Query psy8498
Match_columns 90
No_of_seqs 100 out of 1768
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 20:28:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.7 2.6E-17 8.8E-22 90.4 9.9 78 3-89 16-93 (126)
2 3gyz_A Chaperone protein IPGC; 99.7 2.8E-17 9.4E-22 93.1 9.6 79 2-89 38-116 (151)
3 4ga2_A E3 SUMO-protein ligase 99.7 1.5E-16 5E-21 89.5 10.3 78 2-88 33-110 (150)
4 4gco_A Protein STI-1; structur 99.7 2.5E-16 8.6E-21 86.4 9.3 77 2-87 49-125 (126)
5 4gcn_A Protein STI-1; structur 99.7 7.2E-17 2.5E-21 88.6 6.2 78 2-88 10-94 (127)
6 3upv_A Heat shock protein STI1 99.7 2E-15 6.8E-20 81.9 10.1 78 3-89 7-84 (126)
7 2vgx_A Chaperone SYCD; alterna 99.6 2.3E-15 7.7E-20 84.5 9.7 78 3-89 24-101 (148)
8 2hr2_A Hypothetical protein; a 99.6 3.8E-15 1.3E-19 85.0 10.2 88 3-90 14-115 (159)
9 1na3_A Designed protein CTPR2; 99.6 6.2E-15 2.1E-19 75.4 9.7 77 3-88 12-88 (91)
10 2l6j_A TPR repeat-containing p 99.6 4.7E-15 1.6E-19 78.3 9.5 78 2-88 6-89 (111)
11 3rkv_A Putative peptidylprolyl 99.6 9.9E-15 3.4E-19 82.3 11.2 87 3-89 14-109 (162)
12 2xcb_A PCRH, regulatory protei 99.6 5.2E-15 1.8E-19 82.1 9.7 78 3-89 21-98 (142)
13 3sz7_A HSC70 cochaperone (SGT) 99.6 5.9E-15 2E-19 83.3 10.0 78 3-89 14-91 (164)
14 4gyw_A UDP-N-acetylglucosamine 99.6 2.7E-15 9.1E-20 101.9 9.6 78 2-88 11-88 (723)
15 1hxi_A PEX5, peroxisome target 99.6 1.1E-14 3.9E-19 79.2 10.3 77 3-88 20-96 (121)
16 3urz_A Uncharacterized protein 99.6 8.9E-15 3E-19 85.8 9.9 75 5-88 59-133 (208)
17 3q49_B STIP1 homology and U bo 99.6 3.3E-14 1.1E-18 77.5 9.9 78 3-89 12-89 (137)
18 4gyw_A UDP-N-acetylglucosamine 99.6 2E-14 6.9E-19 97.7 9.9 77 3-88 46-122 (723)
19 4ga2_A E3 SUMO-protein ligase 99.6 3.2E-15 1.1E-19 83.9 4.9 76 5-89 2-77 (150)
20 4gcn_A Protein STI-1; structur 99.6 1.6E-13 5.4E-18 75.1 11.4 80 2-84 44-123 (127)
21 2v5f_A Prolyl 4-hydroxylase su 99.6 1.3E-13 4.6E-18 73.3 10.8 83 3-87 8-90 (104)
22 2kck_A TPR repeat; tetratricop 99.6 8.9E-14 3E-18 72.9 9.5 79 2-89 8-88 (112)
23 3upv_A Heat shock protein STI1 99.5 5.9E-14 2E-18 76.0 8.7 79 2-89 40-124 (126)
24 3rkv_A Putative peptidylprolyl 99.5 5.5E-14 1.9E-18 79.2 8.8 77 2-87 65-142 (162)
25 3sz7_A HSC70 cochaperone (SGT) 99.5 4.9E-14 1.7E-18 79.5 8.5 77 2-87 47-123 (164)
26 3vtx_A MAMA; tetratricopeptide 99.5 1.3E-13 4.4E-18 78.6 10.1 78 2-88 7-84 (184)
27 2kc7_A BFR218_protein; tetratr 99.5 2.1E-13 7E-18 71.0 9.9 71 1-80 1-72 (99)
28 2hr2_A Hypothetical protein; a 99.5 1.7E-14 5.7E-19 82.4 5.6 77 2-83 59-142 (159)
29 2pl2_A Hypothetical conserved 99.5 1.2E-13 4E-18 81.4 9.3 78 3-89 42-130 (217)
30 3urz_A Uncharacterized protein 99.5 3.3E-13 1.1E-17 79.0 10.7 77 3-88 7-99 (208)
31 3k9i_A BH0479 protein; putativ 99.5 1.8E-13 6.1E-18 73.6 8.8 71 2-81 29-99 (117)
32 3gyz_A Chaperone protein IPGC; 99.5 4.9E-14 1.7E-18 79.7 6.7 67 2-77 72-138 (151)
33 1p5q_A FKBP52, FK506-binding p 99.5 1.3E-13 4.4E-18 86.2 9.2 78 2-88 198-275 (336)
34 2vgx_A Chaperone SYCD; alterna 99.5 1.2E-13 3.9E-18 77.5 8.0 70 3-81 58-127 (148)
35 1elw_A TPR1-domain of HOP; HOP 99.5 4.4E-13 1.5E-17 70.7 9.9 77 3-88 7-83 (118)
36 2pl2_A Hypothetical conserved 99.5 1.3E-13 4.5E-18 81.2 8.5 77 3-88 8-84 (217)
37 2xev_A YBGF; tetratricopeptide 99.5 5.2E-13 1.8E-17 72.1 9.9 82 2-89 4-88 (129)
38 2xcb_A PCRH, regulatory protei 99.5 1.2E-13 4.1E-18 76.5 7.4 75 3-86 55-129 (142)
39 1zu2_A Mitochondrial import re 99.5 1E-13 3.4E-18 79.1 7.1 75 2-85 38-133 (158)
40 3u3w_A Transcriptional activat 99.5 3.5E-13 1.2E-17 82.3 9.8 86 2-89 157-248 (293)
41 2fbn_A 70 kDa peptidylprolyl i 99.5 3.4E-13 1.2E-17 78.1 9.2 77 3-88 91-167 (198)
42 2lni_A Stress-induced-phosphop 99.5 4.2E-13 1.4E-17 72.3 8.9 77 3-88 53-129 (133)
43 1a17_A Serine/threonine protei 99.5 7.3E-13 2.5E-17 73.8 10.0 77 3-88 16-92 (166)
44 2lni_A Stress-induced-phosphop 99.5 2E-13 7E-18 73.5 7.4 79 2-89 18-96 (133)
45 2vyi_A SGTA protein; chaperone 99.5 6.3E-13 2.1E-17 71.1 9.2 76 4-88 50-125 (131)
46 3ma5_A Tetratricopeptide repea 99.5 4E-13 1.4E-17 70.7 8.1 64 3-75 10-73 (100)
47 4i17_A Hypothetical protein; T 99.5 5.4E-13 1.8E-17 78.4 9.5 78 3-89 10-88 (228)
48 1p5q_A FKBP52, FK506-binding p 99.5 3.9E-13 1.3E-17 84.0 9.3 87 3-89 150-242 (336)
49 2h6f_A Protein farnesyltransfe 99.5 1.1E-13 3.9E-18 88.1 6.5 76 3-87 134-210 (382)
50 1elw_A TPR1-domain of HOP; HOP 99.5 1.3E-12 4.4E-17 68.8 9.7 76 3-87 41-116 (118)
51 1hh8_A P67PHOX, NCF-2, neutrop 99.5 8.5E-13 2.9E-17 76.6 9.6 77 3-88 40-132 (213)
52 4i17_A Hypothetical protein; T 99.5 4.2E-13 1.4E-17 78.9 8.2 84 3-88 79-164 (228)
53 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-12 4.2E-17 74.6 9.9 42 47-88 111-152 (184)
54 2h6f_A Protein farnesyltransfe 99.5 2.2E-13 7.7E-18 86.8 7.4 75 4-87 101-176 (382)
55 2vyi_A SGTA protein; chaperone 99.5 2E-12 6.7E-17 69.1 10.1 78 3-89 15-92 (131)
56 2c2l_A CHIP, carboxy terminus 99.5 7E-13 2.4E-17 81.0 9.1 78 3-89 7-84 (281)
57 2fbn_A 70 kDa peptidylprolyl i 99.4 7E-13 2.4E-17 76.8 8.6 87 3-89 41-134 (198)
58 1qqe_A Vesicular transport pro 99.4 8.7E-13 3E-17 80.7 9.4 85 2-89 79-170 (292)
59 1na0_A Designed protein CTPR3; 99.4 2.3E-12 7.8E-17 68.4 9.9 41 47-87 81-121 (125)
60 1na0_A Designed protein CTPR3; 99.4 2.3E-12 7.7E-17 68.4 9.9 78 3-89 12-89 (125)
61 1elr_A TPR2A-domain of HOP; HO 99.4 7.7E-13 2.6E-17 70.9 8.0 78 3-89 7-91 (131)
62 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 4.5E-13 1.6E-17 86.7 8.3 78 2-88 319-396 (457)
63 1ihg_A Cyclophilin 40; ppiase 99.4 1.9E-12 6.6E-17 82.0 10.9 87 3-89 226-319 (370)
64 3k9i_A BH0479 protein; putativ 99.4 2.4E-13 8.3E-18 73.0 5.8 68 12-88 2-72 (117)
65 1qqe_A Vesicular transport pro 99.4 2.7E-12 9.3E-17 78.5 10.9 84 2-88 119-210 (292)
66 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1.1E-12 3.8E-17 84.9 9.6 87 3-89 271-363 (457)
67 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.8E-12 6.1E-17 77.3 9.3 78 3-89 46-123 (275)
68 2dba_A Smooth muscle cell asso 99.4 3.4E-12 1.2E-16 69.9 9.7 74 4-86 69-142 (148)
69 1hxi_A PEX5, peroxisome target 99.4 6.9E-13 2.4E-17 72.0 6.7 66 3-77 54-119 (121)
70 2qfc_A PLCR protein; TPR, HTH, 99.4 2.1E-12 7E-17 78.9 9.4 86 2-89 157-248 (293)
71 1elr_A TPR2A-domain of HOP; HO 99.4 8.9E-12 3.1E-16 66.6 10.8 83 3-88 41-123 (131)
72 4g1t_A Interferon-induced prot 99.4 4.2E-12 1.4E-16 81.0 11.1 85 3-87 54-146 (472)
73 1a17_A Serine/threonine protei 99.4 3E-12 1E-16 71.3 9.2 75 3-86 50-124 (166)
74 4eqf_A PEX5-related protein; a 99.4 2.7E-12 9.4E-17 79.6 9.8 77 3-88 216-292 (365)
75 3ulq_A Response regulator aspa 99.4 3.8E-12 1.3E-16 79.8 10.4 85 2-89 186-276 (383)
76 3uq3_A Heat shock protein STI1 99.4 4.4E-12 1.5E-16 74.7 9.9 78 3-89 142-219 (258)
77 2e2e_A Formate-dependent nitri 99.4 4E-12 1.4E-16 72.2 9.3 77 3-88 47-126 (177)
78 1ihg_A Cyclophilin 40; ppiase 99.4 1.8E-12 6.2E-17 82.2 8.2 78 2-88 275-352 (370)
79 3q15_A PSP28, response regulat 99.4 4.7E-12 1.6E-16 79.5 10.0 84 3-89 185-273 (378)
80 2dba_A Smooth muscle cell asso 99.4 3.6E-12 1.2E-16 69.8 8.4 80 3-88 31-110 (148)
81 4eqf_A PEX5-related protein; a 99.4 6.2E-12 2.1E-16 78.0 10.2 78 3-89 68-145 (365)
82 2kat_A Uncharacterized protein 99.4 3.8E-12 1.3E-16 67.9 7.9 64 3-75 22-85 (115)
83 2if4_A ATFKBP42; FKBP-like, al 99.4 1.8E-12 6.2E-17 81.1 7.4 87 3-89 182-276 (338)
84 3hym_B Cell division cycle pro 99.4 7.1E-12 2.4E-16 76.1 9.6 86 3-88 196-281 (330)
85 2xev_A YBGF; tetratricopeptide 99.4 1.6E-11 5.4E-16 66.1 10.0 77 3-85 42-118 (129)
86 3u4t_A TPR repeat-containing p 99.4 3E-12 1E-16 76.4 7.4 78 4-87 41-118 (272)
87 1wao_1 Serine/threonine protei 99.4 1.3E-12 4.5E-17 85.1 6.2 74 4-86 44-117 (477)
88 2pzi_A Probable serine/threoni 99.4 5.9E-12 2E-16 84.9 9.5 77 3-88 436-512 (681)
89 2fo7_A Synthetic consensus TPR 99.4 2.1E-11 7.2E-16 65.1 10.0 76 3-87 4-79 (136)
90 3q49_B STIP1 homology and U bo 99.4 5.6E-12 1.9E-16 68.5 7.7 75 3-86 46-125 (137)
91 1zu2_A Mitochondrial import re 99.3 2.1E-12 7E-17 73.6 6.0 71 10-89 12-92 (158)
92 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.1E-11 3.7E-16 73.2 9.3 80 3-88 7-89 (225)
93 1fch_A Peroxisomal targeting s 99.3 1.2E-11 4.2E-16 76.4 9.7 77 3-88 220-296 (368)
94 2if4_A ATFKBP42; FKBP-like, al 99.3 1.4E-12 4.7E-17 81.6 5.3 76 2-86 232-307 (338)
95 4g1t_A Interferon-induced prot 99.3 1.6E-11 5.4E-16 78.3 10.3 84 3-87 97-182 (472)
96 2fo7_A Synthetic consensus TPR 99.3 2.3E-11 7.8E-16 65.0 9.5 77 3-88 38-114 (136)
97 2vsy_A XCC0866; transferase, g 99.3 1.4E-11 4.9E-16 81.0 9.9 75 4-87 61-135 (568)
98 1w3b_A UDP-N-acetylglucosamine 99.3 3.5E-12 1.2E-16 79.8 6.7 86 3-88 274-384 (388)
99 2vsy_A XCC0866; transferase, g 99.3 9E-12 3.1E-16 81.9 8.9 78 3-89 26-103 (568)
100 1wao_1 Serine/threonine protei 99.3 8.7E-12 3E-16 81.2 8.7 79 2-89 8-86 (477)
101 1fch_A Peroxisomal targeting s 99.3 1.7E-11 5.7E-16 75.8 9.5 78 3-89 67-144 (368)
102 3hym_B Cell division cycle pro 99.3 6.9E-12 2.4E-16 76.2 7.7 77 3-88 239-315 (330)
103 3as5_A MAMA; tetratricopeptide 99.3 3.5E-11 1.2E-15 67.5 10.1 74 5-87 81-154 (186)
104 3n71_A Histone lysine methyltr 99.3 1.3E-11 4.4E-16 81.0 9.2 85 2-87 353-445 (490)
105 4abn_A Tetratricopeptide repea 99.3 8.3E-12 2.9E-16 81.0 8.2 78 2-88 215-303 (474)
106 3mkr_A Coatomer subunit epsilo 99.3 1.6E-11 5.5E-16 75.4 9.0 47 43-89 200-246 (291)
107 3qww_A SET and MYND domain-con 99.3 1.7E-11 5.8E-16 79.4 9.5 77 2-79 342-423 (433)
108 3u4t_A TPR repeat-containing p 99.3 2E-11 6.7E-16 72.8 9.1 77 3-88 77-154 (272)
109 3ro3_A PINS homolog, G-protein 99.3 3.2E-11 1.1E-15 66.3 9.3 83 3-88 12-100 (164)
110 3qwp_A SET and MYND domain-con 99.3 1.7E-11 5.8E-16 79.2 9.4 86 2-88 331-424 (429)
111 1w3b_A UDP-N-acetylglucosamine 99.3 1.8E-11 6E-16 76.6 9.2 76 4-88 241-316 (388)
112 2vq2_A PILW, putative fimbrial 99.3 3.7E-11 1.3E-15 69.4 10.0 77 3-88 11-87 (225)
113 3as5_A MAMA; tetratricopeptide 99.3 4.2E-11 1.4E-15 67.2 9.9 77 3-88 45-121 (186)
114 2ifu_A Gamma-SNAP; membrane fu 99.3 1.3E-11 4.4E-16 75.9 8.3 81 3-87 119-205 (307)
115 3ulq_A Response regulator aspa 99.3 2.2E-11 7.7E-16 76.3 9.4 85 3-89 146-236 (383)
116 2ifu_A Gamma-SNAP; membrane fu 99.3 6.6E-12 2.3E-16 77.2 6.8 84 2-89 78-167 (307)
117 2pzi_A Probable serine/threoni 99.3 3.2E-12 1.1E-16 86.2 5.7 77 2-88 469-545 (681)
118 3uq3_A Heat shock protein STI1 99.3 4E-11 1.4E-15 70.6 9.8 87 3-89 82-185 (258)
119 3ieg_A DNAJ homolog subfamily 99.3 3.2E-11 1.1E-15 73.8 9.4 76 4-88 276-351 (359)
120 3qky_A Outer membrane assembly 99.3 2.5E-11 8.5E-16 72.7 8.7 72 3-80 55-134 (261)
121 3ieg_A DNAJ homolog subfamily 99.3 4.6E-11 1.6E-15 73.1 9.9 77 3-88 6-82 (359)
122 3fp2_A TPR repeat-containing p 99.3 9.4E-12 3.2E-16 80.2 7.0 77 3-88 28-104 (537)
123 4abn_A Tetratricopeptide repea 99.3 1.2E-11 4E-16 80.3 7.3 79 2-89 172-270 (474)
124 2q7f_A YRRB protein; TPR, prot 99.3 7.1E-11 2.4E-15 69.2 9.9 75 4-87 61-135 (243)
125 3cv0_A Peroxisome targeting si 99.3 6.7E-11 2.3E-15 71.7 9.9 78 3-89 175-252 (327)
126 1hh8_A P67PHOX, NCF-2, neutrop 99.3 2.8E-11 9.6E-16 70.1 7.9 75 3-89 9-83 (213)
127 2q7f_A YRRB protein; TPR, prot 99.3 6.6E-11 2.3E-15 69.3 9.4 73 5-86 96-168 (243)
128 2xpi_A Anaphase-promoting comp 99.3 3.4E-11 1.2E-15 78.6 8.9 77 3-88 519-595 (597)
129 2xpi_A Anaphase-promoting comp 99.3 1.6E-10 5.4E-15 75.5 11.7 85 3-89 478-562 (597)
130 3edt_B KLC 2, kinesin light ch 99.3 5.5E-11 1.9E-15 70.6 8.8 86 2-88 87-180 (283)
131 3qky_A Outer membrane assembly 99.3 3.1E-11 1.1E-15 72.2 7.6 80 3-88 18-100 (261)
132 2y4t_A DNAJ homolog subfamily 99.2 9.1E-11 3.1E-15 74.3 9.9 78 3-89 29-106 (450)
133 3edt_B KLC 2, kinesin light ch 99.2 8.1E-11 2.8E-15 69.9 9.1 87 2-89 45-139 (283)
134 3gw4_A Uncharacterized protein 99.2 1.2E-10 4E-15 66.7 9.5 84 2-88 28-118 (203)
135 2gw1_A Mitochondrial precursor 99.2 8.4E-11 2.9E-15 75.2 9.7 78 2-89 8-85 (514)
136 3cv0_A Peroxisome targeting si 99.2 6.3E-11 2.2E-15 71.8 8.7 78 3-89 209-298 (327)
137 3ro3_A PINS homolog, G-protein 99.2 1.2E-10 4.2E-15 63.9 9.2 84 2-88 51-140 (164)
138 2ho1_A Type 4 fimbrial biogene 99.2 6.2E-11 2.1E-15 70.0 8.3 75 4-87 41-115 (252)
139 1xnf_A Lipoprotein NLPI; TPR, 99.2 1.1E-10 3.6E-15 69.5 9.3 73 3-84 80-152 (275)
140 2y4t_A DNAJ homolog subfamily 99.2 1.1E-10 3.7E-15 73.9 9.2 75 3-86 298-372 (450)
141 3gw4_A Uncharacterized protein 99.2 2E-10 6.8E-15 65.8 9.3 85 2-88 68-158 (203)
142 2ho1_A Type 4 fimbrial biogene 99.2 2.1E-10 7.2E-15 67.7 9.4 75 4-87 109-185 (252)
143 2vq2_A PILW, putative fimbrial 99.2 2.1E-10 7.3E-15 66.2 9.2 77 4-87 80-157 (225)
144 3q15_A PSP28, response regulat 99.2 1.8E-10 6.2E-15 72.2 9.2 84 3-88 144-233 (378)
145 2kck_A TPR repeat; tetratricop 99.2 3.3E-11 1.1E-15 62.9 4.9 66 3-77 43-111 (112)
146 3sf4_A G-protein-signaling mod 99.2 2.9E-10 9.9E-15 70.7 9.1 83 3-88 190-278 (406)
147 3fp2_A TPR repeat-containing p 99.1 3.1E-10 1.1E-14 73.1 9.0 77 3-88 313-389 (537)
148 2r5s_A Uncharacterized protein 99.1 1.3E-10 4.6E-15 66.1 6.5 70 3-82 9-78 (176)
149 2e2e_A Formate-dependent nitri 99.1 4.5E-10 1.5E-14 63.6 8.6 69 3-80 81-152 (177)
150 3mkr_A Coatomer subunit epsilo 99.1 2.7E-10 9.1E-15 69.9 7.9 69 3-80 203-272 (291)
151 2kat_A Uncharacterized protein 99.1 1E-10 3.5E-15 62.3 5.2 63 17-88 2-64 (115)
152 3u3w_A Transcriptional activat 99.1 6.2E-10 2.1E-14 67.8 9.2 69 2-73 198-267 (293)
153 3nf1_A KLC 1, kinesin light ch 99.1 5.8E-10 2E-14 67.2 8.8 85 3-88 114-206 (311)
154 2c2l_A CHIP, carboxy terminus 99.1 4.5E-11 1.6E-15 72.9 3.5 65 3-76 41-105 (281)
155 3sf4_A G-protein-signaling mod 99.1 8.9E-10 3E-14 68.5 9.2 84 2-88 229-318 (406)
156 3ro2_A PINS homolog, G-protein 99.1 1.1E-09 3.7E-14 66.2 9.3 83 3-88 186-274 (338)
157 4a1s_A PINS, partner of inscut 99.1 8.2E-10 2.8E-14 69.2 8.8 83 3-88 89-177 (411)
158 4a1s_A PINS, partner of inscut 99.1 4.2E-10 1.4E-14 70.6 7.4 82 3-89 51-138 (411)
159 3nf1_A KLC 1, kinesin light ch 99.1 1.4E-09 4.9E-14 65.4 9.5 87 2-89 29-123 (311)
160 2qfc_A PLCR protein; TPR, HTH, 99.1 1.1E-09 3.9E-14 66.7 9.1 83 4-89 119-208 (293)
161 3ro2_A PINS homolog, G-protein 99.1 1.4E-09 5E-14 65.6 8.7 83 3-88 46-134 (338)
162 2gw1_A Mitochondrial precursor 99.1 1.1E-09 3.9E-14 69.9 8.6 84 3-89 375-461 (514)
163 3n71_A Histone lysine methyltr 99.1 1.7E-09 6E-14 71.0 9.5 81 7-88 316-404 (490)
164 1ouv_A Conserved hypothetical 99.1 2.6E-09 9E-14 64.0 9.6 72 3-87 9-84 (273)
165 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.4E-09 8.1E-14 63.1 8.8 72 3-80 44-133 (225)
166 3rjv_A Putative SEL1 repeat pr 99.0 1.2E-09 4.2E-14 64.0 7.3 78 3-88 88-173 (212)
167 3qww_A SET and MYND domain-con 99.0 1.9E-09 6.4E-14 69.9 8.4 77 11-88 309-393 (433)
168 1pc2_A Mitochondria fission pr 99.0 8.5E-09 2.9E-13 58.3 9.5 71 4-82 36-110 (152)
169 3qou_A Protein YBBN; thioredox 99.0 2E-09 6.8E-14 65.8 7.3 60 3-71 120-179 (287)
170 3qou_A Protein YBBN; thioredox 99.0 2.4E-09 8.3E-14 65.4 7.6 86 3-88 154-266 (287)
171 1hz4_A MALT regulatory protein 99.0 7.2E-09 2.5E-13 64.5 9.5 83 3-88 56-146 (373)
172 1hz4_A MALT regulatory protein 98.9 3E-08 1E-12 61.7 11.5 84 3-87 96-184 (373)
173 1ouv_A Conserved hypothetical 98.9 1.2E-08 4E-13 61.2 9.3 72 3-87 41-120 (273)
174 3bee_A Putative YFRE protein; 98.9 1.9E-08 6.3E-13 52.5 8.4 65 3-76 9-76 (93)
175 3rjv_A Putative SEL1 repeat pr 98.9 6.3E-09 2.1E-13 61.0 7.2 71 3-87 21-95 (212)
176 2ond_A Cleavage stimulation fa 98.9 6.9E-09 2.4E-13 63.6 7.1 76 3-86 102-177 (308)
177 2r5s_A Uncharacterized protein 98.9 1E-08 3.5E-13 58.2 7.0 86 3-88 43-155 (176)
178 2ond_A Cleavage stimulation fa 98.9 1.7E-08 5.9E-13 61.9 8.2 76 3-87 53-144 (308)
179 3ma5_A Tetratricopeptide repea 98.8 2.2E-08 7.6E-13 52.2 6.7 47 43-89 7-53 (100)
180 3qwp_A SET and MYND domain-con 98.8 2.1E-08 7E-13 64.9 7.4 80 9-89 296-383 (429)
181 4f3v_A ESX-1 secretion system 98.8 6.3E-08 2.2E-12 59.7 8.2 75 3-84 174-248 (282)
182 1klx_A Cysteine rich protein B 98.7 1.4E-07 4.9E-12 52.0 8.7 70 6-88 31-104 (138)
183 1klx_A Cysteine rich protein B 98.7 1.5E-07 5E-12 51.9 8.4 70 2-84 59-136 (138)
184 2l6j_A TPR repeat-containing p 98.7 1.1E-07 3.9E-12 49.4 6.4 46 44-89 5-50 (111)
185 3e4b_A ALGK; tetratricopeptide 98.6 1.1E-07 3.8E-12 61.4 6.2 72 3-86 179-257 (452)
186 4b4t_Q 26S proteasome regulato 98.6 2.6E-07 9E-12 58.3 7.7 69 3-74 138-206 (434)
187 2xm6_A Protein corresponding t 98.5 1.1E-07 3.8E-12 61.5 5.1 73 3-86 366-449 (490)
188 1na3_A Designed protein CTPR2; 98.5 6E-07 2E-11 45.0 6.9 47 43-89 9-55 (91)
189 1dce_A Protein (RAB geranylger 98.5 5.7E-07 1.9E-11 60.0 8.3 77 3-88 66-154 (567)
190 4f3v_A ESX-1 secretion system 98.5 3E-07 1E-11 56.7 6.4 79 4-89 139-220 (282)
191 2xm6_A Protein corresponding t 98.5 1E-06 3.4E-11 57.0 8.8 72 4-88 332-410 (490)
192 3e4b_A ALGK; tetratricopeptide 98.5 7.1E-07 2.4E-11 57.7 8.0 69 4-87 252-328 (452)
193 4b4t_Q 26S proteasome regulato 98.5 1.6E-06 5.5E-11 54.7 9.4 86 3-88 58-186 (434)
194 1dce_A Protein (RAB geranylger 98.5 6.3E-07 2.1E-11 59.8 7.1 77 3-88 110-189 (567)
195 1b89_A Protein (clathrin heavy 98.4 1.9E-06 6.6E-11 56.2 8.7 87 2-89 150-253 (449)
196 1nzn_A CGI-135 protein, fissio 98.4 2.8E-06 9.6E-11 46.6 7.6 70 4-81 39-112 (126)
197 3ffl_A Anaphase-promoting comp 98.4 1.7E-05 5.9E-10 45.3 11.1 70 3-72 23-92 (167)
198 2ooe_A Cleavage stimulation fa 98.4 1.5E-06 5E-11 56.8 7.6 76 3-87 275-366 (530)
199 2ooe_A Cleavage stimulation fa 98.4 1.8E-06 6.1E-11 56.4 7.9 71 3-81 324-394 (530)
200 3dra_A Protein farnesyltransfe 98.4 3.4E-06 1.2E-10 52.5 8.6 77 3-88 70-155 (306)
201 3ly7_A Transcriptional activat 98.3 4.1E-06 1.4E-10 53.5 8.4 64 5-78 282-345 (372)
202 3dra_A Protein farnesyltransfe 98.3 3.1E-06 1.1E-10 52.7 7.8 77 3-88 147-231 (306)
203 3u64_A Protein TP_0956; tetrat 98.3 8.1E-07 2.8E-11 55.1 5.0 66 2-75 201-272 (301)
204 3dss_A Geranylgeranyl transfer 98.3 7.8E-06 2.7E-10 51.5 8.7 77 3-88 111-190 (331)
205 2kc7_A BFR218_protein; tetratr 98.2 5E-06 1.7E-10 42.4 6.1 42 47-88 4-46 (99)
206 3u64_A Protein TP_0956; tetrat 98.2 5.1E-06 1.7E-10 51.6 6.9 68 14-88 177-250 (301)
207 3dss_A Geranylgeranyl transfer 98.2 1.3E-05 4.6E-10 50.4 8.8 75 3-86 147-236 (331)
208 1xi4_A Clathrin heavy chain; a 98.2 7.6E-06 2.6E-10 59.8 7.7 73 2-89 1107-1179(1630)
209 3o48_A Mitochondria fission 1 98.1 3.1E-05 1.1E-09 42.8 7.8 69 5-81 45-116 (134)
210 3q7a_A Farnesyltransferase alp 98.1 1.1E-05 3.9E-10 51.1 6.7 69 9-86 63-132 (349)
211 3q7a_A Farnesyltransferase alp 98.1 2.5E-05 8.7E-10 49.5 8.2 77 3-88 91-170 (349)
212 1xi4_A Clathrin heavy chain; a 98.1 2.4E-05 8.2E-10 57.3 8.5 86 3-88 1224-1325(1630)
213 3ffl_A Anaphase-promoting comp 98.1 5.1E-05 1.7E-09 43.4 8.2 83 3-87 66-165 (167)
214 3mv2_B Coatomer subunit epsilo 98.0 1.8E-05 6.3E-10 49.4 6.7 64 4-74 104-167 (310)
215 1b89_A Protein (clathrin heavy 98.0 1.2E-05 4E-10 52.6 5.4 62 2-85 124-185 (449)
216 1y8m_A FIS1; mitochondria, unk 97.9 0.00046 1.6E-08 38.6 9.5 68 5-80 44-114 (144)
217 1ya0_A SMG-7 transcript varian 97.8 0.00032 1.1E-08 46.4 9.1 76 3-87 155-230 (497)
218 3bee_A Putative YFRE protein; 97.6 0.00031 1.1E-08 36.2 6.0 46 43-88 6-54 (93)
219 3mv2_B Coatomer subunit epsilo 97.6 0.00038 1.3E-08 43.5 7.1 70 9-80 220-290 (310)
220 2v5f_A Prolyl 4-hydroxylase su 97.6 0.00046 1.6E-08 35.9 6.4 45 45-89 7-58 (104)
221 3ly7_A Transcriptional activat 97.3 0.004 1.4E-07 39.9 9.7 74 14-88 213-321 (372)
222 1pc2_A Mitochondria fission pr 97.2 0.00077 2.6E-08 38.0 5.0 47 43-89 32-83 (152)
223 4gns_B Protein CSD3, chitin bi 97.0 0.0015 5.2E-08 45.2 5.8 54 7-69 344-397 (754)
224 1ya0_A SMG-7 transcript varian 96.7 0.0063 2.2E-07 40.3 6.3 44 45-88 154-197 (497)
225 2ff4_A Probable regulatory pro 96.4 0.017 5.9E-07 36.9 7.1 59 4-71 175-233 (388)
226 4gns_B Protein CSD3, chitin bi 96.4 0.062 2.1E-06 37.5 10.0 46 45-90 339-384 (754)
227 3txn_A 26S proteasome regulato 96.3 0.083 2.8E-06 34.1 9.7 66 5-73 104-169 (394)
228 4h7y_A Dual specificity protei 96.0 0.032 1.1E-06 31.6 5.9 58 11-77 71-128 (161)
229 1nzn_A CGI-135 protein, fissio 95.8 0.0096 3.3E-07 32.5 3.2 31 3-33 77-107 (126)
230 4b4t_S RPN3, 26S proteasome re 95.7 0.022 7.5E-07 38.1 5.0 70 4-77 235-304 (523)
231 4b4t_R RPN7, 26S proteasome re 95.6 0.097 3.3E-06 33.9 7.8 65 2-72 133-197 (429)
232 4g26_A Pentatricopeptide repea 95.6 0.18 6.2E-06 33.3 9.2 61 3-71 108-168 (501)
233 4h7y_A Dual specificity protei 95.5 0.13 4.4E-06 29.2 7.1 71 8-80 21-97 (161)
234 3mkq_A Coatomer beta'-subunit; 95.4 0.098 3.4E-06 35.4 7.5 68 3-70 684-763 (814)
235 2uy1_A Cleavage stimulation fa 95.3 0.12 4.2E-06 33.9 7.6 56 17-82 196-251 (493)
236 4e6h_A MRNA 3'-END-processing 95.2 0.12 4.1E-06 35.5 7.5 52 14-74 484-535 (679)
237 3spa_A Mtrpol, DNA-directed RN 95.2 0.4 1.4E-05 35.0 10.1 75 3-84 130-207 (1134)
238 1zbp_A Hypothetical protein VP 95.0 0.22 7.4E-06 30.7 7.6 60 9-77 6-65 (273)
239 4e6h_A MRNA 3'-END-processing 95.0 0.51 1.8E-05 32.5 10.2 80 5-84 383-476 (679)
240 3kae_A CDC27, possible protein 94.9 0.25 8.5E-06 28.9 7.1 68 7-74 69-145 (242)
241 3mkq_B Coatomer subunit alpha; 94.8 0.16 5.5E-06 29.3 6.3 68 3-70 37-116 (177)
242 4g26_A Pentatricopeptide repea 94.7 0.25 8.6E-06 32.6 7.7 62 3-72 143-204 (501)
243 2npm_A 14-3-3 domain containin 94.3 0.39 1.3E-05 29.4 7.5 53 17-71 173-226 (260)
244 2o8p_A 14-3-3 domain containin 94.2 0.48 1.6E-05 28.4 8.4 59 13-72 138-197 (227)
245 3o48_A Mitochondria fission 1 94.0 0.034 1.2E-06 30.7 2.2 30 4-33 82-111 (134)
246 4fhn_B Nucleoporin NUP120; pro 93.9 0.22 7.4E-06 36.1 6.6 69 6-74 848-930 (1139)
247 1y8m_A FIS1; mitochondria, unk 93.5 0.048 1.6E-06 30.4 2.2 30 4-33 81-110 (144)
248 2w2u_A Hypothetical P60 katani 93.5 0.18 6E-06 25.4 4.2 29 4-32 23-51 (83)
249 2rpa_A Katanin P60 ATPase-cont 93.4 0.16 5.4E-06 25.4 3.9 29 5-33 17-45 (78)
250 3mkq_B Coatomer subunit alpha; 93.3 0.23 7.9E-06 28.6 5.0 46 11-70 16-61 (177)
251 2crb_A Nuclear receptor bindin 93.3 0.27 9.2E-06 25.4 4.6 29 43-71 15-43 (97)
252 2v6y_A AAA family ATPase, P60 93.1 0.22 7.4E-06 25.0 4.2 29 4-32 15-43 (83)
253 4b4t_P 26S proteasome regulato 92.9 1.2 4.3E-05 28.9 9.6 65 6-72 183-247 (445)
254 3re2_A Predicted protein; meni 92.7 0.48 1.6E-05 30.7 6.1 49 19-71 276-324 (472)
255 4gq2_M Nucleoporin NUP120; bet 92.7 0.45 1.5E-05 33.9 6.6 69 6-74 846-928 (950)
256 3efz_A 14-3-3 protein; 14-3-3, 92.5 1 3.5E-05 27.7 7.2 56 17-72 169-226 (268)
257 3mkq_A Coatomer beta'-subunit; 92.3 0.6 2E-05 31.7 6.7 41 23-70 668-708 (814)
258 4a5x_A MITD1, MIT domain-conta 92.1 0.35 1.2E-05 24.5 4.2 30 4-33 20-49 (86)
259 2ff4_A Probable regulatory pro 91.9 1.6 5.3E-05 27.9 8.8 73 11-83 126-211 (388)
260 3txn_A 26S proteasome regulato 91.9 1.6 5.6E-05 28.1 9.3 64 7-72 146-210 (394)
261 1wfd_A Hypothetical protein 15 91.6 0.41 1.4E-05 24.6 4.2 31 3-33 18-48 (93)
262 4b4t_R RPN7, 26S proteasome re 91.5 1.8 6.3E-05 27.9 8.3 67 5-74 173-239 (429)
263 3u84_A Menin; MLL, JUND, ledgf 91.3 0.82 2.8E-05 30.2 6.0 49 19-71 298-346 (550)
264 4gq4_A Menin; tumor suppressor 91.2 0.87 3E-05 30.0 6.1 49 19-71 283-331 (489)
265 2v6x_A Vacuolar protein sortin 90.9 0.54 1.8E-05 23.5 4.2 29 4-32 17-45 (85)
266 2cpt_A SKD1 protein, vacuolar 90.5 0.55 1.9E-05 25.2 4.1 30 4-33 22-51 (117)
267 2w2u_A Hypothetical P60 katani 90.5 0.93 3.2E-05 22.7 6.0 23 50-72 26-48 (83)
268 2crb_A Nuclear receptor bindin 89.9 0.95 3.2E-05 23.4 4.4 29 5-33 20-48 (97)
269 3ax2_A Mitochondrial import re 89.7 0.29 9.8E-06 24.1 2.4 29 5-33 22-50 (73)
270 2br9_A 14-3-3E, 14-3-3 protein 89.4 2.3 7.9E-05 25.6 7.4 54 17-71 147-201 (234)
271 1om2_A Protein (mitochondrial 89.3 0.56 1.9E-05 24.3 3.4 30 4-33 24-53 (95)
272 2uy1_A Cleavage stimulation fa 89.2 2.4 8.3E-05 27.8 7.2 60 10-79 296-356 (493)
273 3t5x_A PCI domain-containing p 89.2 2.1 7.3E-05 24.9 6.5 35 43-77 14-48 (203)
274 2v6y_A AAA family ATPase, P60 88.9 1.3 4.5E-05 22.1 4.6 17 55-71 23-39 (83)
275 4a5x_A MITD1, MIT domain-conta 88.6 1.4 4.7E-05 22.2 4.6 25 48-72 21-45 (86)
276 3ax2_A Mitochondrial import re 87.7 1.5 5.2E-05 21.5 5.3 29 47-75 21-49 (73)
277 1wfd_A Hypothetical protein 15 87.2 1.8 6.3E-05 22.0 4.6 21 51-71 23-43 (93)
278 3iqu_A 14-3-3 protein sigma; s 87.1 3.4 0.00012 24.9 7.4 54 17-71 150-204 (236)
279 2yin_A DOCK2, dedicator of cyt 87.0 2.6 9E-05 27.5 6.2 71 3-73 38-122 (436)
280 1o9d_A 14-3-3-like protein C; 86.8 3.8 0.00013 25.1 7.4 54 17-71 152-206 (260)
281 3ubw_A 14-3-3E, 14-3-3 protein 86.4 4 0.00014 25.0 7.4 54 17-71 173-227 (261)
282 1om2_A Protein (mitochondrial 86.1 1.1 3.9E-05 23.1 3.4 29 47-75 24-52 (95)
283 4b4t_P 26S proteasome regulato 85.6 5.6 0.00019 25.9 7.5 63 5-70 142-204 (445)
284 3uzd_A 14-3-3 protein gamma; s 85.6 4.4 0.00015 24.6 7.4 54 17-71 148-202 (248)
285 3t5v_B Nuclear mRNA export pro 85.6 1.7 5.7E-05 28.7 4.8 72 4-76 180-254 (455)
286 2v6x_A Vacuolar protein sortin 85.6 2.2 7.6E-05 21.2 4.6 19 54-72 24-42 (85)
287 2cpt_A SKD1 protein, vacuolar 85.5 2.3 7.9E-05 22.7 4.6 16 56-71 31-46 (117)
288 2rpa_A Katanin P60 ATPase-cont 85.3 1 3.5E-05 22.4 2.9 26 47-72 16-41 (78)
289 3spa_A Mtrpol, DNA-directed RN 84.4 5 0.00017 29.6 7.0 62 3-72 168-230 (1134)
290 3t5x_A PCI domain-containing p 84.2 1.8 6.2E-05 25.2 4.1 29 5-33 19-47 (203)
291 1wy6_A Hypothetical protein ST 83.6 4.3 0.00015 22.9 5.6 32 43-74 125-156 (172)
292 3kae_A CDC27, possible protein 82.3 5.6 0.00019 23.3 7.7 72 4-75 118-240 (242)
293 2ijq_A Hypothetical protein; s 81.4 4.9 0.00017 22.8 5.0 65 6-72 38-104 (161)
294 2dl1_A Spartin; SPG20, MIT, st 80.1 5.1 0.00018 21.5 5.4 18 14-31 17-34 (116)
295 1qsa_A Protein (soluble lytic 79.9 5.1 0.00017 27.4 5.5 53 10-71 295-347 (618)
296 4a1g_A Mitotic checkpoint seri 79.0 6.5 0.00022 22.0 5.4 32 42-73 100-131 (152)
297 2dl1_A Spartin; SPG20, MIT, st 77.6 6.4 0.00022 21.1 8.1 31 3-33 25-55 (116)
298 3esl_A Checkpoint serine/threo 76.4 6.5 0.00022 23.1 4.6 31 43-73 115-145 (202)
299 3eab_A Spastin; spastin, MIT, 75.3 3.1 0.00011 21.2 2.7 19 14-32 11-29 (89)
300 2wm9_A Dedicator of cytokinesi 75.2 11 0.00037 24.6 5.8 70 3-72 14-117 (428)
301 3myv_A SUSD superfamily protei 74.6 13 0.00045 24.1 6.2 52 19-71 167-218 (454)
302 2wvi_A Mitotic checkpoint seri 73.1 8.9 0.0003 21.7 4.5 31 43-73 96-126 (164)
303 4aez_C MAD3, mitotic spindle c 73.1 8.2 0.00028 23.0 4.5 31 43-73 150-180 (223)
304 4b4t_O 26S proteasome regulato 72.0 17 0.00057 23.3 9.4 66 5-71 132-197 (393)
305 3kez_A Putative sugar binding 71.4 18 0.00062 23.5 6.3 51 20-71 174-224 (461)
306 3o10_A Sacsin; all-helical dom 69.4 11 0.00036 20.6 4.2 20 13-32 3-22 (141)
307 3s6n_M SurviVal motor neuron p 67.4 5.5 0.00019 16.6 2.1 14 16-29 18-31 (37)
308 3t5v_B Nuclear mRNA export pro 65.2 9.8 0.00033 25.1 4.0 29 5-33 225-254 (455)
309 3lew_A SUSD-like carbohydrate 63.0 30 0.001 22.8 6.6 28 45-72 205-232 (495)
310 1zbp_A Hypothetical protein VP 62.9 24 0.00082 21.8 8.4 69 7-76 38-133 (273)
311 2p58_C Putative type III secre 61.4 15 0.0005 19.5 3.5 20 49-68 75-94 (116)
312 3mcx_A SUSD superfamily protei 61.1 21 0.00071 23.3 5.1 29 44-72 203-231 (477)
313 3snx_A SUSD homolog, putative 60.3 33 0.0011 22.4 6.5 29 44-72 192-220 (460)
314 2xze_A STAM-binding protein; h 60.1 19 0.00066 19.8 4.1 29 3-31 43-71 (146)
315 4b4t_S RPN3, 26S proteasome re 56.8 13 0.00045 25.1 3.6 29 5-33 275-303 (523)
316 3qnk_A Putative lipoprotein; a 56.1 41 0.0014 22.2 6.3 28 45-72 184-211 (517)
317 3hdx_A SUSD homolog, SUSD supe 55.2 41 0.0014 22.0 6.4 28 45-72 199-226 (478)
318 2vkj_A TM1634; membrane protei 54.7 21 0.0007 18.4 5.2 42 7-55 60-102 (106)
319 2npu_A FKBP12-rapamycin comple 54.0 25 0.00084 19.1 5.6 61 3-72 43-103 (126)
320 2wpv_A GET4, UPF0363 protein Y 53.4 39 0.0013 21.1 6.1 25 43-67 134-158 (312)
321 2ymb_A MITD1, MIT domain-conta 52.9 2.9 9.8E-05 25.6 0.0 29 5-33 28-56 (257)
322 4gq2_M Nucleoporin NUP120; bet 52.0 8.9 0.0003 27.5 2.3 24 47-70 844-867 (950)
323 3jq1_A SUSD superfamily protei 50.8 35 0.0012 22.4 4.8 52 19-71 157-208 (481)
324 2cfu_A SDSA1; SDS-hydrolase, l 50.6 59 0.002 22.4 6.2 42 47-88 453-494 (658)
325 3bu8_A Telomeric repeat-bindin 47.7 16 0.00055 21.9 2.6 24 7-30 121-144 (235)
326 2uwj_G Type III export protein 47.6 15 0.00052 19.4 2.2 21 48-68 73-93 (115)
327 2wb7_A PT26-6P; extra chromoso 47.4 64 0.0022 21.9 6.4 18 17-34 449-466 (526)
328 2cwy_A Hypothetical protein TT 46.6 28 0.00097 17.6 6.5 61 5-71 6-67 (94)
329 3bqo_A Telomeric repeat-bindin 45.4 24 0.00081 20.9 3.0 27 7-33 124-150 (211)
330 2zan_A Vacuolar protein sortin 45.1 4.5 0.00015 26.2 0.0 28 5-32 16-43 (444)
331 3mv2_A Coatomer subunit alpha; 44.5 58 0.002 20.6 9.3 29 5-33 119-147 (325)
332 2e2a_A Protein (enzyme IIA); h 43.9 34 0.0012 17.8 4.3 25 47-71 24-48 (105)
333 2pjw_V Vacuolar protein sortin 42.8 34 0.0012 17.4 6.3 50 17-71 33-82 (91)
334 1wcr_A PTS system, N, N'-diace 42.7 36 0.0012 17.7 4.3 25 47-71 22-46 (103)
335 3myv_A SUSD superfamily protei 42.2 31 0.001 22.4 3.5 28 4-31 194-221 (454)
336 3lew_A SUSD-like carbohydrate 41.6 31 0.0011 22.7 3.5 26 4-29 207-232 (495)
337 3k1s_A PTS system, cellobiose- 40.6 40 0.0014 17.7 4.3 25 47-71 26-50 (109)
338 3kez_A Putative sugar binding 40.4 34 0.0011 22.3 3.5 27 4-30 200-226 (461)
339 3r9m_A BRO1 domain-containing 40.1 71 0.0024 20.3 6.3 28 45-72 255-282 (376)
340 3mcx_A SUSD superfamily protei 39.2 36 0.0012 22.2 3.5 25 5-29 207-231 (477)
341 3l8r_A PTCA, putative PTS syst 38.9 46 0.0016 17.8 4.3 25 47-71 41-65 (120)
342 2a9u_A Ubiquitin carboxyl-term 38.6 50 0.0017 18.2 4.2 31 3-33 45-75 (144)
343 2ca5_A MXIH; transport protein 37.8 41 0.0014 16.9 3.2 26 57-82 24-49 (85)
344 4fhn_B Nucleoporin NUP120; pro 37.2 17 0.00059 26.5 1.9 59 5-67 904-962 (1139)
345 3fap_B FRAP, FKBP12-rapamycin 37.1 43 0.0015 17.0 5.5 61 3-72 13-73 (94)
346 3hdx_A SUSD homolog, SUSD supe 37.0 41 0.0014 22.0 3.5 25 5-29 202-226 (478)
347 3lpz_A GET4 (YOR164C homolog); 35.0 87 0.003 19.9 6.1 25 43-67 136-160 (336)
348 2cp9_A EF-TS, EF-TSMT, elongat 32.4 36 0.0012 16.1 2.0 15 12-26 34-48 (64)
349 2g0u_A Type III secretion syst 31.7 56 0.0019 16.7 3.2 27 57-83 30-56 (92)
350 3i4g_A SUSD-like carbohydrate 31.7 1.1E+02 0.0039 20.3 5.6 28 45-72 200-227 (528)
351 1u6l_A Hypothetical protein; s 31.0 36 0.0012 18.2 2.2 15 57-71 13-27 (149)
352 2yin_A DOCK2, dedicator of cyt 29.6 1.2E+02 0.0041 19.8 7.3 27 7-33 99-125 (436)
353 3s0r_A De novo designed helica 29.4 32 0.0011 13.2 2.0 12 60-71 4-15 (30)
354 1ixm_A SPO0B, protein (sporula 29.3 78 0.0027 18.1 3.5 25 8-32 40-64 (192)
355 3jys_A SUSD superfamily protei 28.9 96 0.0033 20.5 4.3 26 46-71 191-222 (499)
356 3mfn_A Uncharacterized protein 28.2 66 0.0023 17.9 2.9 61 12-72 31-104 (157)
357 2ynq_A ESSB; membrane protein, 27.2 64 0.0022 18.3 2.8 19 50-68 80-98 (161)
358 1vp7_A Exodeoxyribonuclease VI 26.3 75 0.0026 16.4 4.9 20 14-33 30-49 (100)
359 3c3r_A Programmed cell death 6 26.0 1.3E+02 0.0045 19.1 7.2 27 46-72 278-304 (380)
360 1tsj_A Conserved hypothetical 25.6 39 0.0013 18.0 1.8 14 57-70 14-27 (139)
361 3re2_A Predicted protein; meni 25.3 1.5E+02 0.0051 19.6 6.2 32 5-36 301-332 (472)
362 3u84_A Menin; MLL, JUND, ledgf 25.3 1.6E+02 0.0055 19.9 6.2 32 5-36 323-354 (550)
363 4b4t_O 26S proteasome regulato 24.2 1.4E+02 0.0049 19.0 6.8 63 9-71 85-155 (393)
364 3iqc_A FLIS, flagellar protein 23.8 94 0.0032 16.7 4.5 29 5-33 41-69 (131)
365 3mkr_B Coatomer subunit alpha; 23.2 1.5E+02 0.0051 18.8 8.6 29 5-33 107-135 (320)
366 4fx5_A VON willebrand factor t 22.4 1.5E+02 0.0053 19.4 4.3 28 7-34 389-416 (464)
367 3l22_A SUSD superfamily protei 21.9 59 0.002 21.0 2.3 26 45-70 203-228 (441)
368 2fj6_A Hypothetical UPF0346 pr 21.9 73 0.0025 15.9 2.1 30 3-32 40-69 (82)
369 4abx_A DNA repair protein RECN 21.8 1.2E+02 0.0039 17.0 3.5 32 43-74 90-121 (175)
370 1vh6_A Flagellar protein FLIS; 21.5 1.1E+02 0.0038 16.7 4.5 29 5-33 38-66 (145)
371 1u7i_A Hypothetical protein; s 21.4 51 0.0018 17.1 1.7 13 58-70 17-29 (136)
372 3otn_A SUSD superfamily protei 21.4 1.5E+02 0.0051 19.4 4.1 27 45-71 190-225 (482)
373 3rau_A Tyrosine-protein phosph 21.0 1.7E+02 0.0058 18.6 4.6 26 46-71 255-280 (363)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.75 E-value=2.6e-17 Score=90.38 Aligned_cols=78 Identities=15% Similarity=0.048 Sum_probs=64.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.+.|..+.+.|+|++|+.+|++++++.|.. +.++.++|.++.++|++++|+.+|+++++++|+++.++.+
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4678888999999999999999999887766 4455888888888888888888888888888888888888
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 87 lg~~~~~ 93 (126)
T 4gco_A 87 KAACLVA 93 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887753
No 2
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.74 E-value=2.8e-17 Score=93.12 Aligned_cols=79 Identities=9% Similarity=-0.072 Sum_probs=73.0
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
++.++|.++...|++++|+.+|++++++.|.. +..++++|.++..+|++++|+.+|+++++++|+++.+++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 35789999999999999999999999998877 445599999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q psy8498 82 CIVVKEGV 89 (90)
Q Consensus 82 ~l~~~~~~ 89 (90)
++|.++..
T Consensus 109 ~lg~~~~~ 116 (151)
T 3gyz_A 109 HTGQCQLR 116 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 3
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.72 E-value=1.5e-16 Score=89.47 Aligned_cols=78 Identities=10% Similarity=0.014 Sum_probs=71.9
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
...++|.+|...|+|++|+++|++++++.|+. +.++.++|.++.++|++++|+.+|+++++++|+++.++.
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQERD---------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 34689999999999999999999999998877 556699999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
++|.++.
T Consensus 104 ~la~~~~ 110 (150)
T 4ga2_A 104 KIAELLC 110 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 4
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.70 E-value=2.5e-16 Score=86.41 Aligned_cols=77 Identities=10% Similarity=-0.035 Sum_probs=71.0
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.++|.++..+|++++|+..|++++++.|.. ...+.++|.++..+|++++|+++|+++++++|+++.++.
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---------IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 35789999999999999999999999998776 556699999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy8498 82 CIVVKE 87 (90)
Q Consensus 82 ~l~~~~ 87 (90)
+++.+.
T Consensus 120 ~l~~~l 125 (126)
T 4gco_A 120 GVRNCL 125 (126)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 998774
No 5
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.68 E-value=7.2e-17 Score=88.58 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=67.8
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh----
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---- 77 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---- 77 (90)
++.++|.++...|+|++|+.+|++++++.|.. +.+++++|.+|.++|++++|+++|+++++++|++.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 35789999999999999999999999998776 55679999999999999999999999999988654
Q ss_pred ---HHHHHHHHHHh
Q psy8498 78 ---STFCCIVVKEG 88 (90)
Q Consensus 78 ---~~~~~l~~~~~ 88 (90)
.++.++|.++.
T Consensus 81 ~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQ 94 (127)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35667776654
No 6
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2e-15 Score=81.89 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=70.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|..+...|+|++|+.+|++++++.|.. ..++.++|.++.++|++++|+.+|+++++++|.++.++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 5688999999999999999999999998776 4566999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 78 lg~~~~~ 84 (126)
T 3upv_A 78 KATAQIA 84 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 7
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.65 E-value=2.3e-15 Score=84.53 Aligned_cols=78 Identities=13% Similarity=0.014 Sum_probs=70.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|++++++.|.. +..++++|.++..+|++++|+.+|++++.++|+++.++++
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCccc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 5678999999999999999999999998776 4455999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 95 lg~~~~~ 101 (148)
T 2vgx_A 95 AAECLLQ 101 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 8
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.64 E-value=3.8e-15 Score=85.04 Aligned_cols=88 Identities=15% Similarity=-0.005 Sum_probs=73.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc---chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-------
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI---IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV------- 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------- 72 (90)
+.+.|..+...|+|++|+.+|++|+++.|...... .....+.++.++|.++.++|++++|+.+|++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 56889999999999999999999999999842210 01111236799999999999999999999999999
Q ss_pred CCCChHHH----HHHHHHHhcC
Q psy8498 73 APMKASTF----CCIVVKEGVL 90 (90)
Q Consensus 73 ~~~~~~~~----~~l~~~~~~~ 90 (90)
+|+++.+| ++.|.++..|
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~l 115 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGL 115 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHhHHHHHHHC
Confidence 99999999 9999988643
No 9
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.64 E-value=6.2e-15 Score=75.40 Aligned_cols=77 Identities=23% Similarity=0.205 Sum_probs=70.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++.++|.++...|++++|+.+++++++++|.++.++.+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 5678999999999999999999999987655 4456999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 83 l~~~~~ 88 (91)
T 1na3_A 83 LGNAKQ 88 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 10
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.7e-15 Score=78.26 Aligned_cols=78 Identities=18% Similarity=0.148 Sum_probs=69.9
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK----- 76 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 76 (90)
.+.++|.++...|++++|+.+|++++++.|.. +.++.++|.++..+|++++|+.+|+++++++|++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 35689999999999999999999999997765 4566999999999999999999999999999998
Q ss_pred -hHHHHHHHHHHh
Q psy8498 77 -ASTFCCIVVKEG 88 (90)
Q Consensus 77 -~~~~~~l~~~~~ 88 (90)
..++..+|.++.
T Consensus 77 ~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 77 RSKLQYRLELAQG 89 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 778888887764
No 11
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.63 E-value=9.9e-15 Score=82.29 Aligned_cols=87 Identities=16% Similarity=0.071 Sum_probs=72.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC--Ccc-------hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG--EII-------ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+.+.|..+...|+|++|+.+|++++++.+.... .+. ......++.++|.++.++|++++|+.++++++.++
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 568899999999999999999999999655311 000 12224577999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhc
Q psy8498 74 PMKASTFCCIVVKEGV 89 (90)
Q Consensus 74 ~~~~~~~~~l~~~~~~ 89 (90)
|.++.+++.+|.++..
T Consensus 94 p~~~~a~~~~g~~~~~ 109 (162)
T 3rkv_A 94 ETNEKALFRRAKARIA 109 (162)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH
Confidence 9999999999998864
No 12
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.63 E-value=5.2e-15 Score=82.09 Aligned_cols=78 Identities=13% Similarity=0.011 Sum_probs=70.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. +..+..+|.++..+|++++|+.+|++++.++|.++.+++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYD---------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4578999999999999999999999988766 4455999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 92 lg~~~~~ 98 (142)
T 2xcb_A 92 AAECHLQ 98 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 13
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.63 E-value=5.9e-15 Score=83.35 Aligned_cols=78 Identities=19% Similarity=0.094 Sum_probs=65.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|+|++|+.+|++++++.|.. ..++.++|.++..+|++++|+.+|+++++++|.++.+++.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5678888999999999999999999887765 4556888999999999999999999999998888888888
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 85 lg~~~~~ 91 (164)
T 3sz7_A 85 LGLARFD 91 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888754
No 14
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.62 E-value=2.7e-15 Score=101.94 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=57.7
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
++.|+|.++.++|++++|+.+|++|+++.|+. ..+++++|.++.++|++++|+.+|+++++++|+++.++.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEF---------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 46778888888888888888888888877665 444577777777777777777777777777777777777
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
++|.++.
T Consensus 82 nLg~~l~ 88 (723)
T 4gyw_A 82 NMGNTLK 88 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776664
No 15
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.62 E-value=1.1e-14 Score=79.17 Aligned_cols=77 Identities=18% Similarity=0.091 Sum_probs=71.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+..|+++++..|.. ...+..+|.++...|++++|+..|+++++++|+++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER---------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4678999999999999999999999998877 4455999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 91 la~~~~ 96 (121)
T 1hxi_A 91 LAVSHT 96 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 16
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.61 E-value=8.9e-15 Score=85.77 Aligned_cols=75 Identities=15% Similarity=0.057 Sum_probs=70.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
++|.++...|++++|+.+|++++++.|+. ..++.++|.++..+|++++|+.+|+++++++|+++.++.++|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 129 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNN---------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 39999999999999999999999998877 556699999999999999999999999999999999999999
Q ss_pred HHHh
Q psy8498 85 VKEG 88 (90)
Q Consensus 85 ~~~~ 88 (90)
.++.
T Consensus 130 ~~~~ 133 (208)
T 3urz_A 130 NYYY 133 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 17
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.58 E-value=3.3e-14 Score=77.53 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=71.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++.++|.++..+|++++|+.++++++.++|.++.++..
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 5688999999999999999999999998765 4566999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 83 l~~~~~~ 89 (137)
T 3q49_B 83 LGQCQLE 89 (137)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 18
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=2e-14 Score=97.65 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=47.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.|+|.++..+|++++|+.+|++++++.|+. +.+++++|.++.++|++++|+++|+++++++|+++.++.+
T Consensus 46 ~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~ 116 (723)
T 4gyw_A 46 HSNLASVLQQQGKLQEALMHYKEAIRISPTF---------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4566677777777777777777777666554 3344556666666666666666666666666655555555
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 117 Lg~~~~ 122 (723)
T 4gyw_A 117 LASIHK 122 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 19
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.57 E-value=3.2e-15 Score=83.94 Aligned_cols=76 Identities=7% Similarity=-0.069 Sum_probs=65.8
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
+||.++...|++++|+..+++++...|+. +..++.+|.+|.++|++++|+++|+++++++|+++.++..+|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~---------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK---------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLG 72 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH---------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 68999999999999999999999998877 334489999999999999999999999999999999999999
Q ss_pred HHHhc
Q psy8498 85 VKEGV 89 (90)
Q Consensus 85 ~~~~~ 89 (90)
.++..
T Consensus 73 ~~~~~ 77 (150)
T 4ga2_A 73 LLYEL 77 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 20
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.56 E-value=1.6e-13 Score=75.13 Aligned_cols=80 Identities=8% Similarity=0.015 Sum_probs=67.2
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.|+|.+|..+|+|++|+..|++++++.|..... ......++.++|.++..+|++++|+++|++++...| ++....
T Consensus 44 ~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 44 FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD--YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 36789999999999999999999999999987544 233356789999999999999999999999999987 455554
Q ss_pred HHH
Q psy8498 82 CIV 84 (90)
Q Consensus 82 ~l~ 84 (90)
.+.
T Consensus 121 ~l~ 123 (127)
T 4gcn_A 121 KVK 123 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 21
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.56 E-value=1.3e-13 Score=73.34 Aligned_cols=83 Identities=14% Similarity=0.042 Sum_probs=70.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
...||..+...++|..|+.+|++|++..+..... ....+.++.++|.++.++|+++.|+.+++++++++|.+..+..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~--~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC--cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 4579999999999999999999999987655321 22345678999999999999999999999999999999999888
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
++...
T Consensus 86 ~~~~~ 90 (104)
T 2v5f_A 86 LKYFE 90 (104)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87543
No 22
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.55 E-value=8.9e-14 Score=72.89 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=71.0
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC--ChHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM--KAST 79 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~ 79 (90)
.+.++|.++...|++++|+.+|+++++..|.. ..++.++|.++..+|++++|+.+++++++++|. ++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence 45689999999999999999999999987654 445699999999999999999999999999999 9999
Q ss_pred HHHHHHHHhc
Q psy8498 80 FCCIVVKEGV 89 (90)
Q Consensus 80 ~~~l~~~~~~ 89 (90)
+..+|.++..
T Consensus 79 ~~~l~~~~~~ 88 (112)
T 2kck_A 79 WAAKADALRY 88 (112)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 23
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=5.9e-14 Score=75.99 Aligned_cols=79 Identities=15% Similarity=0.009 Sum_probs=70.8
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC------CC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------PM 75 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~ 75 (90)
.+.++|.++...|++++|+..|++++++.|.. ...+.++|.++..+|++++|+.+|+++++++ |.
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~ 110 (126)
T 3upv_A 40 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchh
Confidence 35789999999999999999999999998766 5566999999999999999999999999999 88
Q ss_pred ChHHHHHHHHHHhc
Q psy8498 76 KASTFCCIVVKEGV 89 (90)
Q Consensus 76 ~~~~~~~l~~~~~~ 89 (90)
+..+...++.+...
T Consensus 111 ~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 111 AREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877653
No 24
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.54 E-value=5.5e-14 Score=79.19 Aligned_cols=77 Identities=19% Similarity=-0.006 Sum_probs=68.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh-HHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA-STF 80 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~ 80 (90)
.+.|+|.+|...|+|++|+..+++++++.|.. +..++++|.++..+|++++|+.+|++++.++|+++ ...
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 135 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETN---------EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA 135 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc---------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH
Confidence 36789999999999999999999999997766 56679999999999999999999999999999988 556
Q ss_pred HHHHHHH
Q psy8498 81 CCIVVKE 87 (90)
Q Consensus 81 ~~l~~~~ 87 (90)
..++.+.
T Consensus 136 ~~l~~~~ 142 (162)
T 3rkv_A 136 REMKIVT 142 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 25
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.54 E-value=4.9e-14 Score=79.54 Aligned_cols=77 Identities=14% Similarity=-0.027 Sum_probs=68.8
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.++|.++...|++++|+.+|++++++.|.. ...++++|.++..+|++++|+.+|+++++++|+++.++.
T Consensus 47 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 47 YLSNRAAAYSASGQHEKAAEDAELATVVDPKY---------SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 35789999999999999999999999998776 556699999999999999999999999999999988777
Q ss_pred HHHHHH
Q psy8498 82 CIVVKE 87 (90)
Q Consensus 82 ~l~~~~ 87 (90)
..+...
T Consensus 118 ~~~l~~ 123 (164)
T 3sz7_A 118 KRGLET 123 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 26
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=1.3e-13 Score=78.64 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=68.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.++|.+|..+|+|++|+.+|++++++.|+. ..++..+|.++.++|++++|+..+++++...|.++.++.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN---------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence 36789999999999999999999999998876 455688999999999999999999999999888888888
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
.+|.++.
T Consensus 78 ~~~~~~~ 84 (184)
T 3vtx_A 78 ILGSANF 84 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777654
No 27
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.54 E-value=2.1e-13 Score=71.01 Aligned_cols=71 Identities=18% Similarity=0.088 Sum_probs=64.1
Q ss_pred CchhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHH-HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498 1 MDLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEP-LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 1 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (90)
|...+.|.++...|++++|+..|+++++..|.. .. .++++|.++..+|++++|+.+|+++++++|+++.+
T Consensus 1 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 1 MDQLKTIKELINQGDIENALQALEEFLQTEPVG---------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp CCTHHHHHHHHHHTCHHHHHHHHHHHHHHCSST---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred CcHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 345688999999999999999999999987765 44 66999999999999999999999999999999888
Q ss_pred H
Q psy8498 80 F 80 (90)
Q Consensus 80 ~ 80 (90)
+
T Consensus 72 ~ 72 (99)
T 2kc7_A 72 Q 72 (99)
T ss_dssp H
T ss_pred H
Confidence 7
No 28
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.53 E-value=1.7e-14 Score=82.37 Aligned_cols=77 Identities=12% Similarity=-0.019 Sum_probs=64.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHH-------HHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSK-------VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
.+.|+|.++...|+|++|+.+|.+++++ .|+. ...|...+++.|.++..+|++++|+.+|+++++++|
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~-----~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE-----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch-----HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999999999 5544 333333449999999999999999999999999999
Q ss_pred CChHHHHHH
Q psy8498 75 MKASTFCCI 83 (90)
Q Consensus 75 ~~~~~~~~l 83 (90)
++......+
T Consensus 134 ~d~~~~~~~ 142 (159)
T 2hr2_A 134 ERKGETPGK 142 (159)
T ss_dssp HCCSCCTTH
T ss_pred CcHHHHHHH
Confidence 765554433
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=1.2e-13 Score=81.41 Aligned_cols=78 Identities=17% Similarity=-0.072 Sum_probs=68.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-----------cCHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-----------KKYEEALEFHKQALV 71 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~ 71 (90)
+.++|.++...|++++|+..|++++++.|+. ...+.++|.++..+ |++++|+..|+++++
T Consensus 42 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 42 LYWLARTQLKLGLVNPALENGKTLVARTPRY---------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence 5678888999999999999999999887766 45569999999999 999999999999999
Q ss_pred hCCCChHHHHHHHHHHhc
Q psy8498 72 VAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 72 ~~~~~~~~~~~l~~~~~~ 89 (90)
++|+++.++..+|.++..
T Consensus 113 ~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 113 VNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp HCTTCHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHH
Confidence 999999999999988753
No 30
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.51 E-value=3.3e-13 Score=79.03 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=69.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHh----------------HHHHHHHhcCHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN----------------LGHVNRKLKKYEEALEFH 66 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----------------lg~~~~~~g~~~~A~~~~ 66 (90)
+...|..+...|++++|+.+|++++++.|+. +..+.. +|.++.++|++++|+.+|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDR---------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH---------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567999999999999999999999999987 333455 999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHh
Q psy8498 67 KQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 67 ~~al~~~~~~~~~~~~l~~~~~ 88 (90)
+++++++|+++.++..+|.++.
T Consensus 78 ~~al~~~p~~~~~~~~lg~~~~ 99 (208)
T 3urz_A 78 KELLQKAPNNVDCLEACAEMQV 99 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999999999999875
No 31
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.51 E-value=1.8e-13 Score=73.58 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=62.7
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.++|.++...|++++|+.+|++++++.|+. ..++.++|.++..+|++++|+.++++++...|.++....
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---------QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 35789999999999999999999999998876 556699999999999999999999999999998876643
No 32
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.51 E-value=4.9e-14 Score=79.67 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=61.0
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (90)
.+.++|.++...|+|++|+.+|++++++.|+. +..++++|.++..+|++++|+.+|++++++.|+.+
T Consensus 72 ~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 72 YIMGLAAIYQIKEQFQQAADLYAVAFALGKND---------YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 36789999999999999999999999999876 44559999999999999999999999999998654
No 33
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.51 E-value=1.3e-13 Score=86.16 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=72.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.|+|.++...|++++|+.+|++++++.|.. ...++++|.++..+|++++|+.+|+++++++|.+..++.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 268 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 36789999999999999999999999998776 556799999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
.++.++.
T Consensus 269 ~l~~~~~ 275 (336)
T 1p5q_A 269 QLAVCQQ 275 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 34
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.51 E-value=1.2e-13 Score=77.50 Aligned_cols=70 Identities=7% Similarity=-0.143 Sum_probs=62.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
+.++|.++...|++++|+.+|++++++.|+. +..++++|.++..+|++++|+.+|+++++++|.++....
T Consensus 58 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---------PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 5689999999999999999999999998876 445699999999999999999999999999988766543
No 35
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.51 E-value=4.4e-13 Score=70.66 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=48.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ...+..+|.++...|++++|+.++++++..+|.++.++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3456666677777777777777776665543 3334666666666666666666666666666666666666
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 78 ~a~~~~ 83 (118)
T 1elw_A 78 KAAALE 83 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665553
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=1.3e-13 Score=81.20 Aligned_cols=77 Identities=19% Similarity=0.050 Sum_probs=71.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+..|+++++..|+. +..+.++|.++..+|++++|+.+|+++++++|+++.++.+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQD---------PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 5688999999999999999999999998876 5566999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 79 lg~~~~ 84 (217)
T 2pl2_A 79 LSEAYV 84 (217)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 37
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.50 E-value=5.2e-13 Score=72.06 Aligned_cols=82 Identities=16% Similarity=0.050 Sum_probs=64.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC---hH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---AS 78 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~ 78 (90)
.+.++|.++...|++++|+..|+++++..|... ..+..+..+|.++.+.|++++|+.+|++++...|++ +.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 77 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG 77 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH
Confidence 356788888889999999999999888876541 112455888889999999999999999988888887 77
Q ss_pred HHHHHHHHHhc
Q psy8498 79 TFCCIVVKEGV 89 (90)
Q Consensus 79 ~~~~l~~~~~~ 89 (90)
+++.+|.++..
T Consensus 78 ~~~~la~~~~~ 88 (129)
T 2xev_A 78 GLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888887653
No 38
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.49 E-value=1.2e-13 Score=76.50 Aligned_cols=75 Identities=8% Similarity=-0.090 Sum_probs=64.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|++++++.|.. +..+.++|.++..+|++++|+.+|++++.++|.++.....
T Consensus 55 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 55 FLGLGACRQSLGLYEQALQSYSYGALMDINE---------PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 5688999999999999999999999998876 4455999999999999999999999999999987765544
Q ss_pred HHHH
Q psy8498 83 IVVK 86 (90)
Q Consensus 83 l~~~ 86 (90)
...+
T Consensus 126 ~~~~ 129 (142)
T 2xcb_A 126 AARA 129 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 39
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.49 E-value=1e-13 Score=79.07 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=64.6
Q ss_pred chhhHHHHHHhhCCH----------HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-----------CHH
Q psy8498 2 DLDNVELSSDKSFSY----------TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----------KYE 60 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~ 60 (90)
.+.++|.++...+++ ++|+..|++|+++.|+. ..+++++|.+|..+| +++
T Consensus 38 a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~---------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~ 108 (158)
T 1zu2_A 38 NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---------DEAVWCIGNAYTSFAFLTPDETEAKHNFD 108 (158)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc---------HHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence 367899999998875 59999999999999887 555699999999985 899
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHH
Q psy8498 61 EALEFHKQALVVAPMKASTFCCIVV 85 (90)
Q Consensus 61 ~A~~~~~~al~~~~~~~~~~~~l~~ 85 (90)
+|+.+|++|++++|++......+..
T Consensus 109 eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 109 LATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999998776665544
No 40
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.49 E-value=3.5e-13 Score=82.26 Aligned_cols=86 Identities=10% Similarity=-0.046 Sum_probs=72.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK----- 76 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 76 (90)
++.++|.+|...|+|++|+.+|+++++..+..... ......+++++|.+|.++|++++|+.++++++++.+..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 36899999999999999999999999988876332 34445678999999999999999999999999886532
Q ss_pred -hHHHHHHHHHHhc
Q psy8498 77 -ASTFCCIVVKEGV 89 (90)
Q Consensus 77 -~~~~~~l~~~~~~ 89 (90)
+.++.++|.++..
T Consensus 235 ~~~~~~~lg~~~~~ 248 (293)
T 3u3w_A 235 IGQLYYQRGECLRK 248 (293)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 6778899988754
No 41
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.49 E-value=3.4e-13 Score=78.11 Aligned_cols=77 Identities=21% Similarity=0.052 Sum_probs=70.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|++++++.|.. ..+++++|.++..+|++++|+.+|+++++++|.++.++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 161 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 161 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5689999999999999999999999997765 5567999999999999999999999999999999999998
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
++.++.
T Consensus 162 l~~~~~ 167 (198)
T 2fbn_A 162 YELCVN 167 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 42
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.48 E-value=4.2e-13 Score=72.27 Aligned_cols=77 Identities=12% Similarity=0.011 Sum_probs=48.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++.++|.++...|++++|+.++++++.++|.+..++..
T Consensus 53 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 123 (133)
T 2lni_A 53 YSNRAACYTKLLEFQLALKDCEECIQLEPTF---------IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123 (133)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHH
Confidence 3455666666666666666666666654433 3344666777777777777777777777776666666666
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
++.++.
T Consensus 124 l~~~~~ 129 (133)
T 2lni_A 124 YQRCMM 129 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 43
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.48 E-value=7.3e-13 Score=73.83 Aligned_cols=77 Identities=13% Similarity=0.009 Sum_probs=48.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++.++|.++...|++++|+.++++++.++|.++.++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSN---------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3456666777777777777777777665543 3344666666666666666666666666666666666666
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 87 ~a~~~~ 92 (166)
T 1a17_A 87 RAASNM 92 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 44
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.48 E-value=2e-13 Score=73.54 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=71.2
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
++.++|.++...|++++|+.+|+++++..|.. ..++.++|.++...|++++|+.+++++++++|.++.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 36789999999999999999999999987655 455699999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q psy8498 82 CIVVKEGV 89 (90)
Q Consensus 82 ~l~~~~~~ 89 (90)
.+|.++..
T Consensus 89 ~la~~~~~ 96 (133)
T 2lni_A 89 RKAAALEA 96 (133)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 45
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.48 E-value=6.3e-13 Score=71.11 Aligned_cols=76 Identities=20% Similarity=0.116 Sum_probs=43.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.++|.++...|++++|+.+++++++..|.. ..++..+|.++...|++++|+.++++++.++|.++.++..+
T Consensus 50 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 120 (131)
T 2vyi_A 50 CNRAAAYSKLGNYAGAVQDCERAICIDPAY---------SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhcCccC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHH
Confidence 345555555555555555555555554332 23346666666666666666666666666666666666666
Q ss_pred HHHHh
Q psy8498 84 VVKEG 88 (90)
Q Consensus 84 ~~~~~ 88 (90)
|.++.
T Consensus 121 ~~~~~ 125 (131)
T 2vyi_A 121 KIAEL 125 (131)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 46
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.47 E-value=4e-13 Score=70.68 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=58.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
+.++|.++...|++++|+.+|++++++.|.. ..++.++|.++..+|++++|++.|++++++.|.
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETDPDY---------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 5689999999999999999999999998876 345599999999999999999999999998764
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=5.4e-13 Score=78.40 Aligned_cols=78 Identities=22% Similarity=0.154 Sum_probs=64.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHH-hhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVK-QLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
+.+.|.++...|+|++|+.+|++++++.| .. ...+.++|.++..+|++++|+.+|++++.++|.++.++.
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 80 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---------SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYI 80 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHH
Confidence 56789999999999999999999999876 33 234477899999999999999999999999888888888
Q ss_pred HHHHHHhc
Q psy8498 82 CIVVKEGV 89 (90)
Q Consensus 82 ~l~~~~~~ 89 (90)
.+|.++..
T Consensus 81 ~l~~~~~~ 88 (228)
T 4i17_A 81 GKSAAYRD 88 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887753
No 48
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.47 E-value=3.9e-13 Score=84.00 Aligned_cols=87 Identities=14% Similarity=-0.025 Sum_probs=73.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
+.++|.++...|+|++|+.+|++++++.|...... .......++.++|.++.++|++++|+.+|+++++++|.+
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 229 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 229 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 56889999999999999999999999988763110 011123567999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhc
Q psy8498 77 ASTFCCIVVKEGV 89 (90)
Q Consensus 77 ~~~~~~l~~~~~~ 89 (90)
+.+++++|.++..
T Consensus 230 ~~a~~~lg~~~~~ 242 (336)
T 1p5q_A 230 EKGLSRRGEAHLA 242 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=1.1e-13 Score=88.11 Aligned_cols=76 Identities=8% Similarity=-0.064 Sum_probs=42.6
Q ss_pred hhhHHHHHHhhCC-HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 3 LDNVELSSDKSFS-YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 3 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
+.++|.++...|+ +++|+.+|++++++.|+. ..+++++|.++..+|++++|+.+|+++++++|++..++.
T Consensus 134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~---------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~ 204 (382)
T 2h6f_A 134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204 (382)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHH
Confidence 4556666666664 666666666666665554 223355555555555555555555555555555555555
Q ss_pred HHHHHH
Q psy8498 82 CIVVKE 87 (90)
Q Consensus 82 ~l~~~~ 87 (90)
++|.++
T Consensus 205 ~lg~~~ 210 (382)
T 2h6f_A 205 HRQWVI 210 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 50
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=1.3e-12 Score=68.82 Aligned_cols=76 Identities=13% Similarity=-0.023 Sum_probs=68.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+++++++..|.. ...+.++|.++...|++++|.++++++++++|.++.++..
T Consensus 41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5678999999999999999999999987654 4556999999999999999999999999999999999988
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
++.+.
T Consensus 112 l~~~~ 116 (118)
T 1elw_A 112 LQNME 116 (118)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88765
No 51
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.46 E-value=8.5e-13 Score=76.58 Aligned_cols=77 Identities=19% Similarity=0.146 Sum_probs=63.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh-----
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA----- 77 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----- 77 (90)
+.++|.++...|++++|+.+|++++++.|.. ...+.++|.++..+|++++|+.+|++++++.|.+.
T Consensus 40 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 110 (213)
T 1hh8_A 40 CFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHH
Confidence 5678888999999999999999998886654 44568899999999999999999999998877655
Q ss_pred -----------HHHHHHHHHHh
Q psy8498 78 -----------STFCCIVVKEG 88 (90)
Q Consensus 78 -----------~~~~~l~~~~~ 88 (90)
.++.++|.++.
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~ 132 (213)
T 1hh8_A 111 ILGLQFKLFACEVLYNIAFMYA 132 (213)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHH
T ss_pred HhccccCccchHHHHHHHHHHH
Confidence 77888887764
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=4.2e-13 Score=78.87 Aligned_cols=84 Identities=14% Similarity=-0.009 Sum_probs=69.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC--ChHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM--KASTF 80 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~ 80 (90)
+.++|.++...|++++|+.+|++++++.|.... .......++.++|.++..+|++++|+++|+++++++|+ ++.++
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT--IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 567889999999999999999999988776510 01112356799999999999999999999999999999 89999
Q ss_pred HHHHHHHh
Q psy8498 81 CCIVVKEG 88 (90)
Q Consensus 81 ~~l~~~~~ 88 (90)
.++|.++.
T Consensus 157 ~~l~~~~~ 164 (228)
T 4i17_A 157 YSLGVLFY 164 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.2e-12 Score=74.56 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=23.2
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
..+|.++.++|++++|+++|+++++++|.++.++.++|.++.
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 111 YKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 455555555555555555555555555555555555555543
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=2.2e-13 Score=86.76 Aligned_cols=75 Identities=11% Similarity=0.006 Sum_probs=38.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
.++|.++...|++++|+..|++++++.|.. ..+++++|.++..+|+ +++|+.+|+++++++|++..++.+
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l~P~~---------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIELNAAN---------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCccC---------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 344555555555555555555555554444 2233555555555553 555555555555555555555555
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
+|.++
T Consensus 172 ~g~~~ 176 (382)
T 2h6f_A 172 RRVLV 176 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 55
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.46 E-value=2e-12 Score=69.14 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=70.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+.++++++...|.++.++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 5678999999999999999999999987655 4456999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 86 ~~~~~~~ 92 (131)
T 2vyi_A 86 MGLALSS 92 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.45 E-value=7e-13 Score=80.98 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=71.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|+|++|+.+|+++++..|.. ...+.++|.++.++|++++|+.+++++++++|.++.+++.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5678999999999999999999999997765 5566999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 78 lg~~~~~ 84 (281)
T 2c2l_A 78 LGQCQLE 84 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 57
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.45 E-value=7e-13 Score=76.77 Aligned_cols=87 Identities=15% Similarity=-0.017 Sum_probs=72.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcch-------hhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIA-------DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
+.++|..+...|+|++|+.+|++++++.|........ .....++.++|.++..+|++++|+.+++++++++|.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 5678999999999999999999999987765321110 001246799999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhc
Q psy8498 76 KASTFCCIVVKEGV 89 (90)
Q Consensus 76 ~~~~~~~l~~~~~~ 89 (90)
++.+++.+|.++..
T Consensus 121 ~~~~~~~lg~~~~~ 134 (198)
T 2fbn_A 121 NVKALYKLGVANMY 134 (198)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999998753
No 58
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.45 E-value=8.7e-13 Score=80.69 Aligned_cols=85 Identities=11% Similarity=0.003 Sum_probs=70.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-cCHHHHHHHHHHHHhhCCCC----
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-KKYEEALEFHKQALVVAPMK---- 76 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~---- 76 (90)
++.++|.+|...|++++|+.+|++++++.+..+.. ...+.++.++|.+|... |++++|+.+|++|+++.|.+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 46789999999999999999999999999887543 22245679999999996 99999999999999998743
Q ss_pred --hHHHHHHHHHHhc
Q psy8498 77 --ASTFCCIVVKEGV 89 (90)
Q Consensus 77 --~~~~~~l~~~~~~ 89 (90)
..++.++|.++..
T Consensus 156 ~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 156 LSNKCFIKCADLKAL 170 (292)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 4567788887753
No 59
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.45 E-value=2.3e-12 Score=68.37 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=22.0
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE 87 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 87 (90)
..+|.++...|++++|+.+++++++++|.++.++..+|.++
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555443
No 60
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.45 E-value=2.3e-12 Score=68.39 Aligned_cols=78 Identities=23% Similarity=0.203 Sum_probs=69.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+.++++++...|.++.++..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 5678999999999999999999999986654 4456999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 83 la~~~~~ 89 (125)
T 1na0_A 83 LGNAYYK 89 (125)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 61
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=7.7e-13 Score=70.87 Aligned_cols=78 Identities=14% Similarity=0.052 Sum_probs=68.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 76 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++.++|.++...|++++|+.++++++.+.|.+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTN---------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 5688999999999999999999999987655 4566999999999999999999999999998866
Q ss_pred -hHHHHHHHHHHhc
Q psy8498 77 -ASTFCCIVVKEGV 89 (90)
Q Consensus 77 -~~~~~~l~~~~~~ 89 (90)
+.++..+|.++..
T Consensus 78 ~~~~~~~la~~~~~ 91 (131)
T 1elr_A 78 IAKAYARIGNSYFK 91 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 7788888887753
No 62
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.44 E-value=4.5e-13 Score=86.71 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=68.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.|+|.+|...|+|++|+.+|++++++.|.. ...++++|.++..+|++++|+.+|+++++++|++..++.
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 389 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSAN---------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 35689999999999999999999999998876 566799999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
.++.++.
T Consensus 390 ~l~~~~~ 396 (457)
T 1kt0_A 390 QISMCQK 396 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988775
No 63
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.44 E-value=1.9e-12 Score=82.04 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=72.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC-------CcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG-------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
+.++|..+...|+|++|+.+|++++++.+.... .........++.++|.++.++|++++|+.+++++++++|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 568899999999999999999999997655310 0012223557799999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhc
Q psy8498 76 KASTFCCIVVKEGV 89 (90)
Q Consensus 76 ~~~~~~~l~~~~~~ 89 (90)
++.+++.+|.++..
T Consensus 306 ~~~a~~~lg~~~~~ 319 (370)
T 1ihg_A 306 NTKALYRRAQGWQG 319 (370)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998864
No 64
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.44 E-value=2.4e-13 Score=73.05 Aligned_cols=68 Identities=16% Similarity=0.051 Sum_probs=58.2
Q ss_pred hhCCHHHHHHHHHHHHHH---HHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 12 KSFSYTVAENCFMEALSK---VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 12 ~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
.+|++++|+.+|++++++ .|.. ..++.++|.++..+|++++|+.+|+++++++|+++.++..+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL---------AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 468999999999999998 5665 5567999999999999999999999999999999999999999875
No 65
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.43 E-value=2.7e-12 Score=78.48 Aligned_cols=84 Identities=11% Similarity=-0.064 Sum_probs=69.9
Q ss_pred chhhHHHHHHhh-CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH--
Q psy8498 2 DLDNVELSSDKS-FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS-- 78 (90)
Q Consensus 2 ~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 78 (90)
.+.++|.+|... |++++|+.+|++++++.|..+.. .....++.++|.++.++|++++|+.+|++++.+.|.++.
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 367899999996 99999999999999999976432 122456799999999999999999999999999986653
Q ss_pred -----HHHHHHHHHh
Q psy8498 79 -----TFCCIVVKEG 88 (90)
Q Consensus 79 -----~~~~l~~~~~ 88 (90)
++.++|.++.
T Consensus 196 ~~~~~~~~~lg~~~~ 210 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQL 210 (292)
T ss_dssp GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 4677887765
No 66
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.43 E-value=1.1e-12 Score=84.87 Aligned_cols=87 Identities=16% Similarity=0.029 Sum_probs=73.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
+.++|.++...|+|++|+.+|++|+++.|...... .......+++++|.++.++|++++|+.+|+++++++|++
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 350 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 350 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 56889999999999999999999999988752100 011224567999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhc
Q psy8498 77 ASTFCCIVVKEGV 89 (90)
Q Consensus 77 ~~~~~~l~~~~~~ 89 (90)
+.+++++|.++..
T Consensus 351 ~~a~~~~g~a~~~ 363 (457)
T 1kt0_A 351 EKGLYRRGEAQLL 363 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 67
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=1.8e-12 Score=77.27 Aligned_cols=78 Identities=18% Similarity=0.106 Sum_probs=66.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+.+|+++++++|.++.++..
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 116 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPDM---------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 116 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHH
Confidence 5678999999999999999999999986654 4456889999999999999999999999999988888888
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 117 la~~~~~ 123 (275)
T 1xnf_A 117 RGIALYY 123 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887753
No 68
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.4e-12 Score=69.86 Aligned_cols=74 Identities=16% Similarity=0.029 Sum_probs=38.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.++|.++...|++++|+.+|+++++..|.. ...+.++|.++..+|++++|+.+|++++.++|++..++..+
T Consensus 69 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 69 RNRAACHLKLEDYDKAETEASKAIEKDGGD---------VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhCccC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 344555555555555555555555543332 22335555555555555555555555555555555554444
Q ss_pred HHH
Q psy8498 84 VVK 86 (90)
Q Consensus 84 ~~~ 86 (90)
+.+
T Consensus 140 ~~~ 142 (148)
T 2dba_A 140 RNI 142 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 69
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.42 E-value=6.9e-13 Score=72.04 Aligned_cols=66 Identities=12% Similarity=-0.008 Sum_probs=55.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (90)
+.++|.++...|++++|+.+|++++++.|+. ...+.++|.++...|++++|+..++++++++|.++
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 54 WRSLGLTQAENEKDGLAIIALNHARMLDPKD---------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 5689999999999999999999999998876 45569999999999999999999999999998764
No 70
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.41 E-value=2.1e-12 Score=78.85 Aligned_cols=86 Identities=10% Similarity=-0.046 Sum_probs=70.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC------
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM------ 75 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------ 75 (90)
++.++|.+|...|++++|+.+|++++++.+..+.. ......+++++|.+|..+|++++|+.++++++.+.+.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 46789999999999999999999999988776443 1112357899999999999999999999999988642
Q ss_pred ChHHHHHHHHHHhc
Q psy8498 76 KASTFCCIVVKEGV 89 (90)
Q Consensus 76 ~~~~~~~l~~~~~~ 89 (90)
.+.++.++|.++..
T Consensus 235 ~~~~~~~lg~~y~~ 248 (293)
T 2qfc_A 235 IGQLYYQRGECLRK 248 (293)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 26778899988753
No 71
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.41 E-value=8.9e-12 Score=66.62 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=69.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|..... ......++.++|.++...|++++|+++|++++.+.| ++.....
T Consensus 41 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 117 (131)
T 1elr_A 41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKK 117 (131)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHH
Confidence 5688999999999999999999999999876333 122244679999999999999999999999999998 5777777
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
++.+..
T Consensus 118 l~~~~~ 123 (131)
T 1elr_A 118 CQQAEK 123 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 72
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=4.2e-12 Score=80.99 Aligned_cols=85 Identities=9% Similarity=-0.002 Sum_probs=69.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC--------
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP-------- 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------- 74 (90)
++++|.++..+|++++|+++|++|+++.+.............++.++|.+|..+|++++|+.++++++++.+
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 567999999999999999999999999887754433333355779999999999999999999999998742
Q ss_pred CChHHHHHHHHHH
Q psy8498 75 MKASTFCCIVVKE 87 (90)
Q Consensus 75 ~~~~~~~~l~~~~ 87 (90)
..+.++.++|.++
T Consensus 134 ~~~~~~~~~g~~~ 146 (472)
T 4g1t_A 134 ESPELDCEEGWTR 146 (472)
T ss_dssp CCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4466677776554
No 73
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.41 E-value=3e-12 Score=71.33 Aligned_cols=75 Identities=17% Similarity=0.028 Sum_probs=66.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ...+.++|.++..+|++++|+.+|+++++++|.+..++..
T Consensus 50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 120 (166)
T 1a17_A 50 YGNRSLAYLRTECYGYALGDATRAIELDKKY---------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 120 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5688999999999999999999999997765 4556999999999999999999999999999998888755
Q ss_pred HHHH
Q psy8498 83 IVVK 86 (90)
Q Consensus 83 l~~~ 86 (90)
++.+
T Consensus 121 ~~~~ 124 (166)
T 1a17_A 121 YQEC 124 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 74
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.41 E-value=2.7e-12 Score=79.63 Aligned_cols=77 Identities=21% Similarity=0.105 Sum_probs=67.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|++++++.|.. ..+++++|.++...|++++|+.+|+++++++|.++.++..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 286 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPED---------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 5678999999999999999999999987665 4456899999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 287 l~~~~~ 292 (365)
T 4eqf_A 287 LGISCI 292 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988875
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=3.8e-12 Score=79.84 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=70.9
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----C-CC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----A-PM 75 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~-~~ 75 (90)
.+.++|.+|...|++++|+.+|++++++.+..++. .....+++++|.+|..+|++++|+++|++++++ + |.
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP---QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 35788999999999999999999999999887443 333556799999999999999999999999984 5 66
Q ss_pred ChHHHHHHHHHHhc
Q psy8498 76 KASTFCCIVVKEGV 89 (90)
Q Consensus 76 ~~~~~~~l~~~~~~ 89 (90)
.+.++.++|.++..
T Consensus 263 ~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 263 LPQAYFLITQIHYK 276 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67788889888753
No 76
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.4e-12 Score=74.75 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=68.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++.++|.++...|++++|+.+++++++++|.++.++..
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4578999999999999999999999987765 4556889999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 213 l~~~~~~ 219 (258)
T 3uq3_A 213 KATAQIA 219 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888753
No 77
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.40 E-value=4e-12 Score=72.18 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=67.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHH-HHHhcCH--HHHHHHHHHHHhhCCCChHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHV-NRKLKKY--EEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~ 79 (90)
+..+|.++...|++++|+.+|++++++.|.. ...+.++|.+ +...|++ ++|+.+++++++++|.++.+
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 117 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQLRGEN---------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHH
Confidence 5678999999999999999999999988765 4455889999 7889998 99999999999999999999
Q ss_pred HHHHHHHHh
Q psy8498 80 FCCIVVKEG 88 (90)
Q Consensus 80 ~~~l~~~~~ 88 (90)
+..+|.++.
T Consensus 118 ~~~la~~~~ 126 (177)
T 2e2e_A 118 LMLLASDAF 126 (177)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888775
No 78
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.39 E-value=1.8e-12 Score=82.16 Aligned_cols=78 Identities=21% Similarity=0.125 Sum_probs=70.7
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.|+|.++...|+|++|+.++++++++.|.. ..+++++|.++..+|++++|+.+|+++++++|.+..++.
T Consensus 275 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~ 345 (370)
T 1ihg_A 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCchh---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 35789999999999999999999999987755 566799999999999999999999999999999999988
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
.++.++.
T Consensus 346 ~l~~~~~ 352 (370)
T 1ihg_A 346 ELLKVKQ 352 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=4.7e-12 Score=79.47 Aligned_cols=84 Identities=14% Similarity=0.026 Sum_probs=70.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh-----hCCCCh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV-----VAPMKA 77 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~~~~~ 77 (90)
+.++|.+|...|++++|+++|++++++.+..+.. .....+++++|.++..+|++++|++++++++. .+|..+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 5689999999999999999999999998876443 23355679999999999999999999999998 566667
Q ss_pred HHHHHHHHHHhc
Q psy8498 78 STFCCIVVKEGV 89 (90)
Q Consensus 78 ~~~~~l~~~~~~ 89 (90)
.++.++|.++..
T Consensus 262 ~~~~~la~~~~~ 273 (378)
T 3q15_A 262 KVLFGLSWTLCK 273 (378)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788888888753
No 80
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.6e-12 Score=69.78 Aligned_cols=80 Identities=16% Similarity=0.019 Sum_probs=69.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|..+...|++++|+.+|+++++..|.. .....++.++|.++...|++++|+.+++++++++|.++.++..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATP------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 5678999999999999999999999876542 1124467999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 105 ~a~~~~ 110 (148)
T 2dba_A 105 RSQALE 110 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 81
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.38 E-value=6.2e-12 Score=78.03 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=71.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+.+|+++++++|.++.++..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 138 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD---------AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA 138 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 6788999999999999999999999997765 4556999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 139 l~~~~~~ 145 (365)
T 4eqf_A 139 LAVSYTN 145 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9988753
No 82
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.38 E-value=3.8e-12 Score=67.91 Aligned_cols=64 Identities=13% Similarity=-0.021 Sum_probs=58.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
+.++|.++...|++++|+.+|++++++.|.. ...+.++|.++..+|++++|+.+|++++++.|.
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTY---------SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5689999999999999999999999997765 445699999999999999999999999999874
No 83
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.37 E-value=1.8e-12 Score=81.09 Aligned_cols=87 Identities=15% Similarity=-0.052 Sum_probs=71.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC---Cc-----chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG---EI-----IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
+.++|..+...|+|++|+.+|++++++.|.... .. .......+++++|.++.++|++++|+.+|+++++++|
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 261 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE 261 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 567899999999999999999999998776510 00 0000113679999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhc
Q psy8498 75 MKASTFCCIVVKEGV 89 (90)
Q Consensus 75 ~~~~~~~~l~~~~~~ 89 (90)
.++.+++++|.++..
T Consensus 262 ~~~~a~~~lg~a~~~ 276 (338)
T 2if4_A 262 KNPKALFRRGKAKAE 276 (338)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998864
No 84
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.37 E-value=7.1e-12 Score=76.15 Aligned_cols=86 Identities=49% Similarity=0.804 Sum_probs=70.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..+..+.......+..++.++|.++...|++++|+.+++++++++|.++.++..
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 275 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSA 275 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHH
Confidence 56789999999999999999999999987764432222234456889999999999999999999999999988888888
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 276 la~~~~ 281 (330)
T 3hym_B 276 IGYIHS 281 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 85
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.37 E-value=1.6e-11 Score=66.10 Aligned_cols=77 Identities=18% Similarity=0.025 Sum_probs=65.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.... .+..+..+|.++..+|++++|+.+|++++...|+++.+...
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK------AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 567899999999999999999999998776521 24456999999999999999999999999999988776554
Q ss_pred HHH
Q psy8498 83 IVV 85 (90)
Q Consensus 83 l~~ 85 (90)
...
T Consensus 116 ~~~ 118 (129)
T 2xev_A 116 QER 118 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 86
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.36 E-value=3e-12 Score=76.38 Aligned_cols=78 Identities=10% Similarity=-0.015 Sum_probs=35.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.++|.++...|++++|+.+|+++++ .+.. . .....++..+|.++...|++++|+.+|+++++++|.++.++..+
T Consensus 41 ~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 114 (272)
T 3u4t_A 41 NRRAVCYYELAKYDLAQKDIETYFS-KVNA-T----KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI 114 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-T----TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-h----hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3445555555555555555555554 2211 0 11122234455555555555555555555555555444444444
Q ss_pred HHHH
Q psy8498 84 VVKE 87 (90)
Q Consensus 84 ~~~~ 87 (90)
|.++
T Consensus 115 ~~~~ 118 (272)
T 3u4t_A 115 GSYF 118 (272)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 87
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.36 E-value=1.3e-12 Score=85.08 Aligned_cols=74 Identities=18% Similarity=0.028 Sum_probs=39.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.++|.++...|++++|+.+|++++++.|.. ...++++|.++..+|++++|+++|+++++++|+++.++..+
T Consensus 44 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 114 (477)
T 1wao_1 44 GNRSLAYLRTECYGYALGDATRAIELDKKY---------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 114 (477)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345555555555555555555555554333 33345555555555555555555555555555555555555
Q ss_pred HHH
Q psy8498 84 VVK 86 (90)
Q Consensus 84 ~~~ 86 (90)
+.+
T Consensus 115 ~~~ 117 (477)
T 1wao_1 115 QEC 117 (477)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=5.9e-12 Score=84.88 Aligned_cols=77 Identities=9% Similarity=-0.106 Sum_probs=65.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+..|+++++..|+. ...++++|.++..+|++++|+..|+++++++|+++.++.+
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAERVGWR---------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCcch---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 4577888999999999999999999987766 4556889999999999999999999999999988888888
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 507 lg~~~~ 512 (681)
T 2pzi_A 507 LAATAE 512 (681)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.35 E-value=2.1e-11 Score=65.10 Aligned_cols=76 Identities=24% Similarity=0.240 Sum_probs=39.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ...+..+|.++...|++++|+.++++++...|.++.++..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 74 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHH
Confidence 3455666666666666666666666554332 2223445555555555555555555555555544444444
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
+|.++
T Consensus 75 l~~~~ 79 (136)
T 2fo7_A 75 LGNAY 79 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 90
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.35 E-value=5.6e-12 Score=68.55 Aligned_cols=75 Identities=19% Similarity=0.059 Sum_probs=64.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC-----Ch
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-----KA 77 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~ 77 (90)
+.++|.++...|++++|+.+|++++++.|.. ...+.++|.++..+|++++|+.+|++++.++|+ +.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 116 (137)
T 3q49_B 46 YTNRALCYLKMQQPEQALADCRRALELDGQS---------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCchh---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHH
Confidence 5789999999999999999999999998765 456699999999999999999999999999886 45
Q ss_pred HHHHHHHHH
Q psy8498 78 STFCCIVVK 86 (90)
Q Consensus 78 ~~~~~l~~~ 86 (90)
.....+..+
T Consensus 117 ~~~~~l~~~ 125 (137)
T 3q49_B 117 DIPSALRIA 125 (137)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 91
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.35 E-value=2.1e-12 Score=73.64 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=63.6
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCH----------HHHHHHHHHHHhhCCCChHH
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY----------EEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~ 79 (90)
..+.+.|++|+..|++++++.|.. +..++++|.++..++++ ++|+..|++|++++|+++.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~---------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A 82 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLD---------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHH
Confidence 456788999999999999999987 55569999999999886 59999999999999999999
Q ss_pred HHHHHHHHhc
Q psy8498 80 FCCIVVKEGV 89 (90)
Q Consensus 80 ~~~l~~~~~~ 89 (90)
++++|.+|..
T Consensus 83 ~~~LG~ay~~ 92 (158)
T 1zu2_A 83 VWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999863
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.35 E-value=1.1e-11 Score=73.18 Aligned_cols=80 Identities=6% Similarity=-0.138 Sum_probs=68.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH---H
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS---T 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~ 79 (90)
+.++|..+...|+|++|+..|+++++..|.... ....+..+|.++.++|++++|+..|+++++..|+++. +
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 467899999999999999999999998776522 1345699999999999999999999999999998764 6
Q ss_pred HHHHHHHHh
Q psy8498 80 FCCIVVKEG 88 (90)
Q Consensus 80 ~~~l~~~~~ 88 (90)
++.+|.++.
T Consensus 81 ~~~~g~~~~ 89 (225)
T 2yhc_A 81 MYMRGLTNM 89 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887763
No 93
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.34 E-value=1.2e-11 Score=76.38 Aligned_cols=77 Identities=23% Similarity=0.148 Sum_probs=67.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|++++++.|.. ..++.++|.++...|++++|+.+|+++++++|.++.++..
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 290 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 4678999999999999999999999986655 4456899999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 291 l~~~~~ 296 (368)
T 1fch_A 291 LGISCI 296 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 94
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.34 E-value=1.4e-12 Score=81.62 Aligned_cols=76 Identities=16% Similarity=0.016 Sum_probs=56.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.|+|.++...|+|++|+.+|++++++.|.. ...++++|.++..+|++++|+.+|+++++++|+++.++.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~ 302 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR 302 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 46789999999999999999999999998765 556799999999999999999999999999999988888
Q ss_pred HHHHH
Q psy8498 82 CIVVK 86 (90)
Q Consensus 82 ~l~~~ 86 (90)
.++.+
T Consensus 303 ~L~~l 307 (338)
T 2if4_A 303 ELRAL 307 (338)
T ss_dssp -----
T ss_pred HHHHH
Confidence 87766
No 95
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.6e-11 Score=78.34 Aligned_cols=84 Identities=11% Similarity=-0.035 Sum_probs=70.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc--CHHHHHHHHHHHHhhCCCChHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK--KYEEALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~ 80 (90)
+.|+|.+|..+|++++|+.+|++++++.+....... ...+.++.++|.++.+.| ++++|+++|+++++++|+++.++
T Consensus 97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR-IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC-CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc-hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence 578999999999999999999999999988744321 223556788888887754 79999999999999999999999
Q ss_pred HHHHHHH
Q psy8498 81 CCIVVKE 87 (90)
Q Consensus 81 ~~l~~~~ 87 (90)
..+|.++
T Consensus 176 ~~~~~~~ 182 (472)
T 4g1t_A 176 SGLAIAS 182 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888764
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=2.3e-11 Score=64.98 Aligned_cols=77 Identities=23% Similarity=0.220 Sum_probs=68.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ...+..+|.++...|++++|+.++++++...|.++.++..
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 108 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 4578999999999999999999999886554 4456899999999999999999999999999999999988
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 109 la~~~~ 114 (136)
T 2fo7_A 109 LGNAYY 114 (136)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888775
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.33 E-value=1.4e-11 Score=80.95 Aligned_cols=75 Identities=12% Similarity=-0.027 Sum_probs=40.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.++|.++...|++++|+.+|++++++.|.. ...+.++|.++.++|++++|+++|+++++++|+++.++.++
T Consensus 61 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 131 (568)
T 2vsy_A 61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEH---------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345555555555555555555555554433 23345555555555555555555555555555555555555
Q ss_pred HHHH
Q psy8498 84 VVKE 87 (90)
Q Consensus 84 ~~~~ 87 (90)
|.++
T Consensus 132 ~~~~ 135 (568)
T 2vsy_A 132 LNWR 135 (568)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 98
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.33 E-value=3.5e-12 Score=79.80 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=48.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC-------------C------------cchhhHHHHHHhHHHHHHHhc
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG-------------E------------IIADKWEPLLNNLGHVNRKLK 57 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~------------~~~~~~~~~~~~lg~~~~~~g 57 (90)
+.++|.++...|++++|+.+|+++++..|.... + ...+.....+.++|.++.+.|
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 445666666777777777777776666544300 0 000001334466666666666
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 58 KYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
++++|+++|+++++++|+++.++.++|.++.
T Consensus 354 ~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 354 KLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 6666666666666666666666666666553
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.33 E-value=9e-12 Score=81.92 Aligned_cols=78 Identities=15% Similarity=-0.022 Sum_probs=71.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|++++++.|.. ...+.++|.++..+|++++|+++|+++++++|+++.++.+
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 96 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGH---------PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW 96 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 5688999999999999999999999987765 4566999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 97 la~~~~~ 103 (568)
T 2vsy_A 97 LGHALED 103 (568)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 100
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.33 E-value=8.7e-12 Score=81.22 Aligned_cols=79 Identities=13% Similarity=0.020 Sum_probs=71.8
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
++.++|.++...|+|++|+.+|++++++.|.. ..++.++|.++.++|++++|+++|+++++++|.++.++.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 78 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 35678999999999999999999999997766 556699999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q psy8498 82 CIVVKEGV 89 (90)
Q Consensus 82 ~l~~~~~~ 89 (90)
++|.++..
T Consensus 79 ~lg~~~~~ 86 (477)
T 1wao_1 79 RRAASNMA 86 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998753
No 101
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.32 E-value=1.7e-11 Score=75.78 Aligned_cols=78 Identities=13% Similarity=0.021 Sum_probs=70.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+.+|+++++++|.++.++..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 137 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA 137 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 5688999999999999999999999987655 4566999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 138 l~~~~~~ 144 (368)
T 1fch_A 138 LAVSFTN 144 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 102
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.32 E-value=6.9e-12 Score=76.20 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=70.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|++++++.|.. ..++.++|.++.++|++++|+++|+++++++|+++.++..
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQN---------ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM 309 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCccc---------hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHH
Confidence 5689999999999999999999999997765 3455999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
++.++.
T Consensus 310 l~~~~~ 315 (330)
T 3hym_B 310 LGHCIE 315 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998873
No 103
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=3.5e-11 Score=67.52 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=38.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
++|.++...|++++|+.+|+++++..|.. ...+..+|.++...|++++|++++++++...|.++.++..+|
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPIN---------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHh---------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 34444455555555555555554443322 223355555555666666666666666555555555555555
Q ss_pred HHH
Q psy8498 85 VKE 87 (90)
Q Consensus 85 ~~~ 87 (90)
.++
T Consensus 152 ~~~ 154 (186)
T 3as5_A 152 FSY 154 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 104
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.32 E-value=1.3e-11 Score=81.00 Aligned_cols=85 Identities=13% Similarity=-0.012 Sum_probs=68.7
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK 76 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~ 76 (90)
+++|+|.+|..+|+|++|+.++++++++....-++. +...+..+++||.+|..+|++++|..+|++|+++ .|++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999999988874432 3334667899999999999999999999999976 3555
Q ss_pred hHH---HHHHHHHH
Q psy8498 77 AST---FCCIVVKE 87 (90)
Q Consensus 77 ~~~---~~~l~~~~ 87 (90)
+.+ ...++.++
T Consensus 432 p~~~~~~~~l~~~~ 445 (490)
T 3n71_A 432 PITKDLEAMRMQTE 445 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 544 34555544
No 105
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=8.3e-12 Score=81.02 Aligned_cols=78 Identities=15% Similarity=-0.052 Sum_probs=70.5
Q ss_pred chhhHHHHHHhh--------CCHHHHHHHHHHHHHHHH---hhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 2 DLDNVELSSDKS--------FSYTVAENCFMEALSKVK---QLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 2 ~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
.+.++|.++... |++++|+.+|++++++.| .. +..++++|.++..+|++++|+.+|++++
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN---------PDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357899999999 999999999999999987 44 5566999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHh
Q psy8498 71 VVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~ 88 (90)
+++|+++.++..++.++.
T Consensus 286 ~l~p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 286 ALDPAWPEPQQREQQLLE 303 (474)
T ss_dssp HHCTTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 999999999999888764
No 106
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.32 E-value=1.6e-11 Score=75.36 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=42.1
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
+.+++++|.++.++|++++|...++++++++|+++.++.++|.++..
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44568899999999999999999999999999999999999987653
No 107
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.31 E-value=1.7e-11 Score=79.37 Aligned_cols=77 Identities=8% Similarity=-0.085 Sum_probs=65.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK 76 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~ 76 (90)
+++|+|.+|..+|+|++|+.++++++++....-++. +...+..++++|.+|..+|++++|+.+|++|+++ .|++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 478999999999999999999999999998874432 3344667899999999999999999999999986 3566
Q ss_pred hHH
Q psy8498 77 AST 79 (90)
Q Consensus 77 ~~~ 79 (90)
+.+
T Consensus 421 p~~ 423 (433)
T 3qww_A 421 PYI 423 (433)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 108
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.31 E-value=2e-11 Score=72.82 Aligned_cols=77 Identities=8% Similarity=0.033 Sum_probs=66.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++.++|.++...|++++|+.+|+++++++|.++.++..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 147 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE 147 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCccc---------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 4678999999999999999999999987765 3455889999999999999999999999999999999999
Q ss_pred HH-HHHh
Q psy8498 83 IV-VKEG 88 (90)
Q Consensus 83 l~-~~~~ 88 (90)
+| .++.
T Consensus 148 l~~~~~~ 154 (272)
T 3u4t_A 148 LGQAYYY 154 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 98 6654
No 109
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.31 E-value=3.2e-11 Score=66.25 Aligned_cols=83 Identities=19% Similarity=0.147 Sum_probs=61.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 76 (90)
+.++|.++...|++++|+.+|++++++.+..++. .....++.++|.++...|++++|++++++++++.+..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 5678888888899999999999999888876443 2223466888888888888888888888888775432
Q ss_pred hHHHHHHHHHHh
Q psy8498 77 ASTFCCIVVKEG 88 (90)
Q Consensus 77 ~~~~~~l~~~~~ 88 (90)
..++.++|.++.
T Consensus 89 ~~~~~~l~~~~~ 100 (164)
T 3ro3_A 89 AQSCYSLGNTYT 100 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445666666654
No 110
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.31 E-value=1.7e-11 Score=79.22 Aligned_cols=86 Identities=7% Similarity=-0.092 Sum_probs=70.0
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK 76 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~ 76 (90)
+++|+|.+|..+|+|++|+.++++++++....-++. +......++++|.+|..+|++++|+.+|++|+++ -|++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 478999999999999999999999999998864332 3344667899999999999999999999999976 3555
Q ss_pred hHH---HHHHHHHHh
Q psy8498 77 AST---FCCIVVKEG 88 (90)
Q Consensus 77 ~~~---~~~l~~~~~ 88 (90)
+.+ +.+++.+..
T Consensus 410 p~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 410 SLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 544 456666654
No 111
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.31 E-value=1.8e-11 Score=76.61 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=46.0
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.++|.++...|++++|+..|++++++.|.. +.++.++|.++.+.|++++|+++|+++++++|.++.++..+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHF---------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 455666666666666666666666654433 23346666666666666666666666666666666666666
Q ss_pred HHHHh
Q psy8498 84 VVKEG 88 (90)
Q Consensus 84 ~~~~~ 88 (90)
|.++.
T Consensus 312 ~~~~~ 316 (388)
T 1w3b_A 312 ANIKR 316 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 112
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.31 E-value=3.7e-11 Score=69.43 Aligned_cols=77 Identities=18% Similarity=0.060 Sum_probs=60.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+++++++++.+|.++.++..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKN---------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 4567888888888888888888888876654 3445778888888888888888888888888887777777
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 82 l~~~~~ 87 (225)
T 2vq2_A 82 YGWFLC 87 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 113
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=4.2e-11 Score=67.19 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=64.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|.++...|++++|+.+++++++..|.. ..++..+|.++...|++++|.+++++++...|.++.++..
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 115 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADAPDN---------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR 115 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHH
Confidence 4567888889999999999999998886544 4456889999999999999999999999999988888888
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 116 ~a~~~~ 121 (186)
T 3as5_A 116 LGVALD 121 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.31 E-value=1.3e-11 Score=75.94 Aligned_cols=81 Identities=11% Similarity=0.089 Sum_probs=59.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh-----
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA----- 77 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----- 77 (90)
+.++|.+|.. |++++|+.+|++++++.+..+.. .....+++++|.++.++|++++|+.+|++++.+.|.+.
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL---RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 5678888888 88888888888888888775332 22245678889999999999999999999888765332
Q ss_pred -HHHHHHHHHH
Q psy8498 78 -STFCCIVVKE 87 (90)
Q Consensus 78 -~~~~~l~~~~ 87 (90)
.++.++|.++
T Consensus 195 ~~~~~~~g~~~ 205 (307)
T 2ifu_A 195 YKKCIAQVLVQ 205 (307)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 2455566555
No 115
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=2.2e-11 Score=76.34 Aligned_cols=85 Identities=14% Similarity=0.027 Sum_probs=71.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 76 (90)
+.++|.+|...|++++|+.++++|+++.+..+.. ......+++++|.++..+|++++|+.+|++++++.+..
T Consensus 146 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 5689999999999999999999999999887542 23335678999999999999999999999999886533
Q ss_pred hHHHHHHHHHHhc
Q psy8498 77 ASTFCCIVVKEGV 89 (90)
Q Consensus 77 ~~~~~~l~~~~~~ 89 (90)
+.++.++|.++..
T Consensus 224 ~~~~~~lg~~y~~ 236 (383)
T 3ulq_A 224 GRTLYNIGLCKNS 236 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2478889988753
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.30 E-value=6.6e-12 Score=77.24 Aligned_cols=84 Identities=13% Similarity=0.002 Sum_probs=66.8
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK----- 76 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 76 (90)
.+.++|.+|...|++++|+.+|++++++.+..+.. .....++.++|.+|.. |++++|+.+|++++.+.|..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP---DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH---HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 35788999999999999999999999998776443 2234567899999988 99999999999999887633
Q ss_pred -hHHHHHHHHHHhc
Q psy8498 77 -ASTFCCIVVKEGV 89 (90)
Q Consensus 77 -~~~~~~l~~~~~~ 89 (90)
..++.++|.++..
T Consensus 154 ~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 154 AAELIGKASRLLVR 167 (307)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 4567788887753
No 117
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.30 E-value=3.2e-12 Score=86.15 Aligned_cols=77 Identities=12% Similarity=-0.030 Sum_probs=54.4
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.++|.++...|++++|+..|++++++.|+. ...++++|.++.++|++++ +++|+++++++|+++.+++
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~ 538 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF 538 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH
Confidence 35688999999999999999999999998876 2233566666666666666 6666666666666666666
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
++|.++.
T Consensus 539 ~lg~~~~ 545 (681)
T 2pzi_A 539 GLARARS 545 (681)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665553
No 118
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=4e-11 Score=70.60 Aligned_cols=87 Identities=8% Similarity=0.012 Sum_probs=69.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC-----------------CcchhhHHHHHHhHHHHHHHhcCHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGG-----------------EIIADKWEPLLNNLGHVNRKLKKYEEALEF 65 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 65 (90)
+.++|.++...|++++|+.+|++++++.|.... .........++..+|.++...|++++|+.+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 567899999999999999999999995432100 000112245679999999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 66 HKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 66 ~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
|++++.++|.++.++..+|.++..
T Consensus 162 ~~~a~~~~~~~~~~~~~l~~~~~~ 185 (258)
T 3uq3_A 162 YTEMIKRAPEDARGYSNRAAALAK 185 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 119
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.29 E-value=3.2e-11 Score=73.77 Aligned_cols=76 Identities=12% Similarity=-0.059 Sum_probs=52.3
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
.++|.++...|++++|+.+|+++++..|.. +.++..+|.++...|++++|+.+|+++++++|+++.+...+
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQMEPDN---------VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 346677777777777777777777765443 33457777777777777777777777777777777776666
Q ss_pred HHHHh
Q psy8498 84 VVKEG 88 (90)
Q Consensus 84 ~~~~~ 88 (90)
+.++.
T Consensus 347 ~~~~~ 351 (359)
T 3ieg_A 347 EKAQR 351 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 120
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=2.5e-11 Score=72.66 Aligned_cols=72 Identities=8% Similarity=-0.102 Sum_probs=62.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH--------hcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK--------LKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~~ 74 (90)
+.++|.++...|++++|+..|+++++..|.... ....++.+|.++.. +|++++|+..|++++...|
T Consensus 55 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 55 QFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 567899999999999999999999999886522 24567999999999 9999999999999999999
Q ss_pred CChHHH
Q psy8498 75 MKASTF 80 (90)
Q Consensus 75 ~~~~~~ 80 (90)
+++.+.
T Consensus 129 ~~~~~~ 134 (261)
T 3qky_A 129 NHELVD 134 (261)
T ss_dssp TCTTHH
T ss_pred CchhHH
Confidence 876665
No 121
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.29 E-value=4.6e-11 Score=73.06 Aligned_cols=77 Identities=9% Similarity=-0.212 Sum_probs=67.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|.++...|++++|+.+|+++++..|.. +.++..+|.++...|++++|+.+++++++++|.++.++..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDN---------YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 5678999999999999999999999987665 4456889999999999999999999999999999988888
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 77 l~~~~~ 82 (359)
T 3ieg_A 77 RGHLLL 82 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 122
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.28 E-value=9.4e-12 Score=80.19 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=70.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|..+...|++++|+.+|+++++..|.. +.++.++|.++..+|++++|++.|+++++++|.++.++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 98 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---------PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHH
Confidence 5678999999999999999999999998766 5566999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 99 la~~~~ 104 (537)
T 3fp2_A 99 RASANE 104 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 123
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=1.2e-11 Score=80.32 Aligned_cols=79 Identities=15% Similarity=-0.058 Sum_probs=71.8
Q ss_pred chhhHHHHHHhh---------CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh--------cCHHHHHH
Q psy8498 2 DLDNVELSSDKS---------FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL--------KKYEEALE 64 (90)
Q Consensus 2 ~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~ 64 (90)
.+.++|.++... |++++|+.+|++++++.|.. ...++++|.++..+ |++++|+.
T Consensus 172 ~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD---------GRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 356889999999 99999999999999998776 44569999999999 99999999
Q ss_pred HHHHHHhhCC---CChHHHHHHHHHHhc
Q psy8498 65 FHKQALVVAP---MKASTFCCIVVKEGV 89 (90)
Q Consensus 65 ~~~~al~~~~---~~~~~~~~l~~~~~~ 89 (90)
+|+++++++| .++.++.++|.++..
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~ 270 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKY 270 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence 9999999999 999999999998864
No 124
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.27 E-value=7.1e-11 Score=69.16 Aligned_cols=75 Identities=16% Similarity=0.056 Sum_probs=37.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..+|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+++++++++..|.++.++..+
T Consensus 61 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 131 (243)
T 2q7f_A 61 INFANLLSSVNELERALAFYDKALELDSSA---------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345555555555555555555555554332 22334455555555555555555555555555444444444
Q ss_pred HHHH
Q psy8498 84 VVKE 87 (90)
Q Consensus 84 ~~~~ 87 (90)
|.++
T Consensus 132 a~~~ 135 (243)
T 2q7f_A 132 GTVL 135 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 125
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.27 E-value=6.7e-11 Score=71.75 Aligned_cols=78 Identities=19% Similarity=0.147 Sum_probs=68.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+.+++++++..|.++.++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 245 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDD---------AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4678999999999999999999999987654 4456899999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 246 l~~~~~~ 252 (327)
T 3cv0_A 246 MAVSYSN 252 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888753
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.27 E-value=2.8e-11 Score=70.11 Aligned_cols=75 Identities=15% Similarity=0.039 Sum_probs=66.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|++++. .. +.+++++|.++...|++++|+.+|++++.++|.++.++.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~------~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 76 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD------PH------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS------CC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 46789999999999999999999951 11 3466999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 77 lg~~~~~ 83 (213)
T 1hh8_A 77 RGMLYYQ 83 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 127
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.26 E-value=6.6e-11 Score=69.28 Aligned_cols=73 Identities=19% Similarity=0.098 Sum_probs=33.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIV 84 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 84 (90)
++|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+.+++++++..|.++.++..+|
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMEN---------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCS---------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 44555555555555555555555543322 122244444444444444444444444444444444444444
Q ss_pred HH
Q psy8498 85 VK 86 (90)
Q Consensus 85 ~~ 86 (90)
.+
T Consensus 167 ~~ 168 (243)
T 2q7f_A 167 MC 168 (243)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 128
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.26 E-value=3.4e-11 Score=78.61 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=70.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+..|+++++..|.. ..++..+|.+|.+.|++++|.++|+++++++|+++.++..
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTND---------ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 5678999999999999999999999987654 4566999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
++.++.
T Consensus 590 l~~~~~ 595 (597)
T 2xpi_A 590 LKRALE 595 (597)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 998875
No 129
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.26 E-value=1.6e-10 Score=75.47 Aligned_cols=85 Identities=27% Similarity=0.357 Sum_probs=73.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+++|+++++..|+.+.. ...+..++..+|.++.+.|++++|++.|+++++++|.++.++..
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc--hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 5678999999999999999999999998875433 12224466999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 556 l~~~~~~ 562 (597)
T 2xpi_A 556 IALVYLH 562 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 130
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=5.5e-11 Score=70.62 Aligned_cols=86 Identities=24% Similarity=0.179 Sum_probs=70.7
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh--------C
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV--------A 73 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 73 (90)
.+.++|.++...|++++|+.+|++++++.+...+.. ......++.++|.++...|++++|+.++++++++ .
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 357899999999999999999999999976652221 1222556799999999999999999999999998 6
Q ss_pred CCChHHHHHHHHHHh
Q psy8498 74 PMKASTFCCIVVKEG 88 (90)
Q Consensus 74 ~~~~~~~~~l~~~~~ 88 (90)
|....++..+|.++.
T Consensus 166 ~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 166 PNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666778888888874
No 131
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=3.1e-11 Score=72.24 Aligned_cols=80 Identities=9% Similarity=-0.112 Sum_probs=68.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC---hHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---AST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~ 79 (90)
+.+.|..+...|+|++|+..|+++++..|... ..+.+++.+|.++.++|++++|+..|++++...|++ +.+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE------WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 46789999999999999999999999877642 224567999999999999999999999999998854 567
Q ss_pred HHHHHHHHh
Q psy8498 80 FCCIVVKEG 88 (90)
Q Consensus 80 ~~~l~~~~~ 88 (90)
++.+|.++.
T Consensus 92 ~~~lg~~~~ 100 (261)
T 3qky_A 92 EYERAMCYY 100 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888874
No 132
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.25 E-value=9.1e-11 Score=74.25 Aligned_cols=78 Identities=9% Similarity=-0.223 Sum_probs=65.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|..+...|++++|+.+|+++++..|.. ..+++.+|.++...|++++|+.+|+++++.+|.++.++..
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDN---------YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4577888999999999999999999876654 4456889999999999999999999999999988888888
Q ss_pred HHHHHhc
Q psy8498 83 IVVKEGV 89 (90)
Q Consensus 83 l~~~~~~ 89 (90)
+|.++..
T Consensus 100 l~~~~~~ 106 (450)
T 2y4t_A 100 RGHLLLK 106 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887753
No 133
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=8.1e-11 Score=69.89 Aligned_cols=87 Identities=24% Similarity=0.197 Sum_probs=70.8
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh--------C
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV--------A 73 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 73 (90)
++.++|.++...|++++|+.+|++++++.....+.. ......++.++|.++..+|++++|+++|++++.+ +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 356899999999999999999999999986652111 1223556799999999999999999999999988 4
Q ss_pred CCChHHHHHHHHHHhc
Q psy8498 74 PMKASTFCCIVVKEGV 89 (90)
Q Consensus 74 ~~~~~~~~~l~~~~~~ 89 (90)
|....++.++|.++..
T Consensus 124 ~~~~~~~~~la~~~~~ 139 (283)
T 3edt_B 124 PDVAKQLNNLALLCQN 139 (283)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5667778889988753
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.24 E-value=1.2e-10 Score=66.74 Aligned_cols=84 Identities=11% Similarity=0.057 Sum_probs=68.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh---CC----
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV---AP---- 74 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~---- 74 (90)
.+.++|.++...|++++|+.+|++++++.+..+.. .....++.++|.++...|++++|++++++++.+ .+
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH---TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 35688999999999999999999999998877543 233556799999999999999999999999988 33
Q ss_pred CChHHHHHHHHHHh
Q psy8498 75 MKASTFCCIVVKEG 88 (90)
Q Consensus 75 ~~~~~~~~l~~~~~ 88 (90)
....++.++|.++.
T Consensus 105 ~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 105 AASANAYEVATVAL 118 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 22455777777764
No 135
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.24 E-value=8.4e-11 Score=75.20 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=69.6
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+...|..+...|+|++|+.+|+++++..|+ +..+..+|.++.+.|++++|+.+++++++++|.++.++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 77 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKED----------PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHH
Confidence 3568899999999999999999999998752 345699999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q psy8498 82 CIVVKEGV 89 (90)
Q Consensus 82 ~l~~~~~~ 89 (90)
.+|.++..
T Consensus 78 ~l~~~~~~ 85 (514)
T 2gw1_A 78 RRASANEG 85 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 136
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.24 E-value=6.3e-11 Score=71.84 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=69.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC-------
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM------- 75 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------- 75 (90)
+.++|.++...|++++|+.+|+++++..|.. ..++..+|.++..+|++++|+.++++++.+.|.
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDINPGY---------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence 5688999999999999999999999987665 445699999999999999999999999999998
Q ss_pred -----ChHHHHHHHHHHhc
Q psy8498 76 -----KASTFCCIVVKEGV 89 (90)
Q Consensus 76 -----~~~~~~~l~~~~~~ 89 (90)
++.++..+|.++..
T Consensus 280 ~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHh
Confidence 78888888888753
No 137
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.24 E-value=1.2e-10 Score=63.86 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=67.2
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC------
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM------ 75 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------ 75 (90)
.+.++|.++...|++++|+.+|++++++.+..++. .....++.++|.++...|++++|+.++++++.+.+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 127 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence 35689999999999999999999999999887443 223456799999999999999999999999987431
Q ss_pred ChHHHHHHHHHHh
Q psy8498 76 KASTFCCIVVKEG 88 (90)
Q Consensus 76 ~~~~~~~l~~~~~ 88 (90)
.+.++..+|.++.
T Consensus 128 ~~~~~~~la~~~~ 140 (164)
T 3ro3_A 128 EGRACWSLGNAYT 140 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2345666776653
No 138
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.24 E-value=6.2e-11 Score=70.04 Aligned_cols=75 Identities=15% Similarity=-0.117 Sum_probs=38.1
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
..+|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+++++++++.+|.++.++..+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSS---------ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 344555555555555555555555543332 22334555555555555555555555555555555555554
Q ss_pred HHHH
Q psy8498 84 VVKE 87 (90)
Q Consensus 84 ~~~~ 87 (90)
|.++
T Consensus 112 a~~~ 115 (252)
T 2ho1_A 112 GGFL 115 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 139
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.23 E-value=1.1e-10 Score=69.52 Aligned_cols=73 Identities=10% Similarity=-0.083 Sum_probs=63.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.+|++++++.|.. ..++..+|.++...|++++|+.+|+++++++|.++.....
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW 150 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCccc---------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHH
Confidence 5688999999999999999999999997765 3456999999999999999999999999999988755444
Q ss_pred HH
Q psy8498 83 IV 84 (90)
Q Consensus 83 l~ 84 (90)
.+
T Consensus 151 ~~ 152 (275)
T 1xnf_A 151 LY 152 (275)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 140
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.22 E-value=1.1e-10 Score=73.88 Aligned_cols=75 Identities=12% Similarity=-0.066 Sum_probs=55.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+.++++++++.|.. ..++..+|.++...|++++|+.+|+++++++|+++.++..
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 368 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDN---------VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence 3456777777777777777777777765544 3445778888888888888888888888888888777777
Q ss_pred HHHH
Q psy8498 83 IVVK 86 (90)
Q Consensus 83 l~~~ 86 (90)
++.+
T Consensus 369 l~~~ 372 (450)
T 2y4t_A 369 LEKA 372 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.21 E-value=2e-10 Score=65.77 Aligned_cols=85 Identities=16% Similarity=0.150 Sum_probs=67.0
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC--C---
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM--K--- 76 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~--- 76 (90)
.+.++|.++...|++++|+.+|++++++.+..++. ......++.++|.++..+|++++|+.++++++.+.+. +
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPED--PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 35789999999999999999999999998876533 1123456799999999999999999999999976431 2
Q ss_pred -hHHHHHHHHHHh
Q psy8498 77 -ASTFCCIVVKEG 88 (90)
Q Consensus 77 -~~~~~~l~~~~~ 88 (90)
..++..+|.++.
T Consensus 146 ~~~~~~~la~~~~ 158 (203)
T 3gw4_A 146 IACAFRGLGDLAQ 158 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 223466776664
No 142
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.20 E-value=2.1e-10 Score=67.71 Aligned_cols=75 Identities=20% Similarity=0.142 Sum_probs=35.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHH--HHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALS--KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.++|.++...|++++|+.+|+++++ ..|.. ...+..+|.++...|++++|+.+++++++..|.++.++.
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPER---------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 3445555555555555555555554 11111 223344555555555555555555555555554444444
Q ss_pred HHHHHH
Q psy8498 82 CIVVKE 87 (90)
Q Consensus 82 ~l~~~~ 87 (90)
.+|.++
T Consensus 180 ~la~~~ 185 (252)
T 2ho1_A 180 EMADLL 185 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 143
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.20 E-value=2.1e-10 Score=66.22 Aligned_cols=77 Identities=16% Similarity=0.020 Sum_probs=43.0
Q ss_pred hhHHHHHHhh-CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 4 DNVELSSDKS-FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 4 ~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
.++|.++... |++++|+.+|+++++ .+.... ...++..+|.++...|++++|+.+++++++..|.++.++..
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 152 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALA-DPTYPT------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSC------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH
Confidence 4556666666 666666666666665 221111 02234556666666666666666666666666665555555
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
+|.++
T Consensus 153 la~~~ 157 (225)
T 2vq2_A 153 LARTK 157 (225)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 144
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=1.8e-10 Score=72.24 Aligned_cols=84 Identities=17% Similarity=0.014 Sum_probs=69.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC------CC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------MK 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~ 76 (90)
+.++|.+|...|++++|+.++++++++.+..+.. ....+.+++++|.++..+|++++|+++|++++++.+ ..
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5689999999999999999999999999886442 123356789999999999999999999999998743 12
Q ss_pred hHHHHHHHHHHh
Q psy8498 77 ASTFCCIVVKEG 88 (90)
Q Consensus 77 ~~~~~~l~~~~~ 88 (90)
+.++.++|.++.
T Consensus 222 ~~~~~~lg~~y~ 233 (378)
T 3q15_A 222 AISLLNIANSYD 233 (378)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456788888875
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.19 E-value=3.3e-11 Score=62.87 Aligned_cols=66 Identities=12% Similarity=0.003 Sum_probs=58.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHh--hCCCcchhhHHHHHHhHHHHHHHh-cCHHHHHHHHHHHHhhCCCCh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQ--LGGEIIADKWEPLLNNLGHVNRKL-KKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~ 77 (90)
+.++|.++...|++++|+.+|+++++..|. . ..++.++|.++... |++++|++++++++...|.++
T Consensus 43 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 43 WLMKGKALYNLERYEEAVDCYNYVINVIEDEYN---------KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC---------HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccch---------HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 567899999999999999999999998765 3 44569999999999 999999999999999988653
No 146
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.16 E-value=2.9e-10 Score=70.73 Aligned_cols=83 Identities=19% Similarity=0.154 Sum_probs=60.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 76 (90)
+.++|.++...|++++|+.+|++++++.+..+.. .....++.++|.++..+|++++|+.++++++.+.|..
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 5677888888888888888888888888776432 2223456788888888888888888888888776543
Q ss_pred hHHHHHHHHHHh
Q psy8498 77 ASTFCCIVVKEG 88 (90)
Q Consensus 77 ~~~~~~l~~~~~ 88 (90)
..++..+|.++.
T Consensus 267 ~~~~~~la~~~~ 278 (406)
T 3sf4_A 267 AQSCYSLGNTYT 278 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666666654
No 147
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.15 E-value=3.1e-10 Score=73.11 Aligned_cols=77 Identities=14% Similarity=-0.034 Sum_probs=51.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|+..|+++++..|.. ...+..+|.++...|++++|+.+++++++..|.++.++..
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 383 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 3456667777777777777777777665543 2234667777777777777777777777777777777777
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.++.
T Consensus 384 l~~~~~ 389 (537)
T 3fp2_A 384 FAEILT 389 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 148
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=1.3e-10 Score=66.11 Aligned_cols=70 Identities=11% Similarity=-0.096 Sum_probs=58.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+...|..+...|++++|+..|+++++..|+. ...+..+|.++...|++++|+..+++++..+| ++.....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~ 78 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR---------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSL 78 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS---------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHH
Confidence 4578899999999999999999999999887 55568999999999999999998888888877 6554433
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.14 E-value=4.5e-10 Score=63.60 Aligned_cols=69 Identities=10% Similarity=0.018 Sum_probs=60.5
Q ss_pred hhhHHHH-HHhhCCH--HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498 3 LDNVELS-SDKSFSY--TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 3 ~~~l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (90)
+.++|.+ +...|++ ++|+.+|+++++..|.. ...+.++|.++...|++++|+.+|+++++++|.++..
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNE---------ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 4678888 8899999 99999999999997765 4556999999999999999999999999999977554
Q ss_pred H
Q psy8498 80 F 80 (90)
Q Consensus 80 ~ 80 (90)
.
T Consensus 152 ~ 152 (177)
T 2e2e_A 152 T 152 (177)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.14 E-value=2.7e-10 Score=69.92 Aligned_cols=69 Identities=20% Similarity=0.080 Sum_probs=61.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHH-HHHHHHHHHhhCCCChHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE-ALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~ 80 (90)
+.++|.++...|++++|+..|+++++..|.. +.++.++|.++...|++++ +.++++++++++|+++.+.
T Consensus 203 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGH---------PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 5689999999999999999999999998877 5566999999999999976 5789999999999988764
No 151
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.13 E-value=1e-10 Score=62.27 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
++|+..|+++++..|.. ...++++|.++...|++++|+.+|+++++++|.++.++..+|.++.
T Consensus 2 ~~a~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN---------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CCHHHHHHHHHTTTCCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 35788999999987765 4566999999999999999999999999999999999999998875
No 152
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.13 E-value=6.2e-10 Score=67.83 Aligned_cols=69 Identities=16% Similarity=-0.007 Sum_probs=59.7
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhC
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVA 73 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 73 (90)
.+.|+|.+|..+|+|++|+.++++++++.+..+.. ...+.+++++|.++.++| .+++|+++|++|+.+.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM---ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC---TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH---HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999887443 223567799999999999 5799999999999774
No 153
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=5.8e-10 Score=67.16 Aligned_cols=85 Identities=26% Similarity=0.197 Sum_probs=68.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh--------CC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV--------AP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~ 74 (90)
+.++|.++...|++++|+.+|++++++.....+.. ......++.++|.++...|++++|++++++++.+ .|
T Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 56889999999999999999999999975541110 1222456799999999999999999999999998 56
Q ss_pred CChHHHHHHHHHHh
Q psy8498 75 MKASTFCCIVVKEG 88 (90)
Q Consensus 75 ~~~~~~~~l~~~~~ 88 (90)
....++..+|.++.
T Consensus 193 ~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 193 NVAKTKNNLASCYL 206 (311)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66677888888764
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=4.5e-11 Score=72.93 Aligned_cols=65 Identities=22% Similarity=0.081 Sum_probs=59.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
+.++|.++...|++++|+..|++++++.|.. ...++++|.++..+|++++|+.+|+++++++|++
T Consensus 41 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 41 YTNRALCYLKMQQPEQALADCRRALELDGQS---------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 5789999999999999999999999987765 5567999999999999999999999999998855
No 155
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.10 E-value=8.9e-10 Score=68.52 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=64.4
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK----- 76 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 76 (90)
.+.++|.++...|++++|+.+|++++++.+..+.. .....++.++|.++...|++++|+.++++++.+.+..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 305 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc---hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH
Confidence 35678999999999999999999999988876443 2224466888999999999999999999988875432
Q ss_pred -hHHHHHHHHHHh
Q psy8498 77 -ASTFCCIVVKEG 88 (90)
Q Consensus 77 -~~~~~~l~~~~~ 88 (90)
+.++..+|.++.
T Consensus 306 ~~~~~~~la~~~~ 318 (406)
T 3sf4_A 306 EGRACWSLGNAYT 318 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 445666776654
No 156
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.10 E-value=1.1e-09 Score=66.17 Aligned_cols=83 Identities=19% Similarity=0.154 Sum_probs=58.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 76 (90)
+.++|.++...|++++|+.+|++++++.+..+.. .....++.++|.++...|++++|+.++++++.+.+..
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 4577888888888888888888888887776432 2223356778888888888888888888888765533
Q ss_pred hHHHHHHHHHHh
Q psy8498 77 ASTFCCIVVKEG 88 (90)
Q Consensus 77 ~~~~~~l~~~~~ 88 (90)
+.++..+|.++.
T Consensus 263 ~~~~~~la~~~~ 274 (338)
T 3ro2_A 263 AQSCYSLGNTYT 274 (338)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445556666553
No 157
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.09 E-value=8.2e-10 Score=69.24 Aligned_cols=83 Identities=12% Similarity=0.043 Sum_probs=66.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh------CCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV------APMK 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~~ 76 (90)
+.++|.++...|++++|+.+|++++++.+..++. .....++..+|.++...|++++|+.+|++++.+ .|..
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 165 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR---LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE 165 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence 5678999999999999999999999987665432 223556789999999999999999999999988 3445
Q ss_pred hHHHHHHHHHHh
Q psy8498 77 ASTFCCIVVKEG 88 (90)
Q Consensus 77 ~~~~~~l~~~~~ 88 (90)
..++..+|.++.
T Consensus 166 ~~~~~~l~~~~~ 177 (411)
T 4a1s_A 166 GRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 567778887764
No 158
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.09 E-value=4.2e-10 Score=70.58 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=68.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh------CCCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV------APMK 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~~ 76 (90)
+..+|..+...|++++|+.+|+++++..|.. ......++..+|.++...|++++|+.+|++++++ .|..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTED-----LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccC-----hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4578999999999999999999999985543 3333456799999999999999999999999988 4556
Q ss_pred hHHHHHHHHHHhc
Q psy8498 77 ASTFCCIVVKEGV 89 (90)
Q Consensus 77 ~~~~~~l~~~~~~ 89 (90)
..++..+|.++..
T Consensus 126 ~~~~~~l~~~~~~ 138 (411)
T 4a1s_A 126 AKSSGNLGNTLKV 138 (411)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6778888887753
No 159
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=1.4e-09 Score=65.41 Aligned_cols=87 Identities=26% Similarity=0.321 Sum_probs=70.0
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC--------
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-------- 73 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------- 73 (90)
.+.++|.++...|++++|+.+|++++++.+...+.. ......++..+|.++...|++++|+.++++++.+.
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 357899999999999999999999999877663111 12234567999999999999999999999999873
Q ss_pred CCChHHHHHHHHHHhc
Q psy8498 74 PMKASTFCCIVVKEGV 89 (90)
Q Consensus 74 ~~~~~~~~~l~~~~~~ 89 (90)
|....++..+|.++..
T Consensus 108 ~~~~~~~~~l~~~~~~ 123 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGK 123 (311)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4556778888887753
No 160
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.08 E-value=1.1e-09 Score=66.66 Aligned_cols=83 Identities=8% Similarity=-0.100 Sum_probs=65.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh---CCCCh---
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV---APMKA--- 77 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~--- 77 (90)
..+|.++...|++++|+.+|++++++.+...+. .....+++++|.+|..+|++++|+.+|++++++ .|.+.
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 457888999999999999999999876654332 112456799999999999999999999999944 44432
Q ss_pred -HHHHHHHHHHhc
Q psy8498 78 -STFCCIVVKEGV 89 (90)
Q Consensus 78 -~~~~~l~~~~~~ 89 (90)
.++.++|.++..
T Consensus 196 ~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 196 VKVRYNHAKALYL 208 (293)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 578899988753
No 161
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.06 E-value=1.4e-09 Score=65.59 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=65.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC------
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 76 (90)
+.++|.++...|++++|+.++++++++.+..+.. .....++..+|.++...|++++|+.++++++++.|..
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 4578999999999999999999999987776443 2234567899999999999999999999999886533
Q ss_pred hHHHHHHHHHHh
Q psy8498 77 ASTFCCIVVKEG 88 (90)
Q Consensus 77 ~~~~~~l~~~~~ 88 (90)
..++..+|.++.
T Consensus 123 ~~~~~~l~~~~~ 134 (338)
T 3ro2_A 123 ARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 236667777654
No 162
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.1e-09 Score=69.95 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=68.6
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH---hcCHHHHHHHHHHHHhhCCCChHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK---LKKYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~ 79 (90)
+.++|.++...|++++|+.+|+++++..|....... ....+..+|.++.. .|++++|+.++++++.++|.++.+
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV---GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS---CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH---HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 567899999999999999999999999887632210 01245889999999 999999999999999999999988
Q ss_pred HHHHHHHHhc
Q psy8498 80 FCCIVVKEGV 89 (90)
Q Consensus 80 ~~~l~~~~~~ 89 (90)
+..+|.++..
T Consensus 452 ~~~la~~~~~ 461 (514)
T 2gw1_A 452 KIGLAQMKLQ 461 (514)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887753
No 163
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.06 E-value=1.7e-09 Score=70.96 Aligned_cols=81 Identities=15% Similarity=0.008 Sum_probs=65.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC---hH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK---AS 78 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~ 78 (90)
+..+..+|+|++|+..+++++++....-++. +.....+++++|.+|..+|+|++|+.++++++++ .|++ +.
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADT-NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 4457789999999999999999987753332 2334667899999999999999999999999976 3444 45
Q ss_pred HHHHHHHHHh
Q psy8498 79 TFCCIVVKEG 88 (90)
Q Consensus 79 ~~~~l~~~~~ 88 (90)
++.++|.+|.
T Consensus 395 ~l~nLa~~~~ 404 (490)
T 3n71_A 395 AVMRAGLTNW 404 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5789998875
No 164
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.05 E-value=2.6e-09 Score=64.04 Aligned_cols=72 Identities=19% Similarity=0.088 Sum_probs=42.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCChH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 78 (90)
+.++|.++...|++++|+.+|+++++ +.. +..++++|.++.. .|++++|+.+|+++++.. ++.
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~---------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~ 75 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACD--LKE---------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN 75 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TTC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH--CCC---------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH
Confidence 34566666667777777777776666 211 2234556666666 666666666666666553 455
Q ss_pred HHHHHHHHH
Q psy8498 79 TFCCIVVKE 87 (90)
Q Consensus 79 ~~~~l~~~~ 87 (90)
++..+|.++
T Consensus 76 a~~~lg~~~ 84 (273)
T 1ouv_A 76 GCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 165
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=2.4e-09 Score=63.09 Aligned_cols=72 Identities=10% Similarity=-0.036 Sum_probs=60.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH------------------hcCHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK------------------LKKYEEALE 64 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~------------------~g~~~~A~~ 64 (90)
+.++|.++...|++++|+..|+++++..|+... .+..++.+|.++.. +|++++|+.
T Consensus 44 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 44 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------HHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 567899999999999999999999999887622 13355788888876 579999999
Q ss_pred HHHHHHhhCCCChHHH
Q psy8498 65 FHKQALVVAPMKASTF 80 (90)
Q Consensus 65 ~~~~al~~~~~~~~~~ 80 (90)
.|+++++..|+++.+.
T Consensus 118 ~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTT 133 (225)
T ss_dssp HHHHHHTTCTTCTTHH
T ss_pred HHHHHHHHCcCChhHH
Confidence 9999999999876543
No 166
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=1.2e-09 Score=64.04 Aligned_cols=78 Identities=10% Similarity=-0.094 Sum_probs=56.0
Q ss_pred hhhHHHHHHh----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDK----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~ 74 (90)
+.++|.+|.. .+++++|+.+|+++.+..+. ...+..++++|.+|.. .+++++|+.+|+++++. |
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~ 159 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSES-------DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S 159 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS-------HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC-------cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C
Confidence 4566666666 66777777777777665331 0114456889999988 88899999999999887 5
Q ss_pred CChHHHHHHHHHHh
Q psy8498 75 MKASTFCCIVVKEG 88 (90)
Q Consensus 75 ~~~~~~~~l~~~~~ 88 (90)
.++.+++++|.+|.
T Consensus 160 ~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 160 RTGYAEYWAGMMFQ 173 (212)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66778888888774
No 167
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.02 E-value=1.9e-09 Score=69.90 Aligned_cols=77 Identities=10% Similarity=-0.051 Sum_probs=61.8
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC---hHHHHH
Q psy8498 11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK---ASTFCC 82 (90)
Q Consensus 11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~~~ 82 (90)
...|+|++|+..+++++++....-++. +.....+++++|.+|..+|+|++|+.++++++++ .|++ +..+.+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDS-NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChh-chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 456899999999999999987753332 3344667899999999999999999999999976 2344 455889
Q ss_pred HHHHHh
Q psy8498 83 IVVKEG 88 (90)
Q Consensus 83 l~~~~~ 88 (90)
+|.+|.
T Consensus 388 La~~~~ 393 (433)
T 3qww_A 388 LGRLYM 393 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 168
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.99 E-value=8.5e-09 Score=58.34 Aligned_cols=71 Identities=21% Similarity=0.120 Sum_probs=59.6
Q ss_pred hhHHHHHHhhC---CHHHHHHHHHHHHHHH-HhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498 4 DNVELSSDKSF---SYTVAENCFMEALSKV-KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 4 ~~l~~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (90)
.++|.++.+.. +..+++..+++.++.. |.. ...+++++|..+.++|+|++|++++++++++.|++..+
T Consensus 36 F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~--------~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 36 FEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE--------QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH--------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc--------hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 57788888877 6669999999999976 521 15567999999999999999999999999999998877
Q ss_pred HHH
Q psy8498 80 FCC 82 (90)
Q Consensus 80 ~~~ 82 (90)
..-
T Consensus 108 ~~L 110 (152)
T 1pc2_A 108 KEL 110 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 169
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=2e-09 Score=65.75 Aligned_cols=60 Identities=15% Similarity=0.005 Sum_probs=49.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+..+|..+...|++++|+..|+++++..|+. +..+..+|.++..+|++++|+..+++++.
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQN---------GEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---------HHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---------hhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 4578899999999999999999999998877 44568888888888888887766666543
No 170
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=2.4e-09 Score=65.39 Aligned_cols=86 Identities=13% Similarity=-0.097 Sum_probs=62.8
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh---------------CCC----------cchhhHHHHHHhHHHHHHHhc
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL---------------GGE----------IIADKWEPLLNNLGHVNRKLK 57 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~----------~~~~~~~~~~~~lg~~~~~~g 57 (90)
+.++|.++...|++++|+..++++++..|+. ... .........++++|.++...|
T Consensus 154 ~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g 233 (287)
T 3qou_A 154 GLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVG 233 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 4678888888888888888877765433211 000 000011445699999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHh
Q psy8498 58 KYEEALEFHKQALVVAPMK--ASTFCCIVVKEG 88 (90)
Q Consensus 58 ~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~ 88 (90)
++++|++.|+++++.+|++ +.++..++.++.
T Consensus 234 ~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 234 RNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 9999999999999999987 778888888764
No 171
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.97 E-value=7.2e-09 Score=64.52 Aligned_cols=83 Identities=8% Similarity=-0.199 Sum_probs=66.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC--------
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP-------- 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------- 74 (90)
+.++|.++...|++++|+.++++++++.+..+.. .....++.++|.++..+|++++|+.++++++.+.+
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 132 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence 5678999999999999999999999999887443 12234568999999999999999999999998753
Q ss_pred CChHHHHHHHHHHh
Q psy8498 75 MKASTFCCIVVKEG 88 (90)
Q Consensus 75 ~~~~~~~~l~~~~~ 88 (90)
....++.++|.++.
T Consensus 133 ~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 133 MHEFLVRIRAQLLW 146 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 23445667777654
No 172
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.94 E-value=3e-08 Score=61.68 Aligned_cols=84 Identities=11% Similarity=-0.052 Sum_probs=66.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----h
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-----A 77 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~ 77 (90)
+.++|.++...|++++|+.+|++++++.+..+.... ......+.++|.++...|++++|..++++++.+.+.. .
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL-PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS-THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 467899999999999999999999999987643211 1224456889999999999999999999999987742 2
Q ss_pred HHHHHHHHHH
Q psy8498 78 STFCCIVVKE 87 (90)
Q Consensus 78 ~~~~~l~~~~ 87 (90)
.++..+|.++
T Consensus 175 ~~~~~la~~~ 184 (373)
T 1hz4_A 175 QCLAMLIQCS 184 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455666654
No 173
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.94 E-value=1.2e-08 Score=61.17 Aligned_cols=72 Identities=13% Similarity=0.011 Sum_probs=37.3
Q ss_pred hhhHHHHHHh----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDK----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~ 74 (90)
+.++|.++.. .+++++|+.+|+++++.. . +..++++|.++.. .+++++|+.+|+++++..
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 108 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y---------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK- 108 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C---------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-
Confidence 3455566665 666666666666665541 1 2233555555555 555555555555555442
Q ss_pred CChHHHHHHHHHH
Q psy8498 75 MKASTFCCIVVKE 87 (90)
Q Consensus 75 ~~~~~~~~l~~~~ 87 (90)
++.++..+|.++
T Consensus 109 -~~~a~~~lg~~~ 120 (273)
T 1ouv_A 109 -YAEGCASLGGIY 120 (273)
T ss_dssp -CHHHHHHHHHHH
T ss_pred -CccHHHHHHHHH
Confidence 444455555444
No 174
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.91 E-value=1.9e-08 Score=52.49 Aligned_cols=65 Identities=12% Similarity=-0.041 Sum_probs=55.4
Q ss_pred hhhHHHHHHhhCC---HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q psy8498 3 LDNVELSSDKSFS---YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 3 ~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (90)
+..+|.++...++ .++|..++++++++.|+. ......+|..+++.|+|++|+.+++++++.+|..
T Consensus 9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~---------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---------EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3456677755555 799999999999999887 5666899999999999999999999999999873
No 175
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=6.3e-09 Score=60.98 Aligned_cols=71 Identities=15% Similarity=0.017 Sum_probs=42.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc----CHHHHHHHHHHHHhhCCCChH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK----KYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~ 78 (90)
+.++|.+|...+++++|+.+|+++.+.. . +..++++|.+|.. + ++++|+.+|+++.+ +.++.
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~---------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~ 86 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQG--D---------GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKS 86 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC--C---------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHH
Confidence 4567777777788888888888776531 1 2233555555555 4 55555555555533 23455
Q ss_pred HHHHHHHHH
Q psy8498 79 TFCCIVVKE 87 (90)
Q Consensus 79 ~~~~l~~~~ 87 (90)
+++++|.++
T Consensus 87 a~~~Lg~~y 95 (212)
T 3rjv_A 87 GEIVLARVL 95 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 176
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.89 E-value=6.9e-09 Score=63.63 Aligned_cols=76 Identities=8% Similarity=0.014 Sum_probs=54.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.++|.++...|++++|...|++++++.|.. .. .++.++|.++.+.|++++|...|+++++.+|.....+..
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 173 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PT---LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 173 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-----TH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccccC-----cc---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4567888888888888888888888865543 11 134778888888888888888888888877766666554
Q ss_pred HHHH
Q psy8498 83 IVVK 86 (90)
Q Consensus 83 l~~~ 86 (90)
.+.+
T Consensus 174 ~a~~ 177 (308)
T 2ond_A 174 AALM 177 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 177
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.87 E-value=1e-08 Score=58.22 Aligned_cols=86 Identities=13% Similarity=-0.048 Sum_probs=63.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHH---------------hhCCC----------cchhhHHHHHHhHHHHHHHhc
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVK---------------QLGGE----------IIADKWEPLLNNLGHVNRKLK 57 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~----------~~~~~~~~~~~~lg~~~~~~g 57 (90)
+.++|.++...|++++|+..|+++++..| ..... ...+.....+.++|.++...|
T Consensus 43 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g 122 (176)
T 2r5s_A 43 KLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVG 122 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 56788888899999999888887755432 00000 000111445689999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHh
Q psy8498 58 KYEEALEFHKQALVVAPMK--ASTFCCIVVKEG 88 (90)
Q Consensus 58 ~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~ 88 (90)
++++|+..|+++++.+|.. +.++..+|.++.
T Consensus 123 ~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 123 RDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 9999999999999999865 558888888764
No 178
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.86 E-value=1.7e-08 Score=61.85 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=62.3
Q ss_pred hhhHHHHHH-------hhCCH-------HHHHHHHHHHHH-HHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498 3 LDNVELSSD-------KSFSY-------TVAENCFMEALS-KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 67 (90)
Q Consensus 3 ~~~l~~~~~-------~~g~~-------~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 67 (90)
+.+.|..+. ..|++ ++|...|++|++ +.|+. ...+.++|.++...|++++|...|+
T Consensus 53 w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---------~~~~~~~~~~~~~~~~~~~A~~~~~ 123 (308)
T 2ond_A 53 WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------MLLYFAYADYEESRMKYEKVHSIYN 123 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 445666654 35885 999999999999 66655 3345999999999999999999999
Q ss_pred HHHhhCCCChH-HHHHHHHHH
Q psy8498 68 QALVVAPMKAS-TFCCIVVKE 87 (90)
Q Consensus 68 ~al~~~~~~~~-~~~~l~~~~ 87 (90)
++++++|.++. ++..+|.++
T Consensus 124 ~al~~~p~~~~~~~~~~~~~~ 144 (308)
T 2ond_A 124 RLLAIEDIDPTLVYIQYMKFA 144 (308)
T ss_dssp HHHTSSSSCTHHHHHHHHHHH
T ss_pred HHHhccccCccHHHHHHHHHH
Confidence 99999998886 788887765
No 179
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.82 E-value=2.2e-08 Score=52.20 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=43.2
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
+..++++|.++..+|++++|+.+|+++++++|.++.++..+|.++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 53 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER 53 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44569999999999999999999999999999999999999998864
No 180
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.80 E-value=2.1e-08 Score=64.91 Aligned_cols=80 Identities=10% Similarity=-0.048 Sum_probs=62.5
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-----CCCC---hHHH
Q psy8498 9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMK---ASTF 80 (90)
Q Consensus 9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~ 80 (90)
-+..+|+|++|+..+++++++....-++. +.....+++++|.+|..+|+|++|+.++++++++ .|++ +..+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDI-NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTT-SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCcc-chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 35578999999999999998765542222 3344667899999999999999999999999976 2444 4557
Q ss_pred HHHHHHHhc
Q psy8498 81 CCIVVKEGV 89 (90)
Q Consensus 81 ~~l~~~~~~ 89 (90)
+++|.+|..
T Consensus 375 ~nLa~~~~~ 383 (429)
T 3qwp_A 375 MKVGKLQLH 383 (429)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 889988753
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=6.3e-08 Score=59.73 Aligned_cols=75 Identities=13% Similarity=0.004 Sum_probs=57.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
..++|.++...|++++|+.+|++++.. +.. + .......+++|.+++++|+.++|...|++++..+|. +.+...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~--P---~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a 246 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDS-PAG--E---ACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA 246 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS-TTT--T---TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcC-CCC--c---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence 457899999999999999999998742 110 1 101335588999999999999999999999999998 666555
Q ss_pred HH
Q psy8498 83 IV 84 (90)
Q Consensus 83 l~ 84 (90)
+.
T Consensus 247 L~ 248 (282)
T 4f3v_A 247 LK 248 (282)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 182
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=1.4e-07 Score=51.98 Aligned_cols=70 Identities=13% Similarity=0.032 Sum_probs=54.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
+|.+|...+..++|+.+|+++.+. .. +..++++|.+|.. .+++++|+.+|++|.+. .++.+.+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~---------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~ 97 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NS---------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCL 97 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TC---------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CC---------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHH
Confidence 778888888888888888888875 11 4455888888888 78888888888888776 4677888
Q ss_pred HHHHHHh
Q psy8498 82 CIVVKEG 88 (90)
Q Consensus 82 ~l~~~~~ 88 (90)
++|.+|.
T Consensus 98 ~Lg~~y~ 104 (138)
T 1klx_A 98 ILGYKQY 104 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 183
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.72 E-value=1.5e-07 Score=51.94 Aligned_cols=70 Identities=10% Similarity=-0.020 Sum_probs=57.7
Q ss_pred chhhHHHHHHh----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhC
Q psy8498 2 DLDNVELSSDK----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVA 73 (90)
Q Consensus 2 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 73 (90)
+..++|.+|.. .+++++|+.+|+++.+. .. +..++++|.+|.. .+++++|+.+|++|.+..
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~---------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--ND---------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CC---------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 35789999998 89999999999999875 11 4456999999999 999999999999999874
Q ss_pred CCChHHHHHHH
Q psy8498 74 PMKASTFCCIV 84 (90)
Q Consensus 74 ~~~~~~~~~l~ 84 (90)
++.+..+++
T Consensus 128 --~~~A~~~l~ 136 (138)
T 1klx_A 128 --SEDACGILN 136 (138)
T ss_dssp --CHHHHHHC-
T ss_pred --CHHHHHHHh
Confidence 456665554
No 184
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.1e-07 Score=49.36 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=42.4
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
..+.++|.++...|++++|+++|+++++++|.++.++.++|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 50 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK 50 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999998754
No 185
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.59 E-value=1.1e-07 Score=61.38 Aligned_cols=72 Identities=7% Similarity=0.010 Sum_probs=46.1
Q ss_pred hhhHHHHHHhhC---CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh----cCHHHHHHHHHHHHhhCCC
Q psy8498 3 LDNVELSSDKSF---SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL----KKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 3 ~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~ 75 (90)
+.++|.+|...| ++++|+.+|+++.+..+.. +..++++|.+|... +++++|+.+|+++. |.
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~---------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g 246 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT---------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG 246 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC
Confidence 467888888888 8888888888887754332 22335566665444 45666666666654 55
Q ss_pred ChHHHHHHHHH
Q psy8498 76 KASTFCCIVVK 86 (90)
Q Consensus 76 ~~~~~~~l~~~ 86 (90)
++.+++++|.+
T Consensus 247 ~~~a~~~Lg~~ 257 (452)
T 3e4b_A 247 YPASWVSLAQL 257 (452)
T ss_dssp STHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555555554
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=2.6e-07 Score=58.27 Aligned_cols=69 Identities=13% Similarity=0.024 Sum_probs=55.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
..++|.+|...|+|++|..++++++.......+. .....++..+|.+|..+|++++|..++++++.+.+
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999998887666443 22345678899999999999999999999987753
No 187
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.54 E-value=1.1e-07 Score=61.51 Aligned_cols=73 Identities=12% Similarity=-0.050 Sum_probs=52.2
Q ss_pred hhhHHHHHHh----hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDK----SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~ 74 (90)
+.++|.+|.. .+++++|+.+|+++.+.. . +..++++|.+|.. .+++++|..+|+++++..|
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L---------SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C---------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 4567777777 778888888888777631 1 3345888888888 7888888888888888874
Q ss_pred C---ChHHHHHHHHH
Q psy8498 75 M---KASTFCCIVVK 86 (90)
Q Consensus 75 ~---~~~~~~~l~~~ 86 (90)
+ ++.+..++|.+
T Consensus 435 ~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 435 NLFGTENRNITEKKL 449 (490)
T ss_dssp CHHHHHHHHHHHTTS
T ss_pred CCcCCHHHHHHHHhc
Confidence 3 66666666543
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.54 E-value=6e-07 Score=44.99 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=42.5
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
...+..+|.++...|++++|+.+|+++++++|.++.++..+|.++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 55 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 55 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999988753
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.53 E-value=5.7e-07 Score=59.97 Aligned_cols=77 Identities=8% Similarity=0.016 Sum_probs=66.4
Q ss_pred hhhHHHHHHhhCC----------HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc--CHHHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFS----------YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK--KYEEALEFHKQAL 70 (90)
Q Consensus 3 ~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al 70 (90)
++.-+.++...|+ +++++..+.++++..|+. ...| +..+.++.+.| +++++++++.+++
T Consensus 66 W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-----y~aW----~hR~w~l~~l~~~~~~~el~~~~k~l 136 (567)
T 1dce_A 66 WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTW----HHRCWLLSRLPEPNWARELELCARFL 136 (567)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHH----HHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-----HHHH----HHHHHHHHHcccccHHHHHHHHHHHH
Confidence 4566777888888 999999999999998887 4555 88999999999 7799999999999
Q ss_pred hhCCCChHHHHHHHHHHh
Q psy8498 71 VVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~ 88 (90)
+++|.+..++...+.+..
T Consensus 137 ~~d~~N~~aW~~R~~~l~ 154 (567)
T 1dce_A 137 EADERNFHCWDYRRFVAA 154 (567)
T ss_dssp HHCTTCHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHH
Confidence 999999999988887754
No 190
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=3e-07 Score=56.70 Aligned_cols=79 Identities=9% Similarity=-0.146 Sum_probs=57.0
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC--CC-ChHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--PM-KASTF 80 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~~ 80 (90)
..+|.++.+.++|++|+.+|+++.+..+. ..-..+++++|.++..+|++++|+++|++++.-. |. .+.+.
T Consensus 139 ~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~ 211 (282)
T 4f3v_A 139 WMKAVVYGAAERWTDVIDQVKSAGKWPDK-------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIA 211 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTGGGCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhccCCc-------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHH
Confidence 45677788888888888888755442100 0002356899999999999999999999998544 54 55678
Q ss_pred HHHHHHHhc
Q psy8498 81 CCIVVKEGV 89 (90)
Q Consensus 81 ~~l~~~~~~ 89 (90)
+..|.++..
T Consensus 212 ~~~glaL~~ 220 (282)
T 4f3v_A 212 WYLAMARRS 220 (282)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888753
No 191
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.50 E-value=1e-06 Score=57.03 Aligned_cols=72 Identities=15% Similarity=-0.029 Sum_probs=42.2
Q ss_pred hhHHHHHHhhC---CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH----hcCHHHHHHHHHHHHhhCCCC
Q psy8498 4 DNVELSSDKSF---SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMK 76 (90)
Q Consensus 4 ~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~ 76 (90)
.++|.+|...| ++++|+.+|+++++. .. +..++++|.+|.. .+++++|+.+|+++++.. +
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~---------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~ 398 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE---------KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L 398 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC---------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C
Confidence 34445544433 455555555555543 11 3344777777777 677777777777776653 4
Q ss_pred hHHHHHHHHHHh
Q psy8498 77 ASTFCCIVVKEG 88 (90)
Q Consensus 77 ~~~~~~l~~~~~ 88 (90)
+.++.++|.++.
T Consensus 399 ~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 399 SAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666777776653
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.50 E-value=7.1e-07 Score=57.66 Aligned_cols=69 Identities=6% Similarity=-0.166 Sum_probs=37.3
Q ss_pred hhHHHH-H--HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-----CHHHHHHHHHHHHhhCCC
Q psy8498 4 DNVELS-S--DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----KYEEALEFHKQALVVAPM 75 (90)
Q Consensus 4 ~~l~~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~ 75 (90)
.++|.+ + ...+++++|+.+|+++.+.. . +..++++|.+|. .| ++++|+.+|+++. +.
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~---------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g 316 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD--Q---------PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR 316 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--C---------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC
Confidence 455555 3 34556666666666655321 1 233455666655 44 6666666666655 55
Q ss_pred ChHHHHHHHHHH
Q psy8498 76 KASTFCCIVVKE 87 (90)
Q Consensus 76 ~~~~~~~l~~~~ 87 (90)
++.+++++|.+|
T Consensus 317 ~~~A~~~Lg~~y 328 (452)
T 3e4b_A 317 EVAADYYLGQIY 328 (452)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 556666666554
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.6e-06 Score=54.66 Aligned_cols=86 Identities=9% Similarity=-0.057 Sum_probs=59.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC-------------------------------------cchhhHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE-------------------------------------IIADKWEPL 45 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------------~~~~~~~~~ 45 (90)
+.++|.+|...|++++|.++++++++..+..+.. .....+..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5677777777777777777777777665543210 001223566
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHh
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIVVKEG 88 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~ 88 (90)
+.++|.++...|+|++|+.++++++... +....++..+|.++.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 7899999999999999999999998762 223455666666654
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=6.3e-07 Score=59.76 Aligned_cols=77 Identities=9% Similarity=-0.019 Sum_probs=68.5
Q ss_pred hhhHHHHHHhhC--CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhCCCChHH
Q psy8498 3 LDNVELSSDKSF--SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 79 (90)
+.+-+.++...+ ++++++.++.++++..|++ ...| +..+.+..+.| .+++++++++++++.+|++..+
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-----~~aW----~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADERN-----FHCW----DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-----HHHH----HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-----ccHH----HHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence 556678888899 7799999999999999887 4445 99999999999 9999999999999999999999
Q ss_pred HHHHHHHHh
Q psy8498 80 FCCIVVKEG 88 (90)
Q Consensus 80 ~~~l~~~~~ 88 (90)
+...+.+..
T Consensus 181 W~~r~~ll~ 189 (567)
T 1dce_A 181 WHYRSCLLP 189 (567)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888754
No 195
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.43 E-value=1.9e-06 Score=56.16 Aligned_cols=87 Identities=16% Similarity=0.074 Sum_probs=63.8
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh--------CCC---------cchhhHHHHHHhHHHHHHHhcCHHHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQL--------GGE---------IIADKWEPLLNNLGHVNRKLKKYEEALE 64 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~---------~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 64 (90)
.+..+|.++.+.|+|++|++.|+++.+...=. .++ .. ...+.-...+..+|.+.|++++|+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTT-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHH-HhCHhhHHHHHHHHHHCCCHHHHHH
Confidence 35688999999999999999999994321000 000 00 0001112446689999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHhc
Q psy8498 65 FHKQALVVAPMKASTFCCIVVKEGV 89 (90)
Q Consensus 65 ~~~~al~~~~~~~~~~~~l~~~~~~ 89 (90)
++++++.+++.+...+..+|.+++.
T Consensus 229 lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 229 MLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
No 196
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.40 E-value=2.8e-06 Score=46.59 Aligned_cols=70 Identities=20% Similarity=0.130 Sum_probs=52.6
Q ss_pred hhHHHHHHhhCCHHH---HHHHHHHHHHHH-HhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHH
Q psy8498 4 DNVELSSDKSFSYTV---AENCFMEALSKV-KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~---A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (90)
.++|.++....+... ++..++..++.. | .....+++.+|..++++|+|++|+++.+..|++.|.+..+
T Consensus 39 F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--------~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 39 FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--------chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 355666666666655 666666666543 2 1225577999999999999999999999999999988776
Q ss_pred HH
Q psy8498 80 FC 81 (90)
Q Consensus 80 ~~ 81 (90)
..
T Consensus 111 ~~ 112 (126)
T 1nzn_A 111 KE 112 (126)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 197
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.40 E-value=1.7e-05 Score=45.34 Aligned_cols=70 Identities=11% Similarity=-0.147 Sum_probs=55.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+..-...+...+.|+.|+.....++.+.+...+.........++..+|.+++..|+|..|...|++||+.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3445566778999999999999999987665432223344556789999999999999999999999865
No 198
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.40 E-value=1.5e-06 Score=56.76 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=59.3
Q ss_pred hhhHHHHHHh-------hCCHH-------HHHHHHHHHHH-HHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498 3 LDNVELSSDK-------SFSYT-------VAENCFMEALS-KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 67 (90)
Q Consensus 3 ~~~l~~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 67 (90)
+.+.|..+.. .|+++ +|...|++|++ +.|+. ..++..+|.++.+.|++++|...|+
T Consensus 275 w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---------~~l~~~~~~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 275 WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------MLLYFAYADYEESRMKYEKVHSIYN 345 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3455666664 79987 89999999997 55544 3445899999999999999999999
Q ss_pred HHHhhCCCCh-HHHHHHHHHH
Q psy8498 68 QALVVAPMKA-STFCCIVVKE 87 (90)
Q Consensus 68 ~al~~~~~~~-~~~~~l~~~~ 87 (90)
++++++|.++ .++...+.++
T Consensus 346 ~al~~~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 346 RLLAIEDIDPTLVYIQYMKFA 366 (530)
T ss_dssp HHHHSSSSCHHHHHHHHHHHH
T ss_pred HHhCccccCchHHHHHHHHHH
Confidence 9999999875 4677766543
No 199
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.39 E-value=1.8e-06 Score=56.35 Aligned_cols=71 Identities=8% Similarity=0.018 Sum_probs=48.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
+.++|.++...|++++|...|++++++.|.. . ..++..+|.++.+.|++++|.+.|++|++..|.....+.
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 394 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDID-----P---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccC-----c---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHH
Confidence 4567788888999999999999999865432 1 123466677777777777777777777766665444443
No 200
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.38 E-value=3.4e-06 Score=52.49 Aligned_cols=77 Identities=6% Similarity=-0.145 Sum_probs=63.9
Q ss_pred hhhHHHHHHhhC--CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHH----HHh---cCHHHHHHHHHHHHhhC
Q psy8498 3 LDNVELSSDKSF--SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVN----RKL---KKYEEALEFHKQALVVA 73 (90)
Q Consensus 3 ~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~al~~~ 73 (90)
++.-+.++...+ ++++++.++.+++...|+. ...| +..+.++ ... +++++++.++.++++.+
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-----y~aW----~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~ 140 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-----YQIW----NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD 140 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-----CHHH----HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-----HHHH----HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC
Confidence 455677888888 9999999999999998877 5555 7778887 666 78899999999999999
Q ss_pred CCChHHHHHHHHHHh
Q psy8498 74 PMKASTFCCIVVKEG 88 (90)
Q Consensus 74 ~~~~~~~~~l~~~~~ 88 (90)
|++..++...+.+..
T Consensus 141 pkny~aW~~R~~vl~ 155 (306)
T 3dra_A 141 PKNHHVWSYRKWLVD 155 (306)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999888877654
No 201
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.34 E-value=4.1e-06 Score=53.47 Aligned_cols=64 Identities=13% Similarity=-0.081 Sum_probs=54.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (90)
.++..+...|++++|+..+++|+.+.+ . +..+..+|.++...|++++|++.|++|+.++|..+.
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~Ln~----s------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGIDLEM----S------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCC----C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCC----C------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 356677778999999999999999952 1 334577899999999999999999999999997654
No 202
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.34 E-value=3.1e-06 Score=52.66 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=63.8
Q ss_pred hhhHHHHHHhhCCHH--HHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC------HHHHHHHHHHHHhhCC
Q psy8498 3 LDNVELSSDKSFSYT--VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK------YEEALEFHKQALVVAP 74 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~~ 74 (90)
+.+-+.+....|+++ +++.++.++++..+.+ ...| ++.+.+....|+ ++++++++++++.++|
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N-----~sAW----~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p 217 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN-----NSAW----SHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP 217 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC-----HHHH----HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC-----HHHH----HHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC
Confidence 445566777788887 8888888888887776 4444 888999999887 9999999999999999
Q ss_pred CChHHHHHHHHHHh
Q psy8498 75 MKASTFCCIVVKEG 88 (90)
Q Consensus 75 ~~~~~~~~l~~~~~ 88 (90)
++..+++.++.++.
T Consensus 218 ~n~SaW~y~~~ll~ 231 (306)
T 3dra_A 218 QNPSTWNYLLGIHE 231 (306)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 99999988887764
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.33 E-value=8.1e-07 Score=55.08 Aligned_cols=66 Identities=11% Similarity=-0.064 Sum_probs=55.4
Q ss_pred chhhHHHHHHhh-----CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhhCCC
Q psy8498 2 DLDNVELSSDKS-----FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 2 ~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~ 75 (90)
++.-+|.+|... |+.++|+++|++|+++.|... ..+...+|..++. +|+++++.+++++++..+|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~--------id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD--------PDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC--------SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC--------chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 355689999985 999999999999999988532 2244778999988 59999999999999998875
No 204
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=7.8e-06 Score=51.47 Aligned_cols=77 Identities=9% Similarity=-0.025 Sum_probs=62.1
Q ss_pred hhhHHHHHHhhC--CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhhCCCChHH
Q psy8498 3 LDNVELSSDKSF--SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~ 79 (90)
+++-+.++...+ ++++++.++.++++..|.+ ...| +..+.+....|. ++++++++.+++..+|+|..+
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-----y~AW----~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA 181 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADERN-----FHCW----DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 181 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-----HHHH----HHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-----HHHH----HHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH
Confidence 345566667777 4889999999999988877 4455 888888888888 689999999999999999999
Q ss_pred HHHHHHHHh
Q psy8498 80 FCCIVVKEG 88 (90)
Q Consensus 80 ~~~l~~~~~ 88 (90)
+...+.+..
T Consensus 182 W~~R~~ll~ 190 (331)
T 3dss_A 182 WHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.24 E-value=5e-06 Score=42.43 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=39.3
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKAS-TFCCIVVKEG 88 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~ 88 (90)
.+.|.++...|++++|+..|+++++.+|.++. ++..+|.++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~ 46 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR 46 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999 9999999875
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.24 E-value=5.1e-06 Score=51.56 Aligned_cols=68 Identities=9% Similarity=-0.082 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-----cCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHH
Q psy8498 14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-----KKYEEALEFHKQALVVAPMK-ASTFCCIVVKE 87 (90)
Q Consensus 14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~ 87 (90)
+....|...+++++++.|.. .. -..+..+|.+|... |+.++|..+|++|++++|+. ..+++..|..+
T Consensus 177 ~~l~~A~a~lerAleLDP~~-----~~--GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l 249 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSY-----QE--GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADAL 249 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTH-----HH--HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHhCCCc-----cc--CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 34567889999999998874 11 33568999999995 99999999999999999964 88877777655
Q ss_pred h
Q psy8498 88 G 88 (90)
Q Consensus 88 ~ 88 (90)
+
T Consensus 250 ~ 250 (301)
T 3u64_A 250 C 250 (301)
T ss_dssp T
T ss_pred H
Confidence 4
No 207
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=1.3e-05 Score=50.40 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=63.0
Q ss_pred hhhHHHHHHhhCC-HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh--------------cCHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFS-YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL--------------KKYEEALEFHK 67 (90)
Q Consensus 3 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~ 67 (90)
+.+-+.+....|. +++++.++.++++..|.+ ...| ++.+.++... +.++++++++.
T Consensus 147 W~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N-----~SAW----~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~ 217 (331)
T 3dss_A 147 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-----YSSW----HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 217 (331)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC-----HHHH----HHHHHHHHHHSCCC------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC-----HHHH----HHHHHHHHHhhhccccccccccchHHHHHHHHHHH
Confidence 4566778888888 699999999999998877 4444 9999999888 67999999999
Q ss_pred HHHhhCCCChHHHHHHHHH
Q psy8498 68 QALVVAPMKASTFCCIVVK 86 (90)
Q Consensus 68 ~al~~~~~~~~~~~~l~~~ 86 (90)
+++.++|++..+++.+..+
T Consensus 218 ~ai~~~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 218 NAFFTDPNDQSAWFYHRWL 236 (331)
T ss_dssp HHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHH
Confidence 9999999999998755443
No 208
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.18 E-value=7.6e-06 Score=59.76 Aligned_cols=73 Identities=8% Similarity=-0.010 Sum_probs=57.0
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
.+.++|.++...|++++|+.+|.+| ++ +..+.+.|.++.+.|++++|++++++|.+..+. +..-.
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA-----dD---------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt 1171 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA-----DD---------PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVET 1171 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc-----CC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccH
Confidence 3678999999999999999999886 22 344588999999999999999999999988742 22233
Q ss_pred HHHHHHhc
Q psy8498 82 CIVVKEGV 89 (90)
Q Consensus 82 ~l~~~~~~ 89 (90)
.+|.+|+.
T Consensus 1172 ~LafaYAK 1179 (1630)
T 1xi4_A 1172 ELIFALAK 1179 (1630)
T ss_pred HHHHHHHh
Confidence 46666553
No 209
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.11 E-value=3.1e-05 Score=42.77 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=50.7
Q ss_pred hHHHHHHhhCC---HHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 5 NVELSSDKSFS---YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 5 ~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
+.+-++....+ ..+++..++..++..|. ....+++.+|..++++|+|++|+++.+..+++.|++..+..
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~--------~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAES--------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 44444444343 34677778777765432 22556799999999999999999999999999998877653
No 210
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.10 E-value=1.1e-05 Score=51.08 Aligned_cols=69 Identities=10% Similarity=-0.030 Sum_probs=38.1
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy8498 9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVAPMKASTFCCIVVK 86 (90)
Q Consensus 9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 86 (90)
+.......++|+.++.+++.+.|+. .+.| +..+.++..+| .++++++++++++..+|++..++...+.+
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~-----ytaW----n~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl 132 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAH-----YTVW----QYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL 132 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTC-----HHHH----HHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchh-----HHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3344444455666666666665555 3333 55555555555 36666666666666666665555555444
No 211
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.09 E-value=2.5e-05 Score=49.48 Aligned_cols=77 Identities=9% Similarity=-0.022 Sum_probs=67.3
Q ss_pred hhhHHHHHHhhC-CHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHh-c-CHHHHHHHHHHHHhhCCCChHH
Q psy8498 3 LDNVELSSDKSF-SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL-K-KYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~ 79 (90)
++.-+.++...| ++++++.++.++++..|+. ...| +..+.++... + +++++++++.++++.+|++..+
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-----y~aW----~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~A 161 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-----YQVW----HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHT 161 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-----HHHH----HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-----HHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHH
Confidence 455677888888 5999999999999988877 5555 9999999998 8 9999999999999999999999
Q ss_pred HHHHHHHHh
Q psy8498 80 FCCIVVKEG 88 (90)
Q Consensus 80 ~~~l~~~~~ 88 (90)
+...+.+..
T Consensus 162 W~~R~wvl~ 170 (349)
T 3q7a_A 162 WAYLHWLYS 170 (349)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887754
No 212
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.07 E-value=2.4e-05 Score=57.27 Aligned_cols=86 Identities=15% Similarity=0.056 Sum_probs=61.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh--------CCC-------cc-hhhHHHHHHhHHHHHHHhcCHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL--------GGE-------II-ADKWEPLLNNLGHVNRKLKKYEEALEFH 66 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-------~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 66 (90)
+..+|.++.+.|++++|++.+++|.+...=. .++ .. -...+..+..++..|.+.|.|++|++++
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5567778888888888888888775543200 000 00 0001223467888999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHh
Q psy8498 67 KQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 67 ~~al~~~~~~~~~~~~l~~~~~ 88 (90)
++++.+++.+...+..+|.+++
T Consensus 1304 E~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1304 EAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHhccChhHhHHHHHHHHHHH
Confidence 9999999988888888888775
No 213
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.06 E-value=5.1e-05 Score=43.43 Aligned_cols=83 Identities=14% Similarity=0.021 Sum_probs=58.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCc-----------------chhhHHHHHHhHHHHHHHhcCHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI-----------------IADKWEPLLNNLGHVNRKLKKYEEALEF 65 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 65 (90)
+..+|.++...++|.+|+..|++|+.......... .... ..+.+.++.||.++|++++|+..
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e-~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSE-IEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccch-HHHHHHHHHHHHHHCCHHHHHHH
Confidence 46789999999999999999999998877431110 0000 13558899999999999999998
Q ss_pred HHHHHhhCCCChHHHHHHHHHH
Q psy8498 66 HKQALVVAPMKASTFCCIVVKE 87 (90)
Q Consensus 66 ~~~al~~~~~~~~~~~~l~~~~ 87 (90)
.+.. ......+.....+|..|
T Consensus 145 Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 145 LDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHTS-CGGGCCHHHHHHHHHHC
T ss_pred HhcC-CchhcCHHHHHHHHHHh
Confidence 6652 22224555555666554
No 214
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.04 E-value=1.8e-05 Score=49.38 Aligned_cols=64 Identities=8% Similarity=-0.146 Sum_probs=52.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
.-+|.++...|++++|++++.+.+...|.. ....+...++.++.++|+.+.|.+.+++..+.+|
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAE-------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCST-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCc-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 467999999999999999999987654310 1134457789999999999999999999999988
No 215
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.00 E-value=1.2e-05 Score=52.55 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=39.0
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHH
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (90)
++.++|..+...|.|++|..+|.++ ..| ..+|.++.++|++++|++.|+++ .++.++.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------------~n~----~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk 181 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-------------SNF----GRLASTLVHLGEYQAAVDGARKA-----NSTRTWK 181 (449)
T ss_dssp -------------CTTTHHHHHHHT-------------TCH----HHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-------------hhH----HHHHHHHHHhccHHHHHHHHHHc-----CCchhHH
Confidence 4678999999999999999999966 123 88999999999999999999999 2455554
Q ss_pred HHHH
Q psy8498 82 CIVV 85 (90)
Q Consensus 82 ~l~~ 85 (90)
.+..
T Consensus 182 ~v~~ 185 (449)
T 1b89_A 182 EVCF 185 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 216
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.85 E-value=0.00046 Score=38.56 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=49.9
Q ss_pred hHHHHHHhhCCHH---HHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498 5 NVELSSDKSFSYT---VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 5 ~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (90)
+.+.++....+.+ +++..++..++..|. ....+++.+|..++++|+|++|.++.+..|++.|.+..+.
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKEAES--------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--------THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--------chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4444444444443 577777777764321 2255779999999999999999999999999999887664
No 217
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.76 E-value=0.00032 Score=46.43 Aligned_cols=76 Identities=11% Similarity=-0.032 Sum_probs=64.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+..+|.+..-...++.|..+|++|..+.|.. +. .++.||.+....|+.-+|+-+|.+++......+.+..+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-----G~----~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~n 225 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSN-----GQ----PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-----SH----HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-----Cc----hHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHH
Confidence 4678888888899999999999999999988 33 34999999999999999999999999876667777777
Q ss_pred HHHHH
Q psy8498 83 IVVKE 87 (90)
Q Consensus 83 l~~~~ 87 (90)
+....
T Consensus 226 L~~~f 230 (497)
T 1ya0_A 226 LQKAL 230 (497)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.60 E-value=0.00031 Score=36.22 Aligned_cols=46 Identities=20% Similarity=0.142 Sum_probs=39.7
Q ss_pred HHHHHhHHHHHHHhcC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 43 EPLLNNLGHVNRKLKK---YEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
+..+..+|.++...++ .++|...++++++++|+++.++..+|..+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~ 54 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF 54 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH
Confidence 3455889999987666 799999999999999999999999998764
No 219
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.58 E-value=0.00038 Score=43.48 Aligned_cols=70 Identities=10% Similarity=-0.100 Sum_probs=54.2
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhhCCCc-chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498 9 SSDKSFSYTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (90)
++..+|++++|+..++.+++..|..+... ....-+.++.|+..+...+|+ +|.++++++.+.+|+++-..
T Consensus 220 ~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 220 LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 78999999999999998888877631110 001115566789999999998 99999999999999988654
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.56 E-value=0.00046 Score=35.94 Aligned_cols=45 Identities=20% Similarity=0.015 Sum_probs=37.0
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHhc
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVA-------PMKASTFCCIVVKEGV 89 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~ 89 (90)
-++.+|..++..|+|+.|+.+|++|++.. +..+.++..+|.++..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~ 58 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ 58 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH
Confidence 45889999999999999999999999863 2346678888888753
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.34 E-value=0.004 Score=39.89 Aligned_cols=74 Identities=7% Similarity=-0.084 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhCC------------------C-----------------cchhhHHHHHHhHHHHHHHhcC
Q psy8498 14 FSYTVAENCFMEALSKVKQLGG------------------E-----------------IIADKWEPLLNNLGHVNRKLKK 58 (90)
Q Consensus 14 g~~~~A~~~~~~al~~~~~~~~------------------~-----------------~~~~~~~~~~~~lg~~~~~~g~ 58 (90)
.++.+|+.+|++|+++.|+... . .....-+.++..++..+...|+
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 3457899999999999887510 0 0001112234456777778899
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 59 YEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
+++|+..+++|+.++|+ ..++..+|.++.
T Consensus 293 ~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~ 321 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS-WLNYVLLGKVYE 321 (372)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 99999999999999974 566677777664
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.23 E-value=0.00077 Score=38.04 Aligned_cols=47 Identities=6% Similarity=-0.023 Sum_probs=39.7
Q ss_pred HHHHHhHHHHHHHhc---CHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHhc
Q psy8498 43 EPLLNNLGHVNRKLK---KYEEALEFHKQALVVA-P-MKASTFCCIVVKEGV 89 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-~-~~~~~~~~l~~~~~~ 89 (90)
..+.+++|+++.+.+ +.++++.+++..++.+ | .+...++++|..+..
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k 83 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 83 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Confidence 345599999999988 7779999999999998 7 568889999988754
No 223
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0015 Score=45.24 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=46.5
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 69 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 69 (90)
+..+...|+|+-|+++.++|....|.. ...| ..|+.+|.++|+|+.|+-...-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPse-----F~tW----~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDS-----FESW----YNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSC-----HHHH----HHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchh-----hHHH----HHHHHHHHHhccHHHHHHHHhcC
Confidence 555677899999999999999999877 6667 99999999999999999755443
No 224
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.66 E-value=0.0063 Score=40.32 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=40.6
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
++..+|.+.+-...++.|..+|.+|..+.|.++.++..+|.+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~ 197 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh
Confidence 56789999999999999999999999999999999999998764
No 225
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.44 E-value=0.017 Score=36.86 Aligned_cols=59 Identities=10% Similarity=-0.081 Sum_probs=49.9
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..++..+...|++++++..+.+++...|-. +..+..+-.++...|+..+|++.|+++..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~---------E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYR---------EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888999999999999999887766 44557888899999999999999999764
No 226
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.062 Score=37.46 Aligned_cols=46 Identities=17% Similarity=0.025 Sum_probs=41.6
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEGVL 90 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 90 (90)
.+.-.+..+...|+++-|+.+.++|+...|.+..+|..++.||..|
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l 384 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKK 384 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh
Confidence 4566688888999999999999999999999999999999999764
No 227
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.31 E-value=0.083 Score=34.09 Aligned_cols=66 Identities=15% Similarity=-0.009 Sum_probs=54.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
++|..|...|+|.+|.+.+.+.++-....++. .....++.....+|..+|++.++...+.+|....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~---~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDK---NLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccc---hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 68999999999999999999999887765432 2334456777889999999999999999998653
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.00 E-value=0.032 Score=31.63 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=48.4
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498 11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (90)
...+|.++|...|+.++++.+.. +.++...|.+-.++|+...|.....+|+-+.|...
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkF---------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKF---------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTB---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHhcCHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 45689999999999999972221 55568899999999999999999999999988543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.83 E-value=0.0096 Score=32.54 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=28.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+..+|+.+.+.|+|++|.++++..+++.|.+
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 3468999999999999999999999998876
No 230
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.022 Score=38.07 Aligned_cols=70 Identities=13% Similarity=0.007 Sum_probs=53.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (90)
+-+-..|...+.|+.|..+..++. +|.... ....+...++.+|.++.-+++|.+|.+++.+|+...|.+.
T Consensus 235 nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~--sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 235 NLILRDFLNNGEVDSASDFISKLE--YPHTDV--SSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHC--SCTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHccCcHHHHHHHHhcCc--CCcccC--CHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 344667888999999999988874 443311 1234456678899999999999999999999999887543
No 231
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.097 Score=33.86 Aligned_cols=65 Identities=11% Similarity=-0.100 Sum_probs=50.1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 2 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
....+|..|.+.|++++|.++|.++...-... . ....++..+-.++...+++..+..++.++..+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~--~----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIST--G----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC--C----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--H----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34578999999999999999999987754332 1 11344566777888899999999999998755
No 232
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.62 E-value=0.18 Score=33.26 Aligned_cols=61 Identities=8% Similarity=-0.149 Sum_probs=36.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
++.+-..|.+.|++++|..+|++..+. +..+. ..+++.+=..|.+.|+.++|.+.|++..+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAF----GIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT----TCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344556677777777777777765432 11111 33446666666666777777766666554
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.52 E-value=0.13 Score=29.20 Aligned_cols=71 Identities=8% Similarity=0.062 Sum_probs=49.0
Q ss_pred HHHHhhCCH------HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHH
Q psy8498 8 LSSDKSFSY------TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80 (90)
Q Consensus 8 ~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (90)
...-+.|+. ++-.+.|++|+...|-.. ...-+.++.++.+.|.. ...++.++|.+.|+.++.+..+.+..+
T Consensus 21 ~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiw 97 (161)
T 4h7y_A 21 LKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVH 97 (161)
T ss_dssp HHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHH
T ss_pred HHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHH
Confidence 334455888 888899999999887763 21122233345667755 677999999999999998855543333
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.36 E-value=0.098 Score=35.44 Aligned_cols=68 Identities=10% Similarity=-0.010 Sum_probs=41.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHH------HhhCCCcchhhHHHH------HHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKV------KQLGGEIIADKWEPL------LNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~------~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
+.++|..+.+.++++.|+++|.++-+.. ...++.......... +.....++.+.|++++|+++|.+.-
T Consensus 684 W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 684 WRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 5689999999999999999999853222 211111000000000 1223446777899999988887743
No 235
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.29 E-value=0.12 Score=33.92 Aligned_cols=56 Identities=5% Similarity=-0.123 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+.....|++++...|.. ...| ...+..+...|+.+.|...|++|+.. |.+...+..
T Consensus 196 ~Rv~~~ye~al~~~p~~-----~~lW----~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~ 251 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYA-----EEVY----FFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY 251 (493)
T ss_dssp HHHHHHHHHHHHHTTTC-----HHHH----HHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCC-----HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 44567888888877655 3444 88899999999999999999999999 977655443
No 236
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.20 E-value=0.12 Score=35.50 Aligned_cols=52 Identities=6% Similarity=-0.081 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 14 FSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 14 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
++++.|...|+++++..|.. ...| ...+......|+.+.|...|++|+...|
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~-----~~~w----~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATD-----GEYI----NKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTC-----HHHH----HHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHHHHHHHCCCc-----hHHH----HHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 45888999999999887765 2333 6777788889999999999999998876
No 237
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.17 E-value=0.4 Score=34.95 Aligned_cols=75 Identities=7% Similarity=-0.075 Sum_probs=54.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh-CCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh--CCCChHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL-GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV--APMKAST 79 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 79 (90)
++-+-..|.+.|+.++|..+|.+.-+..... ..+ ..+|+.+=..|++.|+.++|.+.|++..+. .| +..+
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvT 202 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT------LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLS 202 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHH
Confidence 4556678999999999999998866543322 222 456799999999999999999999998754 34 4455
Q ss_pred HHHHH
Q psy8498 80 FCCIV 84 (90)
Q Consensus 80 ~~~l~ 84 (90)
|..+-
T Consensus 203 YntLI 207 (1134)
T 3spa_A 203 YAAAL 207 (1134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 238
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.05 E-value=0.22 Score=30.69 Aligned_cols=60 Identities=15% Similarity=0.001 Sum_probs=51.3
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498 9 SSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 9 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (90)
...+.|+.++|+...+..++..|.+ ... -..+-.+++-.|+|+.|..-.+.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~d-----a~~----R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKD-----ASL----RSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTC-----HHH----HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcC-----HHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 4567899999999999999988877 333 37788999999999999999999999999654
No 239
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.05 E-value=0.51 Score=32.47 Aligned_cols=80 Identities=3% Similarity=0.015 Sum_probs=52.2
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh-------CCCc------chhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL-------GGEI------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..+......|++++|...|+++++..+.. .+.. .......++...+.+..+.|..+.|...|.+|++
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666778899999999999999875311 0000 0001122347777888888999999999999987
Q ss_pred h-CCCChHHHHHHH
Q psy8498 72 V-APMKASTFCCIV 84 (90)
Q Consensus 72 ~-~~~~~~~~~~l~ 84 (90)
. .+.....+...+
T Consensus 463 ~~~~~~~~lyi~~A 476 (679)
T 4e6h_A 463 LKKLVTPDIYLENA 476 (679)
T ss_dssp TGGGSCTHHHHHHH
T ss_pred hcCCCChHHHHHHH
Confidence 7 333344444333
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.86 E-value=0.25 Score=28.91 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=48.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHHH--HHHhhCCC------cc-hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 7 ELSSDKSFSYTVAENCFMEALS--KVKQLGGE------II-ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~------~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
..+|....+|..|+.+.++.++ +.++.+-+ .. ....+--++-+|.++...|+.++|+.+|.++....|
T Consensus 69 ~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 69 SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 5678889999999999999883 32221000 00 011122357789999999999999999999988776
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.16 Score=29.28 Aligned_cols=68 Identities=10% Similarity=-0.055 Sum_probs=44.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh------CCCcchhhHHHH------HHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL------GGEIIADKWEPL------LNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~------~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
+..+|......|+++-|+++|+++-+...-. ++.........+ ++....++..+|+++++++.|.++=
T Consensus 37 Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 37 WERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 6788999999999999999999876554431 111000000000 1333566778999999999887743
No 242
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.65 E-value=0.25 Score=32.58 Aligned_cols=62 Identities=13% Similarity=0.012 Sum_probs=48.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++.+-..|.+.|+.++|.++|++..+. ...++ ..+++.+-..+.+.|+.++|.+.+++....
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~--G~~Pd------~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVES--EVVPE------EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--TCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCC------HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 445666789999999999999988653 11112 456799999999999999999999997654
No 243
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=94.34 E-value=0.39 Score=29.38 Aligned_cols=53 Identities=17% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV 71 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 71 (90)
+.|...|++|+++. .. -++.++.......|.+.+|++ +++.++|....++|..
T Consensus 173 e~a~~aY~~A~~iA-~~-L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVA-KD-LEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHH-TT-SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-Hh-CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46888999999998 43 222234444455778888887 8999999999999885
No 244
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=94.24 E-value=0.48 Score=28.42 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=43.4
Q ss_pred hCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhh
Q psy8498 13 SFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVV 72 (90)
Q Consensus 13 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~ 72 (90)
.|+-+.|...|++|.++....- ++.++.......|.+.+|++ +++.++|....++|+.+
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L-~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHP-DKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCG-GGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhC-CCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4557889999999999987642 22233333445677777776 89999999999999764
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.01 E-value=0.034 Score=30.68 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=27.5
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.-+|+.+.+.|+|++|.++.+..+++.|.+
T Consensus 82 YyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 82 YYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 468999999999999999999999998876
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.88 E-value=0.22 Score=36.06 Aligned_cols=69 Identities=19% Similarity=0.016 Sum_probs=50.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCC--------------CcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGG--------------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+|.++...|++++|..+|+++-........ ..........|..+..++.+.|.++.+++..+.|++
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 689999999999999999987432211100 000112244567788899999999999999999998
Q ss_pred hCC
Q psy8498 72 VAP 74 (90)
Q Consensus 72 ~~~ 74 (90)
..+
T Consensus 928 ~~~ 930 (1139)
T 4fhn_B 928 SKE 930 (1139)
T ss_dssp HCC
T ss_pred hcc
Confidence 765
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.47 E-value=0.048 Score=30.45 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=27.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
..+|+.+.+.|+|++|.++.+..+++.|.+
T Consensus 81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 468999999999999999999999998876
No 248
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=93.45 E-value=0.18 Score=25.43 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=20.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
..-|+-....|+|++|+.+|+++++..-.
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34456677778888888888887776554
No 249
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=93.41 E-value=0.16 Score=25.39 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=25.7
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.+|.=|...|+|+.|+.+|+.+++...+.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999887775
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.35 E-value=0.23 Score=28.62 Aligned_cols=46 Identities=9% Similarity=-0.109 Sum_probs=33.4
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 11 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
.+.|+++.|.+..++. +. ...| ..+|......|+++-|.++|+++-
T Consensus 16 L~lg~l~~A~e~a~~l-------~~---~~~W----k~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------ND---SITW----ERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CC---HHHH----HHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh-------CC---HHHH----HHHHHHHHHcCChHHHHHHHHHhC
Confidence 3466766666654432 11 2445 999999999999999999999864
No 251
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=93.26 E-value=0.27 Score=25.40 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=24.6
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+..+...+..+.+.|+|++|+++.++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44567788999999999999999998874
No 252
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=93.07 E-value=0.22 Score=25.04 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=22.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
..-|+-..+.|+|++|+.+|+++++.+-.
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34466678888888888888888887654
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.86 E-value=1.2 Score=28.92 Aligned_cols=65 Identities=14% Similarity=-0.029 Sum_probs=46.7
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
...+|...+|+.+|...+.++........+. .......+.-.|..+...++|.+|-++|.++...
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~--~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKY--ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCc--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3556777888888888888875433333222 2333445677899999999999999999999864
No 254
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=92.71 E-value=0.48 Score=30.70 Aligned_cols=49 Identities=29% Similarity=0.194 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
++.+|.+|+......=.+. . .-.|..+|-.+++.+++.+|++.+..|-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~--H--vYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDH--H--IYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTC--C--SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC--C--ccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 8899999999888763221 1 12357789999999999999999988764
No 255
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=92.68 E-value=0.45 Score=33.93 Aligned_cols=69 Identities=19% Similarity=0.038 Sum_probs=50.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC--------------cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGE--------------IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+|.+|...|++++|..+|++|-.-....... .........|.....++.+.+.++.+++..+.|++
T Consensus 846 ~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 846 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6999999999999999999876322111000 00111234678889999999999999999999997
Q ss_pred hCC
Q psy8498 72 VAP 74 (90)
Q Consensus 72 ~~~ 74 (90)
...
T Consensus 926 ~~~ 928 (950)
T 4gq2_M 926 SKE 928 (950)
T ss_dssp TCC
T ss_pred hcc
Confidence 653
No 256
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=92.46 E-value=1 Score=27.66 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhhC-CCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhh
Q psy8498 17 TVAENCFMEALSKVKQLG-GEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALVV 72 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~ 72 (90)
+.|...|++|.++....- .++.++.......|.+.+|++ +++.++|....++|...
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 568899999999986543 122334444455777888876 89999999999999865
No 257
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.32 E-value=0.6 Score=31.65 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 23 FMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 23 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
++.|+++....+. ...| .++|..+.+.|+++.|.++|.++-
T Consensus 668 ~~~A~~~~~~~~~---~~~W----~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 668 LTLARDLLTDESA---EMKW----RALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHTTCCC---HHHH----HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCc---HhHH----HHHHHHHHHcCCHHHHHHHHHHcc
Confidence 4445555544322 2344 899999999999999999999963
No 258
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=92.07 E-value=0.35 Score=24.47 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=23.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
..-|+-....|+|++|+.+|.++++..-..
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 344666788899999999999999876543
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.94 E-value=1.6 Score=27.87 Aligned_cols=73 Identities=5% Similarity=-0.009 Sum_probs=51.3
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhhCCC------cc-------hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498 11 DKSFSYTVAENCFMEALSKVKQLGGE------II-------ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 11 ~~~g~~~~A~~~~~~al~~~~~~~~~------~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (90)
...|+.+.|...+++|+.+....--. +. .+.+..+...++..+...|++++++...++.+..+|-+-
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34689999999999999886432111 00 111223445668888999999999999999999999665
Q ss_pred HHHHHH
Q psy8498 78 STFCCI 83 (90)
Q Consensus 78 ~~~~~l 83 (90)
..+..+
T Consensus 206 ~~~~~l 211 (388)
T 2ff4_A 206 PLWTQL 211 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.92 E-value=1.6 Score=28.14 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=48.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHH-HhcCHHHHHHHHHHHHhh
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNR-KLKKYEEALEFHKQALVV 72 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 72 (90)
..+|...+++.++...+.+|.........+ ......+...-|..+. ..++|.+|..+|-++..-
T Consensus 146 ~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~--p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 146 SKTYHALSNLPKARAALTSARTTANAIYCP--PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhhccCCCC--HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 567889999999999999999887554233 1222334455688888 899999999999999753
No 261
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=91.61 E-value=0.41 Score=24.55 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=24.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+...|+-....|+|++|+.+|..+++.+-..
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3455677888999999999999999887654
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.53 E-value=1.8 Score=27.92 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=49.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
++-.++...+++..+..+..++-......++. ..........|..+...++|.+|..+|-.+.....
T Consensus 173 ~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~---~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 173 TIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW---ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT---HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH---HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 45567788999999999999998876655332 22223345567778889999999999999876543
No 263
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=91.26 E-value=0.82 Score=30.19 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
++.+|.+|+......=.+. . .-.|..+|-.+++.+++.+|+..+..+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~--H--vYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDE--H--IYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTC--C--SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC--C--ccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 7899999999888762221 1 12357789999999999999999988764
No 264
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=91.22 E-value=0.87 Score=29.98 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
++.+|++|+......=.+. . .-.|..+|-.+++.+++.+|++++..+-.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~--h--vYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDE--H--IYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTC--C--SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccC--c--ccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 7889999999888763221 1 22457789999999999999999998764
No 265
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=90.91 E-value=0.54 Score=23.52 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=22.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
...|+-....|+|++|+.+|..+++..-.
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34566677889999999999999987554
No 266
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=90.54 E-value=0.55 Score=25.18 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=23.3
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
...|+-....|+|++|+.+|..+++.+-..
T Consensus 22 v~~Ave~D~ag~y~eAl~lY~~Aie~l~~a 51 (117)
T 2cpt_A 22 ASKAAQEDKAGNYEEALQLYQHAVQYFLHV 51 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 345666778899999999999999876543
No 267
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=90.53 E-value=0.93 Score=22.73 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=14.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 50 GHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 50 g~~~~~~g~~~~A~~~~~~al~~ 72 (90)
|.-.=+.|++++|+.+|.++++.
T Consensus 26 Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHH
Confidence 33334457777777777777643
No 268
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=89.87 E-value=0.95 Score=23.37 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=23.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
..+..+...|+|++|+++.++|.....+-
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999776654
No 269
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=89.72 E-value=0.29 Score=24.13 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=21.7
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.+|-.+...|++++|..+|-+|+...+..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 46777777888888888888888776554
No 270
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=89.39 E-value=2.3 Score=25.57 Aligned_cols=54 Identities=13% Similarity=-0.060 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV 71 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 71 (90)
+.|...|++|+++....-++ .++.......|.+.+|++ +++.++|....++|..
T Consensus 147 e~a~~aY~~A~~iA~~~L~p-thPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPP-THPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46888999999998754222 233333445777888887 8999999999999874
No 271
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=89.28 E-value=0.56 Score=24.30 Aligned_cols=30 Identities=10% Similarity=-0.042 Sum_probs=22.8
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
..+|-.+...|+++.|+.+|-+|+.+.+..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 356777778888888888888888876654
No 272
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=89.19 E-value=2.4 Score=27.81 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=40.6
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhc-CHHHHHHHHHHHHhhCCCChHH
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVVAPMKAST 79 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 79 (90)
..+.++.+.|...|++| + .|. .. ..++...|.+-...+ +.+.|...|+++++..|+.+..
T Consensus 296 ~~r~~~~~~AR~i~~~A-~-~~~----~~----~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIEL-G-NEG----VG----PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHCHHHHHHHHHHH-T-TSC----CC----HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHcCCHHHHHHHHHHh-h-CCC----CC----hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 34567788888888888 2 221 11 223355566666666 5999999999999988876654
No 273
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=89.19 E-value=2.1 Score=24.92 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=30.8
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCCCCh
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (90)
....+.+|..+.-.++|.+|.+++.+|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 45568899999999999999999999999988654
No 274
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=88.89 E-value=1.3 Score=22.11 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=10.1
Q ss_pred HhcCHHHHHHHHHHHHh
Q psy8498 55 KLKKYEEALEFHKQALV 71 (90)
Q Consensus 55 ~~g~~~~A~~~~~~al~ 71 (90)
+.|++++|+.+|.++++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34666666666666654
No 275
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=88.64 E-value=1.4 Score=22.24 Aligned_cols=25 Identities=12% Similarity=0.107 Sum_probs=16.2
Q ss_pred hHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 48 NLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 48 ~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
..|.-.-..|++++|+.+|.++++.
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344445567777888888777754
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=87.73 E-value=1.5 Score=21.50 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=25.2
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
..+|..+...|++++|..+|-+|+...|+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 44788888899999999999999999874
No 277
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=87.17 E-value=1.8 Score=22.04 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=12.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHh
Q psy8498 51 HVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 51 ~~~~~~g~~~~A~~~~~~al~ 71 (90)
.-.-..|+|++|+.+|.++++
T Consensus 23 ve~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 23 VELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 333345666666666666664
No 278
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=87.14 E-value=3.4 Score=24.89 Aligned_cols=54 Identities=19% Similarity=0.114 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV 71 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 71 (90)
+.|...|++|.++....-++ .++.......|.+.+|++ +++.++|....++|..
T Consensus 150 e~a~~aY~~A~~iA~~~L~p-thPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPP-TNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56888999999998754332 223333445677777776 7999999999888874
No 279
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=87.05 E-value=2.6 Score=27.53 Aligned_cols=71 Identities=18% Similarity=0.020 Sum_probs=45.4
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC--------------cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE--------------IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 68 (90)
++.|+..+...++|.+|--++....++..=.... .........+......+.+.+.|+.|+..|+.
T Consensus 38 l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k~ 117 (436)
T 2yin_A 38 LYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKE 117 (436)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3677888999999999988874432221111000 00111223456667777888899999999999
Q ss_pred HHhhC
Q psy8498 69 ALVVA 73 (90)
Q Consensus 69 al~~~ 73 (90)
.+...
T Consensus 118 L~~~y 122 (436)
T 2yin_A 118 LAEQY 122 (436)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 280
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=86.80 E-value=3.8 Score=25.06 Aligned_cols=54 Identities=15% Similarity=0.007 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV 71 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 71 (90)
+.|...|++|.++....-++ .++.......|.+.+|+. +++.++|....++|..
T Consensus 152 e~a~~aY~~A~~iA~~~L~p-thPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAP-THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46888999999998754222 233333445777888887 7999999999998874
No 281
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=86.38 E-value=4 Score=24.97 Aligned_cols=54 Identities=13% Similarity=-0.060 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV 71 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 71 (90)
+.|...|++|.++....-++ .++.......|.+.+|++ +++.++|....++|..
T Consensus 173 e~a~~aY~~A~~iA~~~L~p-ThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPP-THPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56889999999988654332 223333445777888887 7999999999888874
No 282
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=86.14 E-value=1.1 Score=23.12 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=21.8
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
..+|..+...|+++.|+.+|-+|+...|+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34677777788888888888888877653
No 283
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.64 E-value=5.6 Score=25.89 Aligned_cols=63 Identities=8% Similarity=-0.031 Sum_probs=46.9
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
.++.+|...|++.+|...++....--... .. .......+.....++...+++.+|...++++.
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~-~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGS--ME-MSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhc--cc-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57899999999999999998876422111 11 12223455778889999999999999999975
No 284
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=85.60 E-value=4.4 Score=24.63 Aligned_cols=54 Identities=19% Similarity=0.039 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHH-hcCHHHHHHHHHHHHh
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEALEFHKQALV 71 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~ 71 (90)
+.|...|++|.++....-++ .++.......|.+.+|+. +++.++|....++|..
T Consensus 148 ~~a~~aY~~A~~iA~~~L~p-thPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQP-THPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56888999999998754332 233333445677888777 8999999999888874
No 285
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=85.59 E-value=1.7 Score=28.68 Aligned_cols=72 Identities=13% Similarity=-0.031 Sum_probs=50.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh-CCC-cchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh-CCCC
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL-GGE-IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-APMK 76 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~ 76 (90)
+++=.+|.+.++..-+...++.. +..... ..+ .....+...++.+|..+.-.++|.+|.+++.+|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i-~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNF-QPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTH-HHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-ccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34557788999988888777443 332110 001 112234556788999999999999999999999998 7754
No 286
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=85.56 E-value=2.2 Score=21.20 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=12.3
Q ss_pred HHhcCHHHHHHHHHHHHhh
Q psy8498 54 RKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 54 ~~~g~~~~A~~~~~~al~~ 72 (90)
-..|++++|+.+|.++++.
T Consensus 24 D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 3456777777777776653
No 287
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=85.52 E-value=2.3 Score=22.70 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=9.8
Q ss_pred hcCHHHHHHHHHHHHh
Q psy8498 56 LKKYEEALEFHKQALV 71 (90)
Q Consensus 56 ~g~~~~A~~~~~~al~ 71 (90)
.|+|++|+.+|.++++
T Consensus 31 ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4666666666666654
No 288
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=85.30 E-value=1 Score=22.41 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.7
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
..+|.=+...|+|+.|+.+|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 55788888999999999999999863
No 289
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=84.43 E-value=5 Score=29.58 Aligned_cols=62 Identities=6% Similarity=-0.113 Sum_probs=46.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVV 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~ 72 (90)
++-+-..|.+.|+.++|.++|++..+.. ..++ ..+|+.+=.++++.|+ .++|.+.+++...-
T Consensus 168 YNtLI~Glck~G~~~eA~~Lf~eM~~~G--~~PD------vvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 168 YNAVMLGWARQGAFKELVYVLFMVKDAG--LTPD------LLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT--CCCC------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCc------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 4455667899999999999999886431 1122 4567888889999998 47888999987754
No 290
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=84.24 E-value=1.8 Score=25.22 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=25.9
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
-+|..+...++|.+|.+++..|++..+..
T Consensus 19 YlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 19 YVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 47999999999999999999999987654
No 291
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.55 E-value=4.3 Score=22.90 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=27.9
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
++.+..+|.+|.+.|+..+|-+...+|.+-..
T Consensus 125 ~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 125 ASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 55668999999999999999999999987543
No 292
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=82.29 E-value=5.6 Score=23.33 Aligned_cols=72 Identities=8% Similarity=-0.025 Sum_probs=50.6
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHHhh--------CC--C--------------c-----------chh----hHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVKQL--------GG--E--------------I-----------IAD----KWEP 44 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~--~--------------~-----------~~~----~~~~ 44 (90)
..+|.++.+.|+-++|+.+|.....+.+-. .+ + . .++ ....
T Consensus 118 ~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ik 197 (242)
T 3kae_A 118 SLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVK 197 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHH
Confidence 457999999999999999999988765432 00 0 0 000 0000
Q ss_pred ------------HHHhHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q psy8498 45 ------------LLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75 (90)
Q Consensus 45 ------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 75 (90)
...+.+..+..+|-.+++.++|.+....+|.
T Consensus 198 kY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 198 KYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 0134478899999999999999999998885
No 293
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=81.42 E-value=4.9 Score=22.75 Aligned_cols=65 Identities=8% Similarity=0.031 Sum_probs=45.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhH-HHHH-HhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 6 VELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKW-EPLL-NNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 6 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
-|..+...|+|-+|=+.++.+.+..+....+ ...+ -.+. ...|..+.+.|+...|...+.+++..
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~e--r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTE--SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHH--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchH--HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4667788899999999999988865332111 1122 1123 44566777789999999999999863
No 294
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.09 E-value=5.1 Score=21.45 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy8498 14 FSYTVAENCFMEALSKVK 31 (90)
Q Consensus 14 g~~~~A~~~~~~al~~~~ 31 (90)
..|++|..+..+||++.+
T Consensus 17 ~~h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 445666666666666654
No 295
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.93 E-value=5.1 Score=27.43 Aligned_cols=53 Identities=9% Similarity=-0.096 Sum_probs=38.6
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 10 SDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 10 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
....|+++.|..+|.+.-..... .....+.+|.++..+|+.++|..+|+++..
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~---------~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKE---------KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGG---------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHccccccc---------cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34568999998888654331111 123357899999999999999999999875
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=79.00 E-value=6.5 Score=22.01 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=27.5
Q ss_pred HHHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 42 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 42 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
.+.-|...|..+...|++.+|.+.|+.+++-.
T Consensus 100 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 100 SSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 35556778999999999999999999999864
No 297
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.57 E-value=6.4 Score=21.10 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=27.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+.+-|+..-+.|+.+.|+.+|++.+......
T Consensus 25 ~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~G 55 (116)
T 2dl1_A 25 FVNKGLNTDELGQKEEAKNYYKQGIGHLLRG 55 (116)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHh
Confidence 5567888889999999999999999888775
No 298
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.43 E-value=6.5 Score=23.13 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=27.0
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+.-|...|..+...|++.+|.+.|+.+++-.
T Consensus 115 AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 115 SLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4456778999999999999999999999754
No 299
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=75.33 E-value=3.1 Score=21.22 Aligned_cols=19 Identities=16% Similarity=-0.123 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy8498 14 FSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 14 g~~~~A~~~~~~al~~~~~ 32 (90)
..|+.|..+..+++++.+.
T Consensus 11 ~~h~~AF~~Is~aL~~DE~ 29 (89)
T 3eab_A 11 VFHKQAFEYISIALRIDED 29 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3456666666666666655
No 300
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=75.18 E-value=11 Score=24.60 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=44.2
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHh-------hCCCc---------------------------chhhHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQ-------LGGEI---------------------------IADKWEPLLNN 48 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~---------------------------~~~~~~~~~~~ 48 (90)
+++|+..+...|+|.+|--++.....+.-+ ..++. ....+...+..
T Consensus 14 l~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll~~ 93 (428)
T 2wm9_A 14 LDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQ 93 (428)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHHHHH
Confidence 568899999999999999998754443222 11100 01111123455
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 49 LGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 49 lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
....+.+.+.|+.|+..|+..+..
T Consensus 94 ai~~f~kg~~~E~ai~~~k~L~~~ 117 (428)
T 2wm9_A 94 CADGLWKAERYELIADIYKLIIPI 117 (428)
T ss_dssp HHHHHHHTTCGGGHHHHHTTTHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHH
Confidence 566677777788888888877654
No 301
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=74.55 E-value=13 Score=24.14 Aligned_cols=52 Identities=12% Similarity=0.046 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
-+.-++.|+...|.......... ..++.-+|.+|.-.|+|++|+++.++++.
T Consensus 167 I~~DL~~A~~~L~~~~~~gr~tk-~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 167 IIETLEEAVTLMSEEKNNGRMNK-YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHCCCSCCTTSCCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCeecH-HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 34445556665554322211222 23556789999999999999999999985
No 302
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.15 E-value=8.9 Score=21.73 Aligned_cols=31 Identities=3% Similarity=0.064 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+.-|...|..+...|++.+|.+.|+.+++-.
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4556788999999999999999999999865
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=73.05 E-value=8.2 Score=23.05 Aligned_cols=31 Identities=6% Similarity=0.029 Sum_probs=27.1
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhC
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 73 (90)
+.-|...|..+...|++.+|.+.|+.+++-.
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4556778999999999999999999999764
No 304
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.00 E-value=17 Score=23.29 Aligned_cols=66 Identities=3% Similarity=-0.119 Sum_probs=49.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
.++..|...|+.+.|....+++-......++.+ .......+...+..+...+++..+-..+-..+.
T Consensus 132 ~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~-~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 132 EIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP-LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 467889999999999999999988777654321 223344556677888889999888777777664
No 305
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=71.38 E-value=18 Score=23.54 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 20 ENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 20 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+.-+++|+...|.......... ..++.-+|.+|.-+|+|++|+++.++++.
T Consensus 174 ~~DL~~A~~~L~~~~~~gr~tk-~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 174 ISDLKNSTELLSGDFNKGKVNR-WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHSCCSCCTTSCCH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccCCCeeeH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3345556655554322211122 23456789999999999999999999986
No 306
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=69.36 E-value=11 Score=20.62 Aligned_cols=20 Identities=10% Similarity=-0.066 Sum_probs=15.6
Q ss_pred hCCHHHHHHHHHHHHHHHHh
Q psy8498 13 SFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 13 ~g~~~~A~~~~~~al~~~~~ 32 (90)
.++.+++..++++|.+-...
T Consensus 3 ~~~~ee~~~wl~~A~~dl~~ 22 (141)
T 3o10_A 3 VGNPVEARRWLRQARANFSA 22 (141)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhhhH
Confidence 46889999999998876544
No 307
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=67.36 E-value=5.5 Score=16.62 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q psy8498 16 YTVAENCFMEALSK 29 (90)
Q Consensus 16 ~~~A~~~~~~al~~ 29 (90)
|++|+..|+.+++.
T Consensus 18 yDKAVaSfk~alk~ 31 (37)
T 3s6n_M 18 YDKAVASFKHALKN 31 (37)
T ss_pred HHHHHHHHHHHHhc
Confidence 77788888777764
No 308
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=65.24 E-value=9.8 Score=25.12 Aligned_cols=29 Identities=14% Similarity=-0.155 Sum_probs=25.8
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHH-HHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSK-VKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~-~~~~ 33 (90)
-+|..+...++|.+|.+++..|++. .|..
T Consensus 225 YlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 225 LLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 4799999999999999999999999 6643
No 309
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=63.00 E-value=30 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.7
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++.-+|.+|.-+|+|++|+.+.++++..
T Consensus 205 A~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 205 VLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4567899999999999999999999864
No 310
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.92 E-value=24 Score=21.76 Aligned_cols=69 Identities=10% Similarity=-0.066 Sum_probs=47.9
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCC---------------------------cchhhHHHHHHhHHHHHHHhcCH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGE---------------------------IIADKWEPLLNNLGHVNRKLKKY 59 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------~~~~~~~~~~~~lg~~~~~~g~~ 59 (90)
-..+.-.|++++|.+-++...++.|..... .....|... .--+......|+.
T Consensus 38 fqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~~~P~~~g~~~~w~~~-ll~Al~~~~~G~~ 116 (273)
T 1zbp_A 38 IELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS-LVSFNLSMVSQDY 116 (273)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHH-HHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH-HHHHHHHhhcCCH
Confidence 345777899999999988888887774110 012223222 2246667778999
Q ss_pred HHHHHHHHHHHhhCCCC
Q psy8498 60 EEALEFHKQALVVAPMK 76 (90)
Q Consensus 60 ~~A~~~~~~al~~~~~~ 76 (90)
++|.+.-.++++..|..
T Consensus 117 ~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 117 EQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhcCccc
Confidence 99999999999887743
No 311
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.40 E-value=15 Score=19.47 Aligned_cols=20 Identities=10% Similarity=-0.084 Sum_probs=16.0
Q ss_pred HHHHHHHhcCHHHHHHHHHH
Q psy8498 49 LGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 49 lg~~~~~~g~~~~A~~~~~~ 68 (90)
++.+-.+.|..+++.....+
T Consensus 75 ~ALce~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 75 LALCEYRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHH
Confidence 78888899998888877643
No 312
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=61.14 E-value=21 Score=23.32 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 44 PLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
.++.-+|.+|.-.|+|++|+++.++++..
T Consensus 203 aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 203 AAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 35567899999999999999999999864
No 313
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=60.34 E-value=33 Score=22.42 Aligned_cols=29 Identities=10% Similarity=-0.064 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 44 PLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 44 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
.++.-+|.+|..+|+|++|+++.++++..
T Consensus 192 aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 192 VVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35577899999999999999999999854
No 314
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=60.06 E-value=19 Score=19.85 Aligned_cols=29 Identities=3% Similarity=-0.156 Sum_probs=24.9
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVK 31 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 31 (90)
+...|.+|...|+.+.|-..|.+...+.-
T Consensus 43 llr~A~~y~~egd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 43 IIRMASIYSEEGNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999877764
No 315
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.76 E-value=13 Score=25.06 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=25.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
-+|.++.-+++|.+|.+++..|++..|..
T Consensus 275 Y~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 275 YLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 46999999999999999999999877654
No 316
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=56.12 E-value=41 Score=22.24 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=24.6
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++.-+|.++...++|++|+++.++++..
T Consensus 184 A~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 184 AYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999853
No 317
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=55.23 E-value=41 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.7
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++.-+|.+|.-.|+|++|+++.++++..
T Consensus 199 A~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 199 AYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 5567899999999999999999999864
No 318
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=54.67 E-value=21 Score=18.37 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHH-HhHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLL-NNLGHVNRK 55 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~lg~~~~~ 55 (90)
|.-+.+.++|.+|...|+++...-+. +....+. +.++.|-.+
T Consensus 60 ak~~y~~~ny~ea~~l~~k~~n~ten-------~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 60 GKDLFETANYGEALVFFEKALNLSDN-------EEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHccccC-------HHHHHHHHHHHHHHHHH
Confidence 45577899999999999998865321 1222333 566766554
No 319
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=54.02 E-value=25 Score=19.06 Aligned_cols=61 Identities=8% Similarity=-0.049 Sum_probs=38.5
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+......+...++.+..+..++..-+...+. +. +.........-..+..+|.+++++-...
T Consensus 43 LeeASrlyf~~~n~~~m~~~L~pLh~~l~~~-Pe--------T~~E~sF~~~fG~~L~~A~~~~~~y~~t 103 (126)
T 2npu_A 43 LEEASRLYFGERNVKGMFEVLEPLHAMMERG-PQ--------TLKETSFNQAYGRDLMEAQEWCRKYMKS 103 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHccC-CC--------CHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4456677888899998888887776766653 11 1133333333445667777777776543
No 320
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=53.36 E-value=39 Score=21.14 Aligned_cols=25 Identities=20% Similarity=0.036 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHK 67 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~ 67 (90)
+..+..+|..+.+.|++.+|..+|-
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4567889999999999999999885
No 321
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=52.89 E-value=2.9 Score=25.55 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=0.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
.-|+-+-..|+|++|..+|+++++..-..
T Consensus 28 ~~AVe~D~~g~y~eAl~lY~eaIe~Ll~a 56 (257)
T 2ymb_A 28 KRAVELDSESRYPQALVCYQEGIDLLLQV 56 (257)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34556677888899988888888766543
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.03 E-value=8.9 Score=27.52 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=22.2
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
+-+|.++...|++++|..+|++|-
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 669999999999999999999865
No 323
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=50.82 E-value=35 Score=22.40 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 19 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
-+.-++.|+...|.......... ..++.-+|.+|...++|++|+++.++++.
T Consensus 157 I~~DL~~A~~~Lp~~~~~gr~tk-~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 157 AKEDLKTAASLLPITNKIGKPTQ-GAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHSCSSCSTTSCCH-HHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHhCCCCCCCCcccH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33445556655554321111222 23456689999999999999999998874
No 324
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=50.55 E-value=59 Score=22.42 Aligned_cols=42 Identities=7% Similarity=-0.039 Sum_probs=35.0
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKEG 88 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 88 (90)
...|......|+|.-|.+....++..+|++..+..-.+.++.
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~ 494 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALE 494 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 445777788999999999999999999999888777666654
No 325
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.68 E-value=16 Score=21.93 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=20.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHH
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKV 30 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~ 30 (90)
-.++.++|.|++|++.+++.+.-.
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHhcchHHHHHHHHHHhcCC
Confidence 456889999999999999988743
No 326
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=47.63 E-value=15 Score=19.40 Aligned_cols=21 Identities=5% Similarity=-0.276 Sum_probs=16.8
Q ss_pred hHHHHHHHhcCHHHHHHHHHH
Q psy8498 48 NLGHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 48 ~lg~~~~~~g~~~~A~~~~~~ 68 (90)
.++.+-.+.|..+++.....+
T Consensus 73 w~ALce~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 73 WFALCEWHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHH
Confidence 378888999999888887744
No 327
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=47.38 E-value=64 Score=21.90 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhC
Q psy8498 17 TVAENCFMEALSKVKQLG 34 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~ 34 (90)
++|+++|++|++...+..
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~ 466 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAA 466 (526)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 457888888888887764
No 328
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=46.61 E-value=28 Score=17.61 Aligned_cols=61 Identities=13% Similarity=-0.007 Sum_probs=42.2
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhH-HHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKW-EPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
.-|..+...|+|-+|=+.++......+... ...+ -.+....|..+.+.|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~----~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEE----RRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 346778888999999999999998763321 1111 11234446666667887 9999999986
No 329
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=45.37 E-value=24 Score=20.90 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=19.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
-.++.+.|.+++|++.+++.+.-.+.+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----C
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCc
Confidence 467999999999999999988866554
No 330
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=45.11 E-value=4.5 Score=26.24 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=0.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
.-|.-+.+.|+|++|+.+|+++++..-.
T Consensus 16 ~~Av~~D~~g~~~eA~~~Y~~a~~~l~~ 43 (444)
T 2zan_A 16 SKAAQEDKAGNYEEALQLYQHAVQYFLH 43 (444)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999999987665
No 331
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=44.49 E-value=58 Score=20.63 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=24.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
..|.-+...|++++|+..|+..+-..+-.
T Consensus 119 k~gyk~~t~gKf~eAl~~Fr~iL~~i~l~ 147 (325)
T 3mv2_A 119 NEGYKNFKLNKPDIAIECFREAIYRITLL 147 (325)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhee
Confidence 34667788999999999999999887754
No 332
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=43.89 E-value=34 Score=17.82 Aligned_cols=25 Identities=8% Similarity=-0.174 Sum_probs=19.4
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..-|.-..+.|+|++|.+..++|-+
T Consensus 24 ~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 24 LLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4456667788999999998888764
No 333
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=42.75 E-value=34 Score=17.41 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 17 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 17 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
++--+.|.++..+.|+. .............+.--.+++..|.+.|.+-++
T Consensus 33 ~~LqeLy~kv~~lRPKL-----~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~lLE 82 (91)
T 2pjw_V 33 SKLQNLAQRVFASKARL-----NYALNDKAQKYNTLIEMNGKISEIMNIYDRLLE 82 (91)
T ss_dssp THHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777766 233333335555566666777888888888765
No 334
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=42.68 E-value=36 Score=17.68 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=19.1
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..-+.-..+.|+|++|.+..++|-+
T Consensus 22 ~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 22 AYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4456667788999999988888764
No 335
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=42.24 E-value=31 Score=22.41 Aligned_cols=28 Identities=4% Similarity=-0.266 Sum_probs=22.4
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKVK 31 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~~ 31 (90)
.-++.+|.-+|+|++|..+.++++....
T Consensus 194 allarvyL~~~~~~~A~~~a~~vi~~~~ 221 (454)
T 3myv_A 194 ALLARIYLYHDDNRKAFDLADQLIKDAD 221 (454)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhCCC
Confidence 3468888889999999999999887543
No 336
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=41.58 E-value=31 Score=22.70 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=21.7
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSK 29 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~ 29 (90)
.-++.+|.-+++|++|..+.++++..
T Consensus 207 allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 207 GILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34688888899999999999998864
No 337
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=40.60 E-value=40 Score=17.69 Aligned_cols=25 Identities=24% Similarity=-0.106 Sum_probs=17.9
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..-|.-..+.|+|++|.+..++|-+
T Consensus 26 ~~eAl~~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 26 AMEALQFAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345556678888888888888753
No 338
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=40.40 E-value=34 Score=22.27 Aligned_cols=27 Identities=11% Similarity=-0.128 Sum_probs=21.8
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8498 4 DNVELSSDKSFSYTVAENCFMEALSKV 30 (90)
Q Consensus 4 ~~l~~~~~~~g~~~~A~~~~~~al~~~ 30 (90)
.-++.+|.-+|+|++|....+++++..
T Consensus 200 allArvyL~~~~~~~A~~~a~~vi~~~ 226 (461)
T 3kez_A 200 TLLSRVYLYKGEYNEALTMAENAIKGA 226 (461)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 346788888899999999999888753
No 339
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=40.05 E-value=71 Score=20.34 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=21.6
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
.++..|......+++.+++..++.|.+.
T Consensus 255 A~y~~a~~~~~~~k~GeaIa~L~~A~~~ 282 (376)
T 3r9m_A 255 AYCYHGETLLASDKCGEAIRSLQEAEKL 282 (376)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4456677788889999999998887743
No 340
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=39.17 E-value=36 Score=22.18 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=19.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSK 29 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~ 29 (90)
-++.+|.-+|+|++|....+++++.
T Consensus 207 llarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 207 LLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4577888888888888888888764
No 341
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=38.85 E-value=46 Score=17.84 Aligned_cols=25 Identities=16% Similarity=-0.081 Sum_probs=19.7
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 47 NNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 47 ~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
..-|.-..+.|+|++|.+..++|-+
T Consensus 41 ~~eAl~~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 41 VHEAFDAMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667789999999999998753
No 342
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=38.62 E-value=50 Score=18.21 Aligned_cols=31 Identities=6% Similarity=-0.061 Sum_probs=25.7
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+...|.+|...||.+.|-.+|.+-+.+....
T Consensus 45 L~r~A~~y~~EGd~E~AYilymRy~~L~~kI 75 (144)
T 2a9u_A 45 IFKTAEECRLDRDEERAYVLYMKYVTVYNLI 75 (144)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999988877544
No 343
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=37.80 E-value=41 Score=16.91 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=18.7
Q ss_pred cCHHHHHHHHHHHHhhCCCChHHHHH
Q psy8498 57 KKYEEALEFHKQALVVAPMKASTFCC 82 (90)
Q Consensus 57 g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (90)
+...+++....++|+.+|++|..+..
T Consensus 24 ~~~~~~v~~Ai~~L~~~PsnPa~LAe 49 (85)
T 2ca5_A 24 QTLQGELTLALDKLAKNPSNPQLLAE 49 (85)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34456777777788889988876644
No 344
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=37.20 E-value=17 Score=26.53 Aligned_cols=59 Identities=8% Similarity=-0.098 Sum_probs=40.6
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 67 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 67 (90)
.+..++.+.+-++.+++.-+.|++..+..... .....+.++-..+...|+|++|-....
T Consensus 904 hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~----~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 904 HLSKKLFEESAYIDALEFSLLADASKETDDED----LSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH----HHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCCChh----hHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 45667778889999999999998865433111 111234777778888999999866553
No 345
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=37.14 E-value=43 Score=17.05 Aligned_cols=61 Identities=8% Similarity=-0.042 Sum_probs=38.1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCCcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
+.+.+..|...++.+.....++...+...+. ++ . ....+....-..+..+|.++.++-...
T Consensus 13 LeeAsr~~f~~~n~~~m~~~L~pLh~~l~~~-pe----T----~~E~sF~~~fG~~L~~A~~~~~~y~~t 73 (94)
T 3fap_B 13 LEEASRLYFGERNVKGMFEVLEPLHAMMERG-PQ----T----LKETSFNQAYGRDLMEAQEWCRKYMKS 73 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-CC----S----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHcCC-CC----C----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677888899999998888888877664 11 1 123333333344556677776665544
No 346
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=37.00 E-value=41 Score=21.96 Aligned_cols=25 Identities=12% Similarity=-0.047 Sum_probs=19.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHH
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSK 29 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~ 29 (90)
-++.+|.-+|+|++|..+.++++..
T Consensus 202 llarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 202 VLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3577777788888888888888764
No 347
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=35.02 E-value=87 Score=19.88 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHH
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHK 67 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~ 67 (90)
+..+..+|..|.+.+++.+|..+|-
T Consensus 136 p~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 136 PELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHH
Confidence 4456788999999999999998884
No 348
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=32.41 E-value=36 Score=16.11 Aligned_cols=15 Identities=13% Similarity=-0.095 Sum_probs=12.0
Q ss_pred hhCCHHHHHHHHHHH
Q psy8498 12 KSFSYTVAENCFMEA 26 (90)
Q Consensus 12 ~~g~~~~A~~~~~~a 26 (90)
..||.++|+.++++-
T Consensus 34 ~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 34 CGGDLKQAEIWLHKE 48 (64)
T ss_dssp HTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 468999999998753
No 349
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=31.72 E-value=56 Score=16.69 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=18.8
Q ss_pred cCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy8498 57 KKYEEALEFHKQALVVAPMKASTFCCI 83 (90)
Q Consensus 57 g~~~~A~~~~~~al~~~~~~~~~~~~l 83 (90)
+...+++.....+++.+|++|..+..+
T Consensus 30 ~~~~~~l~~Al~~L~~~psNPa~LAe~ 56 (92)
T 2g0u_A 30 KDLNKQLQDAQANLTKNPSDPTALANY 56 (92)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 344566666677778899988876554
No 350
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=31.69 E-value=1.1e+02 Score=20.28 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=24.2
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++.-+|.++.-.++|++|.++.++++..
T Consensus 200 A~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 200 ALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4566899999999999999999999863
No 351
>1u6l_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.81A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=30.97 E-value=36 Score=18.18 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=13.2
Q ss_pred cCHHHHHHHHHHHHh
Q psy8498 57 KKYEEALEFHKQALV 71 (90)
Q Consensus 57 g~~~~A~~~~~~al~ 71 (90)
|+.++|+++|++++-
T Consensus 13 ~d~~~A~~FY~~vfG 27 (149)
T 1u6l_A 13 GNCREAFSCYHQHLG 27 (149)
T ss_dssp SCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhC
Confidence 689999999999873
No 352
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=29.59 E-value=1.2e+02 Score=19.84 Aligned_cols=27 Identities=15% Similarity=-0.121 Sum_probs=17.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
...+.+.+.|+.|+.+++..+...+..
T Consensus 99 i~~f~kg~~~E~ai~l~k~L~~~yE~~ 125 (436)
T 2yin_A 99 IGYFDKGKMWEEAISLCKELAEQYEME 125 (436)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777666653
No 353
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=29.40 E-value=32 Score=13.16 Aligned_cols=12 Identities=58% Similarity=0.744 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHh
Q psy8498 60 EEALEFHKQALV 71 (90)
Q Consensus 60 ~~A~~~~~~al~ 71 (90)
+.|++|.+++++
T Consensus 4 esaleyaqqale 15 (30)
T 3s0r_A 4 ESALEYAQQALE 15 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 456777777765
No 354
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=29.26 E-value=78 Score=18.11 Aligned_cols=25 Identities=12% Similarity=-0.003 Sum_probs=19.8
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 8 LSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 8 ~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
..+.+.|+|++|.++..+..+....
T Consensus 40 ~GLlql~~ydea~~yI~~~~~~~q~ 64 (192)
T 1ixm_A 40 KGNLSLQKYDRVFEMIEEMVIDAKH 64 (192)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3467789999999999887776544
No 355
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=28.94 E-value=96 Score=20.48 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=19.8
Q ss_pred HHhHHHHHH------HhcCHHHHHHHHHHHHh
Q psy8498 46 LNNLGHVNR------KLKKYEEALEFHKQALV 71 (90)
Q Consensus 46 ~~~lg~~~~------~~g~~~~A~~~~~~al~ 71 (90)
+.-++.+|. ..++|++|+++.++++.
T Consensus 191 ~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 191 SALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 344555555 57899999999999984
No 356
>3mfn_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 2.02A {Dyadobacter fermentans}
Probab=28.24 E-value=66 Score=17.86 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=37.9
Q ss_pred hhCCHHHHHHHHHHHHHHHHhhCCCcc-------------hhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 12 KSFSYTVAENCFMEALSKVKQLGGEII-------------ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 12 ~~g~~~~A~~~~~~al~~~~~~~~~~~-------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
....+.+|..++..|-++..+...... .....-++..+-.++.+.++-+...++|+..|.-
T Consensus 31 ~~~~~~eArryLdnAkeIL~eka~Ke~~~Y~d~KYVKmAG~tAYsGvL~aLD~~lG~K~~grk~vDwY~~~L~k 104 (157)
T 3mfn_A 31 AQEAVIEAKRYLNNAKDILRDKGGKEDGFYQDSKYVKMAGHTAYSGVLFALDHYFGKKTKGRKDVDWYKSNLAQ 104 (157)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHSCEETTEECCHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCCCHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccccCcccchHHHHhccchhHHHHHHHHHHHhccccCCCCChHHHHHHHHh
Confidence 345678899999999999988744310 1112223344555555555556777888876643
No 357
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=27.21 E-value=64 Score=18.27 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=15.7
Q ss_pred HHHHHHhcCHHHHHHHHHH
Q psy8498 50 GHVNRKLKKYEEALEFHKQ 68 (90)
Q Consensus 50 g~~~~~~g~~~~A~~~~~~ 68 (90)
=+++...|++++|++..++
T Consensus 80 YWIyiGRg~~~eAlDiA~~ 98 (161)
T 2ynq_A 80 YWIYIGRSQSEEALELART 98 (161)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHh
Confidence 4667779999999998776
No 358
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=26.27 E-value=75 Score=16.44 Aligned_cols=20 Identities=10% Similarity=0.018 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q psy8498 14 FSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 14 g~~~~A~~~~~~al~~~~~~ 33 (90)
-.|++|+.-+++.++.....
T Consensus 30 ~sFEeal~eLEeIV~~LE~g 49 (100)
T 1vp7_A 30 QDFETALAELESLVSAMENG 49 (100)
T ss_dssp CSHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcC
Confidence 34777777777777766654
No 359
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=26.01 E-value=1.3e+02 Score=19.14 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhh
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALVV 72 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 72 (90)
++..|....+.+++.+|+.+++.|.+.
T Consensus 278 ~y~~a~~~~e~~k~GeaIa~L~~A~~~ 304 (380)
T 3c3r_A 278 EYHQSILAKQQKKFGEEIARLQHAAEL 304 (380)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 355677788888999999998888753
No 360
>1tsj_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, nysgxrc; 2.60A {Staphylococcus aureus subsp} SCOP: d.32.1.7
Probab=25.60 E-value=39 Score=18.02 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=12.9
Q ss_pred cCHHHHHHHHHHHH
Q psy8498 57 KKYEEALEFHKQAL 70 (90)
Q Consensus 57 g~~~~A~~~~~~al 70 (90)
|+.++|+++|++++
T Consensus 14 ~d~~eA~~FY~~~f 27 (139)
T 1tsj_A 14 NQAEEAVKLYTSLF 27 (139)
T ss_dssp SCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHc
Confidence 68899999999987
No 361
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=25.31 E-value=1.5e+02 Score=19.57 Aligned_cols=32 Identities=9% Similarity=-0.090 Sum_probs=27.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGE 36 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 36 (90)
-+|-.+.+.+++.+|+.++-+|-......+..
T Consensus 301 ylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~ 332 (472)
T 3re2_A 301 YLGGYYYRKKKYYEAIASWVDAGYVAGKYNYS 332 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHcCCC
Confidence 46778999999999999999999988877554
No 362
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.28 E-value=1.6e+02 Score=19.85 Aligned_cols=32 Identities=3% Similarity=-0.067 Sum_probs=27.1
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCC
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQLGGE 36 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 36 (90)
-+|-.+.+.+++.+|+..+-+|-......+..
T Consensus 323 YlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~ 354 (550)
T 3u84_A 323 YLAGYHCRNRNVREALQAWADTATVIQDYNYC 354 (550)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred ecchhhhhcchHHHHHHHHHHHHHHHHHcCCC
Confidence 46778999999999999999999988877543
No 363
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.23 E-value=1.4e+02 Score=18.97 Aligned_cols=63 Identities=8% Similarity=-0.000 Sum_probs=42.2
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhhCC--------CcchhhHHHHHHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 9 SSDKSFSYTVAENCFMEALSKVKQLGG--------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 9 ~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
+.....+.++|.+.+++..+....... ....+....+...++..|.+.|+.++|..+.+++-.
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455677889999888876543322100 001122334557789999999999999999999864
No 364
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=23.81 E-value=94 Score=16.68 Aligned_cols=29 Identities=3% Similarity=-0.148 Sum_probs=24.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+.+......|++++.-....||.++....
T Consensus 41 ~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L 69 (131)
T 3iqc_A 41 SQAKRCIENEDIEKKIYYINRVTDIFTEL 69 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999988765
No 365
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.24 E-value=1.5e+02 Score=18.76 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=23.8
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+-|.-+...|++++|+..|+..+-..+-.
T Consensus 107 k~gyk~~t~gKf~eAl~~Fr~iL~~i~l~ 135 (320)
T 3mkr_B 107 QLCYQLTTVGKFEEAVEKFRSILLSVPLL 135 (320)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhhe
Confidence 44667788999999999999998887643
No 366
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=22.38 E-value=1.5e+02 Score=19.39 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=20.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhhC
Q psy8498 7 ELSSDKSFSYTVAENCFMEALSKVKQLG 34 (90)
Q Consensus 7 ~~~~~~~g~~~~A~~~~~~al~~~~~~~ 34 (90)
|....+.||++.|...++.|.++.-+.+
T Consensus 389 a~~~~~~gd~~~A~~~L~~A~~~~~~~g 416 (464)
T 4fx5_A 389 GLDAQAAGDLDTATARLGRAMDLAVESG 416 (464)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 3556677888888888888887776653
No 367
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=21.88 E-value=59 Score=20.97 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=23.0
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHH
Q psy8498 45 LLNNLGHVNRKLKKYEEALEFHKQAL 70 (90)
Q Consensus 45 ~~~~lg~~~~~~g~~~~A~~~~~~al 70 (90)
++.-+|.+|.-.|+|++|+++.++++
T Consensus 203 A~allarvyL~~~~~~~A~~~a~~vi 228 (441)
T 3l22_A 203 ANMLKMRVYMAMNEWDKAITAGELVT 228 (441)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 45668999999999999999999887
No 368
>2fj6_A Hypothetical UPF0346 protein YOZE; SR391, structure, autostructure, northeast structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.60.15.1
Probab=21.86 E-value=73 Score=15.88 Aligned_cols=30 Identities=13% Similarity=0.136 Sum_probs=17.3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy8498 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQ 32 (90)
Q Consensus 3 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 32 (90)
++.|..-....+.|..++..|.++.+....
T Consensus 40 ~~eIs~Yle~n~~y~~sm~iFD~~We~Y~~ 69 (82)
T 2fj6_A 40 YHEISSYLELNADYLHTMATFDEAWDQYES 69 (82)
T ss_dssp HHHHHHHHHTSHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccchHHHHHHHHHHHHH
Confidence 344445555556666666666666665544
No 369
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=21.82 E-value=1.2e+02 Score=16.98 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=22.1
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhhCC
Q psy8498 43 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74 (90)
Q Consensus 43 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 74 (90)
......+..++....+....++.|...+..+|
T Consensus 90 ~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP 121 (175)
T 4abx_A 90 MQLQNELRAALESVQAIAGELRDVAEGSAADP 121 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 33446677777777777777777777776666
No 370
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=21.50 E-value=1.1e+02 Score=16.73 Aligned_cols=29 Identities=7% Similarity=0.110 Sum_probs=23.8
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q psy8498 5 NVELSSDKSFSYTVAENCFMEALSKVKQL 33 (90)
Q Consensus 5 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 33 (90)
+.+......|++++.-....||.++....
T Consensus 38 ~~A~~aie~~d~~~k~~~i~KA~~Ii~eL 66 (145)
T 1vh6_A 38 RLAAQAIENDDMERKNENLIKAQNIIQEL 66 (145)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45666778999999999999999888665
No 371
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=21.45 E-value=51 Score=17.10 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHH
Q psy8498 58 KYEEALEFHKQAL 70 (90)
Q Consensus 58 ~~~~A~~~~~~al 70 (90)
+.++|+++|++++
T Consensus 17 d~~~A~~FY~~~f 29 (136)
T 1u7i_A 17 QAEAAMNFYLSLF 29 (136)
T ss_dssp CHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHc
Confidence 8999999999987
No 372
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=21.38 E-value=1.5e+02 Score=19.37 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=23.3
Q ss_pred HHHhHHHHHHHhc---------CHHHHHHHHHHHHh
Q psy8498 45 LLNNLGHVNRKLK---------KYEEALEFHKQALV 71 (90)
Q Consensus 45 ~~~~lg~~~~~~g---------~~~~A~~~~~~al~ 71 (90)
++.-+|.+|.-.+ +|++|+++.++++.
T Consensus 190 A~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~ 225 (482)
T 3otn_A 190 VKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIK 225 (482)
T ss_dssp HHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHc
Confidence 4566888888888 99999999999986
No 373
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=20.98 E-value=1.7e+02 Score=18.55 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=18.9
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHh
Q psy8498 46 LNNLGHVNRKLKKYEEALEFHKQALV 71 (90)
Q Consensus 46 ~~~lg~~~~~~g~~~~A~~~~~~al~ 71 (90)
++..|......+++.+++.+++.|..
T Consensus 255 ~y~~a~~~~e~~k~GeaIa~L~~A~~ 280 (363)
T 3rau_A 255 HLHMGKQAEEQQKFGERVAYFQSALD 280 (363)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhhhHHHHHHHHHHHHH
Confidence 34456667777888888888877764
Done!