|.-..+.|+|++|++.|+......|..... ..+...++.+|++.|++++|+..+++-++++|.++. +
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3456778889999999999999999988877444 445588999999999999999999999999997654 4
Q ss_pred HHHHHHHH
Q psy8498 80 FCCIVVKE 87 (90)
Q Consensus 80 ~~~l~~~~ 87 (90)
++.+|.++
T Consensus 87 ~Y~~gL~~ 94 (142)
T PF13512_consen 87 YYMRGLSY 94 (142)
T ss_pred HHHHHHHH
Confidence 66677654
No 83
>KOG2002|consensus
Probab=98.74 E-value=9.7e-08 Score=66.91 Aligned_cols=79 Identities=19% Similarity=0.114 Sum_probs=69.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.|+|.+|..+|+|..|++.|+..++-.-.. +. ..+++.||.++++.|++.+|.+....|+.+.|.++...++
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~-~~------~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKK-NR------SEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhccc-CC------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 6799999999999999999999999876633 11 4456889999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.+.-
T Consensus 756 ~a~v~k 761 (1018)
T KOG2002|consen 756 LALVLK 761 (1018)
T ss_pred HHHHHH
Confidence 998864
No 84
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.73 E-value=1.7e-07 Score=57.81 Aligned_cols=80 Identities=21% Similarity=0.131 Sum_probs=67.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC---ChHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM---KASTF 80 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~ 80 (90)
.+.+.-+...|+|..|+..|++=++.+|..... +..+++||.+++.+|+++.|...|..+.+-.|+ -++++
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 467888889999999999999999999887433 556688999999999999999999999988774 46779
Q ss_pred HHHHHHHhc
Q psy8498 81 CCIVVKEGV 89 (90)
Q Consensus 81 ~~l~~~~~~ 89 (90)
+.+|.+..-
T Consensus 219 lKlg~~~~~ 227 (262)
T COG1729 219 LKLGVSLGR 227 (262)
T ss_pred HHHHHHHHH
Confidence 999988653
No 85
>KOG0548|consensus
Probab=98.73 E-value=7.9e-08 Score=63.76 Aligned_cols=88 Identities=18% Similarity=0.095 Sum_probs=68.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC-----------------cchhhHHHHHHhHHHHHHHhcCHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE-----------------IIADKWEPLLNNLGHVNRKLKKYEEALEF 65 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 65 (90)
+..+|..|.++++++.|+.+|++++......... -.....+.--..-|..+++.|+|..|+..
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 4567889999999999999999999876652110 00000011124459999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHhcC
Q psy8498 66 HKQALVVAPMKASTFCCIVVKEGVL 90 (90)
Q Consensus 66 ~~~al~~~~~~~~~~~~l~~~~~~~ 90 (90)
|.+|+..+|+++..|+|.|.||..|
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999764
No 86
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.70 E-value=1.9e-07 Score=65.15 Aligned_cols=79 Identities=20% Similarity=0.068 Sum_probs=43.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhH------------------------------HHHHHhHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKW------------------------------EPLLNNLGHV 52 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------------------------~~~~~~lg~~ 52 (90)
+.++|.++...|++++|+.+|+++++..|.. ...+ .. +..+|.+
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQN-----DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 3455666666666666666666666665543 0111 12 3555666
Q ss_pred HHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498 53 NRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE 87 (90)
Q Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 87 (90)
+...|++++|+..+++++++.|+++.++..++.++
T Consensus 126 l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 66666666666666666666665555555555443
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=1.7e-07 Score=59.49 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=58.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH----H
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS----T 79 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~ 79 (90)
..+|.++...|++++|+..++++++..|+. ...+..+|.++...|++++|+.++++++...|..+. .
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDD---------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 356788999999999999999999987765 335588899999999999999999999988764332 2
Q ss_pred HHHHHHHH
Q psy8498 80 FCCIVVKE 87 (90)
Q Consensus 80 ~~~l~~~~ 87 (90)
+..+|.++
T Consensus 189 ~~~la~~~ 196 (355)
T cd05804 189 WWHLALFY 196 (355)
T ss_pred HHHHHHHH
Confidence 33455554
No 88
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.69 E-value=2.3e-07 Score=64.74 Aligned_cols=75 Identities=15% Similarity=-0.086 Sum_probs=65.9
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..++.++...|++++|+..++++++..|.. ...+..+|.++...|++++|++.+++++.++|++...+...
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGN---------QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 356889999999999999999999998877 44559999999999999999999999999999998888777
Q ss_pred HHHH
Q psy8498 84 VVKE 87 (90)
Q Consensus 84 ~~~~ 87 (90)
|.+.
T Consensus 434 a~~a 437 (765)
T PRK10049 434 AWTA 437 (765)
T ss_pred HHHH
Confidence 7654
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=4.2e-07 Score=54.94 Aligned_cols=71 Identities=14% Similarity=-0.014 Sum_probs=60.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh--------cCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL--------KKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~~ 74 (90)
+..+|.++...|++++|+..|+++++..|+.... ...++.+|.++... |++++|++.|++++...|
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 4578999999999999999999999999876221 33458889999876 899999999999999999
Q ss_pred CChHH
Q psy8498 75 MKAST 79 (90)
Q Consensus 75 ~~~~~ 79 (90)
.+..+
T Consensus 147 ~~~~~ 151 (235)
T TIGR03302 147 NSEYA 151 (235)
T ss_pred CChhH
Confidence 87544
No 90
>KOG4234|consensus
Probab=98.61 E-value=2.9e-07 Score=55.19 Aligned_cols=79 Identities=20% Similarity=0.137 Sum_probs=65.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
=|.-++..|+|++|...|..|+++-|.... .....++.|-|.++.+++.++.|+....+|+++.|.+-.++...|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTST----EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccH----HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 366788999999999999999999887632 2334467889999999999999999999999999988888877777
Q ss_pred HHh
Q psy8498 86 KEG 88 (90)
Q Consensus 86 ~~~ 88 (90)
+|-
T Consensus 177 aye 179 (271)
T KOG4234|consen 177 AYE 179 (271)
T ss_pred HHH
Confidence 764
No 91
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.59 E-value=7.4e-07 Score=55.30 Aligned_cols=77 Identities=13% Similarity=0.005 Sum_probs=53.9
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
....++...++++++...+.++....+ ...+ +..+..+|.++.+.|++++|+++|+++++++|+++.+...++
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPA-APDS------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T----T-------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccC-CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344567778888888888888764321 1111 345588999999999999999999999999999999888887
Q ss_pred HHHh
Q psy8498 85 VKEG 88 (90)
Q Consensus 85 ~~~~ 88 (90)
.++.
T Consensus 188 ~~li 191 (280)
T PF13429_consen 188 WLLI 191 (280)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7653
No 92
>KOG0550|consensus
Probab=98.59 E-value=9.2e-08 Score=62.15 Aligned_cols=78 Identities=21% Similarity=0.127 Sum_probs=68.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK 86 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 86 (90)
|.-..+.|+|..|.++|.++|.+.|.+ ....+.+|.+.|.+..++|+.++|+....+++.++|....++...|.|
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n-----~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSN-----KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccc-----cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 556778999999999999999999987 344477889999999999999999999999999999888888888888
Q ss_pred Hhc
Q psy8498 87 EGV 89 (90)
Q Consensus 87 ~~~ 89 (90)
+..
T Consensus 331 ~l~ 333 (486)
T KOG0550|consen 331 HLA 333 (486)
T ss_pred HHH
Confidence 754
No 93
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.58 E-value=8.1e-07 Score=55.50 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=55.3
Q ss_pred hhhHHHHHHhh-CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKS-FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+.++|.+|... |++++|+++|++|++++...+.. .....++.++|.++.++|+|++|++.|++.....
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~---~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP---HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 56889999999 99999999999999999988643 2234567899999999999999999999988654
No 94
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.58 E-value=4.4e-07 Score=61.02 Aligned_cols=66 Identities=12% Similarity=-0.059 Sum_probs=57.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (90)
..+|..+...|++++|...+++|+++.| . ...+..+|.++...|++++|++.|++|+.++|..+.-
T Consensus 424 ~ala~~~~~~g~~~~A~~~l~rAl~L~p-s---------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 424 EILAVQALVKGKTDEAYQAINKAIDLEM-S---------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 3467888889999999999999999975 2 3456899999999999999999999999999987754
No 95
>PLN02789 farnesyltranstransferase
Probab=98.57 E-value=8.6e-07 Score=56.45 Aligned_cols=76 Identities=16% Similarity=0.016 Sum_probs=56.9
Q ss_pred hhhHHHHHHhhCCH--HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498 3 LDNVELSSDKSFSY--TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 3 ~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (90)
+++.+.++...|+. ++++.++.++++..|++ ... ++..+.++...|+++++++++.++++++|.+..++
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-----y~A----W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-----YHA----WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-----HHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 34445555555553 55666777777776666 333 48889999999999999999999999999999998
Q ss_pred HHHHHHH
Q psy8498 81 CCIVVKE 87 (90)
Q Consensus 81 ~~l~~~~ 87 (90)
...+++.
T Consensus 180 ~~R~~vl 186 (320)
T PLN02789 180 NQRYFVI 186 (320)
T ss_pred HHHHHHH
Confidence 8888764
No 96
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=98.56 E-value=2.1e-07 Score=40.93 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
++.+||.+|...|+|++|+++|++++.+.++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 47899999999999999999999999876654
No 97
>KOG2003|consensus
Probab=98.55 E-value=1.1e-06 Score=58.34 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=55.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.|+|+.+-.+|+.++|+.+|-+.-.+...+ +.++..++.+|..+.+..+|++++-|+..+-|.+|..+..
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~il~nn---------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAILLNN---------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 5567777777777777777777766665554 4555777777777777778888888877777777777777
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
+|.+|
T Consensus 598 l~dly 602 (840)
T KOG2003|consen 598 LADLY 602 (840)
T ss_pred HHHHh
Confidence 77665
No 98
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.54 E-value=4e-07 Score=59.84 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=43.8
Q ss_pred HHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHhcC
Q psy8498 42 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST---FCCIVVKEGVL 90 (90)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~l~~~~~~~ 90 (90)
.+..++|+|.+|.++|+|++|+..|+++++++|+++.+ ++++|.+|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L 125 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR 125 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc
Confidence 35567999999999999999999999999999998854 99999998754
No 99
>KOG1125|consensus
Probab=98.54 E-value=7.9e-07 Score=59.60 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=70.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.-.|..+.+.|+..+|.-+|+.|++..|.. .+.| ..||.++.+.++-..|+..+++|++++|.|-.++..+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h-----aeAW----~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaL 359 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH-----AEAW----QKLGITQAENENEQNAISALRRCLELDPTNLEALMAL 359 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHH-----HHHH----HHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHH
Confidence 356889999999999999999999999998 6666 9999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy8498 84 VVKEG 88 (90)
Q Consensus 84 ~~~~~ 88 (90)
|+.|.
T Consensus 360 AVSyt 364 (579)
T KOG1125|consen 360 AVSYT 364 (579)
T ss_pred HHHHh
Confidence 99874
No 100
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.53 E-value=2.8e-07 Score=39.68 Aligned_cols=31 Identities=42% Similarity=0.674 Sum_probs=28.9
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5689999999999999999999999999884
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=1.1e-06 Score=58.04 Aligned_cols=77 Identities=17% Similarity=-0.011 Sum_probs=66.8
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
-.+.++.+.++..+|++.+++++...|.. .....++|.++.+.|++.+|+...++.+.-+|+++..|..+|
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~---------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LA 415 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNS---------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLA 415 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCc---------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHH
Confidence 45788889999999999999999988865 223488999999999999999999999999999999999999
Q ss_pred HHHhcC
Q psy8498 85 VKEGVL 90 (90)
Q Consensus 85 ~~~~~~ 90 (90)
.+|..+
T Consensus 416 qay~~~ 421 (484)
T COG4783 416 QAYAEL 421 (484)
T ss_pred HHHHHh
Confidence 988753
No 102
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.53 E-value=2.8e-07 Score=46.85 Aligned_cols=47 Identities=30% Similarity=0.329 Sum_probs=37.2
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC----C---CChHHHHHHHHHHhc
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA----P---MKASTFCCIVVKEGV 89 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~---~~~~~~~~l~~~~~~ 89 (90)
+.+++++|.+|+.+|++++|+++|++++++. + ..+.++.++|.++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~ 58 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR 58 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999762 1 224567888888753
No 103
>KOG0547|consensus
Probab=98.52 E-value=4.1e-07 Score=60.35 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=62.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|.+|.+..+.++....|.+|.++.|.+ +.+|+..|.++.-++++++|+..|++++.++|++.-++..
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n---------~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPEN---------PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCC---------CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 4456778888888888888888888887776 4566888999999999999999999999999998888877
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
++.+.
T Consensus 434 l~~a~ 438 (606)
T KOG0547|consen 434 LCCAL 438 (606)
T ss_pred HHHHH
Confidence 76653
No 104
>KOG2002|consensus
Probab=98.51 E-value=5.9e-07 Score=63.16 Aligned_cols=79 Identities=18% Similarity=0.053 Sum_probs=68.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|..|..+|+|++|..+|.++++..+++- .-.+.-+|..+.+.|+++.|+-+|++.++..|++..++..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~--------~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNF--------VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCc--------cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 56789999999999999999999998876550 2234779999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|..|+.
T Consensus 382 LG~Lya~ 388 (1018)
T KOG2002|consen 382 LGCLYAH 388 (1018)
T ss_pred HHhHHHh
Confidence 9998863
No 105
>PRK15331 chaperone protein SicA; Provisional
Probab=98.51 E-value=6.9e-07 Score=51.76 Aligned_cols=65 Identities=11% Similarity=0.006 Sum_probs=55.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (90)
..+|.+++..++|++|+..|.-+..+.+++ +...+..|.|+..+|+.+.|..+|+.++. .|.+..
T Consensus 75 ~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d---------p~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 75 MGLAAVCQLKKQFQKACDLYAVAFTLLKND---------YRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCC---------CCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 478999999999999999999999988755 22238899999999999999999999987 454433
No 106
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.50 E-value=1e-07 Score=41.48 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHH
Q psy8498 22 CFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEAL 63 (90)
Q Consensus 22 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 63 (90)
+|++|+++.|++ +..++++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n---------~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNN---------AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCC---------HHHHHHHHHHHHHCcCHHhhc
Confidence 488999999988 556699999999999999986
No 107
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=98.50 E-value=3.7e-07 Score=40.08 Aligned_cols=28 Identities=50% Similarity=0.802 Sum_probs=24.3
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+.+||.+|.++|+|++|+++|++++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5889999999999999999999977654
No 108
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=2.5e-06 Score=55.69 Aligned_cols=77 Identities=26% Similarity=0.097 Sum_probs=65.4
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
-++.++...++-.+|++...++++..|.. ...+...+.++...++++.|+...++++.+.|.+..+|..++
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La 275 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQD---------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA 275 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35777777888888888888888665544 445688899999999999999999999999999999999999
Q ss_pred HHHhcC
Q psy8498 85 VKEGVL 90 (90)
Q Consensus 85 ~~~~~~ 90 (90)
.+|..+
T Consensus 276 ~~Yi~~ 281 (395)
T PF09295_consen 276 ECYIQL 281 (395)
T ss_pred HHHHhc
Confidence 998753
No 109
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.46 E-value=6.3e-07 Score=44.02 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=39.1
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 48 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
.+|..+.+.|++++|++.|+++++.+|+++.++..+|.++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~ 43 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ 43 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998753
No 110
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.46 E-value=1.1e-06 Score=54.96 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=53.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-cCHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-KKYEEALEFHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~ 73 (90)
+.+.+.++.+. ++++|+++|++|+++....+.. ...+.++.++|.+|... |++++|+++|++|+.+.
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~---~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y 145 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF---SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY 145 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H---HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45566776655 9999999999999998877543 44467789999999999 99999999999999874
No 111
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3e-06 Score=53.02 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=47.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc---CHHHHHHHHHHHHhhCCCChHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~ 79 (90)
+.-+|.+|...|+++.|...|.+|+++.+++ +.++.-+|+++..+. ...++...+++++..+|.+..+
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n---------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAGDN---------PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 4568999999999999999999999999987 222233444433322 2344445555555555555544
Q ss_pred HHHHHH
Q psy8498 80 FCCIVV 85 (90)
Q Consensus 80 ~~~l~~ 85 (90)
.+-+|+
T Consensus 230 l~lLA~ 235 (287)
T COG4235 230 LSLLAF 235 (287)
T ss_pred HHHHHH
Confidence 444443
No 112
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.45 E-value=2.8e-07 Score=39.73 Aligned_cols=31 Identities=16% Similarity=0.006 Sum_probs=27.5
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
.+.++|.+|..+|++++|+.+|++++++.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3678999999999999999999999999875
No 113
>KOG1130|consensus
Probab=98.44 E-value=1.5e-06 Score=57.12 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=65.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC------C
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------M 75 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~ 75 (90)
+..|+|.+|.-.|+++.|+++|++++.+..+.++... . +...+.+|+.|.-..++++|+.|+++=+.|.. .
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v--E-AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV--E-AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH--H-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3568999999999999999999999999888876532 2 33458899999999999999999999887643 3
Q ss_pred ChHHHHHHHHHHh
Q psy8498 76 KASTFCCIVVKEG 88 (90)
Q Consensus 76 ~~~~~~~l~~~~~ 88 (90)
...+.+.+|..+.
T Consensus 314 e~RacwSLgna~~ 326 (639)
T KOG1130|consen 314 ELRACWSLGNAFN 326 (639)
T ss_pred hHHHHHHHHHHHH
Confidence 4455666666553
No 114
>KOG2003|consensus
Probab=98.44 E-value=4e-07 Score=60.41 Aligned_cols=80 Identities=20% Similarity=0.133 Sum_probs=65.9
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
++.|-|.+-...|++++|.+.|++|++....- ...++|+|..+..+|+.++|+++|-+.-.+--++...++
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~ 562 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLV 562 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45677888889999999999999999864322 345699999999999999999999987666557888888
Q ss_pred HHHHHHhcC
Q psy8498 82 CIVVKEGVL 90 (90)
Q Consensus 82 ~l~~~~~~~ 90 (90)
.++.+|-+|
T Consensus 563 qianiye~l 571 (840)
T KOG2003|consen 563 QIANIYELL 571 (840)
T ss_pred HHHHHHHHh
Confidence 998888654
No 115
>KOG1129|consensus
Probab=98.43 E-value=2.3e-07 Score=59.17 Aligned_cols=85 Identities=13% Similarity=-0.008 Sum_probs=57.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC--------------cc-----------hhhHHHHHHhHHHHHHHhc
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE--------------II-----------ADKWEPLLNNLGHVNRKLK 57 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~-----------~~~~~~~~~~lg~~~~~~g 57 (90)
+..++.++..++++++|.++|+.+++..+.+-.. +. ....+..+.|+|.|..-.+
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 3467889999999999999999999987775211 00 0001334577777777777
Q ss_pred CHHHHHHHHHHHHhhCC---CChHHHHHHHHHH
Q psy8498 58 KYEEALEFHKQALVVAP---MKASTFCCIVVKE 87 (90)
Q Consensus 58 ~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~ 87 (90)
+++-++..|++|+.... ..+..|+++|++.
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVA 405 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence 77777777777776643 2345677777653
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.39 E-value=3.8e-06 Score=47.62 Aligned_cols=78 Identities=15% Similarity=0.015 Sum_probs=56.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..+|.++...|++++|...|+++++..++. .....+..++|.++..+|++++|+..+++. .-.+-.+......
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANAPDP------ELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHH
Confidence 457888999999999999999999865332 222345688999999999999999999662 2233344555566
Q ss_pred HHHHh
Q psy8498 84 VVKEG 88 (90)
Q Consensus 84 ~~~~~ 88 (90)
|.++.
T Consensus 125 Gdi~~ 129 (145)
T PF09976_consen 125 GDIYL 129 (145)
T ss_pred HHHHH
Confidence 66653
No 117
>KOG2076|consensus
Probab=98.37 E-value=3e-06 Score=59.26 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=66.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.+++..+...|.|.+|+.+|..+.+..+... .. ++..+|.||..+|.+++|+.+|++++.+.|.+..+...
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~----~~----vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~ 488 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNREGYQN----AF----VWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARIT 488 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCccccc----hh----hhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh
Confidence 45788999999999999999998887644431 22 34899999999999999999999999999999999888
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
++.++-.
T Consensus 489 Lasl~~~ 495 (895)
T KOG2076|consen 489 LASLYQQ 495 (895)
T ss_pred HHHHHHh
Confidence 8877653
No 118
>KOG3060|consensus
Probab=98.36 E-value=3.7e-06 Score=51.88 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=57.3
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC---HHHHHHHHHHHHhhCCCChH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK---YEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~ 78 (90)
+++.++.+|...|+|++|.-|+++.+=+.|.+ +.++.++|.+++-+|. ++-|.++|.++++++|.+..
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n---------~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLIQPFN---------PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 35667888888888888888888888877765 5566777888777765 55688888888888887777
Q ss_pred HHHHHHHH
Q psy8498 79 TFCCIVVK 86 (90)
Q Consensus 79 ~~~~l~~~ 86 (90)
+++.|-.|
T Consensus 227 al~GI~lc 234 (289)
T KOG3060|consen 227 ALFGIYLC 234 (289)
T ss_pred HHHHHHHH
Confidence 77666544
No 119
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.35 E-value=6.3e-06 Score=48.45 Aligned_cols=60 Identities=23% Similarity=0.166 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-----------HHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-----------YEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 16 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
+++|+..|++|+.+.|+. ..++.++|++|..++. |++|.++|++|...+|++......+.
T Consensus 51 iedAisK~eeAL~I~P~~---------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNK---------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 456788888888888776 4455889999888776 88999999999999998765544443
No 120
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.35 E-value=6.8e-07 Score=38.32 Aligned_cols=30 Identities=17% Similarity=0.000 Sum_probs=26.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
+..+|.++...|++++|+++|++++++.|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 568999999999999999999999999875
No 121
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=7.7e-06 Score=52.18 Aligned_cols=69 Identities=12% Similarity=0.007 Sum_probs=37.7
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498 9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVAPMKASTFCCIVVK 86 (90)
Q Consensus 9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 86 (90)
++...+++++|+..+.+++++.|.. .+.| +..|.++..+| +++++++++.++++.+|++..++...+.+
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~-----ytaW----~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGN-----YTVW----HFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh-----HHHH----HHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 3444555666666666666665555 2233 55555555555 34555555555555555555555544433
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=4e-06 Score=59.39 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=42.3
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
+++.+|.||.++|++++|...|+++++++|+++.++.++|..++.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999998864
No 123
>KOG4648|consensus
Probab=98.32 E-value=8.8e-07 Score=57.00 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=26.1
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
..-|.-|+++|.|++|+.||.+++...|-+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~N 130 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHN 130 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCC
Confidence 345788999999999999999999998865
No 124
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.31 E-value=7.1e-06 Score=50.82 Aligned_cols=73 Identities=16% Similarity=0.028 Sum_probs=64.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
..=||.++..+|+|++|...|..+.+-.|+.... +..++.+|.+..++|+.++|...+++.++-.|..+.+..
T Consensus 181 ~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA------pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA------PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 4458999999999999999999999988887544 556799999999999999999999999999998776644
No 125
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.31 E-value=1.6e-06 Score=39.62 Aligned_cols=31 Identities=13% Similarity=-0.122 Sum_probs=29.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+..+|.+|...|++++|++.|+++++..|++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 5678999999999999999999999999987
No 126
>KOG4234|consensus
Probab=98.30 E-value=8.4e-06 Score=49.08 Aligned_cols=72 Identities=25% Similarity=0.186 Sum_probs=62.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.|-|.+..+.+.++.|+.-..+++++-|.. .+.+.+.+.+|.++..|++|+..|++.++++|....+.-.
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty---------~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTY---------EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchh---------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 4577889999999999999999999998776 5566888999999999999999999999999976655544
Q ss_pred H
Q psy8498 83 I 83 (90)
Q Consensus 83 l 83 (90)
+
T Consensus 208 i 208 (271)
T KOG4234|consen 208 I 208 (271)
T ss_pred H
Confidence 3
No 127
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.28 E-value=6.1e-06 Score=58.25 Aligned_cols=84 Identities=11% Similarity=0.125 Sum_probs=57.2
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC--------------cc-----------hhhHHHHHHhHHHHHHHhcCH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGE--------------II-----------ADKWEPLLNNLGHVNRKLKKY 59 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~-----------~~~~~~~~~~lg~~~~~~g~~ 59 (90)
..+++..+.|++++|+..|+++++..|..... .. .......+..+|.++..+|++
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 34666677777777777777777666664100 00 001112234457799999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 60 EEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
++|++.|+++++.+|+++.++..++.++.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~ 147 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQA 147 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Confidence 99999999999999999988887766654
No 128
>KOG4162|consensus
Probab=98.27 E-value=5.1e-06 Score=57.48 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=48.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHH--HHHHHHhhCCCChHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE--FHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~l 83 (90)
.|..+...|++++|...|..|+.+.|+. ..++..+|.++.+.|+..-|.. +...+++++|.++.+|+.+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ldP~h---------v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALDPDH---------VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCC---------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 4777888888999999999999888876 3334555555555555555555 5555556666556666555
Q ss_pred HHHH
Q psy8498 84 VVKE 87 (90)
Q Consensus 84 ~~~~ 87 (90)
|.+.
T Consensus 761 G~v~ 764 (799)
T KOG4162|consen 761 GEVF 764 (799)
T ss_pred HHHH
Confidence 5554
No 129
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.27 E-value=5.5e-06 Score=52.64 Aligned_cols=67 Identities=9% Similarity=-0.061 Sum_probs=55.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
.+.+|.++...|++++|+.+++++++..|.. .......+..+|.++..+|++++|++.|++++...|
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-----SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-----cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999987652 111123456899999999999999999999987665
No 130
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.26 E-value=1.1e-05 Score=44.64 Aligned_cols=63 Identities=24% Similarity=0.112 Sum_probs=52.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+.++|..+...|++++|+..+++++...|+.... ......++.++...|++++|++.+-+++.
T Consensus 41 ~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~------~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 41 LIQLASTLRNLGRYDEALALLEEALEEFPDDELN------AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999877764222 22335688999999999999999998875
No 131
>KOG1156|consensus
Probab=98.25 E-value=5.4e-06 Score=56.52 Aligned_cols=74 Identities=18% Similarity=0.077 Sum_probs=52.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
.|..+..+|+-++|..+.+.+++..+.. ..|++.+|.+++...+|++|+.+|+.|+.+.|+|-..+.-++.
T Consensus 47 kGL~L~~lg~~~ea~~~vr~glr~d~~S---------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl 117 (700)
T KOG1156|consen 47 KGLTLNCLGKKEEAYELVRLGLRNDLKS---------HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL 117 (700)
T ss_pred ccchhhcccchHHHHHHHHHHhccCccc---------chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4666777777777777777777754443 3345777888888888888888888888777777777666665
Q ss_pred HHh
Q psy8498 86 KEG 88 (90)
Q Consensus 86 ~~~ 88 (90)
.++
T Consensus 118 LQ~ 120 (700)
T KOG1156|consen 118 LQI 120 (700)
T ss_pred HHH
Confidence 543
No 132
>KOG4162|consensus
Probab=98.25 E-value=3.8e-06 Score=58.08 Aligned_cols=68 Identities=22% Similarity=0.186 Sum_probs=61.9
Q ss_pred chhhHHHHHHhhCCHHHHHH--HHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498 2 DLDNVELSSDKSFSYTVAEN--CFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (90)
++..+|.++.+.|+..-|+. ..+.++++.|.+ .+.| +.+|.++.++|+.++|.++|+-|+++.+.+|.
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-----~eaW----~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLN-----HEAW----YYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-----HHHH----HHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 35788999999999999999 999999999988 6777 99999999999999999999999999887764
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=4.7e-06 Score=59.07 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=56.3
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++..+|.+|.++|++++|...|++++++.|.+ +.+++++|..|... +.++|+.++.+|+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDN---------PEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCccc---------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999877 77789999999999 999999999999965
No 134
>KOG0545|consensus
Probab=98.22 E-value=3.5e-05 Score=47.74 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=70.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhC--CCcchhhH-------HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLG--GEIIADKW-------EPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
++.-|.-+...|+|.+|...|+.|+-...... ..+....| ...+.|++.|+...|+|=++++.....+...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 45567888999999999999999998887761 11112222 3356889999999999999999999999999
Q ss_pred CCChHHHHHHHHHHh
Q psy8498 74 PMKASTFCCIVVKEG 88 (90)
Q Consensus 74 ~~~~~~~~~l~~~~~ 88 (90)
|.+..+++..|-+++
T Consensus 261 ~~nvKA~frRakAha 275 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHA 275 (329)
T ss_pred CchHHHHHHHHHHHH
Confidence 999999998887765
No 135
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.21 E-value=3.3e-06 Score=36.20 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=28.2
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
++..+|.+|...|++++|+.+|++++++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3678999999999999999999999999873
No 136
>KOG1128|consensus
Probab=98.20 E-value=3e-06 Score=58.32 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=62.0
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
....++|+++.++++..+++.|-. .. +++++|.+..+.++++.|.++|.+++.++|++..++.|++..|..
T Consensus 495 ~~~~~~fs~~~~hle~sl~~nplq-----~~----~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 495 ILSNKDFSEADKHLERSLEINPLQ-----LG----TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred cccchhHHHHHHHHHHHhhcCccc-----hh----HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 444789999999999999987765 34 449999999999999999999999999999999999999887753
No 137
>KOG1156|consensus
Probab=98.19 E-value=5.5e-06 Score=56.47 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=70.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+|-+|.++..-.+|++|++||+.|+++.+++ ..++..++.+...+|+++...+.-.+-+++.|.+-..|..
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN---------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~ 148 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDN---------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIG 148 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHH
Confidence 5788999999999999999999999999888 5566999999999999999999999999999988777887
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
.++.+.+
T Consensus 149 ~Avs~~L 155 (700)
T KOG1156|consen 149 FAVAQHL 155 (700)
T ss_pred HHHHHHH
Confidence 7776654
No 138
>KOG0551|consensus
Probab=98.17 E-value=1.4e-05 Score=51.02 Aligned_cols=79 Identities=20% Similarity=0.065 Sum_probs=66.2
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
.-|.-|.+..+|..|+.+|.++++....+ ...-+.+|+|.+.+....|+|..|+....+++.++|.+..+++.-+
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCAD-----PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 34777888899999999999999876655 2333678899999999999999999999999999999988887666
Q ss_pred HHHh
Q psy8498 85 VKEG 88 (90)
Q Consensus 85 ~~~~ 88 (90)
.|.-
T Consensus 161 kc~~ 164 (390)
T KOG0551|consen 161 KCLL 164 (390)
T ss_pred HHHH
Confidence 6543
No 139
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.17 E-value=7e-06 Score=36.55 Aligned_cols=31 Identities=42% Similarity=0.587 Sum_probs=27.0
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+.+++++|.+|..+|++++|+.++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4567999999999999999999999999764
No 140
>KOG2076|consensus
Probab=98.16 E-value=3.4e-05 Score=54.26 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=44.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..|......|++++|++.+.++++..|.. +..+..||.+|..+|+.+++..+.-.|--++|++..-|..+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~---------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRN---------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccc---------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 45666677788888888888888888876 22335556665555555555555555555555554444433
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=1.2e-05 Score=45.59 Aligned_cols=58 Identities=16% Similarity=0.003 Sum_probs=45.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
..+++.++...|+|++|+..++.. +.. . ..+.....+|.++...|++++|+..|++|+
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~----~~~--~----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQI----PDE--A----FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhc----cCc--c----hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 357899999999999999998651 111 1 113345779999999999999999999985
No 142
>KOG1130|consensus
Probab=98.14 E-value=2.6e-06 Score=55.99 Aligned_cols=69 Identities=22% Similarity=0.189 Sum_probs=58.7
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
++-|+|..|.-.|+|+.|+..-+.=+++..+.++. ... ...+.|+|+++.-+|+++.|+++|++++.+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr--Aae-RRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR--AAE-RRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH--HHH-HHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 35688999999999999999999999999988665 222 4568999999999999999999999987553
No 143
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=98.14 E-value=9.6e-06 Score=34.31 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
++.++|.++.+.|++++|++.|++.+...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3588999999999999999999999998885
No 144
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.13 E-value=2.9e-05 Score=45.71 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC----------HHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK----------YEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 16 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
++.|.+.++..+...|.+ +..+++.|.++.++.+ +++|+.-|++|+.++|+...+++++|.
T Consensus 7 FE~ark~aea~y~~nP~D---------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD---------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh---------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 455666666666665554 3445777777776644 567888888899999999999999999
Q ss_pred HHhc
Q psy8498 86 KEGV 89 (90)
Q Consensus 86 ~~~~ 89 (90)
++..
T Consensus 78 A~ts 81 (186)
T PF06552_consen 78 AYTS 81 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 145
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.12 E-value=3.8e-05 Score=36.61 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
+++.+|..++++|+|++|.++.+.+|++.|++..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4588999999999999999999999999999887654
No 146
>KOG3824|consensus
Probab=98.11 E-value=9.4e-06 Score=51.74 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=61.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
.+.-..+.|+.++|.+.|+.|+.+.|+. +.++..+|.+....++.-+|..+|.+|+.++|.+..++.+.+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~---------p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTN---------PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCC---------HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3444567899999999999999999988 666799999999999999999999999999999999887754
No 147
>KOG4642|consensus
Probab=98.11 E-value=5.4e-06 Score=50.86 Aligned_cols=74 Identities=18% Similarity=0.109 Sum_probs=65.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
-|.-|.....|+.|+.+|.+|+.+.|.. ++.+.|-+.||.+..+|+.+.....++++++|+...+++.+|.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~---------~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTV---------ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCc---------chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 3566777889999999999999998776 5667999999999999999999999999999998888888887
Q ss_pred HHh
Q psy8498 86 KEG 88 (90)
Q Consensus 86 ~~~ 88 (90)
+..
T Consensus 87 ~~l 89 (284)
T KOG4642|consen 87 WLL 89 (284)
T ss_pred HHH
Confidence 653
No 148
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=98.10 E-value=8.9e-05 Score=39.23 Aligned_cols=65 Identities=25% Similarity=0.266 Sum_probs=53.0
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
....|||..|.+.+.+.++.................+.++|.++...|++++|+..+++++.+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45689999999999999999887755431123344568899999999999999999999998864
No 149
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=98.10 E-value=9.7e-06 Score=33.20 Aligned_cols=31 Identities=45% Similarity=0.658 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
.+.++|.++..+|++++|..++++++++.|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4588999999999999999999999998875
No 150
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.10 E-value=2.2e-05 Score=51.32 Aligned_cols=60 Identities=20% Similarity=0.139 Sum_probs=52.3
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
.-+|.++...+++++|.++|+++++..|+. ..+..++.++.++|+.++|.++|++++.+.
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~~P~~----------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQRPDA----------YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 356999999999999999999999987764 223679999999999999999999998764
No 151
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.09 E-value=8.4e-06 Score=36.30 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=26.7
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+++++|.+|...|++++|+.++++++++....
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 57899999999999999999999999998765
No 152
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.08 E-value=4.8e-05 Score=53.91 Aligned_cols=75 Identities=12% Similarity=-0.116 Sum_probs=66.2
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
.++.++.-.|++.+|++.+++.+...|.+ ..+...+|.++...|.+.+|...++.+..++|.+..+....|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~n---------~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPAN---------QNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 35778888999999999999999999988 555689999999999999999999999999999888888777
Q ss_pred HHHh
Q psy8498 85 VKEG 88 (90)
Q Consensus 85 ~~~~ 88 (90)
.+.-
T Consensus 492 ~~al 495 (822)
T PRK14574 492 ETAM 495 (822)
T ss_pred HHHH
Confidence 6653
No 153
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.06 E-value=6.6e-05 Score=50.76 Aligned_cols=73 Identities=12% Similarity=0.053 Sum_probs=62.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
...++.+.|++++|+.++++.-+...+. ...+...|.++.++|++++|...|+..+..+|++..-+..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk---------~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDK---------LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 4678899999999999998866665544 4456889999999999999999999999999999888877776
Q ss_pred HH
Q psy8498 86 KE 87 (90)
Q Consensus 86 ~~ 87 (90)
+.
T Consensus 81 ~~ 82 (517)
T PF12569_consen 81 AL 82 (517)
T ss_pred HH
Confidence 65
No 154
>PRK10941 hypothetical protein; Provisional
Probab=98.06 E-value=6.9e-05 Score=46.83 Aligned_cols=72 Identities=13% Similarity=-0.038 Sum_probs=63.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.|+..+|.+.++++.|+.+.+..+.+.|+. ...+ ...|.+|.++|.+..|...++.-++..|+++.+-..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d-----p~e~----RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPED-----PYEI----RDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC-----HHHH----HHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 6789999999999999999999999999987 3333 778999999999999999999999999988877544
Q ss_pred H
Q psy8498 83 I 83 (90)
Q Consensus 83 l 83 (90)
.
T Consensus 255 k 255 (269)
T PRK10941 255 R 255 (269)
T ss_pred H
Confidence 3
No 155
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.05 E-value=4e-05 Score=50.20 Aligned_cols=83 Identities=13% Similarity=-0.011 Sum_probs=57.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC----C-----------------------cchhhHH--HHHHhHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGG----E-----------------------IIADKWE--PLLNNLGHVNRK 55 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~-----------------------~~~~~~~--~~~~~lg~~~~~ 55 (90)
.++..+...|++++|++.++++++..|+... . ...+.-+ ..+..+|.++.+
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~ 347 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK 347 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 4566777778888888888877776665531 0 0000113 456788999999
Q ss_pred hcCHHHHHHHHH--HHHhhCCCChHHHHHHHHHHh
Q psy8498 56 LKKYEEALEFHK--QALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 56 ~g~~~~A~~~~~--~al~~~~~~~~~~~~l~~~~~ 88 (90)
.|++++|.++|+ ++++..|+... +..+|.++.
T Consensus 348 ~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~ 381 (409)
T TIGR00540 348 HGEFIEAADAFKNVAACKEQLDAND-LAMAADAFD 381 (409)
T ss_pred cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHH
Confidence 999999999999 57778875544 447776654
No 156
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.03 E-value=9.6e-05 Score=48.33 Aligned_cols=74 Identities=11% Similarity=-0.061 Sum_probs=56.9
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK 86 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 86 (90)
+.+....|+++.|..+|+++.+..|+.. + ......+..+...|++++|...+++..+.+|+++.++..++.+
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~-------~-~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~ 196 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQ-------L-PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA 196 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcch-------H-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5555888999999999999887655431 0 1113358899999999999999999999999999888777766
Q ss_pred Hh
Q psy8498 87 EG 88 (90)
Q Consensus 87 ~~ 88 (90)
+.
T Consensus 197 ~~ 198 (398)
T PRK10747 197 YI 198 (398)
T ss_pred HH
Confidence 54
No 157
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.02 E-value=8.7e-05 Score=48.63 Aligned_cols=75 Identities=9% Similarity=-0.124 Sum_probs=57.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
.|.++..+|+++.|..+++++.+..|+.+. .+....+.++...|++++|.+.+++.++..|+++.++..++.
T Consensus 124 aA~aa~~~g~~~~A~~~l~~a~~~~p~~~l--------~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~ 195 (409)
T TIGR00540 124 AAEAAQQRGDEARANQHLEEAAELAGNDNI--------LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEE 195 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcCch--------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 467778888888888888888776554310 112335888888999999999999999999999888877777
Q ss_pred HHh
Q psy8498 86 KEG 88 (90)
Q Consensus 86 ~~~ 88 (90)
++.
T Consensus 196 ~~~ 198 (409)
T TIGR00540 196 AYI 198 (409)
T ss_pred HHH
Confidence 654
No 158
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.01 E-value=5.5e-05 Score=51.13 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=57.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
.-++..|...|++++|+++..+||++-|.. +..+..-|.++.+.|++.+|.++.+.|..+++.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTL---------VELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 456888999999999999999999997765 5667899999999999999999999999998754
No 159
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.00 E-value=8e-05 Score=49.49 Aligned_cols=76 Identities=17% Similarity=0.051 Sum_probs=65.1
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
...+..+...|++++|+..++..++..|++ +-.....+.++.+.++.++|.+.+++++.++|..+....++
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N---------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDN---------PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 345778899999999999999999988876 33447789999999999999999999999999887777788
Q ss_pred HHHHh
Q psy8498 84 VVKEG 88 (90)
Q Consensus 84 ~~~~~ 88 (90)
|.++.
T Consensus 381 a~all 385 (484)
T COG4783 381 AQALL 385 (484)
T ss_pred HHHHH
Confidence 87764
No 160
>KOG0624|consensus
Probab=98.00 E-value=2.1e-05 Score=50.85 Aligned_cols=67 Identities=15% Similarity=-0.049 Sum_probs=46.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhH------------------------------HHHHHhHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKW------------------------------EPLLNNLGHVNR 54 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------------------------~~~~~~lg~~~~ 54 (90)
.+|.-+...|++..|+++|..|++..|++ .... ...-...|.++.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~-----Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNN-----YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchh-----HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 57888899999999999999999998876 1110 001133366666
Q ss_pred HhcCHHHHHHHHHHHHhhCCCC
Q psy8498 55 KLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 55 ~~g~~~~A~~~~~~al~~~~~~ 76 (90)
++|++++|...|.+.++.+|++
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc
Confidence 6777777777777776666643
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.00 E-value=2.5e-05 Score=38.44 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 54 RKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 54 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
.+.|++++|++.|+++++.+|+++.++..+|.++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 37 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK 37 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999999999999998753
No 162
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.00 E-value=1.9e-05 Score=49.80 Aligned_cols=47 Identities=32% Similarity=0.367 Sum_probs=40.5
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
+.+++.++.++..+|+|++|.+.+++++..+|.++.++.++..+...
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH 247 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 56678999999999999999999999999999999999998887543
No 163
>KOG1174|consensus
Probab=97.99 E-value=6.3e-05 Score=49.62 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=60.3
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..++..+...|.+++++.++++.+...++. ..++.+|.++.-.+.+++|.++|..|+.++|++-.+.-.+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~----------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPDV----------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhcccc----------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 346778899999999999999999988763 4568899999999999999999999999999887766544
No 164
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.99 E-value=6.6e-05 Score=46.36 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=62.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH---H
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST---F 80 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~ 80 (90)
-+-|..-.+.|+|++|++.|++..+..|..... ..++..++.++++.+++++|+...++-+.+.|.++.+ +
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 355777888999999999999999887766333 5567889999999999999999999999999966544 4
Q ss_pred HHHHHH
Q psy8498 81 CCIVVK 86 (90)
Q Consensus 81 ~~l~~~ 86 (90)
+..|.+
T Consensus 112 YlkgLs 117 (254)
T COG4105 112 YLKGLS 117 (254)
T ss_pred HHHHHH
Confidence 444443
No 165
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.98 E-value=9.3e-05 Score=41.79 Aligned_cols=60 Identities=17% Similarity=0.000 Sum_probs=50.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+..++..+...|++++|+..+++++...|-+ ...+..+-.++..+|+..+|++.|++...
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYD---------EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456778889999999999999999998877 55568899999999999999999999864
No 166
>KOG1127|consensus
Probab=97.98 E-value=3.3e-05 Score=55.20 Aligned_cols=71 Identities=15% Similarity=-0.021 Sum_probs=63.0
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
-..+.+|++|++..+++++..|++ .- ....+|..+...|+ .++|.+.|..|.+++|++.-++..++..|.
T Consensus 12 al~nk~YeealEqskkvLk~dpdN-----Yn----A~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye 82 (1238)
T KOG1127|consen 12 ALRNKEYEEALEQSKKVLKEDPDN-----YN----AQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYE 82 (1238)
T ss_pred HHhhccHHHHHHHHHHHHhcCCCc-----ch----hhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence 356889999999999999999887 33 34889999999999 999999999999999999999999998875
Q ss_pred c
Q psy8498 89 V 89 (90)
Q Consensus 89 ~ 89 (90)
.
T Consensus 83 ~ 83 (1238)
T KOG1127|consen 83 R 83 (1238)
T ss_pred c
Confidence 3
No 167
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.98 E-value=2e-05 Score=39.34 Aligned_cols=41 Identities=24% Similarity=0.201 Sum_probs=36.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 49 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 49 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
|..+|...+++++|++++++++.++|.++..+...|.++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 41 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ 41 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35678899999999999999999999999999999988754
No 168
>KOG2471|consensus
Probab=97.97 E-value=3e-05 Score=51.99 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=68.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHh-h----CCCcc----hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQ-L----GGEII----ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~----~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
++|+|-++.++|-|.-+..+|++|++.... . .+... ....-.+++|.|..|...|+.-.|.+||.++....
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 589999999999999999999999973332 1 11100 00112356899999999999999999999999998
Q ss_pred CCChHHHHHHHHHHh
Q psy8498 74 PMKASTFCCIVVKEG 88 (90)
Q Consensus 74 ~~~~~~~~~l~~~~~ 88 (90)
..+|..|..++.|..
T Consensus 366 h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 366 HRNPRLWLRLAECCI 380 (696)
T ss_pred hcCcHHHHHHHHHHH
Confidence 889999999988764
No 169
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.90 E-value=1.6e-05 Score=34.38 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=22.7
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 65 FHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 65 ~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
+|++|++++|+++.+++++|.++..
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN 25 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999864
No 170
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.89 E-value=1.4e-05 Score=33.83 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=28.2
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
++.++|.++...|++++|.+.|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3568999999999999999999999998875
No 171
>PRK11906 transcriptional regulator; Provisional
Probab=97.88 E-value=6.8e-05 Score=49.72 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=58.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
+..+|.+....++++.|...|++|+.+.|.. +.++...|.+..-.|+.++|.+..++|++++|.-
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~---------A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIHSTDI---------ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhcCCcc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 4567888899999999999999999998887 5556999999999999999999999999999943
No 172
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.87 E-value=0.00023 Score=40.50 Aligned_cols=69 Identities=10% Similarity=-0.043 Sum_probs=59.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC---------------HHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK---------------YEEALEFHK 67 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---------------~~~A~~~~~ 67 (90)
...++-+|.+.++|++|+..+++-+++.|....- .-+++..|.++.++.. ..+|...|+
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v------dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~ 123 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV------DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFE 123 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc------cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHH
Confidence 3578999999999999999999999999998433 3456888999988887 899999999
Q ss_pred HHHhhCCCCh
Q psy8498 68 QALVVAPMKA 77 (90)
Q Consensus 68 ~al~~~~~~~ 77 (90)
+.+...|+..
T Consensus 124 ~lv~~yP~S~ 133 (142)
T PF13512_consen 124 QLVRRYPNSE 133 (142)
T ss_pred HHHHHCcCCh
Confidence 9999988654
No 173
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.82 E-value=0.00084 Score=37.37 Aligned_cols=68 Identities=16% Similarity=0.029 Sum_probs=55.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc--chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEI--IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
.++.++...|+|++++..-.+++..+.+.+.-. ....|..+-++-|..+...|+.++|+..|+.+-+.
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 467788999999999999999999998885432 35678888899999999999999999999998764
No 174
>KOG1941|consensus
Probab=97.81 E-value=0.00028 Score=46.09 Aligned_cols=69 Identities=19% Similarity=0.103 Sum_probs=60.7
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
++.++++.+..+|+...|.++.+++.++.-..++. ...+.++..+|.+|+..|+.+.|..-|++|+...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr---a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR---ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 56789999999999999999999999999888776 3345677889999999999999999999998653
No 175
>KOG4555|consensus
Probab=97.80 E-value=0.00025 Score=40.23 Aligned_cols=69 Identities=13% Similarity=-0.039 Sum_probs=57.0
Q ss_pred CchhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 1 MDLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 1 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
++++|-+..+.-+|+.++|+.-+.+|+++.... ....-..+..-|.+|+.+|+-+.|...|+.+-++..
T Consensus 78 SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-----trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 78 SAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-----TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-----chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 367899999999999999999999999987544 222233467789999999999999999999987754
No 176
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.78 E-value=5.3e-05 Score=47.79 Aligned_cols=68 Identities=25% Similarity=0.151 Sum_probs=53.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCH-HHHHHHHHHHHhhCCCChHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY-EEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~ 79 (90)
++.++.++..+|+|++|+..++++++..|.. +.++.|+..+...+|+. +.+.++..+....+|+++-.
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~---------~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPND---------PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH---------HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 5678999999999999999999998765544 55668999999999998 66777888877788876643
No 177
>KOG3060|consensus
Probab=97.78 E-value=0.00037 Score=43.29 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=59.5
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCC-------------C----------------cchhhHHHHHHhHHHHHHHhc
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGG-------------E----------------IIADKWEPLLNNLGHVNRKLK 57 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~----------------~~~~~~~~~~~~lg~~~~~~g 57 (90)
|+.+...|+|++|+++|...++-.|.+.. . .-.+.| ..++.+|...|
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW----~eLaeiY~~~~ 168 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAW----HELAEIYLSEG 168 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHhHh
Confidence 56677788888888888887765555310 0 114445 88999999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498 58 KYEEALEFHKQALVVAPMKASTFCCIVVKE 87 (90)
Q Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 87 (90)
+|++|.=|+++.+-+.|-++..+..+|.++
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999998887777777654
No 178
>KOG1127|consensus
Probab=97.78 E-value=4e-05 Score=54.77 Aligned_cols=76 Identities=18% Similarity=0.130 Sum_probs=64.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+...|..|.+.+++..|+..|+.|+++.|.+ ...| ..+|.+|-..|++..|++.|.++..++|.+.-..+.
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD-----~n~W----~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk 635 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-----YNLW----LGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFK 635 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchh-----HHHH----HHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHH
Confidence 3457888999999999999999999999988 4555 889999999999999999999999999977666666
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
.+...
T Consensus 636 ~A~~e 640 (1238)
T KOG1127|consen 636 EAVME 640 (1238)
T ss_pred HHHHH
Confidence 55544
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00027 Score=44.49 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE 87 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 87 (90)
+.-+.-.+.-+...|.+ .+.| .-||.+|..+|+++.|...|.+|.++.|+++..+..+|.++
T Consensus 139 ~~l~a~Le~~L~~nP~d-----~egW----~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL 200 (287)
T COG4235 139 EALIARLETHLQQNPGD-----AEGW----DLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL 200 (287)
T ss_pred HHHHHHHHHHHHhCCCC-----chhH----HHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33444444445544444 6677 88999999999999999999999999999999988887664
No 180
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.75 E-value=0.00043 Score=46.39 Aligned_cols=80 Identities=14% Similarity=-0.035 Sum_probs=60.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC-ChHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-KASTFCCI 83 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l 83 (90)
.-|.++...|+.++|++.|++++.....- .+....+++.+|.++.-+++|++|.++|.+..+.+.- .+.-.+..
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 45889999999999999999998644333 2233446799999999999999999999999987642 23334456
Q ss_pred HHHHhc
Q psy8498 84 VVKEGV 89 (90)
Q Consensus 84 ~~~~~~ 89 (90)
|.|+.+
T Consensus 347 a~c~~~ 352 (468)
T PF10300_consen 347 AACLLM 352 (468)
T ss_pred HHHHHh
Confidence 665543
No 181
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.74 E-value=9.7e-05 Score=45.34 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=53.2
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 8 LSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 8 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
....+.+|.+.|.+.|.+++++.|+- ...| +++|....+.|+++.|.+.|++.++++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w-----~~gw----fR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEW-----AAGW----FRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchh-----hhhh----hhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34567899999999999999998876 4555 999999999999999999999999999854
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.73 E-value=0.00059 Score=42.04 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=54.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc------------------CHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK------------------KYEEALE 64 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g------------------~~~~A~~ 64 (90)
...+|.+|.+.++|++|+..|++.++..|+++.- +.+++.+|.++..++ ...+|+.
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 3578999999999999999999999999998443 445688888765554 1357889
Q ss_pred HHHHHHhhCCCC
Q psy8498 65 FHKQALVVAPMK 76 (90)
Q Consensus 65 ~~~~al~~~~~~ 76 (90)
.+++.+...|+.
T Consensus 146 ~~~~li~~yP~S 157 (243)
T PRK10866 146 DFSKLVRGYPNS 157 (243)
T ss_pred HHHHHHHHCcCC
Confidence 999999998854
No 183
>KOG0550|consensus
Probab=97.72 E-value=0.00023 Score=46.84 Aligned_cols=63 Identities=22% Similarity=0.098 Sum_probs=57.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
+-|.+.+....|+..+|+.-...|+++.+.. ...+...|.|+.-+++|++|.++|++|++...
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~sy---------ikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDSSY---------IKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4578899999999999999999999997766 67789999999999999999999999998754
No 184
>KOG2376|consensus
Probab=97.72 E-value=0.00076 Score=46.12 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=59.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhC-----C-CcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLG-----G-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
+.|.+-++...|+|.+|++.+++|+++-.+.- + +........+...++.++..+|+.++|...|...++.+|-+
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 45889999999999999999999977655541 1 12233445677889999999999999999999999988744
Q ss_pred h
Q psy8498 77 A 77 (90)
Q Consensus 77 ~ 77 (90)
.
T Consensus 258 ~ 258 (652)
T KOG2376|consen 258 E 258 (652)
T ss_pred c
Confidence 3
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.70 E-value=0.00056 Score=40.92 Aligned_cols=69 Identities=14% Similarity=-0.003 Sum_probs=52.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-----------CHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----------KYEEALEFHKQALV 71 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~ 71 (90)
...+|.++...|+|++|+..|++-++..|.... .+.+++.+|.++.++. ...+|+..|++.+.
T Consensus 45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK------ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT------HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999998733 2455677888766553 45589999999999
Q ss_pred hCCCCh
Q psy8498 72 VAPMKA 77 (90)
Q Consensus 72 ~~~~~~ 77 (90)
..|+..
T Consensus 119 ~yP~S~ 124 (203)
T PF13525_consen 119 RYPNSE 124 (203)
T ss_dssp H-TTST
T ss_pred HCcCch
Confidence 988654
No 186
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.69 E-value=0.0019 Score=39.17 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=53.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh----CCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL----GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
...++=+|...|+.+....++++|++...+. ..+.....-..+++-+|.+.++.|++++|+++|.+.+...
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3467788999999888888888888777765 1111112223466789999999999999999999998654
No 187
>PRK11906 transcriptional regulator; Provisional
Probab=97.67 E-value=0.00031 Score=46.73 Aligned_cols=66 Identities=11% Similarity=-0.041 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
.+-.+|.++.++|+++.+.+ +.++..+|.+..-.|+++.|...|++|+.++|+.+.+++..|.+..
T Consensus 318 ~~~~~a~~~A~rAveld~~D---------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~ 383 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVD---------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF 383 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 44567888888888887776 6677999999999999999999999999999999999988887653
No 188
>KOG1941|consensus
Probab=97.66 E-value=0.00049 Score=44.97 Aligned_cols=70 Identities=17% Similarity=0.076 Sum_probs=54.5
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhC-CCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLG-GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
..+|..+....|+++|..+..+|+++....+ ++.........++.++..++.+|+...|.++.+++.++.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3567778888888888888888888877664 333333444567889999999999999999999999875
No 189
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.63 E-value=0.00014 Score=44.46 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=56.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
-|+.|...|-..-|.--|.+++.+.|+. +.++|.+|.-+...|+|+.|.+.|.-.++++|...-++.|.|.
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~P~m---------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIRPDM---------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcCCCc---------HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 3556666666666777777888887766 7788999999999999999999999999999977666665543
No 190
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.60 E-value=0.00035 Score=45.92 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=49.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 67 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 67 (90)
+.-.+..+...++++.|+.+.+++.+..|.. ...| ..|+.+|..+|++++|+-...
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~-----f~~W----~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSE-----FETW----YQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchh-----HHHH----HHHHHHHHhcCCHHHHHHHHh
Confidence 3445778999999999999999999999988 5666 999999999999999997665
No 191
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.00053 Score=44.03 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=16.5
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
.-+|.+....|+|++|++.++.+++-+|
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 3356666666666666666666665555
No 192
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.57 E-value=7.8e-05 Score=30.27 Aligned_cols=30 Identities=23% Similarity=0.063 Sum_probs=26.8
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVK 31 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 31 (90)
.+.++|.++..++++++|+.+|++++++.|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 357899999999999999999999998754
No 193
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.52 E-value=0.0012 Score=46.92 Aligned_cols=68 Identities=9% Similarity=-0.158 Sum_probs=55.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
...+|.++...|++++|...+++++......+... .....+.++|.++...|++++|..++++++.+.
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~---~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH---YALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999887664331 112356889999999999999999999999863
No 194
>KOG1128|consensus
Probab=97.51 E-value=0.00017 Score=50.11 Aligned_cols=68 Identities=21% Similarity=0.161 Sum_probs=59.9
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (90)
.+.+.|-+..+.+++..|..+|...+.+.|++ .+.| +|++.+|.+.|+..+|...+++|++.+-++..
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-----~eaW----nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~ 588 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-----AEAW----NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ 588 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-----hhhh----hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe
Confidence 35678999999999999999999999999988 6677 99999999999999999999999988754433
No 195
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.50 E-value=0.0046 Score=34.80 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=56.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcc-------------hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEII-------------ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
|......++.+.++..+++++.+....--... ...+..+...++..+...|++++|++.+++++.++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 55566778999999999999998876522111 11123345667888999999999999999999999
Q ss_pred CCChHHHHHHHHHH
Q psy8498 74 PMKASTFCCIVVKE 87 (90)
Q Consensus 74 ~~~~~~~~~l~~~~ 87 (90)
|-+-..+..+-.++
T Consensus 93 P~~E~~~~~lm~~~ 106 (146)
T PF03704_consen 93 PYDEEAYRLLMRAL 106 (146)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 98777766554444
No 196
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.48 E-value=0.0018 Score=46.07 Aligned_cols=69 Identities=17% Similarity=0.033 Sum_probs=57.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
.+++.++...|++++|...+++++...+..+.. .....++..+|.++...|+.++|.+.+.+|+++...
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~---~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLM---SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 467889999999999999999999987765433 122445688999999999999999999999988653
No 197
>KOG0624|consensus
Probab=97.46 E-value=0.00089 Score=43.57 Aligned_cols=71 Identities=11% Similarity=-0.015 Sum_probs=51.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
+-.++..-+++.+|+....+++++.|++ +.++...+.+|.--..|+.|+..|++|.+.++++..+.-.+-.
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~~d---------v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDPDD---------VQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCchH---------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3456667777888888888888877766 5556777888888888888888888888888776665544433
No 198
>KOG3785|consensus
Probab=97.44 E-value=0.00048 Score=44.98 Aligned_cols=69 Identities=19% Similarity=0.066 Sum_probs=49.4
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498 11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE 87 (90)
Q Consensus 11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 87 (90)
....||..|+..++-.+...++.. .++-..+|.|++.+|+|++|+..|+-....+.-++....+++.|+
T Consensus 33 ls~rDytGAislLefk~~~~~EEE--------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEE--------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCK 101 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhh--------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHH
Confidence 346788888888877765433321 123356999999999999999999998876555556666776654
No 199
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=97.43 E-value=0.0028 Score=35.36 Aligned_cols=67 Identities=13% Similarity=-0.010 Sum_probs=53.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC------cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGE------IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
..+|....+.+++-.++-+|++|+.+..+.... .....+....+|||.+++.+|+.+=.++|.+-|-
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 457888899999999999999999999887321 1122233446899999999999999999987654
No 200
>KOG3785|consensus
Probab=97.43 E-value=0.0021 Score=42.12 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=18.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALS 28 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~ 28 (90)
+|.++...|+|++|...|..+.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMN 85 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhc
Confidence 57788888888888888877665
No 201
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.0011 Score=42.57 Aligned_cols=79 Identities=11% Similarity=-0.058 Sum_probs=52.4
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
.+-.+|....++++|++.-++..++.++.-. ...+..+..++..+.-..+.+.|....++|++.+|+...+-..+|
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k~~~q~~~----~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVKLGGQTYR----VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCccch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 4556677777777777776666666554421 222344566666666677888888888888888887776666666
Q ss_pred HHH
Q psy8498 85 VKE 87 (90)
Q Consensus 85 ~~~ 87 (90)
.+.
T Consensus 222 ~v~ 224 (389)
T COG2956 222 RVE 224 (389)
T ss_pred HHH
Confidence 554
No 202
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.39 E-value=0.0038 Score=34.14 Aligned_cols=75 Identities=15% Similarity=0.035 Sum_probs=57.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-----------HHHHHHHHHHHHhhCC
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-----------YEEALEFHKQALVVAP 74 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~~ 74 (90)
.+..+...|++-+|++..++.+...++.... +..+...|.++.++.. .-.|+++|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 3567889999999999999999987766332 2445666777766554 4568899999999999
Q ss_pred CChHHHHHHHHH
Q psy8498 75 MKASTFCCIVVK 86 (90)
Q Consensus 75 ~~~~~~~~l~~~ 86 (90)
..+..++.+|.=
T Consensus 76 ~~A~~L~~la~~ 87 (111)
T PF04781_consen 76 DSAHSLFELASQ 87 (111)
T ss_pred hHHHHHHHHHHH
Confidence 877777777653
No 203
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.35 E-value=0.002 Score=43.81 Aligned_cols=44 Identities=11% Similarity=-0.028 Sum_probs=37.2
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
.++..+|..+...|++++|...+++|+.++| +..+|..+|.++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 3456678888889999999999999999999 4778888887764
No 204
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.29 E-value=0.001 Score=43.40 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=51.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+.-+|..|.+.+.|.+|.++|+.|++..+. .+.+..+|.++-++|+..+|-+.+++++.+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s----------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPS----------ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCC----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 345899999999999999999999987554 334488999999999999999999999854
No 205
>KOG4648|consensus
Probab=97.29 E-value=0.0042 Score=40.63 Aligned_cols=69 Identities=19% Similarity=0.042 Sum_probs=60.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (90)
+.|-+.+|.+..+|..|+.-+..|+.+.... .+.|.+.|.+...+|...+|.+.++.+|++.|++....
T Consensus 134 ~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y---------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 134 HINRALAYLKQKSFAQAEEDCEAAIALDKLY---------VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH---------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHH
Confidence 4578999999999999999999999986655 77789999999999999999999999999999765443
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.24 E-value=0.0042 Score=37.39 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=19.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALS 28 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~ 28 (90)
.+|....+.|++.+|+.+|++++.
T Consensus 94 rLa~al~elGr~~EA~~hy~qals 117 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALS 117 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhc
Confidence 567778888888888888888775
No 207
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.21 E-value=0.0029 Score=41.44 Aligned_cols=81 Identities=20% Similarity=0.085 Sum_probs=57.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhh---------C--CC-----------cchhhHHHHHHhHHHHHHHhcCHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQL---------G--GE-----------IIADKWEPLLNNLGHVNRKLKKYEEALE 64 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~---------~--~~-----------~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 64 (90)
+.=+...|++++|.+..+.+++..-+. . +. ......+..+..+|.++.+.+.|.+|.+
T Consensus 270 a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 270 AERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHH
Confidence 344677899999999988888765442 0 00 0011114456889999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 65 FHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 65 ~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
+++.|++..|+ ...+..+|.++.
T Consensus 350 ~leaAl~~~~s-~~~~~~la~~~~ 372 (400)
T COG3071 350 ALEAALKLRPS-ASDYAELADALD 372 (400)
T ss_pred HHHHHHhcCCC-hhhHHHHHHHHH
Confidence 99999999874 455666776654
No 208
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.19 E-value=0.00044 Score=42.37 Aligned_cols=67 Identities=12% Similarity=-0.019 Sum_probs=57.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (90)
++-+|.-+...|+|+.|.+.|...+++.|.. .-++.|.|..++--|+++-|.+.+.+--+-+|++|-
T Consensus 102 fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---------~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 102 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred HHHHHHHHHhcccchHHHHHhhhHhccCCcc---------hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 5678999999999999999999999998876 334577888888999999999999998888887763
No 209
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.17 E-value=0.0038 Score=43.61 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=34.9
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
++..+-..+...|+++.|...+++.+.+.|++...|..+..+|+
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 45777788888888888888888888888887777777776665
No 210
>KOG3364|consensus
Probab=97.15 E-value=0.0023 Score=36.33 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 16 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (90)
..+.+.+++..++ . .. .+....+.+.|+..+++.++|+.++++....++..|++..+.
T Consensus 51 v~~GI~iLe~l~~-~-~~-----~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 51 VQEGIVILEDLLK-S-AH-----PERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHhHHHHHHHhh-h-cC-----cccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3446666666665 1 11 122245668899999999999999999999999999887664
No 211
>KOG1174|consensus
Probab=97.15 E-value=0.0039 Score=41.52 Aligned_cols=69 Identities=14% Similarity=-0.036 Sum_probs=46.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
-|..+..++++++|+-.|+.|+.+.|-. ..+|.-+-++|.-.|++.+|.-....++..-|.++.++.-+
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLAPYR---------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcchhh---------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 3677788888888888888888887655 33445566666666666666666666666555555554444
No 212
>KOG0495|consensus
Probab=97.12 E-value=0.0036 Score=43.76 Aligned_cols=59 Identities=20% Similarity=0.155 Sum_probs=30.6
Q ss_pred hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498 13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (90)
+++.++|+++++++++.+|.. .+.+..+|.++..+++.+.|.+.|.+.++..|..+..+
T Consensus 664 ld~~eeA~rllEe~lk~fp~f---------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDF---------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCch---------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence 445555555555555555544 22225555555555555555555555555555444333
No 213
>KOG4340|consensus
Probab=97.09 E-value=0.0014 Score=42.02 Aligned_cols=60 Identities=22% Similarity=0.129 Sum_probs=50.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
++|.|-+..+.|+|++|++-|+.|++...-. +..-++++.++++.|+++.|+++..+.+.
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvsGyq---------pllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---------PLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhcCCC---------chhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5678888999999999999999999974332 33458899999999999999999877664
No 214
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=97.07 E-value=0.0016 Score=28.85 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=26.6
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
++..||.+-...++|++|+..|++|+.+.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999874
No 215
>KOG4340|consensus
Probab=97.06 E-value=0.0047 Score=39.71 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=46.4
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498 11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (90)
.+..+|+.|+++...-.+..|++ ...+.-+|.||+...+|..|.+||+|.-++.|+...
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~---------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q 79 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRS---------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ 79 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 66677888888877766666544 233477999999999999999999999998885443
No 216
>KOG0545|consensus
Probab=97.04 E-value=0.0042 Score=38.81 Aligned_cols=67 Identities=18% Similarity=-0.032 Sum_probs=60.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (90)
+.|...++...|+|-+++++....++..|.+ .++++.-|.++...=+.++|...++++++++|.-..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~n---------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGN---------VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 5688999999999999999999999998887 777899999999999999999999999999985443
No 217
>KOG4814|consensus
Probab=97.03 E-value=0.0057 Score=42.66 Aligned_cols=72 Identities=18% Similarity=0.145 Sum_probs=60.4
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (90)
|-+.-+.++.+|..++++|...++-.+.+..+ ..-++...+++.||.++.+.|.|++++++|=+.+|.++-.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~ 430 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC 430 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence 45667889999999999999999988876433 2226677999999999999999999999999999877654
No 218
>KOG1586|consensus
Probab=97.03 E-value=0.0056 Score=37.96 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=46.8
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-cCHHHHHHHHHHHHhhC
Q psy8498 11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-KKYEEALEFHKQALVVA 73 (90)
Q Consensus 11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~ 73 (90)
.+.+++++|..+++++++++.+.+.= ..-+.-+..+|..|..- .++++|+.+|+++-+..
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf---~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRF---TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHH---HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34569999999999999999887432 22244567889998774 99999999999998764
No 219
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.01 E-value=0.0054 Score=32.35 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=31.4
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE 36 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 36 (90)
++.++|.++...|++++|+..+++++++..+.++.
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 35688999999999999999999999999998654
No 220
>KOG0495|consensus
Probab=96.96 E-value=0.0053 Score=43.00 Aligned_cols=69 Identities=20% Similarity=0.121 Sum_probs=54.6
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
-....+++.|..+|.+|....+. +.+++.-+.+.+-++..++|++..+++++..|.....+..+|+++-
T Consensus 628 e~en~e~eraR~llakar~~sgT----------eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSISGT----------ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE 696 (913)
T ss_pred hhccccHHHHHHHHHHHhccCCc----------chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH
Confidence 44566777777777777664332 3345778899999999999999999999999999999999998763
No 221
>KOG0376|consensus
Probab=96.94 E-value=0.00039 Score=46.29 Aligned_cols=80 Identities=15% Similarity=0.067 Sum_probs=44.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC----C---------------------cchhhHHHHHHhHHHHHHHhcCH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGG----E---------------------IIADKWEPLLNNLGHVNRKLKKY 59 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~---------------------~~~~~~~~~~~~lg~~~~~~g~~ 59 (90)
+-+.....-++|+.|+..|.+|+++.|.... + .......++|..-|.+.-.++++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 3445556667777777777777777664300 0 00111133445555666666666
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 60 EEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
.+|+..|+....+.|+++.+...+-
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 6666666666666665555544443
No 222
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.93 E-value=0.0061 Score=31.36 Aligned_cols=61 Identities=26% Similarity=0.242 Sum_probs=48.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
|+=+....+..+|+..++++++..++.. .. -.++..+..+|...|+|++++++.-+=+.+.
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~-----~r-f~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDRE-----DR-FRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688999999999999999887752 22 3456778999999999999999988866553
No 223
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.93 E-value=0.018 Score=42.38 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=11.9
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+.+-..|.+.|++++|.+.|++..+
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444444454444444444443
No 224
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.93 E-value=0.016 Score=39.33 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCC-----c-----------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC--Ch
Q psy8498 16 YTVAENCFMEALSKVKQLGGE-----I-----------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM--KA 77 (90)
Q Consensus 16 ~~~A~~~~~~al~~~~~~~~~-----~-----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~ 77 (90)
..+|+++|+++++..+..-.. + .......+..++|.|.+++|+.++|++.++..++..|. +-
T Consensus 216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l 295 (539)
T PF04184_consen 216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNL 295 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchh
Confidence 578899999999877765111 0 00111234578999999999999999999999988773 34
Q ss_pred HHHHHHHHHH
Q psy8498 78 STFCCIVVKE 87 (90)
Q Consensus 78 ~~~~~l~~~~ 87 (90)
..+.++-.++
T Consensus 296 ~IrenLie~L 305 (539)
T PF04184_consen 296 NIRENLIEAL 305 (539)
T ss_pred hHHHHHHHHH
Confidence 4555554443
No 225
>KOG4507|consensus
Probab=96.90 E-value=0.0076 Score=41.84 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=32.3
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.+..+|..+.-+.+.+.|++.+++|+..+|+++..-..+
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 456779999999999999999999999999877664433
No 226
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.87 E-value=0.0021 Score=30.56 Aligned_cols=30 Identities=13% Similarity=-0.053 Sum_probs=26.0
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
..++..+.+.|+|++|.++.+.++++.|++
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 467899999999999999999999999877
No 227
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=96.87 E-value=0.0018 Score=26.03 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=21.0
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~ 68 (90)
....+|.++..+|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 457899999999999999998764
No 228
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.84 E-value=0.036 Score=32.29 Aligned_cols=77 Identities=13% Similarity=-0.083 Sum_probs=55.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+..+-...++.++++..+....-+.|.. +..-.--|.++...|+|.+|++.++....-.|..+.+.--
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~---------~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEF---------PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 3455566667778888888888777777665 3333667888888999999999999877777766665555
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
++.|+.
T Consensus 84 lA~CL~ 89 (160)
T PF09613_consen 84 LALCLY 89 (160)
T ss_pred HHHHHH
Confidence 666553
No 229
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.82 E-value=0.024 Score=35.05 Aligned_cols=63 Identities=16% Similarity=0.006 Sum_probs=48.9
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 69 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 69 (90)
..+|..|...|+|++|.++|+.+.....+.++.. ....++..+..|.++.|+.+..+.+.-+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~---l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWS---LLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3678889999999999999999988777766542 22445688899999999988887765544
No 230
>PLN03077 Protein ECB2; Provisional
Probab=96.82 E-value=0.019 Score=41.10 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=23.7
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
..+-..++..|+.+.+....++.+++.|+++..+..++.+|+
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 333334444555555555555556666766666666666654
No 231
>KOG4642|consensus
Probab=96.78 E-value=0.0086 Score=37.21 Aligned_cols=61 Identities=23% Similarity=0.148 Sum_probs=55.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+.|-+.+|.+..+++....-.++|+++.|.. ...++.+|.++.....|++|+...++|..+
T Consensus 47 ~tnralchlk~~~~~~v~~dcrralql~~N~---------vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 47 YTNRALCHLKLKHWEPVEEDCRRALQLDPNL---------VKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhhHHHHHHHhhhhhhhhhhHHHHHhcChHH---------HHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3567889999999999999999999999988 677799999999999999999999999654
No 232
>KOG2053|consensus
Probab=96.77 E-value=0.0084 Score=42.92 Aligned_cols=60 Identities=22% Similarity=0.059 Sum_probs=46.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
|.++.++|+.++|..+++..-...+.+ ..++..+-.||+++|++++|..+|+++++.+|+
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~D---------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGTD---------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCCc---------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 677888899998885555433332221 345688999999999999999999999999996
No 233
>KOG1308|consensus
Probab=96.77 E-value=0.00014 Score=46.78 Aligned_cols=73 Identities=21% Similarity=0.115 Sum_probs=50.0
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498 8 LSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE 87 (90)
Q Consensus 8 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 87 (90)
.-....|+++.|++.|-+++++-|.. +.++-.-+.++.++++...|++.+..++.++|+.+..|--.|.++
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~---------a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~ 192 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPL---------AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE 192 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCch---------hhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH
Confidence 34556788888888888888886665 444566777777777777777777777777776555554444444
Q ss_pred hc
Q psy8498 88 GV 89 (90)
Q Consensus 88 ~~ 89 (90)
.+
T Consensus 193 rl 194 (377)
T KOG1308|consen 193 RL 194 (377)
T ss_pred HH
Confidence 43
No 234
>KOG1586|consensus
Probab=96.74 E-value=0.032 Score=34.74 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=49.1
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
..-|..|-...+++.|-..|.++.+..-+.++. ++ ...++...+.||++. +.++|.++.++++++..+
T Consensus 38 ~~Aan~yklaK~w~~AG~aflkaA~~h~k~~sk--hD-aat~YveA~~cykk~-~~~eAv~cL~~aieIyt~ 105 (288)
T KOG1586|consen 38 ERAANMYKLAKNWSAAGDAFLKAADLHLKAGSK--HD-AATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTD 105 (288)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc--hh-HHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHh
Confidence 344666677777777777777777777666543 22 255667778887776 999999999999988653
No 235
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=96.72 E-value=0.014 Score=36.03 Aligned_cols=59 Identities=15% Similarity=0.064 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK 86 (90)
Q Consensus 19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 86 (90)
|+++|.+|+.+.|.. +.. ++.+|.+....|+.=.|+=+|-+++......+.+..++...
T Consensus 1 A~~~Y~~A~~l~P~~-----G~p----~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-----GNP----YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTB-----SHH----HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-----CCc----ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 789999999999988 334 49999999999999999999999997654456666666544
No 236
>KOG2796|consensus
Probab=96.71 E-value=0.017 Score=36.61 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=48.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..+|.+..+-||-+.|..+|++.=+......+. +....++.+.+.+|...+++..|...|.+.+..+|.++.+..+.
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~---q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnK 292 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL---QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNK 292 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc---chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchH
Confidence 356777888888888888888655443333211 11122345666666666667677776766666666666655555
Q ss_pred HHH
Q psy8498 84 VVK 86 (90)
Q Consensus 84 ~~~ 86 (90)
|.|
T Consensus 293 ALc 295 (366)
T KOG2796|consen 293 ALC 295 (366)
T ss_pred HHH
Confidence 544
No 237
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.70 E-value=0.025 Score=34.20 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=49.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-CCCChHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-APMKASTFCCIV 84 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~ 84 (90)
++....++-|++...+-..+.+++.|...+ ...+|+...++|++.+|...|++++.- ...++..+..++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvqn----------r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA 131 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTVQN----------RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLA 131 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhHHH----------HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHH
Confidence 455667777887777777777777765521 277999999999999999999999852 223444444444
Q ss_pred H
Q psy8498 85 V 85 (90)
Q Consensus 85 ~ 85 (90)
.
T Consensus 132 ~ 132 (251)
T COG4700 132 Q 132 (251)
T ss_pred H
Confidence 3
No 238
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.69 E-value=0.017 Score=40.45 Aligned_cols=23 Identities=9% Similarity=-0.146 Sum_probs=11.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEA 26 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~a 26 (90)
+.+...|.+.|++++|+..|++.
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 34444455555555555555444
No 239
>KOG0376|consensus
Probab=96.64 E-value=0.0039 Score=41.75 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=11.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 50 GHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 50 g~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
+..+.+.+++..|+..+.++++++|.
T Consensus 45 a~a~lK~e~~~~Al~Da~kaie~dP~ 70 (476)
T KOG0376|consen 45 ALAHLKVESFGGALHDALKAIELDPT 70 (476)
T ss_pred hhhheeechhhhHHHHHHhhhhcCch
Confidence 33444444444444444444444443
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.60 E-value=0.039 Score=31.31 Aligned_cols=73 Identities=26% Similarity=0.275 Sum_probs=42.4
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Q psy8498 9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-KASTFCCIVVKE 87 (90)
Q Consensus 9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~ 87 (90)
++...|+++.|...|++++...+.. ..........+..+...+++++++..+.+++...+. ....+..++.++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPEL------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc------cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 6777788888888888875533210 001222344455566667777777777777766665 344455554443
No 241
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.57 E-value=0.053 Score=30.76 Aligned_cols=71 Identities=30% Similarity=0.268 Sum_probs=52.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
+..+...++++.++..+.++++..+.. ....+..++.++...+++++|...+.+++...|.........+.
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPDD--------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL 244 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCccc--------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHH
Confidence 334567788999999999999887762 03345888999999999999999999999888764444444433
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.52 E-value=0.027 Score=35.34 Aligned_cols=61 Identities=25% Similarity=0.294 Sum_probs=50.6
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhh
Q psy8498 11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVV 72 (90)
Q Consensus 11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 72 (90)
.++||++.|+.++.|+=...+.. .+........++++.|......+ ++++|..+.++|..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~-~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSL-DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcC-CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46899999999999998877522 23234555677899999999999 999999999999987
No 243
>KOG1585|consensus
Probab=96.52 E-value=0.014 Score=36.45 Aligned_cols=67 Identities=12% Similarity=0.227 Sum_probs=50.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+...++.|....+|++|..++.+|.+-.+.+...+.. ++.+...+.+..++..+.++.++|++|..+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA---AKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA---AKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4456788889999999999999999888877443221 334566777778888888888888887755
No 244
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.49 E-value=0.044 Score=40.48 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=10.6
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHH
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQA 69 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~a 69 (90)
+.+...|.+.|++++|.+.|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 44444444444444444444443
No 245
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.48 E-value=0.025 Score=37.94 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=60.3
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCC---C--cchhh----HHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGG---E--IIADK----WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~--~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (90)
|..+.++++|..|..-|+.|+++-.+... + ...+. ..-+-..+..||.++++.+.|+...-+++.++|..+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 55678899999999999999998776521 1 11111 112346789999999999999999999999999877
Q ss_pred HHHHHHHHHH
Q psy8498 78 STFCCIVVKE 87 (90)
Q Consensus 78 ~~~~~l~~~~ 87 (90)
..+..-|.|.
T Consensus 263 rnHLrqAavf 272 (569)
T PF15015_consen 263 RNHLRQAAVF 272 (569)
T ss_pred hHHHHHHHHH
Confidence 6665555443
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.48 E-value=0.087 Score=33.50 Aligned_cols=81 Identities=12% Similarity=-0.038 Sum_probs=60.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhC-------------------------CCcchhhHHHHHHhHHHHHHHh-----
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLG-------------------------GEIIADKWEPLLNNLGHVNRKL----- 56 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------~~~~~~~~~~~~~~lg~~~~~~----- 56 (90)
+......|+..+|+..++..++...... ........+.++..+|......
T Consensus 191 akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~ 270 (352)
T PF02259_consen 191 AKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLS 270 (352)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccc
Confidence 5667788899999999888887222211 1111233456677788888888
Q ss_pred -cCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498 57 -KKYEEALEFHKQALVVAPMKASTFCCIVVKE 87 (90)
Q Consensus 57 -g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 87 (90)
+..+++...|+++++++|....++...|..+
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 9999999999999999998888888877665
No 247
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.46 E-value=0.017 Score=25.18 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=24.0
Q ss_pred HhHHHHHHHhcCHHHHHHH--HHHHHhhCCCC
Q psy8498 47 NNLGHVNRKLKKYEEALEF--HKQALVVAPMK 76 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~--~~~al~~~~~~ 76 (90)
..+|..+..+|++++|++. |+-+..++|.|
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 7789999999999999999 55777777653
No 248
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.34 E-value=0.073 Score=31.39 Aligned_cols=66 Identities=11% Similarity=-0.006 Sum_probs=46.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
.+.++|.-|.+.||+++|.++|.++.+.-... .....++.++-.+....|++.....+..++-.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSP------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35678888889999999999998877642221 2223345667777777888888888888876553
No 249
>KOG3081|consensus
Probab=96.27 E-value=0.031 Score=35.29 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=17.2
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+-++.|+..+|+|++|....+.+|.-+++++.++.|
T Consensus 211 nG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 211 NGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 444444444444444444444444444444444444
No 250
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.046 Score=34.40 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=60.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.|+-.++...++++.|..+-++.+.+.|.. ...+ .--|.+|..+|-+..|++.++..++..|+.+.+-+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~d-----p~ei----rDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPED-----PYEI----RDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCC-----hhhc----cCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 4577788999999999999999999998877 3333 668999999999999999999999999987766543
No 251
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=96.24 E-value=0.025 Score=34.13 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=42.1
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh-CCCcchhhHHHHHHhHHHHHHHhcCHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL-GGEIIADKWEPLLNNLGHVNRKLKKYEEA 62 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 62 (90)
..+|..|. ..|.++++.++.+++++.+.. ..+ +.++..|+.++.++|++++|
T Consensus 145 ~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n------~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 145 YALATYYT-KRDPEKTIQLLLRALELSNPDDNFN------PEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCC------HHHHHHHHHHHHHhcchhhh
Confidence 34566665 889999999999999998776 222 55579999999999999887
No 252
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=96.22 E-value=0.0071 Score=24.25 Aligned_cols=23 Identities=9% Similarity=-0.233 Sum_probs=20.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFME 25 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~ 25 (90)
..++|.++...|++++|+..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 46889999999999999998763
No 253
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.16 E-value=0.044 Score=34.47 Aligned_cols=61 Identities=20% Similarity=0.142 Sum_probs=42.0
Q ss_pred HHHH-HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 6 VELS-SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 6 l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
.|.+ +...++.+.|...|+.+++.++.. ...| ......+.+.|+.+.|...|++++..-|.
T Consensus 41 ~A~~E~~~~~d~~~A~~Ife~glk~f~~~-----~~~~----~~Y~~~l~~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 41 YALMEYYCNKDPKRARKIFERGLKKFPSD-----PDFW----LEYLDFLIKLNDINNARALFERAISSLPK 102 (280)
T ss_dssp HHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHH----HHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCC-----HHHH----HHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence 3444 333566666999999999888776 3444 55667777888899999999998876553
No 254
>KOG1585|consensus
Probab=96.08 E-value=0.13 Score=32.34 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=49.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
+...+....+...+.++..+|++|...+-+.+.+.. . +.++.. +-=..+.-++++|+..|++++.+-.
T Consensus 74 yEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt--A-AmaleK-Aak~lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT--A-AMALEK-AAKALENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch--H-HHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 345677888889999999999999999998866522 1 222222 3334456789999999999987644
No 255
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.03 E-value=0.075 Score=32.34 Aligned_cols=61 Identities=20% Similarity=0.103 Sum_probs=45.7
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+.....+++|++.|.-|+-.....+.+ ....+.++..+|++|+.+|+.++...++++|+..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~--~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~ 147 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEK--PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF 147 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 345678899999999999887766544 2344667799999999999977666666666643
No 256
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.00 E-value=0.036 Score=24.51 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=28.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+..+|-+-...++|++|++-|++++++....
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999998765
No 257
>KOG3081|consensus
Probab=95.97 E-value=0.056 Score=34.17 Aligned_cols=68 Identities=15% Similarity=0.050 Sum_probs=34.6
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
++.++.+.+-|+...++..++.++- ++..||..+.+ .+++..|.-.|++--+..|..+......+
T Consensus 146 I~lk~~r~d~A~~~lk~mq~ided~-----------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~A 214 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQIDEDA-----------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQA 214 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHH-----------HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHH
Confidence 4555666666666666666654432 22333333333 23456666666665543344455555555
Q ss_pred HHH
Q psy8498 85 VKE 87 (90)
Q Consensus 85 ~~~ 87 (90)
+|+
T Consensus 215 v~~ 217 (299)
T KOG3081|consen 215 VCH 217 (299)
T ss_pred HHH
Confidence 444
No 258
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.067 Score=32.28 Aligned_cols=29 Identities=17% Similarity=0.016 Sum_probs=24.1
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
.-.|.++...|+.++|+.-|+++++..++
T Consensus 163 elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 163 ELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 44588999999999999999999988643
No 259
>KOG2796|consensus
Probab=95.92 E-value=0.028 Score=35.65 Aligned_cols=63 Identities=19% Similarity=0.075 Sum_probs=55.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
.|.+.+|...++|.+|...|.+.++..+.+ +..-++-|.|..-.|+...|++..+++++..|.
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~---------~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRN---------AVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCc---------hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 467888999999999999999998887766 344599999999999999999999999999984
No 260
>PLN03077 Protein ECB2; Provisional
Probab=95.83 E-value=0.074 Score=38.18 Aligned_cols=26 Identities=8% Similarity=-0.102 Sum_probs=15.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALS 28 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~ 28 (90)
++.+...|...|+.++|++.|++..+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455556666666666666666554
No 261
>PRK10941 hypothetical protein; Provisional
Probab=95.82 E-value=0.078 Score=33.42 Aligned_cols=51 Identities=20% Similarity=0.078 Sum_probs=44.4
Q ss_pred hhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Q psy8498 40 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGVL 90 (90)
Q Consensus 40 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 90 (90)
+.....+.++-.+|.+.++++.|+++.++.+.+.|+++.-+.-.|.++..|
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL 228 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL 228 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344556799999999999999999999999999999998888888888654
No 262
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=95.50 E-value=0.026 Score=37.45 Aligned_cols=69 Identities=14% Similarity=0.016 Sum_probs=48.2
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
++..+..++.-.|||..|++..+.. ++.+..--........++++.+|.+|.-+++|.+|++.|.+.+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999888776542 21111100011233355678899999999999999999999884
No 263
>KOG4507|consensus
Probab=95.50 E-value=0.022 Score=39.69 Aligned_cols=80 Identities=21% Similarity=0.103 Sum_probs=65.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
++..|..+..+|+...|+.|++.|+...|.-.. ..+.+++.+..+-|-.-.|-....|++.+.-+.+-.+..
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~--------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~ 681 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD--------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS 681 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhc--------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence 444577778899999999999999998886521 123789999999999999999999999998877888877
Q ss_pred HHHHHhcC
Q psy8498 83 IVVKEGVL 90 (90)
Q Consensus 83 l~~~~~~~ 90 (90)
+|..+.+|
T Consensus 682 ~g~~~l~l 689 (886)
T KOG4507|consen 682 LGNAYLAL 689 (886)
T ss_pred cchhHHHH
Confidence 77776543
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.50 E-value=0.097 Score=35.73 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=47.4
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 69 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 69 (90)
++|++..+.|+.++|++.|+..++..|..+. -.++.++-.++..+++|.++.....+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 6899999999999999999999998774311 335688999999999998888777664
No 265
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.44 E-value=0.22 Score=28.01 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=47.1
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcc---hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEII---ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
....|-|++|...+++|.++....+.... ...-+.++-.|+..+.++|+|++++.-..++|..
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 45678899999999999999887754421 1112457888999999999999999999999854
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.43 E-value=0.35 Score=30.39 Aligned_cols=78 Identities=14% Similarity=-0.002 Sum_probs=53.1
Q ss_pred hhhHHHHHHhhC-CHHHHHHHHHHHHHHHHhh----CC-CcchhhHHHHHHhHHHHHHHhcCHHHHHH---HHHHHHhhC
Q psy8498 3 LDNVELSSDKSF-SYTVAENCFMEALSKVKQL----GG-EIIADKWEPLLNNLGHVNRKLKKYEEALE---FHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~----~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~---~~~~al~~~ 73 (90)
+.|+|......+ +++.|..++++++++.+.. .. ....+...+++..++.++...+.++...+ ..+.+-...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 468899999999 9999999999999997551 11 12234556788999999999888653333 333333334
Q ss_pred CCChHHH
Q psy8498 74 PMKASTF 80 (90)
Q Consensus 74 ~~~~~~~ 80 (90)
|+.+..+
T Consensus 118 ~~~~~~~ 124 (278)
T PF08631_consen 118 GNKPEVF 124 (278)
T ss_pred CCCcHHH
Confidence 5545444
No 267
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.43 E-value=0.25 Score=28.61 Aligned_cols=74 Identities=15% Similarity=-0.033 Sum_probs=48.9
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
.+..+-...+++++++..+....-+.|+.. ..-.--|.++...|+|++|++.+++...-.+..+-..--++
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~---------e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLK---------ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcc---------ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 334444557888888888777777777662 22244678888889999999988887665555454444445
Q ss_pred HHH
Q psy8498 85 VKE 87 (90)
Q Consensus 85 ~~~ 87 (90)
+|.
T Consensus 86 ~CL 88 (153)
T TIGR02561 86 LCL 88 (153)
T ss_pred HHH
Confidence 544
No 268
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=95.40 E-value=0.043 Score=25.06 Aligned_cols=25 Identities=8% Similarity=-0.080 Sum_probs=23.1
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALS 28 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~ 28 (90)
.+++.+|..+|+++.|.+.+++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4789999999999999999999995
No 269
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.39 E-value=0.23 Score=30.69 Aligned_cols=55 Identities=25% Similarity=0.107 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhh
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVV 72 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~ 72 (90)
+.|...|++|+++....-++ ..+.......|.+.++++ +|+.++|.+..++|+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~-~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPP-THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCT-TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCC-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67999999999999985332 234444455677777766 99999999999998853
No 270
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.30 E-value=0.32 Score=32.19 Aligned_cols=81 Identities=11% Similarity=-0.062 Sum_probs=56.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH---hcCHHHHHHHHHHHHh-hCCCChH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK---LKKYEEALEFHKQALV-VAPMKAS 78 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~-~~~~~~~ 78 (90)
..++=.+|....+|+.-+++.+..-.+ |..+.. ....+...+|.++-+ .|+.++|++...+++. ..+.++.
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~----~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVA----NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccchh----cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 356667788888888777776655443 221110 013344778899988 9999999999999654 4457788
Q ss_pred HHHHHHHHHh
Q psy8498 79 TFCCIVVKEG 88 (90)
Q Consensus 79 ~~~~l~~~~~ 88 (90)
+++-.|.+|-
T Consensus 219 ~~gL~GRIyK 228 (374)
T PF13281_consen 219 TLGLLGRIYK 228 (374)
T ss_pred HHHHHHHHHH
Confidence 8988888763
No 271
>KOG0551|consensus
Probab=95.23 E-value=0.067 Score=34.85 Aligned_cols=63 Identities=16% Similarity=0.065 Sum_probs=55.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
+.|-+.+....|+|..|+.-..+++.+.|.. .+++.+=+.|+..+.++.+|..+.+..++++.
T Consensus 122 Y~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h---------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 122 YTNRAAAQLYLGNYRSALNDCSAALKLKPTH---------LKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcCcch---------hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 4677788888999999999999999998877 66678899999999999999999999988764
No 272
>PF12854 PPR_1: PPR repeat
Probab=95.22 E-value=0.075 Score=22.60 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 68 (90)
..+++.+=..+++.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34678999999999999999999875
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.99 E-value=0.17 Score=32.18 Aligned_cols=60 Identities=10% Similarity=-0.104 Sum_probs=51.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+..++..+...|+++.+++.+++.+...|-. ...+..+=..|.+.|+...|++.|++.-.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~---------E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYD---------EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccc---------hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4456777888899999999999999998877 44558888999999999999999999765
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.92 E-value=0.41 Score=28.27 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 20 ENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 20 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
.+-++.-++-...+..+ +.....+..+|..|.+.|++++|++.|.++.....
T Consensus 16 ~~~Le~elk~~~~n~~k---esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~ 67 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLGK---ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT 67 (177)
T ss_pred HHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC
Confidence 33445555554444333 33345679999999999999999999999887653
No 275
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.83 E-value=0.68 Score=30.42 Aligned_cols=77 Identities=14% Similarity=0.029 Sum_probs=57.8
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh------------CC-C-------cchhhHHHHHHhHHHHHHHhcCHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL------------GG-E-------IIADKWEPLLNNLGHVNRKLKKYEE 61 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~-~-------~~~~~~~~~~~~lg~~~~~~g~~~~ 61 (90)
++..++.++..+|+++.|.++.++|+=..+.. .. . ......-.+++.....+.+.|-+..
T Consensus 42 tLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rT 121 (360)
T PF04910_consen 42 TLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRT 121 (360)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHH
Confidence 46678999999999999999999998666532 00 0 0011112345777888999999999
Q ss_pred HHHHHHHHHhhCCC-ChH
Q psy8498 62 ALEFHKQALVVAPM-KAS 78 (90)
Q Consensus 62 A~~~~~~al~~~~~-~~~ 78 (90)
|+++.+-.+.++|. +|.
T Consensus 122 AlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 122 ALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHHHHHHHHhcCCCCCcc
Confidence 99999999999997 553
No 276
>KOG3783|consensus
Probab=94.73 E-value=0.47 Score=32.72 Aligned_cols=67 Identities=18% Similarity=0.041 Sum_probs=54.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhhCC
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAP 74 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~ 74 (90)
+|.++...|+...|..+|+..++-.-....+ .-..+-+++.+|.++..+|. ..++..+..+|.....
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d--~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEKESKRTED--LWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 5899999999999999999999764433332 12235578999999999999 9999999999987763
No 277
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.63 E-value=0.4 Score=29.67 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 18 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 18 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
..+.++.+|++.+...+.. .....+...+|.-|.+.|++++|+++++.+...
T Consensus 156 ~iI~lL~~A~~~f~~~~~~---R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQN---RMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4678889999988877553 222345688999999999999999999998654
No 278
>KOG1550|consensus
Probab=94.63 E-value=0.37 Score=33.31 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=51.6
Q ss_pred hhhHHHHHHhhC-----CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc---CHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSF-----SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~ 74 (90)
...+|.+|.... +++.|..+|.++.+... +...+.+|.++.... +...|..+|..|...
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-----------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-- 357 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-----------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-- 357 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-----------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--
Confidence 456788888743 67778888888877532 223477888877755 567889999888765
Q ss_pred CChHHHHHHHHHHh
Q psy8498 75 MKASTFCCIVVKEG 88 (90)
Q Consensus 75 ~~~~~~~~l~~~~~ 88 (90)
.+..+...++.|+.
T Consensus 358 G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 358 GHILAIYRLALCYE 371 (552)
T ss_pred CChHHHHHHHHHHH
Confidence 35677777777764
No 279
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.62 E-value=0.22 Score=33.77 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=49.6
Q ss_pred hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHh
Q psy8498 13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM----KASTFCCIVVKEG 88 (90)
Q Consensus 13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~ 88 (90)
..+.+.|++.++...+.+|+. .--+...|..++..|+.++|++.|++++....+ ..-.++.+|.++.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s---------~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNS---------ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 456778889999999888876 333588899999999999999999998853321 1223556666654
No 280
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.59 E-value=0.11 Score=23.71 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.7
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
.++|..|.++|+.+.|.+..++.+.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57999999999999999999999853
No 281
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=94.57 E-value=0.11 Score=26.51 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.8
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
...++-+...|+|++|+.+|+++++..-.
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999998866
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.56 E-value=0.34 Score=29.34 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=46.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 69 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 69 (90)
.++..+.+.+++++|+..++.++..-.+. ...+.+-.+++.+...+|++++|+......
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De------~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDE------NLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhH------HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 45777889999999999999998654332 222335588999999999999999977663
No 283
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.46 E-value=0.23 Score=36.02 Aligned_cols=64 Identities=19% Similarity=0.027 Sum_probs=53.9
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
|.+....|++++|+++.+.+++..|..-.... ..++..+|.+..-.|++++|..+.+++.++..
T Consensus 465 a~val~~~~~e~a~~lar~al~~L~~~~~~~r----~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 465 AQVALNRGDPEEAEDLARLALVQLPEAAYRSR----IVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccccchhh----hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 66777889999999999999999988744322 44678899999999999999999999998743
No 284
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=94.42 E-value=0.15 Score=25.26 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=25.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+.+.|+-+-..|++++|+.+|.++++..-..
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3466788889999999999999999887654
No 285
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.33 E-value=0.38 Score=25.27 Aligned_cols=48 Identities=17% Similarity=-0.004 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
.+.-++++++..|++ ....+.+|..+...|++++|++.+-..++.++.
T Consensus 7 ~~~al~~~~a~~P~D---------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 7 DIAALEAALAANPDD---------LDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHHSTT----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred cHHHHHHHHHcCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 355667777766665 344588999999999999999999999988763
No 286
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.29 E-value=0.13 Score=22.32 Aligned_cols=28 Identities=14% Similarity=-0.037 Sum_probs=21.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHH--HHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFM--EALSKV 30 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~--~al~~~ 30 (90)
+..+|..+..+|++++|+..|+ -+..+.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3467889999999999999955 665554
No 287
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=94.20 E-value=0.18 Score=25.68 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=25.1
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
...++-+-..|++++|+.+|+++++..-+.
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999887765
No 288
>KOG2709|consensus
Probab=94.18 E-value=0.27 Score=33.11 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=44.8
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh-------CCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL-------GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
+..+.|++|.+.+++++|+.+|++++.+..+. +.+.....| ......-.++..-....++--+.|
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W----~dAcaliQklkes~~~vr~Rl~vL 95 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMW----KDACALIQKLKESKSSVRHRLNVL 95 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998873 223345566 444444455555555555444444
No 289
>KOG2581|consensus
Probab=94.11 E-value=0.3 Score=32.81 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=46.3
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
-..|...+.|+.|...-.++. .|+.. ....|+..++.+|.+..-+++|..|.+++-+|+...|++
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~--~pe~~---snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSV--YPEAA---SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHhhhHHHHHHHHHhhccc--Ccccc---ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 344555666666655544432 12111 134678888999999999999999999999999999963
No 290
>KOG2610|consensus
Probab=94.09 E-value=0.32 Score=32.12 Aligned_cols=82 Identities=7% Similarity=-0.187 Sum_probs=56.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCC-------------------------c--c--hhhHHHHHHhHHHHHHHhc
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGE-------------------------I--I--ADKWEPLLNNLGHVNRKLK 57 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------~--~--~~~~~~~~~~lg~~~~~~g 57 (90)
+.+....|++.+|-...++.++-.|..--. + . .+-..-+..-++..+.+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 445566778888777778877777764100 0 0 0001123355688999999
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 58 KYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
-|++|.+..++++++++.+.=+....++++-
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle 220 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLE 220 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence 9999999999999999977666666666653
No 291
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.04 E-value=0.45 Score=29.82 Aligned_cols=63 Identities=21% Similarity=0.094 Sum_probs=50.7
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
.+|..|.+.|.|..|+.-+++.++..++.... ...+..+..+|..+|-.++|.+. .+.|..++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~------~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~ 234 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAV------REALARLEEAYYALGLTDEAKKT-AKVLGANY 234 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccch------HHHHHHHHHHHHHhCChHHHHHH-HHHHHhcC
Confidence 46889999999999999999999998776322 45568899999999999998775 44555553
No 292
>KOG1550|consensus
Probab=94.02 E-value=0.68 Score=32.07 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=53.4
Q ss_pred hhHHHHHHh-----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-----CHHHHHHHHHHHHhhC
Q psy8498 4 DNVELSSDK-----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----KYEEALEFHKQALVVA 73 (90)
Q Consensus 4 ~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~ 73 (90)
..+|.+|.. ..|.++|+.+|+.+.+...... ...+....+.+|.+|.+.. +.+.|+.+|.++....
T Consensus 248 ~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a----~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 248 YALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA----TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH----hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 455655553 3799999999999988322110 0111233478999998854 6788999999998775
Q ss_pred CCChHHHHHHHHHH
Q psy8498 74 PMKASTFCCIVVKE 87 (90)
Q Consensus 74 ~~~~~~~~~l~~~~ 87 (90)
++.+.+.+|.++
T Consensus 324 --~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 324 --NPDAQYLLGVLY 335 (552)
T ss_pred --CchHHHHHHHHH
Confidence 566777777765
No 293
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=93.90 E-value=0.29 Score=25.19 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=17.2
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
.+.|..+-+.|+.++|+.+|++++..
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 34444455557778888888887754
No 294
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=93.81 E-value=0.13 Score=26.51 Aligned_cols=31 Identities=13% Similarity=0.004 Sum_probs=27.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
..+.|+.+-+.|+.+.|+.+|+++++...+.
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999988876
No 295
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=93.77 E-value=0.89 Score=28.38 Aligned_cols=56 Identities=14% Similarity=-0.066 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhh
Q psy8498 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVV 72 (90)
Q Consensus 16 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~ 72 (90)
-+.|...|++|+++....-++ .++.......|.+.+|++ +++.++|.+..++|...
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~p-t~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPP-THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357899999999997763222 233333445677777777 69999999888887743
No 296
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=93.65 E-value=0.22 Score=25.47 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=23.9
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.-|+-+-..|+|++|+.+|.++++.+-..
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 44677888999999999999999887664
No 297
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=93.57 E-value=0.36 Score=24.59 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=12.1
Q ss_pred hcCHHHHHHHHHHHHhh
Q psy8498 56 LKKYEEALEFHKQALVV 72 (90)
Q Consensus 56 ~g~~~~A~~~~~~al~~ 72 (90)
.|++++|+++|.+|++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46777777777777754
No 298
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.29 E-value=0.25 Score=19.83 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=22.7
Q ss_pred cCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 57 KKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 57 g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
|+.+.+...|++++...|..+..+....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 5678999999999999997777765543
No 299
>KOG1070|consensus
Probab=93.21 E-value=1.1 Score=34.51 Aligned_cols=63 Identities=21% Similarity=0.062 Sum_probs=50.9
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
..|.-+|.....+++|.++|+..++.+.+. .+++..+|..+.++.+-+.|.+..++||+.-|+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFGQT---------RKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcch---------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 346677888888899999998888877644 334488899999999999999999999988875
No 300
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.02 E-value=0.47 Score=29.89 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=45.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.......+.+..+.|...|++|++- .... ..++...|..-+. .++.+.|...|+++++..|.+...+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~-----~~~~----~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKD-----KRCT----YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-----CCS-----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcC-----CCCC----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3444555566688888889888631 1111 2345778888666 56666699999999999887766543
No 301
>KOG3824|consensus
Probab=93.02 E-value=0.59 Score=30.59 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=35.9
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE 87 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 87 (90)
.+.+.-.++.|+.++|...|+.|++++|.++.++...|...
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~ 160 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFR 160 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHH
Confidence 45666778899999999999999999999999998888654
No 302
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=92.95 E-value=0.32 Score=28.81 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=30.1
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
+.++.+++.++...|+.++|.+..+++..+.|.
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 556789999999999999999999999999984
No 303
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=92.94 E-value=0.28 Score=19.57 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=22.8
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALS 28 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 28 (90)
+++.+-..|.+.|++++|.+.|++-.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 456777889999999999999988654
No 304
>KOG2376|consensus
Probab=92.86 E-value=2.4 Score=29.91 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=59.0
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
.+...++-+.|...+.+|++-....... ......++..++.+-.+.|.-++|.+.+++.++.+|.+..++..+-.+|+
T Consensus 426 l~~~~~~~~~a~~vl~~Ai~~~~~~~t~--s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 426 LYYKIKDNDSASAVLDSAIKWWRKQQTG--SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA 503 (652)
T ss_pred HHHhccCCccHHHHHHHHHHHHHHhccc--chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3555666667888888888776665333 12223345677888888899999999999999999999998887776665
Q ss_pred c
Q psy8498 89 V 89 (90)
Q Consensus 89 ~ 89 (90)
.
T Consensus 504 ~ 504 (652)
T KOG2376|consen 504 R 504 (652)
T ss_pred h
Confidence 4
No 305
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=92.76 E-value=0.57 Score=23.08 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=17.7
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
...|.-.-+.|++++|+++|.+++..
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33444455568888888888887754
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.37 E-value=1.6 Score=29.95 Aligned_cols=51 Identities=16% Similarity=0.006 Sum_probs=42.6
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498 8 LSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 8 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 68 (90)
.-+...|+|.++..+-.=..+++|. +.++.-+|.|.....+|++|-+++..
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaPS----------~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAPS----------PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCc----------HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3456789999999888888888772 44568899999999999999999876
No 307
>KOG2300|consensus
Probab=91.92 E-value=0.94 Score=31.31 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=27.5
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
..+++..|...++++++.||.+...+.+++.
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4456778999999999999999999999886
No 308
>KOG1308|consensus
Probab=91.70 E-value=0.091 Score=34.30 Aligned_cols=61 Identities=16% Similarity=-0.096 Sum_probs=50.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
+-+.++.+.+....|++-+..|+++-++.. .. +-.-|...+-+|.|++|..++.++.+++-
T Consensus 153 kr~sv~lkl~kp~~airD~d~A~ein~Dsa-----~~----ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 153 KRASVFLKLKKPNAAIRDCDFAIEINPDSA-----KG----YKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred cccceeeeccCCchhhhhhhhhhccCcccc-----cc----cchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 446778888999999999999999988772 22 24467788889999999999999998864
No 309
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=91.69 E-value=1.1 Score=31.34 Aligned_cols=51 Identities=24% Similarity=0.202 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..++.+|.+|+......=.. .. .-.|..+|..+++.+++.+|+....+|-.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n--~H--vYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNN--HH--VYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT------SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcC--Cc--cccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 44788899999888776322 11 22457789999999999999999988764
No 310
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=91.68 E-value=0.48 Score=19.19 Aligned_cols=27 Identities=19% Similarity=0.007 Sum_probs=22.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALS 28 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 28 (90)
+++.+-..|.+.|++++|.+.|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456677789999999999999998754
No 311
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.57 E-value=0.83 Score=23.31 Aligned_cols=26 Identities=23% Similarity=0.082 Sum_probs=16.4
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
-..|.-+-+.|++++|+.+|+++++.
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33444555567777777777777643
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.54 E-value=0.6 Score=27.29 Aligned_cols=58 Identities=9% Similarity=-0.115 Sum_probs=39.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
|.++...|++.+|+..|+..-+-.+.. +.+.--++.|++-+|+. .=..+.+++++..+
T Consensus 51 ~~l~i~r~~w~dA~rlLr~l~~~~~~~---------p~~kALlA~CL~~~~D~-~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 51 GWLHIVRGDWDDALRLLRELEERAPGF---------PYAKALLALCLYALGDP-SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCC---------hHHHHHHHHHHHHcCCh-HHHHHHHHHHhcCC
Confidence 778999999999999999965443322 22334478888888884 34455666666554
No 313
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=91.28 E-value=0.67 Score=23.27 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=23.9
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.-|+-+-..|++++|+.+|.++++..-..
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999887764
No 314
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=1 Score=28.95 Aligned_cols=53 Identities=11% Similarity=-0.037 Sum_probs=42.9
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 68 (90)
+.-....|++.+|...|..++...+++ .. +..-++.++...|+.+.|...+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~-----~~----~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPEN-----SE----AKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCccc-----ch----HHHHHHHHHHHcCChHHHHHHHHh
Confidence 445678899999999999999998887 22 337789999999999888776665
No 315
>KOG1464|consensus
Probab=91.13 E-value=1.2 Score=28.83 Aligned_cols=54 Identities=24% Similarity=0.186 Sum_probs=41.3
Q ss_pred hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..++++|+..|++.+++.+.. + +.--+++-.+-.+++++|++++-...|++.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEK-g----eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEK-G----EWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhccccc-c----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 357899999999999987654 1 21123446677788999999999999999774
No 316
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=90.98 E-value=1.1 Score=27.79 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=25.2
Q ss_pred HHHHHhHHHHHH---------HhcCHHHHHHHHHHHHhhCCCC
Q psy8498 43 EPLLNNLGHVNR---------KLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 43 ~~~~~~lg~~~~---------~~g~~~~A~~~~~~al~~~~~~ 76 (90)
++.+-..|..+. ..++...|+.++++|++++|+-
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 444455577663 4567889999999999999853
No 317
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.81 E-value=1.1 Score=33.08 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=27.8
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (90)
.--|.+|.++|++++-+++|.-|++-.|++|..
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 445889999999999999999999988776543
No 318
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=90.80 E-value=0.81 Score=22.92 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.-|+-....|++++|+.+|..+++..-..
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45666778899999999999999887664
No 319
>KOG2471|consensus
Probab=90.61 E-value=0.79 Score=31.75 Aligned_cols=45 Identities=22% Similarity=0.145 Sum_probs=37.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK 55 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 55 (90)
.+.|.|..|...|++-.|-+||+++...+..+ ...| .+++.|..-
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-----PrlW----LRlAEcCim 381 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-----PRLW----LRLAECCIM 381 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-----cHHH----HHHHHHHHH
Confidence 35689999999999999999999999999887 3444 888877643
No 320
>KOG2114|consensus
Probab=90.46 E-value=1.4 Score=32.18 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 21 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 21 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
..|.-|+.+++....+ ....+.++...|.-+++.|++++|...|-+++..
T Consensus 348 ~ly~~Ai~LAk~~~~d--~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLD--EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3567788887776544 4455778899999999999999999999999853
No 321
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.39 E-value=0.91 Score=30.87 Aligned_cols=59 Identities=15% Similarity=-0.032 Sum_probs=49.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..+..+|..+++.+-|+.+-.+.+.+.|.. ...+...|.|++.+.+|.+|.+-+--+.-
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~---------frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSY---------FRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcch---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999999987765 44557789999999999999887766653
No 322
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=90.38 E-value=0.93 Score=22.84 Aligned_cols=29 Identities=17% Similarity=0.191 Sum_probs=23.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.-|+-....|+|++|+.+|.++++..-..
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 44666788999999999999999887654
No 323
>KOG3807|consensus
Probab=90.37 E-value=2.7 Score=28.03 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhCC------------C--cc--hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 16 YTVAENCFMEALSKVKQLGG------------E--II--ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 16 ~~~A~~~~~~al~~~~~~~~------------~--~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
..+|++.|++|++..+..-. + .. .....-+..+++.|-+++|+..+|.+.++...+.-|
T Consensus 232 i~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 232 IVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 34688889998886654300 0 00 111223457899999999999999999999877655
No 324
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=90.30 E-value=0.93 Score=22.98 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=23.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.-|+-....|+|++|..+|..+++..-..
T Consensus 11 ~~Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 11 VQAVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 44566788899999999999999887664
No 325
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.22 E-value=2.7 Score=25.37 Aligned_cols=80 Identities=10% Similarity=-0.085 Sum_probs=51.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC------------------------------CcchhhHHHHHHhHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGG------------------------------EIIADKWEPLLNNLGHVN 53 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------------~~~~~~~~~~~~~lg~~~ 53 (90)
.+.+.+..+.|+-..|+..|.++-+--+-... ........+.-..||..-
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa 177 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA 177 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence 46688889999999999998876532211100 011122233446789999
Q ss_pred HHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 54 RKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 54 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
++.|++..|.+.|++... +...|....+.+
T Consensus 178 ~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 178 YKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred HhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 999999999999999765 333343333333
No 326
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=89.92 E-value=1.4 Score=22.47 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=11.8
Q ss_pred HHHhcCHHHHHHHHHHHHh
Q psy8498 53 NRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 53 ~~~~g~~~~A~~~~~~al~ 71 (90)
.=+.|++++|+.+|.++++
T Consensus 16 ~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 16 LDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3345666777777776664
No 327
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.82 E-value=1.8 Score=22.67 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=25.5
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGG 35 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 35 (90)
..++..+...|++++|++.+.+.++..+..+.
T Consensus 26 ~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~ 57 (90)
T PF14561_consen 26 YALADALLAAGDYEEALDQLLELVRRDRDYED 57 (90)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence 46789999999999999999999988766633
No 328
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.74 E-value=3.7 Score=26.13 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=40.0
Q ss_pred HHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 42 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
......++=..+...++++.|..+.++.+.++|.++....-.|.+|..
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q 227 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ 227 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh
Confidence 345567788889999999999999999999999988777777777764
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.53 E-value=1.7 Score=27.60 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=51.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+...+.+..+.|.++-|...+.++.+..+..... .+.+....+.++...|+..+|+...+..+.
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567889999999999999999988865443221 133457789999999999999999998887
No 330
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=89.29 E-value=1.1 Score=22.78 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=23.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
..|.-....|+|++|..+|+.+++..-..
T Consensus 11 ~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 11 RLALEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44566778899999999999999887764
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.09 E-value=2.4 Score=27.56 Aligned_cols=56 Identities=13% Similarity=-0.106 Sum_probs=44.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
.+..|...|.+.+|+++-++++.+.|-. .+.+ .-+=.++-..|+--.+...|++--
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~-----e~~n----k~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLS-----EQDN----KGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhh-----hHHH----HHHHHHHHHhccchhhhhHHHHHH
Confidence 4677899999999999999999998877 2333 556667788899888888877743
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.01 E-value=2 Score=27.90 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=31.3
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK 86 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 86 (90)
++-.+..|.+.|.+.+|+++.++++.++|-+...+..+-.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~ 322 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMAS 322 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 34458889999999999999999999999555544443333
No 333
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.99 E-value=4 Score=25.56 Aligned_cols=62 Identities=15% Similarity=-0.046 Sum_probs=48.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
...-+.+.++..+++...+.-++-.|.+ .... +.+-.+++-.|+|++|..-.+-+-++.|+.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtd-----a~~R----hflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTD-----AGGR----HFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcc-----ccch----hHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3445667788888988888888776665 2222 667788999999999999999999998854
No 334
>KOG3617|consensus
Probab=88.96 E-value=1.1 Score=33.05 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=24.7
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
..+|++.+.-+...++.+.|+++|+++-
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 5678999999999999999999999863
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.94 E-value=1.8 Score=29.31 Aligned_cols=60 Identities=22% Similarity=0.112 Sum_probs=39.1
Q ss_pred hHHHHHHhhCCHHHHHHH-------HH---------HHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENC-------FM---------EALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~-------~~---------~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 68 (90)
.++..+.++|-++.|+.. |+ .|+++....+. .. .+..||.....+|+++-|.++|++
T Consensus 300 ~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~---~~----~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 300 SIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDD---PE----KWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCST---HH----HHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCc---HH----HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 445556677777777665 33 33333332221 23 349999999999999999999999
Q ss_pred HHh
Q psy8498 69 ALV 71 (90)
Q Consensus 69 al~ 71 (90)
+-.
T Consensus 373 ~~d 375 (443)
T PF04053_consen 373 AKD 375 (443)
T ss_dssp CT-
T ss_pred hcC
Confidence 653
No 336
>KOG0546|consensus
Probab=88.90 E-value=0.33 Score=31.84 Aligned_cols=72 Identities=25% Similarity=0.103 Sum_probs=50.9
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.|++.+-...+.+..|...-..+++..+.. .+.++..+..+....++++|++.++.+....|++......+
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~---------tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRDERSK---------TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred cchHHhcccccCCCcceeccccccccChhh---------CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 345666666666666666655555511111 34568899999999999999999999999999877655444
Q ss_pred H
Q psy8498 84 V 84 (90)
Q Consensus 84 ~ 84 (90)
.
T Consensus 350 ~ 350 (372)
T KOG0546|consen 350 E 350 (372)
T ss_pred H
Confidence 3
No 337
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=88.88 E-value=1.8 Score=21.66 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=14.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 50 GHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 50 g~~~~~~g~~~~A~~~~~~al~~ 72 (90)
|.-.-+.|++++|+.+|.++++.
T Consensus 15 Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 15 ALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344457777777777777643
No 338
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.66 E-value=2 Score=21.94 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=13.1
Q ss_pred HHHhcCHHHHHHHHHHHHhh
Q psy8498 53 NRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 53 ~~~~g~~~~A~~~~~~al~~ 72 (90)
.=+.|+|++|+.+|+.+++.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 33457777777777777643
No 339
>KOG2053|consensus
Probab=88.56 E-value=6 Score=29.31 Aligned_cols=70 Identities=19% Similarity=0.053 Sum_probs=45.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.-+-.+|.+++++++|..+|+++....|.. ..+..+-.+|.+-+.|.+--...-+.-+..|+++-.++.
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~e----------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQKYPSE----------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 3446789999999999999999999988763 122445555666666554444333333456666554443
No 340
>KOG2041|consensus
Probab=88.51 E-value=4.5 Score=29.62 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=39.3
Q ss_pred hCCHHHHHHHHHH------HHHHHHhh-------------CCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 13 SFSYTVAENCFME------ALSKVKQL-------------GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 13 ~g~~~~A~~~~~~------al~~~~~~-------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
-|++++|++.|.. |+++..+. +.+..++.......++|..+..+..|++|.++|.++-
T Consensus 747 ~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4778887777643 33333322 2222234445566999999999999999999999864
No 341
>KOG2300|consensus
Probab=88.49 E-value=6.6 Score=27.42 Aligned_cols=61 Identities=23% Similarity=0.208 Sum_probs=44.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
+|.-..-.+.|+.|+.+|..|.+.-... +.++.+-.|+|.+|.+.|+-+ ++|+-.-.+.|.
T Consensus 373 lGlys~sv~~~enAe~hf~~a~k~t~~~------dl~a~~nlnlAi~YL~~~~~e---d~y~~ld~i~p~ 433 (629)
T KOG2300|consen 373 LGLYSHSVNCYENAEFHFIEATKLTESI------DLQAFCNLNLAISYLRIGDAE---DLYKALDLIGPL 433 (629)
T ss_pred HhhHhhhcchHHHHHHHHHHHHHhhhHH------HHHHHHHHhHHHHHHHhccHH---HHHHHHHhcCCC
Confidence 4677777899999999999999876554 556777789999999988743 333333344554
No 342
>PF13041 PPR_2: PPR repeat family
Probab=87.66 E-value=1.7 Score=19.66 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=29.1
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCC-CChHHHHHH
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP-MKASTFCCI 83 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l 83 (90)
+++.+=..+.+.|++++|.+.|++..+..- -+..++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 468888999999999999999999886532 234444433
No 343
>KOG2047|consensus
Probab=87.63 E-value=3.3 Score=29.77 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=44.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
...|..|-..|+.+.|...|++|.+.--.. -+..+.++.+.|..-.+..+++.|++..++|...
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~-----v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKT-----VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccc-----hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 456777888888888888888887652221 1223455577777777788888888888887754
No 344
>KOG1915|consensus
Probab=87.21 E-value=4.4 Score=28.28 Aligned_cols=53 Identities=9% Similarity=0.157 Sum_probs=39.3
Q ss_pred hhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 12 KSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 12 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+.++++....+|++-++-.|.+ -..| ...|.+-..+|+.+.|...|+-|+...
T Consensus 449 qL~efDRcRkLYEkfle~~Pe~-----c~~W----~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFSPEN-----CYAW----SKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHhhHHHHHHHHHHHHhcChHh-----hHHH----HHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 4567777777777777777766 3445 777888888888888888888877554
No 345
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=87.05 E-value=2.5 Score=23.25 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
|+++|.++..+.|.. +..++.+|.=+.-..-|+++....+++|.+
T Consensus 63 sve~~s~a~~Lsp~~---------A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSPDS---------AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccChhH---------HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 555566665555443 444455555544445556666666666543
No 346
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.86 E-value=5.6 Score=24.83 Aligned_cols=75 Identities=13% Similarity=0.003 Sum_probs=41.4
Q ss_pred hhhHHHHHHh----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-------CHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDK----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-------KYEEALEFHKQALV 71 (90)
Q Consensus 3 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~ 71 (90)
..++|..|.. ..|+.+|..+|++|.+.--... ......+|..|..-. +...|...|.++-.
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~ 183 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE 183 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH
Confidence 4567777776 4589999999999887632210 011244444444431 22356666666554
Q ss_pred hCCCChHHHHHHHHHH
Q psy8498 72 VAPMKASTFCCIVVKE 87 (90)
Q Consensus 72 ~~~~~~~~~~~l~~~~ 87 (90)
.. ++.+...+|.+|
T Consensus 184 ~~--~~~a~~~lg~~y 197 (292)
T COG0790 184 LG--NPDAQLLLGRMY 197 (292)
T ss_pred hc--CHHHHHHHHHHH
Confidence 43 444555555443
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.69 E-value=1.9 Score=25.02 Aligned_cols=56 Identities=14% Similarity=-0.119 Sum_probs=36.5
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
|.++...|++++|+..|++..+-.+.. +...--++.|++-+|+. .=..+..++++-
T Consensus 51 g~l~i~rg~w~eA~rvlr~l~~~~~~~---------p~~kAL~A~CL~al~Dp-~Wr~~A~~~le~ 106 (153)
T TIGR02561 51 GWLLIARGNYDEAARILRELLSSAGAP---------PYGKALLALCLNAKGDA-EWHVHADEVLAR 106 (153)
T ss_pred HHHHHHcCCHHHHHHHHHhhhccCCCc---------hHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Confidence 778999999999999998876643322 22224467777777774 334444555544
No 348
>KOG2610|consensus
Probab=86.29 E-value=2.3 Score=28.32 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=22.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+..+.+-|-|++|++.-++++++.+..
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~~D 208 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINRFD 208 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCCcc
Confidence 566778899999999999999887654
No 349
>KOG2396|consensus
Probab=86.20 E-value=6.2 Score=27.52 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhhCCCChHHH
Q psy8498 14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 80 (90)
+.|.+--..|.+++...|.+ .+.| ..-|.-.+.-+. .+.|...+.++++.+|+.+..+
T Consensus 119 ~~~~~v~ki~~~~l~~Hp~~-----~dLW----I~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHPNN-----PDLW----IYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred cchhHHHHHHHHHHHhCCCC-----chhH----HhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 33777777788888887777 4555 444555555555 8888899999999988877654
No 350
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=85.85 E-value=1.6 Score=17.61 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=23.0
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
.++.+-.++.+.|+++.|.+.+++-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 357788899999999999999998654
No 351
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=85.83 E-value=3.2 Score=22.39 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=21.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSK 29 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~ 29 (90)
.-|.+....||+..|++...++.+.
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3477888899999999999999665
No 352
>KOG1915|consensus
Probab=85.64 E-value=4.8 Score=28.10 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=38.4
Q ss_pred hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498 13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (90)
++++..|...|++|+...-.+ .+.| ...+.+-.+......|...+.+|+.+-|.-...+
T Consensus 86 q~e~~RARSv~ERALdvd~r~-----itLW----lkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW 144 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRN-----ITLW----LKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW 144 (677)
T ss_pred HHHHHHHHHHHHHHHhccccc-----chHH----HHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH
Confidence 445555666666666554333 3444 6777777888888888888888888877544433
No 353
>KOG3616|consensus
Probab=85.62 E-value=5.7 Score=29.42 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=41.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHH------HHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFME------ALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
+...|.++-+..++++|+++|++ |+++..---+ +...+.-...|.-+..+|+++.|+..|-++-
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp----~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP----EEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc----HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 34567777888888888888765 4554433211 1112223456777888899999998887754
No 354
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=85.34 E-value=6.9 Score=24.43 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHH
Q psy8498 15 SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMK-ASTFCCIVVKE 87 (90)
Q Consensus 15 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~ 87 (90)
++.+|..+|+.+.+. ..+...+++|..|.. ..+..+|..+|++|....... ..+...+|..+
T Consensus 92 ~~~~A~~~~~~~a~~-----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~ 158 (292)
T COG0790 92 DKTKAADWYRCAAAD-----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAY 158 (292)
T ss_pred cHHHHHHHHHHHhhc-----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 456666666633322 113445789998888 458999999999998775322 12255666554
No 355
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.33 E-value=11 Score=26.62 Aligned_cols=64 Identities=11% Similarity=-0.080 Sum_probs=48.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 67 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 67 (90)
..++....-.+++..+......+.+...+.+.+......+.++.-.|..+...|+.+.|+.+|.
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3457777889999999999999888776554321122234456778999999999999999998
No 356
>KOG3364|consensus
Probab=85.26 E-value=1 Score=25.81 Aligned_cols=30 Identities=7% Similarity=-0.048 Sum_probs=26.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.-++..+.+.++|+++.++....++..|++
T Consensus 75 yYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 75 YYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 457889999999999999999999987765
No 357
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.00 E-value=5.5 Score=23.01 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=26.1
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
++.+..+|.+|.+.|+..++-+...+|-+-.
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 5667899999999999999999999987643
No 358
>KOG1310|consensus
Probab=84.87 E-value=4.3 Score=28.66 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q psy8498 15 SYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 15 ~~~~A~~~~~~al~~~~~~ 33 (90)
....++..|.+++...|..
T Consensus 389 ~~~~~i~~~s~a~q~~~~~ 407 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDA 407 (758)
T ss_pred HHHHHHHHHHHHhhhccch
Confidence 3445566666666655543
No 359
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=84.75 E-value=3 Score=23.30 Aligned_cols=29 Identities=38% Similarity=0.387 Sum_probs=25.0
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
..+|..+...|++++|..+|-+|+...|+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 55788899999999999999999999874
No 360
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.70 E-value=3.8 Score=20.88 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=23.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
-|.--...|+|++|+.+|..+++..-..
T Consensus 12 ~A~~eD~~gny~eA~~lY~~ale~~~~e 39 (75)
T cd02680 12 QAFDEDEKGNAEEAIELYTEAVELCINT 39 (75)
T ss_pred HHHHhhHhhhHHHHHHHHHHHHHHHHHh
Confidence 3555678899999999999999988774
No 361
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=83.03 E-value=2.4 Score=17.35 Aligned_cols=27 Identities=37% Similarity=0.420 Sum_probs=20.4
Q ss_pred HHhHHHHHHHh----cCHHHHHHHHHHHHhh
Q psy8498 46 LNNLGHVNRKL----KKYEEALEFHKQALVV 72 (90)
Q Consensus 46 ~~~lg~~~~~~----g~~~~A~~~~~~al~~ 72 (90)
.+.+|.+|..- .+.++|..+|+++.+.
T Consensus 4 ~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 4 QYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 46678777642 3889999999998754
No 362
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=82.86 E-value=7.3 Score=25.18 Aligned_cols=60 Identities=17% Similarity=0.017 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
-.++.|.++..+|+-.++..++...- . .+-+..+..|+...+|+-|-.||..|+.+..++
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~I-G--~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKI-G--LVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCccee-e--eehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 34678999999999998887655321 1 123667888999999999999999999875443
No 363
>PF15469 Sec5: Exocyst complex component Sec5
Probab=82.47 E-value=7.8 Score=22.78 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhh--CCCcchhhHHHHHHh----HHHHHHHhc----CHHHHHHHHHHHHhhCCCChHH
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQL--GGEIIADKWEPLLNN----LGHVNRKLK----KYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~----lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~~ 79 (90)
+...|+|+.++..|.+|..+.... ........|..+-.. -..++.++. ..++..++....++++|....+
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L~~~~dPi 175 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLELNVEEDPI 175 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCCCHH
Confidence 457899999999999999999887 222222233222111 122333333 3555666666666777754444
Q ss_pred HH
Q psy8498 80 FC 81 (90)
Q Consensus 80 ~~ 81 (90)
+.
T Consensus 176 ~~ 177 (182)
T PF15469_consen 176 WY 177 (182)
T ss_pred HH
Confidence 43
No 364
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=82.42 E-value=2.8 Score=17.58 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=18.6
Q ss_pred HHhHH--HHHHHhc-----CHHHHHHHHHHHHhh
Q psy8498 46 LNNLG--HVNRKLK-----KYEEALEFHKQALVV 72 (90)
Q Consensus 46 ~~~lg--~~~~~~g-----~~~~A~~~~~~al~~ 72 (90)
.+++| .++.... ++++|..+|++|.+.
T Consensus 4 ~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 4 QYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 46677 4444433 579999999998764
No 365
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=82.07 E-value=12 Score=28.07 Aligned_cols=68 Identities=25% Similarity=0.209 Sum_probs=47.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
.-+.+|+.+|+|++-+++|.-|++.+|....- ......+.+++=.+.++..+ .|...---++.+.|..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEI--SRLRDHLVYRLHESLYKHRR--EALVFMLLALWIAPEK 624 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhCccc
Confidence 45789999999999999999999999887443 22223344666666655544 5666666677777643
No 366
>KOG1839|consensus
Probab=81.79 E-value=12 Score=28.90 Aligned_cols=70 Identities=21% Similarity=0.131 Sum_probs=53.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+..|++.++...++++-|+++.+.|.+......++.. .....++..++.++.-++++..|+...+....+
T Consensus 1059 ~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~-l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1059 SFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE-LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc-hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 3578899999999999999999999997766644211 112345677888888888888888888777654
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.67 E-value=14 Score=25.19 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=24.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
+..+|.....+|+++-|+++|+++-+...-
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L 379 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKAKDFSGL 379 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCcccc
Confidence 568999999999999999999997665443
No 368
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=80.56 E-value=2 Score=23.97 Aligned_cols=29 Identities=21% Similarity=0.096 Sum_probs=18.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.+|-.+...|++++|..+|-+|+.+.|..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 45666666677777777777777665543
No 369
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.61 E-value=7 Score=21.73 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=23.0
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
+.-+...|..+...|++++|.+.|++++
T Consensus 99 A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 99 ALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4455778999999999999999999875
No 370
>KOG3617|consensus
Probab=79.51 E-value=23 Score=26.81 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=44.2
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh------C----------------CCcchhhHHHHHHhHHHHHHHhcCHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL------G----------------GEIIADKWEPLLNNLGHVNRKLKKYEEA 62 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~----------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A 62 (90)
+-+..+....+|++|..++-.+.+..... + +.+.......++..+|.+..++|.|..|
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 34555677788888887755544433322 1 1122233455678899999999999999
Q ss_pred HHHHHHHH
Q psy8498 63 LEFHKQAL 70 (90)
Q Consensus 63 ~~~~~~al 70 (90)
-+-|.||=
T Consensus 1165 tKKfTQAG 1172 (1416)
T KOG3617|consen 1165 TKKFTQAG 1172 (1416)
T ss_pred HHHHhhhh
Confidence 99999863
No 371
>KOG2709|consensus
Probab=79.50 E-value=3.1 Score=28.31 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.9
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
...+.|.++-+++++++|+.+|++++.+
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 3478899999999999999999999864
No 372
>KOG4814|consensus
Probab=79.28 E-value=14 Score=26.79 Aligned_cols=61 Identities=16% Similarity=-0.057 Sum_probs=47.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
..++..+|....+.++|.+++++|=+..|+. +-+...+-....--|.-++|+.+.......
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~---------~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQS---------PLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcccc---------HHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 3578899999999999999999999988766 334344555556678888999888876644
No 373
>KOG2047|consensus
Probab=79.21 E-value=22 Score=25.94 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=46.8
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhhCCC-cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 8 LSSDKSFSYTVAENCFMEALSKVKQLGGE-IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 8 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
.+-...|++.+-+..|.+|++...-.... .....| ..+|.+|...|+.+.|...|++|++.+
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw----~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLW----VEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHH----HHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 44556788888899999988654332111 124445 889999999999999999999999765
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.75 E-value=22 Score=25.13 Aligned_cols=66 Identities=14% Similarity=-0.037 Sum_probs=47.7
Q ss_pred hHHHHHH-hhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 5 NVELSSD-KSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 5 ~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
.+|.++. ...+++.|+.++.+++.+..+.+- .+..-.+..-++.++.+.+... |+...++.++...
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~---~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCERHRL---TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccch---HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 4566655 888999999999999998876321 1222233455688888888877 9999999887643
No 375
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=77.26 E-value=11 Score=21.86 Aligned_cols=29 Identities=24% Similarity=0.164 Sum_probs=26.1
Q ss_pred HhHHHHHHHhc-CHHHHHHHHHHHHhhCCC
Q psy8498 47 NNLGHVNRKLK-KYEEALEFHKQALVVAPM 75 (90)
Q Consensus 47 ~~lg~~~~~~g-~~~~A~~~~~~al~~~~~ 75 (90)
..+|..+...| +.+++..+|-.|+...|+
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 55799999999 999999999999999874
No 376
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=77.13 E-value=11 Score=21.52 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=32.0
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
...+.-....|++.-|......++..+|++..+..-.+.++.
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~ 115 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALE 115 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 556777888999999999999999999998887766666553
No 377
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=76.56 E-value=15 Score=25.13 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=34.8
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
....|+.+.|..|-+++.+..|...+. + ...=.-.+..|+|+.|++..++..+.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA-----~----~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWA-----A----RATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchH-----H----HHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 345667777777777777766655221 1 22223456789999999998887643
No 378
>KOG2034|consensus
Probab=75.26 E-value=11 Score=28.11 Aligned_cols=54 Identities=19% Similarity=0.057 Sum_probs=41.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
++=.+|.+.|+|++|.++.+.. | .....++...|..+...++|..|.++|-+.+
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~----p--------~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR----P--------DALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC----H--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3456889999998887776554 1 2224466888999999999999999998875
No 379
>KOG2396|consensus
Probab=75.11 E-value=23 Score=24.94 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 20 ENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 20 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
...|+.|...++.+ ...| .+......+.+.+.+-...|.+++...|+++..+..
T Consensus 91 v~lyr~at~rf~~D-----~~lW----~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~ 144 (568)
T KOG2396|consen 91 VFLYRRATNRFNGD-----VKLW----LSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIY 144 (568)
T ss_pred HHHHHHHHHhcCCC-----HHHH----HHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHh
Confidence 34566666655543 2334 555666666676999999999999999999887643
No 380
>KOG4563|consensus
Probab=74.89 E-value=22 Score=23.89 Aligned_cols=64 Identities=16% Similarity=-0.069 Sum_probs=45.1
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 68 (90)
...|.-+..++++++|...|..|..+....-++.. ..-...++..|.++.+.++.+.+.-.+-.
T Consensus 45 v~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~-~e~~eal~~YGkslLela~~e~~VL~nal 108 (400)
T KOG4563|consen 45 VQAGRRALCNNDIDKAVDALSEATELSDEIYGEKH-LETFEALFLYGKSLLELAKEESQVLGNAL 108 (400)
T ss_pred HHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45678888999999999999999998877632211 11123457778888888887766655443
No 381
>KOG1070|consensus
Probab=74.43 E-value=28 Score=27.71 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=37.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
|...|..+..+.+-++|-+.+.+|++-.|.... .......+.+-++.|+.+.+...|+-.+.-+|+
T Consensus 1567 W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH-------v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1567 WIMYADFLLRQNEAEAARELLKRALKSLPKQEH-------VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh-------HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 344556666677777777777888777776310 112234455555555555555555555555543
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.97 E-value=5.6 Score=23.50 Aligned_cols=30 Identities=10% Similarity=-0.119 Sum_probs=26.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
+.+++.++...|+.++|....+++..++|.
T Consensus 147 ~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 147 YQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 457789999999999999999999999983
No 383
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=73.74 E-value=9.9 Score=25.20 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=44.0
Q ss_pred hhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 12 KSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 12 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
+.+-|.+--..|-+++...|.+ .+.|..+ -+.=+...++++.+...|.+++.++|.+|..+.
T Consensus 119 k~k~y~~~~nI~~~~l~khP~n-----vdlWI~~---c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 119 KKKMYGEMKNIFAECLTKHPLN-----VDLWIYC---CAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-----ceeeeee---ccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3445555566677777777766 4556321 344566789999999999999999998887753
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.66 E-value=11 Score=19.55 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=29.3
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVK 86 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 86 (90)
..-|.=++...+.++|+...+++++..++.+..+..+|.+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l 49 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYL 49 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4456666778888999999999998877665555555544
No 385
>KOG0686|consensus
Probab=72.46 E-value=28 Score=23.86 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=41.5
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++..+|.-|..-|+.+.|+++|-++.+. ... .......+.|+=.+-..+|+|..-..+-.+|-+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3567888899999999999999996654 332 1222334455555555666666666666555443
No 386
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=72.31 E-value=9.7 Score=21.35 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=19.6
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 68 (90)
+.-+...|..+...|++.+|.+.|+.
T Consensus 99 AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 99 ALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 44456668888888888888888764
No 387
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.70 E-value=11 Score=25.01 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCC----cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 14 FSYTVAENCFMEALSKVKQLGGE----IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 14 g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
..|.++...|..++... +...- ........++..++.++..+|+++.|.+..++|+-.
T Consensus 8 ~~Y~~~q~~F~~~v~~~-Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~ 69 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH-DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA 69 (360)
T ss_pred HHHHHHHHHHHHHHHcc-CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777777776544 11000 001223556688999999999999999999999843
No 388
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=70.65 E-value=7.6 Score=21.08 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=23.3
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+..++.+|...|.+++|++...+-..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 48899999999999999999998655
No 389
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.84 E-value=6.1 Score=26.65 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=27.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLG 34 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 34 (90)
+-.+|.+|..+++|.+|++.|...+-...+..
T Consensus 167 ~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 167 YYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999887666654
No 390
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.71 E-value=11 Score=18.17 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=19.2
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 8 LSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 8 ~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
..+...|++++|.++..+..+-...
T Consensus 31 ~gllqlg~~~~a~eYi~~~~~~~~~ 55 (62)
T PF14689_consen 31 YGLLQLGKYEEAKEYIKELSKDLQQ 55 (62)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4577899999999999988776544
No 391
>KOG1811|consensus
Probab=69.55 E-value=39 Score=24.74 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 23 FMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 23 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
|+-+...-.+-+-+. ...| ...|....+.+++..|..-|+|++++..
T Consensus 572 YqlaV~mckKc~iD~-f~aW----~AWGlA~Lk~e~~aaAR~KFkqafklkg 618 (1141)
T KOG1811|consen 572 YQLAVEMCKKCGIDT-FGAW----HAWGLACLKAENLAAAREKFKQAFKLKG 618 (1141)
T ss_pred HHHHHHHHhhcCCCc-ccHH----HHHHHHHHHhhhHHHHHHHHHHHhCCCC
Confidence 444444444443332 2455 8899999999999999999999998864
No 392
>KOG1310|consensus
Probab=69.47 E-value=13 Score=26.51 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
-.|+.-..+|+++.|-. -+.++.|+.++.+++++.+|+++..-+....|
T Consensus 428 ~~AlrDch~Alrln~s~---------~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 428 YLALRDCHVALRLNPSI---------QKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHhHHhhccCChHH---------HHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 33444444555544433 44569999999999999999998877665555
No 393
>KOG0686|consensus
Probab=68.72 E-value=35 Score=23.44 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=29.8
Q ss_pred hhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 40 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 40 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
+.....+..+|.-|..-|+.+.|+++|-++.....+
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs 182 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS 182 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc
Confidence 333556799999999999999999999998777653
No 394
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=68.66 E-value=33 Score=23.07 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=25.2
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (90)
-.++.+..-.|++++|.+.++++.++.|...
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4456677779999999999999999987543
No 395
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.50 E-value=31 Score=22.77 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
++-++-+.+.++-.+..+++.. ...+..|+|..|+..++.+.+.++..+.+.-+
T Consensus 92 eeki~Elde~i~~~eedngE~e---~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a 145 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETE---GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDA 145 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4445566666665555544421 13345999999999999999999998877543
No 396
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=68.41 E-value=24 Score=27.22 Aligned_cols=31 Identities=13% Similarity=-0.056 Sum_probs=27.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLG 34 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 34 (90)
..+|..+...|++.+|++.|.+|+++.+..+
T Consensus 246 k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~ 276 (1185)
T PF08626_consen 246 KVLGDLYLLAGRWPDALKEYTEAIEILKSSN 276 (1185)
T ss_pred hhhhhHHHHcCCHHHHHHHHHHHHHHHhhcC
Confidence 3578999999999999999999999988763
No 397
>KOG0890|consensus
Probab=67.90 E-value=35 Score=28.49 Aligned_cols=60 Identities=10% Similarity=-0.026 Sum_probs=49.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+.+.|.+....|.++.|-.+..+|.+..+ +.++...|..++..|+...|+...++.+..+
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r~-----------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESRL-----------PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhccc-----------chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 45677888888999999888888877642 4456889999999999999999999999664
No 398
>KOG0546|consensus
Probab=67.48 E-value=2.8 Score=27.77 Aligned_cols=85 Identities=18% Similarity=0.033 Sum_probs=62.8
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhC-C---------CcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLG-G---------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~---------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
+.|.-..+.++|+.|..-|.++++...... . +........+..+++.+-.+.+.+..|+..-..++..++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 456678889999999999999988765210 0 001112233557789999999999999998888888888
Q ss_pred CChHHHHHHHHHHhc
Q psy8498 75 MKASTFCCIVVKEGV 89 (90)
Q Consensus 75 ~~~~~~~~l~~~~~~ 89 (90)
+...+++..+..+..
T Consensus 307 s~tka~~Rr~~~~~~ 321 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKL 321 (372)
T ss_pred hhCcHHHHHHhHHHh
Confidence 888888888877654
No 399
>KOG2041|consensus
Probab=67.29 E-value=13 Score=27.46 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=41.0
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhC---------CC-----cchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLG---------GE-----IIADKWEPLLNNLGHVNRKLKKYEEALEFHK 67 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~-----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 67 (90)
++.++|..+..+.++++|.++|...-....... .- ...+. ...+-.+|..+...|--++|.+.|-
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHH
Confidence 467889999999999999998876543322210 00 00000 1123556777777788888887776
Q ss_pred H
Q psy8498 68 Q 68 (90)
Q Consensus 68 ~ 68 (90)
+
T Consensus 877 r 877 (1189)
T KOG2041|consen 877 R 877 (1189)
T ss_pred h
Confidence 5
No 400
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=67.07 E-value=9.3 Score=22.15 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 15 SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 15 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
+.++=+.+|.+-+..-+..-... .........+.++..--++..+=+..|++.+
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g--~~~~ega~hf~nAl~Vc~qP~~LL~iyq~tl 135 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQG--TNVDEGAVHFYNALKVYPQPQQLLSIYQQTL 135 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCCCHHHHHHHHHhhC
Confidence 44455555555555554442111 0001111334444444566666666666655
No 401
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=65.60 E-value=41 Score=23.04 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=22.9
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+.|.-+...|++++|+..|+..+...+-.
T Consensus 209 k~gyk~~t~gKF~eA~~~Fr~iL~~i~l~ 237 (422)
T PF06957_consen 209 KEGYKLFTAGKFEEAIEIFRSILHSIPLL 237 (422)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhee
Confidence 35667888999999999999999887765
No 402
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.56 E-value=29 Score=21.28 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=33.5
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHh
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM----KASTFCCIVVKEG 88 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~ 88 (90)
+.....+|..|. ..+.++++..+-+++++.+. ++..+..++.++.
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ 189 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 345577887776 67889999999999998653 4666777776654
No 403
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.20 E-value=19 Score=23.44 Aligned_cols=42 Identities=19% Similarity=0.037 Sum_probs=34.8
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
..-+.-....|++.+|...+.++++..|++..+...++.++.
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l 179 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL 179 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445667788999999999999999999998777777776653
No 404
>KOG0687|consensus
Probab=65.19 E-value=39 Score=22.62 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++-++-+.+.++-..++.++ .....++.+.|..|++.|+.+.|.+.+.+...-
T Consensus 81 eeki~eld~~iedaeenlGE---~ev~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE---SEVREAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34455666777666666443 122445699999999999999999999887653
No 405
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=65.11 E-value=4.8 Score=25.42 Aligned_cols=34 Identities=26% Similarity=0.173 Sum_probs=27.7
Q ss_pred HHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 52 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 52 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
...+.|+.+.+.+.|.|++.+.|+....++.+|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~ 37 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGE 37 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcch
Confidence 3456789999999999999999987777777664
No 406
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=65.04 E-value=40 Score=22.70 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=30.2
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
..-|.++.++|+.++|...|++++.+.++.....+-
T Consensus 369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 369 AARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 556899999999999999999999998766655443
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.96 E-value=39 Score=22.57 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=42.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHh--HHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN--LGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
.+.-....++|..|...|....+..+.. . . + ..+.. .|.-++..-++++|.++++..+..
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~--~---~-~-~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGR--E---E-Y-QRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCch--h---h-H-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455678999999999999988752222 1 1 1 12233 466677799999999999987754
No 408
>KOG4151|consensus
Probab=64.64 E-value=9.4 Score=27.83 Aligned_cols=76 Identities=16% Similarity=-0.008 Sum_probs=46.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHH--HhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNR--KLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
|..+...++|..+..-|..++.+.|.... .......+.+.++. ..|+|..++....-++...|....++...+
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----VVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccch-----hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 55677778888887778888887774411 11223344444443 466777777777777777776655555544
Q ss_pred HHH
Q psy8498 85 VKE 87 (90)
Q Consensus 85 ~~~ 87 (90)
.+|
T Consensus 135 ~~y 137 (748)
T KOG4151|consen 135 RKY 137 (748)
T ss_pred hHH
Confidence 443
No 409
>KOG0687|consensus
Probab=64.32 E-value=40 Score=22.54 Aligned_cols=31 Identities=10% Similarity=-0.135 Sum_probs=25.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+.+.+.-|.+-||-+.|++.+.+..+-.-..
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~ 137 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSL 137 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 4577888999999999999999888765444
No 410
>KOG3677|consensus
Probab=63.79 E-value=10 Score=26.01 Aligned_cols=63 Identities=10% Similarity=-0.038 Sum_probs=38.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+..+-..+.-.|||.. -.+-+++.|..-......- .+.+..|.+|.-+|+|.+|++.|...|.
T Consensus 238 L~GLlR~H~lLgDhQa----t~q~idi~pk~iy~t~p~c--~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQA----TSQILDIMPKEIYGTEPMC--RVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHhhhhHh----hhhhhhcCchhhcCcccce--eEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777788543 2233444443311111111 1226789999999999999999988773
No 411
>KOG2908|consensus
Probab=63.57 E-value=42 Score=22.49 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=47.1
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+..+.+|.++|+++.++..+.....+.+ .....+...+|.++...|+..++.+.....-.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~---~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEP---DAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3455678999999999999887776443 23455678889999999999999988887654
No 412
>KOG0739|consensus
Probab=63.31 E-value=42 Score=22.40 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=16.5
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
-...++|++|..+|+.+++.+..
T Consensus 20 eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 20 EDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred hcchhchHHHHHHHHHHHHHHHH
Confidence 34567888888888888776543
No 413
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.67 E-value=24 Score=19.35 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=29.7
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (90)
.+-.||.+|...|+.++|.+.|+.--.+.|+...
T Consensus 74 ~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 74 YHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 4678999999999999999999998888886544
No 414
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=62.59 E-value=55 Score=23.53 Aligned_cols=76 Identities=14% Similarity=-0.019 Sum_probs=45.3
Q ss_pred hhHHHHHHhhCCHHHHHHHHHH-HHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFME-ALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
.|++.+....|....+..-+.. +....+.+..- -...... ..+|.....+|+..++....+++..+.|+++.....
T Consensus 105 ~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 105 QNLAAALELDGLQFLALADISEIAEWLSPDNAEF--LGHLIRF-YQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHH--HhhHHHH-HHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 3555554444444444433333 55554444110 0011222 337999999999999999999999999987665443
No 415
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=62.20 E-value=26 Score=23.76 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhH---HHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 19 AENCFMEALSKVKQLGGEIIADKW---EPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 19 A~~~~~~al~~~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
|..++++|++....-..+...+.| +.++..||+++- .+-.+-..+|++|-
T Consensus 330 a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d--~eS~eQe~~Y~eAE 382 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYD--NESKEQEKAYKEAE 382 (404)
T ss_dssp HHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-S--SHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccc--cchHHHHHHHHHHH
Confidence 455556666555544222223445 223455555542 12223344455444
No 416
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=61.57 E-value=24 Score=19.11 Aligned_cols=31 Identities=16% Similarity=0.026 Sum_probs=25.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+...|..|...||.+.|-.+|.+.+.+....
T Consensus 41 l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki 71 (115)
T PF08969_consen 41 LLREAEEYRQEGDEEQAYVLYMRYLTLVEKI 71 (115)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999998433
No 417
>KOG3616|consensus
Probab=61.29 E-value=45 Score=25.19 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=27.2
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
++..++..+...|++++|-..|.++++++.
T Consensus 997 vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 997 VHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred chhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 458899999999999999999999999875
No 418
>KOG1920|consensus
Probab=59.10 E-value=87 Score=24.64 Aligned_cols=66 Identities=23% Similarity=0.135 Sum_probs=41.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHH------HHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEA------LSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
+.+.+..|...|+.++|++.|+.+ +.+..+.... .......-..|...+..+|++-+|-+.....+
T Consensus 955 ~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~--~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEG--KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred ccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 457788999999999999998764 4554443211 11111112556667777777777766666554
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.53 E-value=44 Score=21.05 Aligned_cols=27 Identities=22% Similarity=0.043 Sum_probs=21.9
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQA 69 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 69 (90)
+..+..+|..+.+.|++.+|..+|-.+
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 456788999999999999999988553
No 420
>KOG2581|consensus
Probab=58.16 E-value=14 Score=25.31 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=26.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
-+|.+..-+++|+.|.++|..|++..|..
T Consensus 252 Y~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 252 YLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 47889999999999999999999999964
No 421
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=57.89 E-value=8.9 Score=22.07 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.0
Q ss_pred HHHHHHhcCHHHHHHHHHH
Q psy8498 50 GHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 50 g~~~~~~g~~~~A~~~~~~ 68 (90)
=.+|.++|+|++|+++.+.
T Consensus 110 Wk~yl~~~~fd~Al~~~~~ 128 (147)
T PF05131_consen 110 WKIYLDKGDFDEALQYCKT 128 (147)
T ss_pred HHHHHhcCcHHHHHHHccC
Confidence 3568889999999998877
No 422
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=57.40 E-value=55 Score=23.36 Aligned_cols=20 Identities=10% Similarity=-0.079 Sum_probs=13.1
Q ss_pred HHHHHhhCCHHHHHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEA 26 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~a 26 (90)
+.+....|+|+.+.....-+
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~ 349 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDV 349 (831)
T ss_pred HHHHHHhhhHHHHHHHhhch
Confidence 56677777777776655443
No 423
>KOG0889|consensus
Probab=56.28 E-value=1.4e+02 Score=26.55 Aligned_cols=62 Identities=18% Similarity=0.087 Sum_probs=41.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC----HHHHHHHHHHHHhhC
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK----YEEALEFHKQALVVA 73 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----~~~A~~~~~~al~~~ 73 (90)
|..+.+.|+.++|-..|..|+.+.... ...|+.=...+=..+.+.+. -..|+.||-||....
T Consensus 2819 G~f~~kL~~~eeAn~~fs~AvQi~~~l-----~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~ 2884 (3550)
T KOG0889|consen 2819 GMFLEKLGKFEEANKAFSAAVQIDDGL-----GKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY 2884 (3550)
T ss_pred hHHHHHhcCcchhHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc
Confidence 888999999999999999999998776 34442222222222333333 356778788877654
No 424
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.22 E-value=57 Score=21.63 Aligned_cols=64 Identities=14% Similarity=-0.011 Sum_probs=41.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 69 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 69 (90)
.++.-.-+.+++++|+..|++.+...-.. ++........+..+++.+|...|++..=-+....+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~-dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s 71 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSK-DEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS 71 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCCh-hhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh
Confidence 45666677899999999999988651111 11112222445588999999999976555544443
No 425
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.57 E-value=46 Score=20.35 Aligned_cols=64 Identities=6% Similarity=-0.066 Sum_probs=44.5
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCc-----------chhhH-HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEI-----------IADKW-EPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
|.+.+.-+++-..|..++++....+.+. ....+ .......|.+....|+...|..+|.+.-...
T Consensus 49 yw~~s~as~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 49 YWQTSRASKSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred hhcccccccchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 5556666777778888888877764430 00111 1235788999999999999999999976543
No 426
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.56 E-value=41 Score=20.51 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=25.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 49 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 49 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.-.++.+.|.+++|.+.+++-.. +|+.......+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL 150 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKL 150 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHH
Confidence 35678899999999999999887 66554444333
No 427
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=55.21 E-value=17 Score=15.34 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 58 KYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
+++.|...|++.+...|+ +..+...
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 578899999999988764 4444443
No 428
>KOG3677|consensus
Probab=55.02 E-value=69 Score=22.26 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=25.2
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
-+|.+|..+|+|.+|++.|.+.+-...+.
T Consensus 277 ~VGFayLmmrryadai~~F~niLlyIqrt 305 (525)
T KOG3677|consen 277 QVGFAYLMMRRYADAIRVFLNILLYIQRT 305 (525)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999988776655
No 429
>KOG0529|consensus
Probab=54.29 E-value=68 Score=21.99 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC--HHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498 15 SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK--YEEALEFHKQALVVAPMKASTFCCIVVK 86 (90)
Q Consensus 15 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~l~~~ 86 (90)
-.++-+.+...+++..|+. ...| +....++.+.+. +..-++..+++++.+|.+..++...-+|
T Consensus 90 ~ld~eL~~~~~~L~~npks-----Y~aW----~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV 154 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKS-----YGAW----HHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV 154 (421)
T ss_pred hhHHHHHHHHHHHHhCchh-----HHHH----HHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence 3455566677777777766 4445 777888877554 6888999999999999887776544333
No 430
>KOG2422|consensus
Probab=54.14 E-value=45 Score=24.02 Aligned_cols=59 Identities=20% Similarity=0.075 Sum_probs=44.3
Q ss_pred hhCCHHHHHHHHHHHHHHHHhhCCCc---chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 12 KSFSYTVAENCFMEALSKVKQLGGEI---IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 12 ~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
....|++|...|.-+....+.++--. ........+..++...+.+|+.+.|.+..+++|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 45678899999999888877663211 122234445779999999999999999999988
No 431
>KOG4056|consensus
Probab=53.06 E-value=43 Score=19.31 Aligned_cols=29 Identities=28% Similarity=0.182 Sum_probs=26.0
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
..+|..+..+|+++++..++-.|+...|+
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgq 113 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQ 113 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCC
Confidence 45799999999999999999999988874
No 432
>KOG0276|consensus
Probab=52.90 E-value=72 Score=23.34 Aligned_cols=67 Identities=21% Similarity=0.133 Sum_probs=44.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh------CCCcchhh-----HHHHHHhHH-HHHHHhcCHHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL------GGEIIADK-----WEPLLNNLG-HVNRKLKKYEEALEFHKQA 69 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~-----~~~~~~~lg-~~~~~~g~~~~A~~~~~~a 69 (90)
+..+|.+....|++..|.+||.++.+...-. ++...... ...-.+|++ .++...|+++++++.....
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4578999999999999999999987764433 11110000 000114444 4678899999999887765
No 433
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=52.79 E-value=22 Score=19.50 Aligned_cols=20 Identities=10% Similarity=-0.080 Sum_probs=14.7
Q ss_pred HHHHHHHhcCHHHHHHHHHH
Q psy8498 49 LGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 49 lg~~~~~~g~~~~A~~~~~~ 68 (90)
++.|-.+.|..++......+
T Consensus 74 ~ALce~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 74 LALCEWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHhhccHHHHHHHHHH
Confidence 78888888888776665544
No 434
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=52.69 E-value=52 Score=20.19 Aligned_cols=58 Identities=21% Similarity=0.153 Sum_probs=35.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 67 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 67 (90)
+......|++++|...+++|.+.....+.. -..++.. ..-|.|---+..|-+|.-.|.
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~--l~~~pel-~~ag~~~~a~QEyvEA~~l~~ 93 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKASEAVEKLKRL--LAGFPEL-YFAGFVTTALQEYVEATLLYS 93 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHH--HhhhHHH-HHHHhhcchHHHHHHHHHHHH
Confidence 445667899999999999998887776321 1222222 223444444555556555443
No 435
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=52.16 E-value=32 Score=22.33 Aligned_cols=60 Identities=10% Similarity=-0.082 Sum_probs=37.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+..+...+..+.|+..++..+...... ...-.....++.++...|.++-|...|++..+.
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~------R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREP------RERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCCh------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455566666666655543322211 111112355799999999999999999997654
No 436
>KOG0292|consensus
Probab=52.10 E-value=1.1e+02 Score=23.62 Aligned_cols=30 Identities=33% Similarity=0.367 Sum_probs=25.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498 50 GHVNRKLKKYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 50 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (90)
=.+++|.+++..|.....+.+++.|..+.+
T Consensus 1091 ~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1091 MNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 457899999999999999999998865544
No 437
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=51.92 E-value=32 Score=20.45 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=26.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+++|+-.-|...|+|+-|+...+.+++-....
T Consensus 142 tL~nlv~q~~~q~r~evav~~~KqalEdl~~~ 173 (181)
T PF09311_consen 142 TLHNLVIQYESQGRYEVAVPLCKQALEDLEKE 173 (181)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46788899999999999999999999765443
No 438
>KOG1839|consensus
Probab=51.41 E-value=69 Score=25.19 Aligned_cols=70 Identities=19% Similarity=0.062 Sum_probs=53.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+.|++.......+...|...+.++..+..-.-++ .+...+.+..+++.++...++++.|+++.+.|+.+.
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge-~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE-DHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCC-CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888999988888875544222 223334566889999999999999999999999864
No 439
>KOG1538|consensus
Probab=50.83 E-value=40 Score=24.89 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=14.2
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQA 69 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~a 69 (90)
++...|..+.+..+|++|-+.|-+|
T Consensus 806 Vy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 806 VYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3455566666666666665555443
No 440
>KOG3783|consensus
Probab=50.78 E-value=89 Score=22.26 Aligned_cols=62 Identities=5% Similarity=-0.127 Sum_probs=46.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+-+..+...|+-+.|+..++..++ ++- .+....+++.+|.++--+.+|.+|..++.....+.
T Consensus 272 ~~ar~l~~~g~~eaa~~~~~~~v~--~~~-----kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des 333 (546)
T KOG3783|consen 272 MEARILSIKGNSEAAIDMESLSIP--IRM-----KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES 333 (546)
T ss_pred HHHHHHHHcccHHHHHHHHHhccc--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Confidence 345666777778888888888888 222 23334567888999999999999999998877665
No 441
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.53 E-value=77 Score=21.46 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=39.3
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 68 (90)
+.-....++|..|...|+++...............+ .....|..++..-++++|.+++++
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~--~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAM--IKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHH--HHHHHHHHHHHccCHHHHHHHHhh
Confidence 446778999999999999998763221111001111 123346667779999999999984
No 442
>KOG0985|consensus
Probab=50.48 E-value=74 Score=25.00 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=22.3
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+..++..+..+|+|+.|.+..++|-..
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 366888889999999999999987543
No 443
>KOG1914|consensus
Probab=50.04 E-value=95 Score=22.40 Aligned_cols=54 Identities=15% Similarity=-0.001 Sum_probs=38.6
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
|.-.+|++-|.+.|+-.++.+++. +..-......+..+++-..+...|++++.-
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~---------p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDS---------PEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 556788888888888888877665 222255566677778888888888888765
No 444
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=48.99 E-value=29 Score=17.84 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=20.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 49 LGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 49 lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
...-....||++.|.+..++|....
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHHH
Confidence 3555778999999999999987653
No 445
>KOG2460|consensus
Probab=48.81 E-value=27 Score=24.69 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=25.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
-|+..|...+.|.+|..+|.+|.+...+-
T Consensus 427 ~iA~sY~a~~K~~EAlALy~Ra~sylqe~ 455 (593)
T KOG2460|consen 427 YIAVSYQAKKKYSEALALYVRAYSYLQEV 455 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999887765
No 446
>KOG4014|consensus
Probab=48.76 E-value=63 Score=19.96 Aligned_cols=61 Identities=15% Similarity=-0.021 Sum_probs=39.2
Q ss_pred HHhhCCHHHHHHH-HHHHHHHHHhhCCCcchhhHHHHHHhHHHHHH-----HhcCHHHHHHHHHHHHhhC
Q psy8498 10 SDKSFSYTVAENC-FMEALSKVKQLGGEIIADKWEPLLNNLGHVNR-----KLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 10 ~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~-----~~g~~~~A~~~~~~al~~~ 73 (90)
+...|+|-++++- |++|.+++..+=++.. ++...+.+|.-+. ..++...|+++|+.+...+
T Consensus 37 C~lLgdYlEgi~knF~~A~kv~K~nCden~---y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n 103 (248)
T KOG4014|consen 37 CQLLGDYLEGIQKNFQAAVKVFKKNCDENS---YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN 103 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccC---CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC
Confidence 5567888888765 9999999888733311 1222244444332 2356889999999987654
No 447
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=48.69 E-value=78 Score=21.36 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=26.5
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+..+..+|.+..-+|+|+-|...|+.+.+..
T Consensus 208 E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 208 EAQMRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4456889999999999999999999987643
No 448
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=48.28 E-value=43 Score=17.94 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=15.1
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHH
Q psy8498 8 LSSDKSFSYTVAENCFMEALSKV 30 (90)
Q Consensus 8 ~~~~~~g~~~~A~~~~~~al~~~ 30 (90)
.-..+.|+|++|.++.+++-+..
T Consensus 25 l~~a~~gdfe~A~~~l~eA~~~l 47 (99)
T TIGR00823 25 LKAAKAGDFAKARALVEQAGMCL 47 (99)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Confidence 33566777777777777766544
No 449
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=48.22 E-value=43 Score=17.89 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=15.8
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHH
Q psy8498 8 LSSDKSFSYTVAENCFMEALSKVK 31 (90)
Q Consensus 8 ~~~~~~g~~~~A~~~~~~al~~~~ 31 (90)
.-..+.|+|++|.++.+++-+...
T Consensus 23 l~~a~~g~fe~A~~~l~ea~~~l~ 46 (97)
T cd00215 23 LKAAKEGDFAEAEELLEEANDSLN 46 (97)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 335667777777777777665443
No 450
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=47.71 E-value=46 Score=18.05 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=16.0
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHH
Q psy8498 8 LSSDKSFSYTVAENCFMEALSKVK 31 (90)
Q Consensus 8 ~~~~~~g~~~~A~~~~~~al~~~~ 31 (90)
.-..+.|+|++|.++.++|-+...
T Consensus 28 l~~ak~gdf~~A~~~l~eA~~~l~ 51 (104)
T PRK09591 28 FAAMREGNFDLAEQKLNQSNEELL 51 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 345667888888777777665443
No 451
>KOG2561|consensus
Probab=47.20 E-value=98 Score=21.74 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 49 LGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 49 lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
.|.+.+.+|+-++|.++++.+..
T Consensus 273 QGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 273 QGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHH
Confidence 49999999999999999998764
No 452
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=46.94 E-value=75 Score=20.29 Aligned_cols=66 Identities=11% Similarity=-0.005 Sum_probs=39.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchh--hHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIAD--KWEPLLNNLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 68 (90)
+.++|.+|.++.-.|+++..+-.+++...-+....... .....+..++.++.....++.+-.....
T Consensus 150 f~k~g~~~~Em~~~Er~lD~~IdlLk~d~LdE~~~~~~L~r~i~~~~~l~~~~~~~~~~d~~~~~~~~ 217 (274)
T PF12455_consen 150 FLKMGGLYPEMEPVERALDSWIDLLKKDQLDENTCADELERSIAYFSHLAEVHLPEELEDCADELLDR 217 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHH
Confidence 56789999999999999999999998755543321111 1122345555555443334444333333
No 453
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=46.79 E-value=37 Score=18.55 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=17.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVK 31 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~ 31 (90)
|.-+.+.|+|++|....++|-+...
T Consensus 26 Al~~Ak~g~f~~A~~~i~eA~~~l~ 50 (105)
T COG1447 26 ALKAAKEGDFEEAEELIQEANDALN 50 (105)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4557778888888888777665443
No 454
>KOG0276|consensus
Probab=46.06 E-value=62 Score=23.65 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=24.2
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+..||.+....|++..|.+++.++..+
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcch
Confidence 388999999999999999999998754
No 455
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.96 E-value=53 Score=18.25 Aligned_cols=20 Identities=10% Similarity=-0.160 Sum_probs=16.1
Q ss_pred HHHHHHHhcCHHHHHHHHHH
Q psy8498 49 LGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 49 lg~~~~~~g~~~~A~~~~~~ 68 (90)
++.+-.+.|..+++...+.+
T Consensus 75 ~AL~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 75 AALCAWKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHH
Confidence 78888899999888888875
No 456
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.50 E-value=89 Score=20.78 Aligned_cols=32 Identities=3% Similarity=-0.125 Sum_probs=26.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
++.|+|..|.+-+|-+.+.++..+.++-+-..
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST 148 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 35789999999999999999998888766554
No 457
>KOG2997|consensus
Probab=45.36 E-value=71 Score=21.31 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=20.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498 49 LGHVNRKLKKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 49 lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (90)
-|....+.|..-+|+..|+.|+++.|+--
T Consensus 25 ~av~~Eq~G~l~dai~fYR~AlqI~~diE 53 (366)
T KOG2997|consen 25 KAVLKEQDGSLYDAINFYRDALQIVPDIE 53 (366)
T ss_pred HHHHHhhcCcHHHHHHHHHhhhcCCchHH
Confidence 34444445777799999999999987533
No 458
>KOG1463|consensus
Probab=44.70 E-value=98 Score=20.98 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=44.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
.+...|.+.++|.+|+......++-.++.++.... ..++..-..+|+.+....+|..-..-|.
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL---vev~llESK~y~~l~Nl~KakasLTsAR 195 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILL---VEVHLLESKAYHALRNLPKAKASLTSAR 195 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce---eeehhhhhHHHHHHhcchhHHHHHHHHH
Confidence 56778999999999999999988888887655321 1122334566667777777777666654
No 459
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=44.53 E-value=56 Score=18.12 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=16.0
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHH
Q psy8498 8 LSSDKSFSYTVAENCFMEALSKVK 31 (90)
Q Consensus 8 ~~~~~~g~~~~A~~~~~~al~~~~ 31 (90)
.-..+.|+|++|.++.++|-+...
T Consensus 39 l~~Ak~gdfe~A~~~l~eA~e~l~ 62 (115)
T PRK10454 39 LKQAKQGDFAAAKAMMDQSRMALN 62 (115)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345667788877777777665443
No 460
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=44.50 E-value=1.2e+02 Score=21.97 Aligned_cols=62 Identities=19% Similarity=-0.054 Sum_probs=35.8
Q ss_pred hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH-HHhhCCCChHHHHHH
Q psy8498 13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ-ALVVAPMKASTFCCI 83 (90)
Q Consensus 13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~l 83 (90)
.++...+...+..++...+.. ..+..+++.+....|....+.....+ +....|++......+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~---------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 80 LADSTLAFLAKRIPLSVNPEN---------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred cccchhHHHHHhhhHhcCccc---------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 344444444444444443333 44557888887777766666555555 777777766555443
No 461
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=44.44 E-value=45 Score=25.86 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=24.4
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
-.+|..+...|++.+|++.|.+|+...
T Consensus 246 k~~gd~~LlaG~~~dAl~~y~~a~~~~ 272 (1185)
T PF08626_consen 246 KVLGDLYLLAGRWPDALKEYTEAIEIL 272 (1185)
T ss_pred hhhhhHHHHcCCHHHHHHHHHHHHHHH
Confidence 557999999999999999999999764
No 462
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=44.36 E-value=99 Score=21.95 Aligned_cols=53 Identities=13% Similarity=-0.013 Sum_probs=33.6
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
|...|++.-|-..|+-.+..+++. ....+..=..+...++-+.|...|+.+++
T Consensus 442 ~~~~~d~~ta~~ifelGl~~f~d~---------~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 442 YYATGDRATAYNIFELGLLKFPDS---------TLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHhcCCcchHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 556777777777888777777665 11123334455566777777777776653
No 463
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.89 E-value=20 Score=20.48 Aligned_cols=26 Identities=12% Similarity=-0.188 Sum_probs=17.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
..+....+++-.|.+.|+++.+..|.
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~ 52 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPG 52 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCC
Confidence 44556666777788888887775443
No 464
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=43.48 E-value=90 Score=20.25 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=21.1
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
.++.+|......+++.+|+.+++.|...
T Consensus 253 a~~~~a~~~~e~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 253 AYYYHGLKLDEANKIGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 3466677777778888898888888753
No 465
>KOG2460|consensus
Probab=43.15 E-value=43 Score=23.79 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.8
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
.+.++..|.-.++|.+|+..|.++...
T Consensus 425 C~~iA~sY~a~~K~~EAlALy~Ra~sy 451 (593)
T KOG2460|consen 425 CFYIAVSYQAKKKYSEALALYVRAYSY 451 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998854
No 466
>KOG1464|consensus
Probab=42.39 E-value=44 Score=21.95 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=24.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCC
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGE 36 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 36 (90)
|..+.+.|++++|-+-|=+|++.....+.+
T Consensus 238 GKMHlreg~fe~AhTDFFEAFKNYDEsGsp 267 (440)
T KOG1464|consen 238 GKMHLREGEFEKAHTDFFEAFKNYDESGSP 267 (440)
T ss_pred CccccccchHHHHHhHHHHHHhcccccCCc
Confidence 344778899999999999999888777554
No 467
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=42.30 E-value=90 Score=20.53 Aligned_cols=42 Identities=24% Similarity=0.006 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498 18 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 18 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 68 (90)
+|+..++.+++..|.+ ......+-.+|..+|-.+.|...|..
T Consensus 201 ~Ai~lLE~~l~~s~~n---------~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 201 QAIALLEHALKKSPHN---------YQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444455555544443 22336688999999999999999965
No 468
>KOG4459|consensus
Probab=42.22 E-value=1.2e+02 Score=21.23 Aligned_cols=41 Identities=17% Similarity=0.069 Sum_probs=29.9
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
.+..|=.+|++.|...+|++.....+.-+|++..+..++-.
T Consensus 135 py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldy 175 (471)
T KOG4459|consen 135 PYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDY 175 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHH
Confidence 34667788888888888888888877777766665555443
No 469
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=40.95 E-value=1e+02 Score=20.73 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhC----CCcc----hhhHHHHHHhHHHHHHHh---------cCHHHHHHHHHHHHhhCCCChH
Q psy8498 16 YTVAENCFMEALSKVKQLG----GEII----ADKWEPLLNNLGHVNRKL---------KKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 16 ~~~A~~~~~~al~~~~~~~----~~~~----~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~ 78 (90)
-..|+.+|+.-++.....+ ++.. ......+++.+|.+|.+. +....++++|+..+.....++.
T Consensus 265 ~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 265 CSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 3457888888777765432 1111 112234568888888776 5577888888888876544433
No 470
>KOG0292|consensus
Probab=40.84 E-value=67 Score=24.61 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=35.0
Q ss_pred HHHHHHH--HHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 16 YTVAENC--FMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 16 ~~~A~~~--~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++-|+++ .+.|++.....++. ..| .+||..-..+|+.+-|..+|++.-..
T Consensus 650 F~LaLe~gnle~ale~akkldd~---d~w----~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLDDK---DVW----ERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcCcH---HHH----HHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 3334444 45566665555332 445 89999999999999999999996543
No 471
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=40.77 E-value=39 Score=15.25 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=16.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKV 30 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~ 30 (90)
..+-.-....+.+..+++.|++|++..
T Consensus 19 ~eI~~Yle~~~~~~~~~~~fd~aw~~Y 45 (46)
T PF06855_consen 19 DEISSYLESNYDYLESMEIFDRAWSLY 45 (46)
T ss_dssp HHHHHHHHCHCCHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHh
Confidence 344444455666667777777776653
No 472
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=40.61 E-value=59 Score=17.28 Aligned_cols=25 Identities=24% Similarity=0.096 Sum_probs=15.7
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..-+.-..+.|+|++|.+..++|-+
T Consensus 18 ~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 18 AMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555667777777777777653
No 473
>KOG1166|consensus
Probab=40.44 E-value=1.6e+02 Score=22.79 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 23 FMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 23 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
++++...+............+..|-..+..+.+.+.+.+|...|+.+++-.
T Consensus 94 ~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~ 144 (974)
T KOG1166|consen 94 LQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNK 144 (974)
T ss_pred HhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444433332222234445567888999999999999999999998653
No 474
>KOG0508|consensus
Probab=40.21 E-value=70 Score=22.62 Aligned_cols=27 Identities=11% Similarity=-0.052 Sum_probs=24.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
|.+|..+|+++..+++++-|++....+
T Consensus 344 gavyad~g~~~rCi~LWkyAL~mqQk~ 370 (615)
T KOG0508|consen 344 GAVYADSGEFERCIRLWKYALDMQQKN 370 (615)
T ss_pred eeeecCCccHHHHHHHHHHHHHHHHhh
Confidence 567899999999999999999998885
No 475
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=40.02 E-value=1.4e+02 Score=21.55 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=18.4
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..++..|.+ ++.+.+..+|.+++.
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHH
Confidence 445665555 888999999999884
No 476
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=39.88 E-value=86 Score=18.97 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=26.4
Q ss_pred HHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 42 WEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
.+.++...|++..++|+.++|+++..+..+-
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN~vR~R 162 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLNQVRKR 162 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3667788999999999999999999987643
No 477
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=39.37 E-value=46 Score=15.72 Aligned_cols=32 Identities=25% Similarity=0.131 Sum_probs=22.2
Q ss_pred hhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 40 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 40 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..|...+..-..-....|+.++|...++++|.
T Consensus 29 ~FWe~~~~g~~~~~~~~g~~~~A~~~l~~~L~ 60 (60)
T PF10414_consen 29 RFWERFFDGPFAELVLAGDEEEAEALLEQALD 60 (60)
T ss_dssp HHHHHHT-HHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHcCHHHHHHHCCCHHHHHHHHHHhhC
Confidence 44655555556677788999999999998863
No 478
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=38.80 E-value=1.4e+02 Score=21.13 Aligned_cols=38 Identities=8% Similarity=0.061 Sum_probs=32.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 50 GHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 50 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
|..++-+|+|.++.-+..=..+++| .+.++.-+|.|..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~ 506 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLM 506 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHH
Confidence 6668889999999999999999999 7888888888753
No 479
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=38.74 E-value=71 Score=17.71 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=32.6
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
...|+.++|+++.++-.....+.+..-..... ....-. ..+.|+..+|+.+.++-+
T Consensus 12 I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~---~q~fie-ll~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 12 ILNGDIDPAIEWLNENFPELLKRNSSLEFELR---CQQFIE-LLREGDIMEAIEYARKHL 67 (145)
T ss_pred HHcCCHHHHHHHHHHcCHHHHhcCCchhHHHH---HHHHHH-HHHHHhHHHHHHHHHHHh
Confidence 47899999999988765444333222111111 111222 223688899999998855
No 480
>KOG0890|consensus
Probab=38.64 E-value=1.7e+02 Score=24.98 Aligned_cols=81 Identities=11% Similarity=-0.016 Sum_probs=50.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHH-HhhCCCcc-------hhhHHHHHHhHHHHHHHhcCH--HHHHHHHHHHHhhCCC
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKV-KQLGGEII-------ADKWEPLLNNLGHVNRKLKKY--EEALEFHKQALVVAPM 75 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~-------~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~ 75 (90)
.+......|+...|+..+++.++.. |+...+.. .....+++..++....+.|++ .+-+++|+++.++.|+
T Consensus 1708 ~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1708 RAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 4667788999999999999999544 33221111 111122334445555555553 3557889999999986
Q ss_pred ChHHHHHHHHH
Q psy8498 76 KASTFCCIVVK 86 (90)
Q Consensus 76 ~~~~~~~l~~~ 86 (90)
-...++.+|.-
T Consensus 1788 we~~hy~l~~y 1798 (2382)
T KOG0890|consen 1788 WEDKHYHLGKY 1798 (2382)
T ss_pred ccCceeeHHHH
Confidence 66666666643
No 481
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=36.57 E-value=1.3e+02 Score=19.91 Aligned_cols=28 Identities=14% Similarity=-0.009 Sum_probs=22.4
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
.+..+|......+++.+|+.+++.|...
T Consensus 255 A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 282 (346)
T cd09247 255 SQLYLARRLKEAGHIGVAVGVLREALRN 282 (346)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3456677788888999999999998763
No 482
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=36.51 E-value=95 Score=18.50 Aligned_cols=67 Identities=13% Similarity=0.013 Sum_probs=39.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+.|.-..+...++++.|.......-+ .+...... -......+.-|...+..|+.+.+.+..++++++
T Consensus 131 l~N~~~~~i~~~~~~~a~~~l~~l~~-l~~~~~~~--~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~ 197 (220)
T TIGR01716 131 LLNIAVLLIEKNEFSYAQYFLEKLEK-ILDPEDDL--YERILFNFLKGIILYKEGQKESGEEKIEQAIEI 197 (220)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH-HhchhhhH--HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 45666777778888888877777544 33321111 111112344466667788877777777776654
No 483
>KOG1497|consensus
Probab=36.41 E-value=1.3e+02 Score=20.20 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=39.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC-Cc-chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGG-EI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
.++.+|-+.+++..|-..+. -.|...+ .. ........+..+|.+|.+.++..+|..+-.++-
T Consensus 108 ~LAsiYE~Eq~~~~aaq~L~----~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaS 171 (399)
T KOG1497|consen 108 HLASIYEKEQNWRDAAQVLV----GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRAS 171 (399)
T ss_pred HHHHHHHHhhhHHHHHHHHh----ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 46778888888877655432 1121111 00 012224456889999999999999999888863
No 484
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=36.12 E-value=36 Score=13.54 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498 62 ALEFHKQALVVAPMKASTFCCIVVK 86 (90)
Q Consensus 62 A~~~~~~al~~~~~~~~~~~~l~~~ 86 (90)
.+++-.+++..+|++..++...-.+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~l 26 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWL 26 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHH
Confidence 4567778889999988887654433
No 485
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=35.84 E-value=57 Score=15.76 Aligned_cols=57 Identities=7% Similarity=-0.130 Sum_probs=35.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF 65 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 65 (90)
-|..+...|+|=+|=+.++......+.. . ..-....+....|..+.+.|+.+.|.+.
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~--~-~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPGP--E-RDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-CC--H-HHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCcc--h-HHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4667788999999999999888744322 1 0111112334456677788998888765
No 486
>KOG1920|consensus
Probab=35.63 E-value=95 Score=24.45 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=19.3
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
...|..|.+.|+.++|+..|+.+.
T Consensus 956 ~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 956 DEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred cHHHHHHHHhccHHHHHHHHHHhc
Confidence 445888888999999999888765
No 487
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=35.37 E-value=83 Score=17.51 Aligned_cols=70 Identities=11% Similarity=-0.084 Sum_probs=51.5
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC--------CcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGG--------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
.++=.++...|+.+.-..+.++...+...... ++..+. ..++..+.++|...|++..|+++...-.+..|
T Consensus 6 ~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt-~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 6 CNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPT-SRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 45556778889999888888888877654411 111111 44679999999999999999999998877655
No 488
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=35.28 E-value=1.3e+02 Score=19.58 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhCCC-------cchhhH-HHHHHhHHHHHHHhc-----CHHHHHHHHHHHHhh
Q psy8498 17 TVAENCFMEALSKVKQLGGE-------IIADKW-EPLLNNLGHVNRKLK-----KYEEALEFHKQALVV 72 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~-------~~~~~~-~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~ 72 (90)
+..+.-+++|++..|..... .....+ ..+..-++.++...+ ++++|+++.++++.-
T Consensus 142 ~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~ 210 (359)
T cd08977 142 TQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFKG 210 (359)
T ss_pred HHHHHHHHHHHHhccccccccccccccCcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 33455566666665543211 111112 234566788888888 899999999998863
No 489
>KOG4279|consensus
Probab=34.68 E-value=23 Score=26.43 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=20.3
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 9 SSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 9 ~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.|...+..+.|+.+|++|++..|..
T Consensus 296 ~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 296 NYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred CCcchhhHHHHHHHHHHHhccCchh
Confidence 3555667788999999999998875
No 490
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=34.15 E-value=95 Score=17.79 Aligned_cols=29 Identities=7% Similarity=-0.115 Sum_probs=19.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
..+......|+|.-|.++...++...|++
T Consensus 75 ~~A~~~~~~gd~~wA~~L~d~l~~adp~n 103 (141)
T PF14863_consen 75 ERAQAALAAGDYQWAAELLDHLVFADPDN 103 (141)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCc
Confidence 34555677888888888888888877765
No 491
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=33.86 E-value=91 Score=17.51 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=17.0
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
...|....+.|+|+.|.-..+||.++
T Consensus 17 l~~A~~~le~G~y~~a~f~aqQAvel 42 (132)
T COG2250 17 LKLAKRDLELGDYDLACFHAQQAVEL 42 (132)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 33455555677777777777777654
No 492
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=33.61 E-value=1.7e+02 Score=21.13 Aligned_cols=50 Identities=6% Similarity=-0.158 Sum_probs=34.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 67 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 67 (90)
+..+.+.++.+.|-.+|++.+...+++ .+...+..+++.|-...|....+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 49 AEFLHDVNETERAYALYETLIAQNNDE-----------ARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhhhhhhhhhHhHHHHHHHHHHhCCcc-----------hHHHHHHHHHhhhhhhHHHHHHH
Confidence 456778889999999999999887663 12445555555665555555554
No 493
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=33.27 E-value=82 Score=16.82 Aligned_cols=61 Identities=11% Similarity=-0.031 Sum_probs=37.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+.+....|...++.+.....++...+...+. +. +......+..-..+..+|.+++++-...
T Consensus 17 Le~As~~y~~~~n~~~m~~~L~pLh~~l~k~-Pe--------T~~E~~F~~~fg~~L~~A~~~~~~y~~t 77 (100)
T PF08771_consen 17 LEEASRLYFGENNVEKMFKILEPLHEMLEKG-PE--------TLREVSFAQAFGRDLQEAREWLKRYERT 77 (100)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHHHHHHHHS--S--------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHcCC-CC--------CHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455677788999999999999998888773 11 1133333333345556666666665443
No 494
>KOG4521|consensus
Probab=32.78 E-value=2.6e+02 Score=22.47 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=44.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhh------------------CCCcchhhH--HHHHHhHHHHHHHhcCHHHHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQL------------------GGEIIADKW--EPLLNNLGHVNRKLKKYEEALEF 65 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~ 65 (90)
+|.+|...|+.-+|+++|.+|..-..+. +++...+.| ...|...=.++.+.+-.+.+.+.
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5778999999999999999987643332 111222333 22233334556667777888888
Q ss_pred HHHHHhhCC
Q psy8498 66 HKQALVVAP 74 (90)
Q Consensus 66 ~~~al~~~~ 74 (90)
...|++.-|
T Consensus 1006 A~~AIe~l~ 1014 (1480)
T KOG4521|consen 1006 AVKAIENLP 1014 (1480)
T ss_pred HHHHHHhCC
Confidence 888886544
No 495
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=32.77 E-value=1.5e+02 Score=19.60 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=20.6
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++..|......+++.+|+..++.|...
T Consensus 247 ~y~~a~~~~~~~k~GeaIa~L~~A~~~ 273 (348)
T cd09242 247 AYYHALALEAAGKYGEAIAYLTQAESI 273 (348)
T ss_pred HHHHHHHhHHhccHHHHHHHHHHHHHH
Confidence 345566677788899999999988753
No 496
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=31.88 E-value=2.4e+02 Score=21.65 Aligned_cols=68 Identities=18% Similarity=0.022 Sum_probs=46.8
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 8 LSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 8 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
-...-..++++|..+..++-.-.+...........+...---|.+....|++++|.+..+.+++.-|+
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 34556789999999988887776664322222222222233477788899999999999999987663
No 497
>PRK11619 lytic murein transglycosylase; Provisional
Probab=31.70 E-value=2.1e+02 Score=20.91 Aligned_cols=26 Identities=15% Similarity=-0.008 Sum_probs=23.1
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
.+.+|.++..+|+.++|..+|+++..
T Consensus 349 ~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 349 RYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 47799999999999999999999754
No 498
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=31.70 E-value=13 Score=23.73 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=22.2
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKV 30 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~ 30 (90)
.+|.++.+.++.++|.++|++.+-..
T Consensus 168 ~IGHvHL~v~~l~eA~~fY~~~LG~~ 193 (265)
T COG2514 168 IIGHVHLKVADLEEAEQFYEDVLGLE 193 (265)
T ss_pred EEeEEEEEeCCHHHHHHHHHHhcCCe
Confidence 46788999999999999999987543
No 499
>KOG2422|consensus
Probab=31.30 E-value=2.1e+02 Score=20.91 Aligned_cols=79 Identities=14% Similarity=-0.020 Sum_probs=54.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC---------------cchhhHHHHHHhHHHHHHHhcCHHHHHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE---------------IIADKWEPLLNNLGHVNRKLKKYEEALEFH 66 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 66 (90)
++..++.++..+||.+-|-.+.++++=.....-.. ......-.+++..=..+.+.|=+..|.++.
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c 365 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 35678899999999999999999988655543110 000011112344445566789999999999
Q ss_pred HHHHhhCCC-ChHHH
Q psy8498 67 KQALVVAPM-KASTF 80 (90)
Q Consensus 67 ~~al~~~~~-~~~~~ 80 (90)
+-.++++|. +|-+.
T Consensus 366 KlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGI 380 (665)
T ss_pred HHHhhcCCcCCchhH
Confidence 999999996 66543
No 500
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=30.72 E-value=1.1e+02 Score=20.74 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHhcC---------HHHHHHHHHHH
Q psy8498 43 EPLLNNLGHVNRKLKK---------YEEALEFHKQA 69 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~---------~~~A~~~~~~a 69 (90)
..+++|+|.++...|- ...|..+|++|
T Consensus 106 asVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~A 141 (384)
T cd09248 106 GSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRA 141 (384)
T ss_pred HHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Done!