RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8498
(90 letters)
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 66.2 bits (162), Expect = 1e-14
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
+ AE F++AL K+K +G E+ DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P
Sbjct: 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268
Query: 76 KASTFCCI 83
AST+ I
Sbjct: 269 NASTYSAI 276
Score = 40.0 bits (94), Expect = 2e-05
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+AE F +ALS IA + +++ +G V + +++ A ++ AL
Sbjct: 175 SKLAERFFSQALS---------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224
Score = 36.5 bits (85), Expect = 4e-04
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
+ +G + A F QAL +AP +
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199
Score = 30.3 bits (69), Expect = 0.049
Identities = 5/68 (7%), Positives = 15/68 (22%), Gaps = 9/68 (13%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
+ + + L +L K E + + + P
Sbjct: 38 FKMCYKLTSVVME---------KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88
Query: 76 KASTFCCI 83
++ +
Sbjct: 89 NPVSWFAV 96
Score = 30.3 bits (69), Expect = 0.057
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
GH ++++A+ + A +
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMK 156
Score = 26.9 bits (60), Expect = 0.82
Identities = 2/30 (6%), Positives = 10/30 (33%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
++ +L + ++ + + P
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDP 53
Score = 24.2 bits (53), Expect = 7.6
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 47 NNLGHVNRKL-KKYEEALEFHKQALVVAP 74
+G + K E A + +A +
Sbjct: 94 FAVGCYYLMVGHKNEHARRYLSKATTLEK 122
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 57.9 bits (140), Expect = 9e-12
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
A N F AL VK+ W NLGH RKLK Y+ A++ Q L+++
Sbjct: 491 MQTAINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548
Query: 76 KASTFCCI 83
A+ I
Sbjct: 549 DANVHTAI 556
Score = 39.4 bits (92), Expect = 4e-05
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+A + + + LLN LG V + A+ + AL++
Sbjct: 457 ILLANEYLQSSYA---------LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Score = 36.0 bits (83), Expect = 6e-04
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
LG + +L A E+ + + + +
Sbjct: 444 YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481
Score = 32.9 bits (75), Expect = 0.007
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 20 ENCFMEALSKVKQLGGEIIADKWEP-LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78
N F + +L + K E + G V L ++ A E +K+AL+V
Sbjct: 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235
Query: 79 TFCCIV 84
F +V
Sbjct: 236 AFDQLV 241
Score = 32.1 bits (73), Expect = 0.013
Identities = 6/65 (9%), Positives = 14/65 (21%), Gaps = 9/65 (13%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78
+ L I + + + + + P KA
Sbjct: 324 VLAITTKILE---------IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374
Query: 79 TFCCI 83
T+ +
Sbjct: 375 TWLAV 379
Score = 31.7 bits (72), Expect = 0.018
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
Y A + + L ++ + + V K A+ ++L ++P
Sbjct: 532 YDAAIDALNQGLL---------LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581
Score = 31.0 bits (70), Expect = 0.035
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
+G + K EA + ++
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSS 400
Score = 30.2 bits (68), Expect = 0.055
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
H ++++A+ + A +
Sbjct: 411 IGFAHSFAIEGEHDQAISAYTTAARLFQ 438
Score = 28.7 bits (64), Expect = 0.20
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
LL ++ + L + L + P
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDP 336
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 50.0 bits (120), Expect = 3e-09
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 16 YTVAENCFMEALSKVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
+ A CF+E + L + + + V A + ++++LV A
Sbjct: 82 WDAARRCFLEERELLASLPEDPLAASA----NAYEVATVALHFGDLAGARQEYEKSLVYA 137
Score = 47.7 bits (114), Expect = 3e-08
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 16 YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
A + ++L +Q A LG + ++ K EA + +A
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACA------FRGLGDLAQQEKNLLEAQQHWLRAR 174
Score = 47.7 bits (114), Expect = 3e-08
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 16 YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
+ A F + ++ G E A L+ +G V R ++ A + +
Sbjct: 42 FDEARASFQALQQQAQKSGDHTAEHRA------LHQVGMVERMAGNWDAARRCFLEEREL 95
Query: 73 A 73
Sbjct: 96 L 96
Score = 45.0 bits (107), Expect = 3e-07
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 19 AENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
A + + L A LG+V + +++EA + A
Sbjct: 5 AHDYALAERQAQALLAHPATASGA------RFMLGYVYAFMDRFDEARASFQALQQQA 56
Score = 27.2 bits (61), Expect = 0.58
Identities = 5/45 (11%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKY 59
A+ ++ A +L + + L+ L + +
Sbjct: 163 LLEAQQHWLRARDIFAELEDSEAVNE----LMTRLNGLEHHHHHH 203
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 50.4 bits (121), Expect = 5e-09
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 4 DNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEA 62
D E + + A + + E LS V LG NLG+ + L + +A
Sbjct: 151 DVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR----AFGNLGNTHYLLGNFRDA 206
Query: 63 LEFHKQAL 70
+ H+Q L
Sbjct: 207 VIAHEQRL 214
Score = 48.1 bits (115), Expect = 3e-08
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGE-IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
+ A + + L +QL + A +LG+ L+ YE+A+++H + L +A
Sbjct: 243 FETASEYYKKTLLLARQLKDRAVEAQ----SCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297
Score = 46.9 bits (112), Expect = 7e-08
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A + ++ L+ ++L I +LG+ L +++A+ F ++ L
Sbjct: 283 YEKAIDYHLKHLAIAQELNDRIGEGR----ACWSLGNAYTALGNHDQAMHFAEKHL 334
Score = 46.9 bits (112), Expect = 7e-08
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A L+ + +G ++ A NLG+ + L ++EA+ ++ L
Sbjct: 63 YAKALEYHHHDLTLARTIGDQLGEAK----ASGNLGNTLKVLGNFDEAIVCCQRHL 114
Score = 46.1 bits (110), Expect = 1e-07
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ A + L K+ G + +NLG+ L ++E A E++K+ L
Sbjct: 203 FRDAVIAHEQRLLIAKEFGDKAAERR----AYSNLGNAYIFLGEFETASEYYKKTL 254
Score = 41.9 bits (99), Expect = 4e-06
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
+ F A+ Q+G E + + + LG+ L Y +ALE+H L +A
Sbjct: 25 CRAGVSFFEAAV----QVGTEDLKTLSA-IYSQLGNAYFYLHDYAKALEYHHHDLTLA 77
Score = 38.4 bits (90), Expect = 9e-05
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVA 73
L G K + F + A+ V
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVG 39
Score = 33.4 bits (77), Expect = 0.004
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 25/76 (32%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKL------------------ 56
+ A C L ++L ++ A L NLG+V
Sbjct: 103 FDEAIVCCQRHLDISRELNDKVGEAR----ALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158
Query: 57 --KKYEEALEFHKQAL 70
+ A++F+++ L
Sbjct: 159 VRDALQAAVDFYEENL 174
Score = 29.6 bits (67), Expect = 0.090
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 12/63 (19%)
Query: 16 YTVAENCFMEALSKVKQLGGEI--------IADKWEPLLNNLGHVNRKLKKYEEALEFHK 67
+ A + + L +++G + ++D L LG
Sbjct: 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSD----LQMVLGLSYSTNNSIMSENTEID 378
Query: 68 QAL 70
+L
Sbjct: 379 SSL 381
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 50.0 bits (120), Expect = 5e-09
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEE 61
+ + D + T A + E L ++ LG NLG+ L ++
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR----ACGNLGNTYYLLGDFQA 241
Query: 62 ALEFHKQAL 70
A+E H++ L
Sbjct: 242 AIEHHQERL 250
Score = 49.6 bits (119), Expect = 9e-09
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A L+ K + + A NLG+ + + +++EA ++ L
Sbjct: 102 YNKAMQYHKHDLTLAKSMNDRLGEAK----SSGNLGNTLKVMGRFDEAAICCERHL 153
Score = 48.8 bits (117), Expect = 2e-08
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 16 YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
+ A L+ ++LG GE A +LG+ + + +E AL++ +Q L +
Sbjct: 319 FNTAIEYHNRHLAIAQELGDRIGEARA------CWSLGNAHSAIGGHERALKYAEQHLQL 372
Query: 73 A 73
A
Sbjct: 373 A 373
Score = 47.3 bits (113), Expect = 5e-08
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 16 YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
+ A + L+ +LG E + +LG+ L ++ A+E+H + L +
Sbjct: 279 FEDAAEHYKRTLALAVELGEREVEAQS------CYSLGNTYTLLHEFNTAIEYHNRHLAI 332
Query: 73 A 73
A
Sbjct: 333 A 333
Score = 46.9 bits (112), Expect = 6e-08
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 16 YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ A E L ++ G E A +NLG+ + L ++E+A E +K+ L
Sbjct: 239 FQAAIEHHQERLRIAREFGDRAAERRA------NSNLGNSHIFLGQFEDAAEHYKRTL 290
Score = 44.2 bits (105), Expect = 8e-07
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
F A+ + + A + + LG+ L Y +A+++HK L
Sbjct: 64 CRAGVAFFQAAIQAGTEDLRTLSA-----IYSQLGNAYFYLGDYNKAMQYHKHDL 113
Score = 40.4 bits (95), Expect = 2e-05
Identities = 6/56 (10%), Positives = 11/56 (19%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
N + G + L G + F + A+
Sbjct: 24 GGGGTNSHDGNSQQGSGSDGGSSMC----LELALEGERLCNAGDCRAGVAFFQAAI 75
Score = 38.8 bits (91), Expect = 6e-05
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 22/73 (30%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKY--------------- 59
+ A C L+ +QLG + L NLG+V K+
Sbjct: 142 FDEAAICCERHLTLARQLGDRLSEGR----ALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197
Query: 60 --EEALEFHKQAL 70
A+EF+++ L
Sbjct: 198 ALTRAVEFYQENL 210
Score = 26.1 bits (58), Expect = 1.7
Identities = 2/25 (8%), Positives = 4/25 (16%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
+ + L H
Sbjct: 11 ASAENVSSLGLGSGGGGTNSHDGNS 35
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 48.8 bits (117), Expect = 2e-08
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 3 LDNVELSSDKSFSYTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKY 59
D E D + A + + E LS V LG + A NLG+ + L +
Sbjct: 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA------FGNLGNTHYLLGNF 199
Query: 60 EEALEFHKQAL 70
+A+ H+Q L
Sbjct: 200 RDAVIAHEQRL 210
Score = 47.6 bits (114), Expect = 4e-08
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A + ++ L+ ++L I +LG+ L +++A+ F ++ L
Sbjct: 279 YEKAIDYHLKHLAIAQELKDRIGEGR----ACWSLGNAYTALGNHDQAMHFAEKHL 330
Score = 46.5 bits (111), Expect = 1e-07
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGE-IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
+ A + + L +QL + A +LG+ L+ YE+A+++H + L +A
Sbjct: 239 FETASEYYKKTLLLARQLKDRAVEAQ----SCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293
Score = 46.1 bits (110), Expect = 1e-07
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A L+ + +G ++ A NLG+ + L ++EA+ ++ L
Sbjct: 59 YAKALEYHHHDLTLARTIGDQLGEAK----ASGNLGNTLKVLGNFDEAIVCCQRHL 110
Score = 44.2 bits (105), Expect = 7e-07
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 16 YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ A + L K+ G E A +NLG+ L ++E A E++K+ L
Sbjct: 199 FRDAVIAHEQRLLIAKEFGDKAAERRA------YSNLGNAYIFLGEFETASEYYKKTL 250
Score = 42.6 bits (101), Expect = 3e-06
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ F A+ Q+G E + + + LG+ L Y +ALE+H L
Sbjct: 21 CRAGVSFFEAAV----QVGTEDLKTLSA-IYSQLGNAYFYLHDYAKALEYHHHDL 70
Score = 38.8 bits (91), Expect = 5e-05
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVA 73
L G K + F + A+ V
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVG 35
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 25/76 (32%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKL------------------ 56
+ A C L ++L ++ A L NLG+V
Sbjct: 99 FDEAIVCCQRHLDISRELNDKVGEAR----ALYNLGNVYHAKGKSFGCPGPQDTGEFPED 154
Query: 57 --KKYEEALEFHKQAL 70
+ A++ +++ L
Sbjct: 155 VRNALQAAVDLYEENL 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 46.8 bits (112), Expect = 4e-08
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 16 YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
+ A + L K+ G E IA +NLG+ L ++E A E++K+ L++
Sbjct: 25 FRDAVIAHEQRLLIAKEFGDKAAERIA------YSNLGNAYIFLGEFETASEYYKKTLLL 78
Query: 73 A 73
A
Sbjct: 79 A 79
Score = 46.4 bits (111), Expect = 6e-08
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A + ++ L+ ++L I +LG+ L +++A+ F ++ L
Sbjct: 105 YEKAIDYHLKHLAIAQELKDRIGEGR----ACWSLGNAYTALGNHDQAMHFAEKHL 156
Score = 46.0 bits (110), Expect = 8e-08
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ A + + L +QL A +LG+ L+ YE+A+++H + L
Sbjct: 65 FETASEYYKKTLLLARQLKDRAVEAQ----SCYSLGNTYTLLQDYEKAIDYHLKHL 116
Score = 42.1 bits (100), Expect = 2e-06
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVA 73
NLG+ + L + +A+ H+Q L++A
Sbjct: 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIA 39
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 46.0 bits (109), Expect = 2e-07
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+A F +A ++ +++ +L L K + ++A +F ++ L
Sbjct: 238 DQMAVEHFQKAAKVSREKVPDLLPK----VLFGLSWTLCKAGQTQKAFQFIEEGL 288
Score = 43.3 bits (102), Expect = 1e-06
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A + EA ++ + +I A+ + +K+ ++ QAL
Sbjct: 117 YVEAIGYYREAEKELPFVSDDIEKAE----FHFKVAEAYYHMKQTHVSMYHILQAL 168
Score = 43.3 bits (102), Expect = 1e-06
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGE-IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A AL + + IA L N+ + + + A+E ++A
Sbjct: 198 YDKALPHLEAALELAMDIQNDRFIAI----SLLNIANSYDRSGDDQMAVEHFQKAA 249
Score = 37.9 bits (88), Expect = 1e-04
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 6/57 (10%)
Query: 16 YTVAENCFMEALSKVKQLGGEI--IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
V+ ++AL + L + K Y++AL + AL
Sbjct: 157 THVSMYHILQALDIYQNHPLYSIRTIQ----SLFVIAGNYDDFKHYDKALPHLEAAL 209
Score = 37.5 bits (87), Expect = 2e-04
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 14 FSYTVAENCFMEALSKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ TV E + LS ++ I + V +E+A F+++ L
Sbjct: 310 YKETVDERKIHDLLSYFEKKNLHAYIEA----CARSAAAVFESSCHFEQAAAFYRKVL 363
Score = 30.9 bits (70), Expect = 0.031
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 68
A E L + + + + L + +K + L + ++
Sbjct: 277 TQKAFQFIEEGLDHITARSHKFYKELFL-FLQAVYKETVDERKIHDLLSYFEK 328
Score = 30.9 bits (70), Expect = 0.033
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
L G K+Y EA+ ++++A
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAE 128
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 44.0 bits (104), Expect = 8e-07
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGE-IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
Y A + F +A S + ++ L N+G +YE+A+ + K+A+ V
Sbjct: 200 YEDAISHFQKAYSMAEAEKQPQLMGR----TLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254
Score = 42.9 bits (101), Expect = 2e-06
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A F +A SK+ + I A+ + +K+ ++++ +QA
Sbjct: 119 YLSAIKFFKKAESKLIFVKDRIEKAE----FFFKMSESYYYMKQTYFSMDYARQAY 170
Score = 42.9 bits (101), Expect = 2e-06
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 16 YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
Y A F A++ ++ A + ++ KL K ++A E+H + +
Sbjct: 240 YEDAIPYFKRAIAVFEESNILPSLPQA------YFLITQIHYKLGKIDKAHEYHSKGMAY 293
Query: 73 A 73
+
Sbjct: 294 S 294
Score = 41.0 bits (96), Expect = 1e-05
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 16 YTVAENCFMEALSKVKQLGGEI--IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
+ + +A K+ + + LK+YE+A+ ++A +A
Sbjct: 159 TYFSMDYARQAYEIYKEHEAYNIRLLQ----CHSLFATNFLDLKQYEDAISHFQKAYSMA 214
Score = 35.6 bits (82), Expect = 7e-04
Identities = 2/26 (7%), Positives = 10/26 (38%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQAL 70
++ + K +++A + +
Sbjct: 341 FAIDVAKYYHERKNFQKASAYFLKVE 366
Score = 29.8 bits (67), Expect = 0.084
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
G ++Y A++F K+A
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAE 130
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 41.4 bits (98), Expect = 7e-06
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 16 YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y VA +AL K G + +A +LN L V R KY++A AL
Sbjct: 43 YEVAVPLCKQALEDLEKTSGHDHPDVAT----MLNILALVYRDQNKYKDAANLLNDAL 96
Score = 39.8 bits (94), Expect = 2e-05
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 16 YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A N +AL+ + K LG + +A LNNL + K KY+EA K+AL
Sbjct: 85 YKDAANLLNDALAIREKTLGKDHPAVAA----TLNNLAVLYGKRGKYKEAEPLCKRAL 138
Score = 39.4 bits (93), Expect = 3e-05
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 16 YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y AE AL + K LG + +A LNNL + + KYEE ++++AL
Sbjct: 127 YKEAEPLCKRALEIREKVLGKDHPDVAK----QLNNLALLCQNQGKYEEVEYYYQRAL 180
Score = 39.1 bits (92), Expect = 5e-05
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 16 YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71
Y E + AL +LG + +A NNL K K+++A +K+ L
Sbjct: 169 YEEVEYYYQRALEIYQTKLGPDDPNVAK----TKNNLASCYLKQGKFKQAETLYKEILT 223
Score = 37.9 bits (89), Expect = 1e-04
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 16 YTVAENCFMEALSKV--KQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ AE + E L++ ++ G P+ + K ++ F +
Sbjct: 211 FKQAETLYKEILTRAHEREFGSVDDENK----PIWMHAEEREECKGKQKDGTSFGEYGG 265
Score = 37.1 bits (87), Expect = 2e-04
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
L NLG + R+ K+E A + A+
Sbjct: 281 LKNLGALYRRQGKFEAAETLEEAAM 305
Score = 36.7 bits (86), Expect = 3e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
L+NL +YE A+ KQAL
Sbjct: 30 LHNLVIQYASQGRYEVAVPLCKQAL 54
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 40.2 bits (95), Expect = 1e-05
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 16 YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A + +AL+ + K LG + +A LNNL + K KY+EA K+AL
Sbjct: 59 YKEAAHLLNDALAIREKTLGKDHPAVAA----TLNNLAVLYGKRGKYKEAEPLCKRAL 112
Score = 39.8 bits (94), Expect = 2e-05
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 16 YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
A +AL K G + +A +LN L V R KY+EA AL
Sbjct: 17 RGSAVPLCKQALEDLEKTSGHDHPDVAT----MLNILALVYRDQNKYKEAAHLLNDAL 70
Score = 39.8 bits (94), Expect = 2e-05
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 16 YTVAENCFMEALSKVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ K + + L +LG + R+ K E A A
Sbjct: 228 RRDSAPYGEYGSWY-KACKVDSPTVNT----TLRSLGALYRRQGKLEAAHTLEDCAS 279
Score = 38.7 bits (91), Expect = 6e-05
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 16 YTVAENCFMEALSKVKQ-LGGEI---IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y AE + E L++ + G + P+ + K ++ + +
Sbjct: 185 YQDAETLYKEILTRAHEKEFGSVNGDNK----PIWMHAEEREESKDKRRDSAPYGEYGS 239
Score = 38.3 bits (90), Expect = 7e-05
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 16 YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y AE AL + K LG +A LNNL + + K EE ++++AL
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHPDVAK----QLNNLALLCQNQGKAEEVEYYYRRAL 154
Score = 37.9 bits (89), Expect = 1e-04
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 16 YTVAENCFMEALS-KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
E + AL +LG + +A NNL K KY++A +K+ L
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAK----TKNNLASCYLKQGKYQDAETLYKEIL 196
Score = 32.9 bits (76), Expect = 0.005
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
++ H + L A+ KQAL
Sbjct: 4 SHHHHHHSSGLVPRGSAVPLCKQAL 28
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 38.4 bits (90), Expect = 8e-05
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
YT A + + + + A+ + H K +K EA+ + L
Sbjct: 250 YTDATSKYESVMKTEPSV-----AEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299
Score = 31.1 bits (71), Expect = 0.029
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 19 AENCFMEAL------SKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
AE+ F + L + K+ +++ L + Y A+ F + L V
Sbjct: 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149
Query: 73 AP 74
Sbjct: 150 CV 151
Score = 29.9 bits (68), Expect = 0.062
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
L + + Y+EA++ ++ A
Sbjct: 309 LKDRAEAYLIEEMYDEAIQDYEAAQ 333
Score = 29.9 bits (68), Expect = 0.073
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
GH+ K K +EA + K+ L P
Sbjct: 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102
Score = 29.5 bits (67), Expect = 0.097
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + +L +E +L ++ L +
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQ 219
Score = 29.5 bits (67), Expect = 0.10
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
LG + +AL A+ P +
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY 41
Score = 29.5 bits (67), Expect = 0.11
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
V + K + AL + +
Sbjct: 40 YYRRATVFLAMGKSKAALPDLTKVI 64
Score = 28.8 bits (65), Expect = 0.18
Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 9/55 (16%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
YT A + L + L K + +A+ K A
Sbjct: 136 YTAAITFLDKILE---------VCVWDAELRELRAECFIKEGEPRKAISDLKAAS 181
Score = 25.3 bits (56), Expect = 3.2
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L + +Y +A ++ + P
Sbjct: 237 LIESAEELIRDGRYTDATSKYESVMKTEP 265
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 35.8 bits (83), Expect = 3e-04
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
LG R L +Y +A + P
Sbjct: 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFP 58
Score = 28.5 bits (64), Expect = 0.14
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L V L +YE+ +E + +
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 36.6 bits (85), Expect = 3e-04
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
YT A + + + + A+ + H K +K EA+ + L
Sbjct: 273 YTDATSKYESVMKTEPSI-----AEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322
Score = 32.0 bits (73), Expect = 0.015
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 19 AENCFMEAL------SKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
AE+ F + L ++ K+ ++I L + Y A+ F + L V
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172
Query: 73 AP 74
Sbjct: 173 CV 174
Score = 28.9 bits (65), Expect = 0.20
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
GH+ K K +EA + K+ L P
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Score = 28.9 bits (65), Expect = 0.20
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + +L +E +L ++ L +
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQ 242
Score = 28.5 bits (64), Expect = 0.26
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
V + K + AL + +
Sbjct: 63 YYRRATVFLAMGKSKAALPDLTKVI 87
Score = 28.1 bits (63), Expect = 0.32
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
LG + +AL A+ P +
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY 64
Score = 28.1 bits (63), Expect = 0.32
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
L + + Y+EA++ ++ A
Sbjct: 332 LKDRAEAYLIEEMYDEAIQDYETAQ 356
Score = 27.3 bits (61), Expect = 0.57
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 9/59 (15%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
YT A + L + L K + +A+ K A +
Sbjct: 159 YTAAIAFLDKILE---------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208
Score = 24.6 bits (54), Expect = 6.3
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L + +Y +A ++ + P
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMKTEP 288
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 36.4 bits (84), Expect = 4e-04
Identities = 6/55 (10%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ A + + +A + + A + + + + +K++EA ++
Sbjct: 131 LSKAVHLYQQAAAVFENEERLRQAAEL---IGKASRLLVRQQKFDEAAASLQKEK 182
Score = 33.7 bits (77), Expect = 0.004
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWE---PLLNNLGHVNRKLKKYEEALEFHKQAL 70
A +A +K ++ + K+ E+A + + Q
Sbjct: 10 AHEHIAKAEKYLK-TSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA 63
Score = 33.3 bits (76), Expect = 0.005
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
A++ +++ A K G + + L++ EA+++ ++A
Sbjct: 55 AKDAYLQEAEAHANNRSLFHAAK---AFEQAGMMLKDLQRMPEAVQYIEKAS 103
Score = 26.0 bits (57), Expect = 1.6
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ A + S K++ K V Y A + +++
Sbjct: 171 FDEAAASLQKEKSMYKEMENYPTCYK---KCIAQVLVQLHRADYVAAQKCVRESY 222
Score = 26.0 bits (57), Expect = 1.9
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
A +A + G A L+ G + + +A+ ++QA
Sbjct: 92 MPEAVQYIEKASVMYVENGTPDTAAM---ALDRAGKL-MEPLDLSKAVHLYQQAA 142
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 36.6 bits (85), Expect = 4e-04
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ ++EA Q G I D LG + ++ A++ AL V P
Sbjct: 196 VKELYLEAAH---QNGDMIDPDLQ----TGLGVLFHLSGEFNRAIDAFNAALTVRP 244
Score = 33.1 bits (76), Expect = 0.006
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
A + F AL + + + L N LG + EEA+E + +AL
Sbjct: 232 AIDAFNAAL--------TVRPEDYS-LWNRLGATLANGDRSEEAVEAYTRAL 274
Score = 31.6 bits (72), Expect = 0.020
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L L ++A E K + P
Sbjct: 136 LMALAVSYTNTSHQQDACEALKNWIKQNP 164
Score = 31.6 bits (72), Expect = 0.021
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
NLG L Y EA+ AL
Sbjct: 285 YNLGISCINLGAYREAVSNFLTAL 308
Score = 31.2 bits (71), Expect = 0.023
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
LG + + + A+ ++ L + P
Sbjct: 103 QFLGITQAENENEQAAIVALQRCLELQP 130
Score = 26.2 bits (58), Expect = 1.7
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
P G K + F + A++ P
Sbjct: 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP 96
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 35.4 bits (83), Expect = 4e-04
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
NLG+ K Y+EA+E++++AL + P
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDP 40
Score = 33.1 bits (77), Expect = 0.003
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
NLG+ K Y+EA+E++++AL
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 32.8 bits (76), Expect = 0.004
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
NLG+ K Y+EA+E++++AL + P
Sbjct: 47 YNLGNAYYKQGDYDEAIEYYQKALELDP 74
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 34.3 bits (80), Expect = 6e-04
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
NLG+ K Y+EA+E++++AL + P
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDP 40
Score = 32.8 bits (76), Expect = 0.003
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
NLG+ K Y+EA+E++++AL + P
Sbjct: 47 YNLGNAYYKQGDYDEAIEYYQKALELDP 74
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 35.1 bits (82), Expect = 7e-04
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
NLG+ K Y+EA+E++++AL
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKAL 28
Score = 34.3 bits (80), Expect = 0.001
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
NLG+ K Y+EA+E++++AL + P
Sbjct: 39 YNLGNAYYKQGDYDEAIEYYQKALELDP 66
Score = 33.5 bits (78), Expect = 0.002
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
NLG+ K Y+EA+E++++AL
Sbjct: 107 YNLGNAYYKQGDYDEAIEYYQKAL 130
Score = 33.5 bits (78), Expect = 0.002
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
NLG+ K Y+EA+E++++AL + P
Sbjct: 73 YNLGNAYYKQGDYDEAIEYYQKALELDP 100
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 35.2 bits (82), Expect = 9e-04
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
LNNL ++ R+ EEA+ +++AL V P
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFP 336
Score = 35.2 bits (82), Expect = 9e-04
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + A+ +NLG+V ++ + +EA+E ++ AL + P
Sbjct: 49 LDRSAHFSTLAIK---------QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
++LG++ + L + EEA + +A+ P A +
Sbjct: 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78
AE M+ +L L ++ + ++ + + F A+ P+ A
Sbjct: 18 AERHCMQLWR---------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE 68
Query: 79 TF 80
+
Sbjct: 69 AY 70
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A + +AL + ++ +NL V ++ K +EAL +K+A+ ++P
Sbjct: 324 AVRLYRKALE---------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Score = 34.4 bits (80), Expect = 0.002
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+NLG V + A+ ++A+ + P
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Score = 34.1 bits (79), Expect = 0.002
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
NL V + + A++ +++A+ + P
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Score = 34.1 bits (79), Expect = 0.002
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
NL + ++ EA + + AL + P
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCP 302
Score = 34.1 bits (79), Expect = 0.003
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A + F +A++ + + NLG+V ++ + ++ A+ + +AL ++P
Sbjct: 188 AIHHFEKAVT---------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Score = 33.3 bits (77), Expect = 0.005
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
NL E A++ + AL P
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYNP 132
Score = 29.0 bits (66), Expect = 0.14
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L H + +E A Q P
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEP 30
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 35.5 bits (82), Expect = 9e-04
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A +A + + E L + +++K +EA+E + + ++A
Sbjct: 447 AIKLLTKACE---------LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493
Score = 33.5 bits (77), Expect = 0.004
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ G + L+ Y+ A E ++A + P
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Score = 32.8 bits (75), Expect = 0.007
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQAL 70
+N+ E+ +EF +AL
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKAL 86
Score = 32.4 bits (74), Expect = 0.010
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ E + + L N G+ K + EA+++++ A+ + P
Sbjct: 3 HMNGEPDIAQLKGLSPSQ-----RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP 56
Score = 32.0 bits (73), Expect = 0.014
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
L + +E +F ++A+
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAV 303
Score = 32.0 bits (73), Expect = 0.016
Identities = 2/25 (8%), Positives = 8/25 (32%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
+ ++ A++ + A
Sbjct: 381 PTFFAEILTDRGDFDTAIKQYDIAK 405
Score = 30.8 bits (70), Expect = 0.037
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
L + K K+ E+ F +
Sbjct: 348 IQLACLLYKQGKFTESEAFFNETK 371
Score = 30.1 bits (68), Expect = 0.061
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
L G + +A ++++
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESI 270
Score = 29.7 bits (67), Expect = 0.11
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQA 69
L N L + +A+
Sbjct: 96 LLRRASANESLGNFTDAMFDLSVL 119
Score = 26.2 bits (58), Expect = 1.5
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 33 LGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+G I ++ +K+ A++ +A
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455
Score = 24.3 bits (53), Expect = 7.7
Identities = 6/59 (10%), Positives = 16/59 (27%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
+ + A + + + + E L + + Y L + + A
Sbjct: 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB:
3pe3_A* 3pe4_A*
Length = 723
Score = 35.2 bits (80), Expect = 0.001
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
LNNL ++ R+ EEA+ +++AL V P A+
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 47
Score = 35.2 bits (80), Expect = 0.001
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A C+ A+ I + +NL +++ EA+ ++ AL + P
Sbjct: 93 VQGALQCYTRAIQ---------INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142
Score = 34.8 bits (79), Expect = 0.002
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78
A + +AL + ++ +NL V ++ K +EAL +K+A+ ++P A
Sbjct: 28 AVRLYRKALE---------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78
Query: 79 TFC 81
+
Sbjct: 79 AYS 81
Score = 33.2 bits (75), Expect = 0.005
Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A + EA+ I+ + +N+G+ ++++ + AL+ + +A+ + P
Sbjct: 62 ALMHYKEAIR---------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 35.2 bits (81), Expect = 0.001
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
+ LGH + E A + +A + P +
Sbjct: 93 IALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129
Score = 32.9 bits (75), Expect = 0.007
Identities = 4/56 (7%), Positives = 10/56 (17%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A+ + L + ++ L + P
Sbjct: 8 ELLQLRAAVR---------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP 54
Score = 30.2 bits (68), Expect = 0.061
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
E L+ + + LG V +++ EA +QA AP
Sbjct: 42 GEMAVQRGLA---------LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR
PROT protein-protein interactions, protein binding;
2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A
3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 34.7 bits (81), Expect = 0.001
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+LG K + E +++L AP
Sbjct: 46 LHLGIAYVKTGAVDRGTELLERSLADAP 73
Score = 33.6 bits (78), Expect = 0.003
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
LG L +++EA++ K AL + P
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRP 141
Score = 33.6 bits (78), Expect = 0.003
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ G + K +Y +A+ +Q
Sbjct: 12 RDKGISHAKAGRYSQAVMLLEQVYDADA 39
Score = 33.2 bits (77), Expect = 0.004
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
+ ++ ++EEAL K+A
Sbjct: 148 RAIAFSYEQMGRHEEALPHFKKAN 171
Score = 33.2 bits (77), Expect = 0.004
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
LG +++KY+ A+ + P
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLIKVAEANP 107
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis}
SCOP: k.38.1.1
Length = 243
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
Y A F +A+ + N ++ + + E AL F+ +AL
Sbjct: 39 YEKAAEAFTKAIE---------ENKEDAIPYINFANLLSSVNELERALAFYDKAL 84
Score = 33.3 bits (77), Expect = 0.004
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
LG V KL++ + AL + ++A+ +
Sbjct: 129 YMLGTVLVKLEQPKLALPYLQRAVELNE 156
Score = 33.3 bits (77), Expect = 0.005
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
G+V + Y+EA + ++AL
Sbjct: 95 YGAGNVYVVKEMYKEAKDMFEKAL 118
Score = 32.9 bits (76), Expect = 0.006
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
N G + E+ALE +A+
Sbjct: 197 YNAGVTYAYKENREKALEMLDKAI 220
Score = 32.5 bits (75), Expect = 0.009
Identities = 5/28 (17%), Positives = 6/28 (21%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
G +EAL P
Sbjct: 163 FQFGMCLANEGMLDEALSQFAAVTEQDP 190
Score = 31.7 bits (73), Expect = 0.018
Identities = 6/56 (10%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + V + + + YE+A E +A+
Sbjct: 4 SHHHHHHSSGLVPRG-----SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK 54
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 34.6 bits (80), Expect = 0.002
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ F+ A+ + I D LG + +Y++A++ AL V P
Sbjct: 200 VKELFLAAV---RLDPTSIDPDVQ----CGLGVLFNLSGEYDKAVDCFTAALSVRP 248
Score = 33.5 bits (77), Expect = 0.005
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A +CF AL + + + L N LG + EEA+ +++AL + P
Sbjct: 236 AVDCFTAAL--------SVRPNDYL-LWNKLGATLANGNQSEEAVAAYRRALELQP 282
Score = 31.9 bits (73), Expect = 0.014
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
NLG L + EA+E +AL +
Sbjct: 289 YNLGISCINLGAHREAVEHFLEALNMQR 316
Score = 30.8 bits (70), Expect = 0.036
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L L +A E + L P
Sbjct: 135 LMALAVSFTNESLQRQACEILRDWLRYTP 163
Score = 30.4 bits (69), Expect = 0.044
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
LG + ++ A+ ++ L + P
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKP 129
Score = 28.5 bits (64), Expect = 0.25
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 10/58 (17%)
Query: 19 AENCFMEALS------KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
A F+EAL+ + GG + + W + L L + + + L
Sbjct: 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIW----STLRLALSMLGQSDAYGAADARDL 357
Score = 25.4 bits (56), Expect = 2.6
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
P G + A+ + A+ P
Sbjct: 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP 95
Score = 24.2 bits (53), Expect = 6.9
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 8/63 (12%)
Query: 19 AENCFMEALSK-------VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 71
A + L V P LG + + E E A+
Sbjct: 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVR 209
Query: 72 VAP 74
+ P
Sbjct: 210 LDP 212
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility
protein; secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 34.5 bits (80), Expect = 0.002
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
Y A +AL K E + + LK ++A E +QAL + P
Sbjct: 24 YRQATASIEDALK---------SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73
Score = 33.8 bits (78), Expect = 0.003
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ F +AL+ + N G + K ++ A + K++L P
Sbjct: 96 SMAYFDKALAD------PTYPTPYIAN-LNKGICSAKQGQFGLAEAYLKRSLAAQP 144
Score = 32.6 bits (75), Expect = 0.007
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
AE +L+ ++ P L + +A + K+
Sbjct: 132 AEAYLKRSLA---------AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Score = 30.3 bits (69), Expect = 0.054
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
L + + Y +A + AL P
Sbjct: 12 TQLAMEYMRGQDYRQATASIEDALKSDP 39
Score = 29.5 bits (67), Expect = 0.10
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHV-NRKLKKYEEALEFHKQAL 70
A+ F +ALS I + NN G +L + E++ + +AL
Sbjct: 61 AQESFRQALS---------IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding;
2.50A {Thermus thermophilus}
Length = 217
Score = 34.4 bits (80), Expect = 0.002
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
L KL ALE K + P
Sbjct: 43 YWLARTQLKLGLVNPALENGKTLVARTP 70
Score = 33.7 bits (78), Expect = 0.003
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
G V L + ++A KQAL
Sbjct: 122 LQRGLVYALLGERDKAEASLKQAL 145
Score = 33.7 bits (78), Expect = 0.003
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ L + + + +EAL + +AL AP
Sbjct: 155 SALAELYLSMGRLDEALAQYAKALEQAP 182
Score = 32.9 bits (76), Expect = 0.006
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
LG L +Y+ AL ++AL P
Sbjct: 9 LRLGVQLYALGRYDAALTLFERALKENP 36
Score = 27.5 bits (62), Expect = 0.54
Identities = 4/24 (16%), Positives = 4/24 (16%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
K EEA
Sbjct: 189 VRYASALLLKGKAEEAARAAALEH 212
Score = 26.3 bits (59), Expect = 1.1
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L R E+AL K A V P
Sbjct: 86 LYRQAEDRERGKGYLEQALSVLKDAERVNP 115
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics,
unknown function, PSI-2, protein structure initiative;
NMR {Methanococcus maripaludis}
Length = 112
Score = 33.2 bits (77), Expect = 0.003
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
G L++YEEA++ + + V
Sbjct: 44 LMKGKALYNLERYEEAVDCYNYVINVIE 71
Score = 32.4 bits (75), Expect = 0.004
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
R ++ E E + +
Sbjct: 80 AAKADALRYIEGKEVEAEIAEARAKLEH 107
Score = 32.4 bits (75), Expect = 0.006
Identities = 4/32 (12%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 39 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+++ G + Y E+++ ++A+
Sbjct: 6 PEEY----YLEGVLQYDAGNYTESIDLFEKAI 33
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 33.0 bits (76), Expect = 0.003
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L + K AL ++ + P
Sbjct: 9 TRYALAQEHLKHDNASRALALFEELVETDP 38
Score = 32.6 bits (75), Expect = 0.004
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+LG + +L + ++A++ + Q + VA
Sbjct: 45 YHLGKLYERLDRTDDAIDTYAQGIEVAR 72
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 33.8 bits (78), Expect = 0.003
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
A+ + +AL+ + +LNN G + K+YEEA + +A
Sbjct: 90 ADEEYRKALA---------SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132
Score = 33.4 bits (77), Expect = 0.004
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
A+ F ++L + + + + K ++Y A +++ A
Sbjct: 160 AKEYFEKSLR---------LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209
Score = 32.2 bits (74), Expect = 0.010
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A+ +AL I L V + + + A E +++AL
Sbjct: 53 TEQAKVPLRKALE---------IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102
Score = 31.9 bits (73), Expect = 0.016
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A +EA + ++ NLG V+ ++KK +A E+ +++L +
Sbjct: 124 AYQRLLEASQDT------LYPERSRVF-ENLGLVSLQMKKPAQAKEYFEKSLRLNR 172
Score = 31.1 bits (71), Expect = 0.025
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
LG + E+A ++AL + P
Sbjct: 41 IQLGLGYLQRGNTEQAKVPLRKALEIDP 68
Score = 26.1 bits (58), Expect = 1.4
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
L + + + + A + Q
Sbjct: 212 LLLGIRLAKVFEDRDTAASYGLQLK 236
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 33.8 bits (77), Expect = 0.003
Identities = 11/56 (19%), Positives = 15/56 (26%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
AE +A+ + + N LG V K A AL
Sbjct: 122 AEVLLSKAVK---------LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK 168
Score = 32.3 bits (73), Expect = 0.013
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
N +++ + Y EALE QA + P
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQ 296
Score = 27.7 bits (61), Expect = 0.51
Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 9/54 (16%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA 69
Y A F +A + + W + L + LE +
Sbjct: 274 YGEALEGFSQAAA---------LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
Score = 26.9 bits (59), Expect = 0.87
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 19/68 (27%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKL---------KKYEEALEFHKQA 69
A CF AL+ K + L NL V R+L + +++ K A
Sbjct: 156 AHTCFSGALTH----------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205
Query: 70 LVVAPMKA 77
+ + +
Sbjct: 206 VQMDVLDG 213
Score = 26.9 bits (59), Expect = 0.88
Identities = 13/86 (15%), Positives = 20/86 (23%), Gaps = 14/86 (16%)
Query: 3 LDNVELSSDKSFS----YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 58
+VE + K E L A L G
Sbjct: 67 THSVEDAGRKQQDVQEEMEKTLQQMEEVLG---------SAQVEAQALMLKGKALNVTPD 117
Query: 59 Y-EEALEFHKQALVVAPMKASTFCCI 83
Y EA +A+ + P + +
Sbjct: 118 YSPEAEVLLSKAVKLEPELVEAWNQL 143
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 33.8 bits (78), Expect = 0.003
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
G + K + A++ ++ A+
Sbjct: 78 EYYGKILMKKGQDSLAIQQYQAAV 101
Score = 33.4 bits (77), Expect = 0.004
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+A+ + + + G + + E + + + +A K L + P
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEAN-EYIAYYYTINRDKVKADAAWKNILALDP 252
Score = 32.6 bits (75), Expect = 0.008
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
LG K+Y +A + L + P
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELKP 173
Score = 31.1 bits (71), Expect = 0.028
Identities = 2/24 (8%), Positives = 10/24 (41%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
+G + A+++ ++ +
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQI 135
Score = 29.9 bits (68), Expect = 0.067
Identities = 5/29 (17%), Positives = 7/29 (24%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
K Y EA+E +
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY 34
Score = 28.0 bits (63), Expect = 0.28
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 45 LLNNLGHVNRKLKKYEEALEF 65
+ N +L KY+ A +
Sbjct: 39 IYNRRAVCYYELAKYDLAQKD 59
Score = 26.1 bits (58), Expect = 1.4
Identities = 4/37 (10%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 47 NNLGHVNRKLK---KYEEALEFHKQALVVAPMKASTF 80
N K A ++++ + V + +
Sbjct: 180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 33.8 bits (78), Expect = 0.004
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
A A+ E+ D + L N LG + +EAL+ + +AL
Sbjct: 191 AAANLRRAV--------ELRPDDAQ-LWNKLGATLANGNRPQEALDAYNRAL 233
Score = 32.6 bits (75), Expect = 0.007
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 19 AENCFMEALS------KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
A L ++ + + D + + + +Y E AL +
Sbjct: 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167
Query: 73 AP 74
P
Sbjct: 168 NP 169
Score = 31.5 bits (72), Expect = 0.018
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
N+ + +Y+ A + +A+ +
Sbjct: 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQV 271
Score = 31.5 bits (72), Expect = 0.023
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+LG + Y+ A ++A+ + P
Sbjct: 176 ASLGVLYNLSNNYDSAAANLRRAVELRP 203
Score = 31.1 bits (71), Expect = 0.027
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L + AL + L+ P
Sbjct: 92 HAALAVSHTNEHNANAALASLRAWLLSQP 120
Score = 30.7 bits (70), Expect = 0.037
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
+LG + +K A+ A
Sbjct: 59 RSLGLTQAENEKDGLAIIALNHAR 82
Score = 27.3 bits (61), Expect = 0.54
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
G KL EA +
Sbjct: 25 MEEGLSMLKLANLAEAALAFEAVC 48
Score = 24.6 bits (54), Expect = 4.8
Identities = 5/55 (9%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 19 AENCFMEALS---KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
A + A+ GE + + + + + + + + Q +
Sbjct: 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 33.4 bits (76), Expect = 0.005
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
E EAL E + +L + R+ + ++A+E K+AL P
Sbjct: 232 GEKLVEEAL--------EKAPGVTD-VLRSAAKFYRRKDEPDKAIELLKKALEYIP 278
Score = 31.4 bits (71), Expect = 0.019
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
L+ L + +K ++A E ++ L
Sbjct: 433 LHVLAFLQELNEKMQQADEDSERGL 457
Score = 30.7 bits (69), Expect = 0.039
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
+ L ++ +YEEA + ++
Sbjct: 337 CSILASLHALADQYEEAEYYFQKEF 361
Score = 29.5 bits (66), Expect = 0.13
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQAL 70
+ N L ++ + E ALE ++A
Sbjct: 53 MCNLLAYLKHLKGQNEAALECLRKAE 78
Score = 28.4 bits (63), Expect = 0.28
Identities = 8/62 (12%), Positives = 20/62 (32%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78
A C +A ++Q + + N V + + + + + V +S
Sbjct: 70 ALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129
Query: 79 TF 80
+
Sbjct: 130 PY 131
Score = 28.0 bits (62), Expect = 0.38
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNR-KLKKYEEALEFHKQALVVAP 74
AE F + SK E+ + L G+ ++K ++A+ + + +
Sbjct: 353 AEYYFQKEFSK------ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403
Score = 24.9 bits (54), Expect = 4.9
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 12/62 (19%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVV 72
A+ CF +AL E E + L + +L + A++ +QA+ +
Sbjct: 154 NERAKVCFEKAL--------EKKPKNPE-FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204
Query: 73 AP 74
P
Sbjct: 205 NP 206
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 32.9 bits (76), Expect = 0.006
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
LNN + +YE A+ A+
Sbjct: 41 LNNRAAAEYEKGEYETAISTLNDAVEQGR 69
Score = 32.5 bits (75), Expect = 0.008
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 39 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
ADK G+ K ++++EA+E + +A
Sbjct: 5 ADKE----KAEGNKFYKARQFDEAIEHYNKAW 32
Score = 31.4 bits (72), Expect = 0.023
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
+ + KL+ E+ L+ + V P KA
Sbjct: 109 HRTADILTKLRNAEKELKKAEAEAYVNPEKA 139
Score = 30.6 bits (70), Expect = 0.034
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+K+Y ALE A
Sbjct: 211 IRKATAQIAVKEYASALETLDAARTKDA 238
Score = 30.6 bits (70), Expect = 0.043
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
+N KL + EA+ +A+
Sbjct: 177 SNRAAALAKLMSFPEAIADCNKAI 200
Score = 30.6 bits (70), Expect = 0.046
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
G + A++ + + + AP
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAP 170
Score = 27.1 bits (61), Expect = 0.74
Identities = 2/24 (8%), Positives = 7/24 (29%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
+ ++ L K+ +
Sbjct: 76 KVISKSFARIGNAYHKLGDLKKTI 99
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 32.8 bits (75), Expect = 0.006
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L+ + L QA + P
Sbjct: 347 IASHDGGKQALETVQRLLPVLCQAHGLTP 375
Score = 32.8 bits (75), Expect = 0.008
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
+ + + L+ + L QA + P +
Sbjct: 279 IASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 314
Score = 32.4 bits (74), Expect = 0.011
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
+ + + L+ + L QA + P +
Sbjct: 75 IASHDGGKQALETVQRLLPVLCQAHGLTPQQV 106
Score = 31.6 bits (72), Expect = 0.021
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
+ + G + L+ + L QA + P +
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQV 208
Score = 31.3 bits (71), Expect = 0.025
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + G + L+ + L QA + P
Sbjct: 381 IASNGGGKQALETVQRLLPVLCQAHGLTP 409
Score = 31.3 bits (71), Expect = 0.026
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + G + L+ + L QA + P
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQAHGLTP 239
Score = 31.3 bits (71), Expect = 0.028
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
+ + + L+ + L QA + P +
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTPEQV 140
Score = 30.9 bits (70), Expect = 0.032
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + G + L+ + L QA + P
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAHGLTP 273
Score = 30.9 bits (70), Expect = 0.033
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + G + L+ + L QA + P
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTP 341
Score = 30.5 bits (69), Expect = 0.045
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L+ + L QA + P
Sbjct: 415 IASHDGGKQALETVQRLLPVLCQAHGLTP 443
Score = 30.1 bits (68), Expect = 0.067
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L+ + L QA + P
Sbjct: 143 IASHDGGKQALETVQALLPVLCQAHGLTP 171
Score = 29.3 bits (66), Expect = 0.13
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + G L+ L AL
Sbjct: 449 IASNGGGRPALESIVAQLSRPDPALAALT 477
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 32.7 bits (75), Expect = 0.008
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
N LG + ++ A E L + P
Sbjct: 81 NYLGIYLTQAGNFDAAYEAFDSVLELDP 108
Score = 32.3 bits (74), Expect = 0.012
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
LG L + A K A+
Sbjct: 219 FYLGKYYLSLGDLDSATALFKLAV 242
Score = 31.1 bits (71), Expect = 0.028
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
LL G + L A QAL + P
Sbjct: 45 LLYERGVLYDSLGLRALARNDFSQALAIRP 74
Score = 30.7 bits (70), Expect = 0.037
Identities = 4/28 (14%), Positives = 7/28 (25%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
N G + + A + P
Sbjct: 115 LNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Score = 27.3 bits (61), Expect = 0.66
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A+ + K + W + LG+++ + E +A
Sbjct: 163 AKEVLKQHFEKSDK-----EQWGWNIVEFYLGNISEQ-TLMERLKADATDNTSLAE 212
Score = 25.0 bits (55), Expect = 4.0
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQ 68
L + ++ L Q
Sbjct: 253 RYALLELSLLGQDQDDLAESDQ 274
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 32.0 bits (73), Expect = 0.013
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
G +YE+A ++ ++ P
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFP 188
Score = 31.6 bits (72), Expect = 0.017
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L L +K + Y++A F+K+ L AP
Sbjct: 56 LATELALAYKKNRNYDKAYLFYKELLQKAP 85
Score = 31.3 bits (71), Expect = 0.025
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
Y A + E L A L + + ++AL +++ L +
Sbjct: 70 YDKAYLFYKELLQ---------KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119
Score = 28.6 bits (64), Expect = 0.23
Identities = 2/35 (5%), Positives = 13/35 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80
+ + + +A+ + +Q + + + +
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY 41
Score = 25.9 bits (57), Expect = 1.7
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 46 LNNLGHV-NRKLKKYEEALEFHKQALVVAP 74
LG+ ++ ++ LE + L
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 31.5 bits (72), Expect = 0.013
Identities = 8/56 (14%), Positives = 12/56 (21%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A AL + LG + A + + L A
Sbjct: 38 ALPHLRAALD---------FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84
Score = 28.8 bits (65), Expect = 0.100
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L LG + ++++ AL + AL P
Sbjct: 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDP 50
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 31.4 bits (71), Expect = 0.015
Identities = 5/36 (13%), Positives = 13/36 (36%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
LG + + +Y+ A+ + V+ +
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93
Score = 26.4 bits (58), Expect = 1.2
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 23 FMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
+ L I+ L +L + YE+A + V+ + F
Sbjct: 3 LGSGGGTIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFL 59
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 32.0 bits (73), Expect = 0.015
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
L + + + +EA+ +++ +A
Sbjct: 453 IGLAQMKLQQEDIDEAITLFEESADLAR 480
Score = 31.3 bits (71), Expect = 0.022
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 5 NVELSSDKSFSYTVAENCFMEALSKVKQ-LGGEIIADKWEP----LLNNLGHVNRKLKKY 59
L SY A+ F +A ++ L +K + L + G
Sbjct: 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253
Query: 60 EEALEFHKQALVVAP 74
A E K+A+ + P
Sbjct: 254 LGAHEDIKKAIELFP 268
Score = 31.3 bits (71), Expect = 0.026
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQAL 70
+NL + ++ +E +AL
Sbjct: 41 FYSNLSACYVSVGDLKKVVEMSTKAL 66
Score = 30.9 bits (70), Expect = 0.031
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ G +N L+ Y++A + +A + P
Sbjct: 308 YHRGQMNFILQNYDQAGKDFDKAKELDP 335
Score = 30.5 bits (69), Expect = 0.042
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L + G+ + KKY++A++++ AL +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE 37
Score = 30.5 bits (69), Expect = 0.046
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
+ + E + +AL
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKAL 297
Score = 30.5 bits (69), Expect = 0.051
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
N + +++AL+ + A+ +
Sbjct: 376 NFFAEILTDKNDFDKALKQYDLAIELEN 403
Score = 30.5 bits (69), Expect = 0.055
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
L + + K+++ +A P
Sbjct: 342 IQLACLAYRENKFDDCETLFSEAKRKFP 369
Score = 27.8 bits (62), Expect = 0.40
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 41 KWEPLLNNLGHVNRKLKKYEEALE 64
+ +L N L K+ +A+
Sbjct: 71 DYSKVLLRRASANEGLGKFADAMF 94
Score = 25.1 bits (55), Expect = 4.4
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 18/61 (29%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRK---------LKKYEEALEFHKQA 69
A + A+ + +K + + + + K ++ + EA ++A
Sbjct: 391 ALKQYDLAIE---------LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441
Query: 70 L 70
Sbjct: 442 S 442
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 31.9 bits (72), Expect = 0.019
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
+ + G + L+ + L QA + P +
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQV 328
Score = 31.5 bits (71), Expect = 0.022
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L+ + L QA + P
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLPP 257
Score = 31.2 bits (70), Expect = 0.030
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + G + L+ + L QA +
Sbjct: 670 IASNGGGKQALETVQRLLPVLCQAHGLTQ 698
Score = 30.8 bits (69), Expect = 0.038
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L+ + L QA + P
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTP 359
Score = 30.4 bits (68), Expect = 0.050
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L+ + L QA + P
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTP 291
Score = 30.0 bits (67), Expect = 0.069
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L+ + L QA + P
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTP 223
Score = 30.0 bits (67), Expect = 0.074
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L+ + L QA + P
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAHGLTP 732
Score = 30.0 bits (67), Expect = 0.087
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + G + L+ + L QA +
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQ 596
Score = 29.6 bits (66), Expect = 0.10
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + G + L+ + L QA + P
Sbjct: 365 IASNGGGKQALETVQRLLPVLCQAHGLTP 393
Score = 29.2 bits (65), Expect = 0.17
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L+ + L Q + P
Sbjct: 432 IASHDGGKQALETVQRLLPVLCQTHGLTP 460
Score = 28.5 bits (63), Expect = 0.30
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L + L QA + P
Sbjct: 500 IASNIGGKQALATVQRLLPVLCQAHGLTP 528
Score = 28.1 bits (62), Expect = 0.34
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L+ + L QA + P
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTP 664
Score = 27.7 bits (61), Expect = 0.43
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + G + L+ + L QA + P
Sbjct: 534 IASNGGGKQALETVQRLLPVLCQAHGLTP 562
Score = 27.7 bits (61), Expect = 0.48
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + G + L+ + L QA + P
Sbjct: 738 IASNGGGKQALETVQRLLPVLCQAHGLTP 766
Score = 27.3 bits (60), Expect = 0.72
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + + L+ + L QA + P
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTP 630
Score = 26.9 bits (59), Expect = 1.1
Identities = 5/36 (13%), Positives = 13/36 (36%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
+ + + L+ ++ L QA + P +
Sbjct: 466 IASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIA 501
Score = 25.0 bits (54), Expect = 3.9
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
+ + G + L+ + L QA + P +
Sbjct: 399 IASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIA 433
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 31.6 bits (71), Expect = 0.021
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST 79
LLN + ++E A ++AL T
Sbjct: 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236
Score = 24.7 bits (53), Expect = 4.5
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 9/52 (17%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
AE EAL L NL +++ L K E + L
Sbjct: 219 AEGVLQEALD---------KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 31.1 bits (71), Expect = 0.021
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
++ G+ +K A+++ ++L
Sbjct: 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114
Score = 29.9 bits (68), Expect = 0.045
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
NN V + KK+ E ++F ++A+ V
Sbjct: 44 FYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Score = 29.2 bits (66), Expect = 0.093
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
+LG+ K K +E+A + +A+ + P + +
Sbjct: 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYN 46
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle,
phagocyte oxidase factor, SH3 domain, repeat, TPR
repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP:
a.118.8.1 PDB: 1wm5_A 1e96_B*
Length = 213
Score = 31.2 bits (71), Expect = 0.024
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
G + + +KY+ A++ K+AL
Sbjct: 75 FQRGMLYYQTEKYDLAIKDLKEAL 98
Score = 30.8 bits (70), Expect = 0.030
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 16 YTVAENCFMEALSKVK--------QLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 67
Y +A EAL +++ LG + E +L N+ + K +++++A E
Sbjct: 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE-VLYNIAFMYAKKEEWKKAEEQLA 145
Query: 68 QALVVAP 74
A +
Sbjct: 146 LATSMKS 152
Score = 29.7 bits (67), Expect = 0.081
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
N+G + LK EA + +++
Sbjct: 41 FNIGCMYTILKNMTEAEKAFTRSI 64
Score = 26.2 bits (58), Expect = 1.3
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQA 69
L N G + K ++ AL+
Sbjct: 9 LWNEGVLAADKKDWKGALDAFSAV 32
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial
toxin, type III secretion, protein binding; 1.85A
{Pseudomonas aeruginosa} PDB: 2xcc_A
Length = 142
Score = 30.5 bits (69), Expect = 0.036
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
LG + L YE+AL+ + ++
Sbjct: 55 FLGLGACRQSLGLYEQALQSYSYGALMDI 83
Score = 29.7 bits (67), Expect = 0.062
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + +L + A A +A
Sbjct: 89 PFHAAECHLQLGDLDGAESGFYSARALAA 117
Score = 27.4 bits (61), Expect = 0.43
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L LG + K+++A + + ++
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDH 49
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha,
GFT-structural genomics, PSI-2, protein structure
initiative; NMR {Bacteroides fragilis}
Length = 99
Score = 29.6 bits (67), Expect = 0.043
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+G+ RKL +++AL ++ A+ + P
Sbjct: 39 YLMGNAYRKLGDWQKALNNYQSAIELNP 66
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 30.3 bits (68), Expect = 0.050
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A +A + + E + E L+ + + +EA + + V
Sbjct: 109 LQTAWETQEKAFQLINEQHLEQLPM-HEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166
Score = 29.6 bits (66), Expect = 0.11
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
AE AL ++ + LG V + +L +Q +A
Sbjct: 33 AERLAKLALEELPPGWFYSRIV----ATSVLGEVLHCKGELTRSLALMQQTEQMA 83
Score = 28.0 bits (62), Expect = 0.35
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 73
+ AE E + L ++ L L + + + +A AL +A
Sbjct: 269 FEPAEIVLEELNENARSLRLMSDLNR---NLLLLNQLYWQAGRKSDAQRVLLDALKLA 323
Score = 25.7 bits (56), Expect = 2.4
Identities = 6/58 (10%), Positives = 15/58 (25%), Gaps = 9/58 (15%)
Query: 16 YTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
T + + +Q + + L + + A E ++A
Sbjct: 69 LTRSLALMQQTEQMARQHDVWHYALWS------LIQQSEILFAQGFLQTAWETQEKAF 120
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.057
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 54 RKLKKYEEALEFHKQALVVAP---MKAS 78
+ LKK + +L+ + A AP +KA+
Sbjct: 20 QALKKLQASLKLY--ADDSAPALAIKAT 45
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 29.6 bits (67), Expect = 0.065
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+G+ K +KY++A+ F+ ++L
Sbjct: 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
Score = 28.8 bits (65), Expect = 0.11
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ N V + Y + E ++A+ V
Sbjct: 40 YITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Score = 27.7 bits (62), Expect = 0.35
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
LG+ K K ++ AL+ + +A + P +
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIT 42
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 29.4 bits (66), Expect = 0.080
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + G +LK +A E + + +
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSN 135
Score = 29.0 bits (65), Expect = 0.13
Identities = 4/38 (10%), Positives = 11/38 (28%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
+ + + + EEA F + + +
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL 76
Score = 28.6 bits (64), Expect = 0.17
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ L + + +++++A + + A +
Sbjct: 73 IMGLAAIYQIKEQFQQAADLYAVAFALGK 101
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 29.6 bits (66), Expect = 0.089
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 12 KSFSYTVAENCFMEALSKVKQLGGEIIADKWE--------PLLNNLGHVNRKLKKYEEAL 63
K A + A++ + + K++ P N+ KLK+Y+EA+
Sbjct: 191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI 250
Query: 64 EFHKQAL 70
L
Sbjct: 251 GHCNIVL 257
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 29.5 bits (65), Expect = 0.10
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADK---WEPLLNNLGHVNRKLKKYEEALEFHKQALVV 72
+ A + +AL GE+ D+ W + + L + EA+ K+ + +
Sbjct: 73 FDEALHSADKAL-HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131
Query: 73 AP 74
Sbjct: 132 IE 133
Score = 26.0 bits (56), Expect = 1.6
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
L L+ ++EAL +AL +
Sbjct: 61 AGLAEALAGLRSFDEALHSADKALHYFNRRG 91
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 29.1 bits (66), Expect = 0.11
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+G L K+ EA+ ++K+AL + P
Sbjct: 84 GRMGLALSSLNKHVEAVAYYKKALELDP 111
Score = 27.2 bits (61), Expect = 0.52
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 81
L G+ K++ +E A+ F+ +A+ + P A FC
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFC 50
Score = 23.7 bits (52), Expect = 8.0
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 45 LLNNLGHVNRKLKKYEEALE 64
N KL Y A++
Sbjct: 48 YFCNRAAAYSKLGNYAGAVQ 67
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 29.1 bits (65), Expect = 0.17
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 12 KSFSYTVAENCFMEALSKVKQLGGEIIADKWE------PLLNNLGHVNRKLKKYEEALEF 65
K Y A + + +S ++ + + NL + KL+ + A+E
Sbjct: 159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218
Query: 66 HKQAL 70
+AL
Sbjct: 219 CNKAL 223
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 28.2 bits (63), Expect = 0.19
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L + AL + L+ P
Sbjct: 88 HAALAVSHTNEHNANAALASLRAWLLSQP 116
Score = 28.2 bits (63), Expect = 0.24
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+LG + +K A+ A ++ P
Sbjct: 55 RSLGLTQAENEKDGLAIIALNHARMLDP 82
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 28.2 bits (63), Expect = 0.27
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 7/62 (11%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWE-------PLLNNLGHVNRKLKKYEEALEFHKQ 68
A + EAL + NL K K Y +A++ +
Sbjct: 54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113
Query: 69 AL 70
L
Sbjct: 114 VL 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 28.2 bits (62), Expect = 0.28
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ F + L +++ L + + N +YEE+L +A+
Sbjct: 171 LKKGIDLFEQILKQLEALHDNE--EFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223
Score = 24.4 bits (52), Expect = 7.3
Identities = 3/26 (11%), Positives = 13/26 (50%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQAL 70
+ N + ++ + ++ ++ +Q L
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQIL 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics,
APC102156, PSI-biology, midwest center structural
genomics, MCSG; 2.41A {Caenorhabditis elegans}
Length = 162
Score = 28.1 bits (63), Expect = 0.28
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWE---------PLLNNLGHVNRKLKKYEEALEFH 66
Y A + + +AL+++ L + E PL N+ + EA E
Sbjct: 27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86
Query: 67 KQAL 70
+ L
Sbjct: 87 SEVL 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 28.1 bits (62), Expect = 0.32
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
Y A +C+ A Q +++K + +Y EA + + + + +
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNK---CFIKCADLKALDGQYIEASDIYSKLIKSSMG 190
Score = 25.4 bits (55), Expect = 3.0
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
A + F++A K+ G E A + A++ + A+
Sbjct: 56 AGDSFLKAADYQKKAGNEDEAGN---TYVEAYKCFKSGGNSVNAVDSLENAI 104
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 28.1 bits (62), Expect = 0.38
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 12 KSFSYTVAENCFMEALSKVKQLGG------EIIADKWEPLLNNLGHVNRKLKKYEEALEF 65
K Y A + + +S ++ G + NL KL++Y +A+E
Sbjct: 280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339
Query: 66 HKQAL 70
+AL
Sbjct: 340 CDKAL 344
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 27.4 bits (61), Expect = 0.48
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78
+ LG + Y+ A E +++ + S
Sbjct: 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 27.3 bits (60), Expect = 0.73
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQAL 70
+ V ++ K ++ L++ Q L
Sbjct: 204 QHRQWVIQEFKLWDNELQYVDQLL 227
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 26.6 bits (59), Expect = 0.95
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 44 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
+ N+G K+ ++ A++ +AL + P
Sbjct: 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT 307
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 26.4 bits (58), Expect = 1.1
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L L Y +A+E ++ + +
Sbjct: 118 LMLLASDAFMQANYAQAIELWQKVMDLNS 146
Score = 26.0 bits (57), Expect = 1.6
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 39 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+++W LG Y +L ++QAL +
Sbjct: 44 SEQW----ALLGEYYLWQNDYSNSLLAYRQALQLRG 75
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 26.4 bits (59), Expect = 1.4
Identities = 4/43 (9%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 33 LGGEIIADKW-EPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+G ++I ++ + + + E+ +++ + P
Sbjct: 436 VGVQVIGRRFADGKVFRIARA------IEKNSPYNENGMFPLP 472
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 26.5 bits (57), Expect = 1.4
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 80
L +LG + R + +A +++ A + P +
Sbjct: 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPY 189
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 26.0 bits (58), Expect = 1.5
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+K Y +A++ +++AL +
Sbjct: 87 YTRKAAALEAMKDYTKAMDVYQKALDLDS 115
Score = 24.9 bits (55), Expect = 3.5
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 55 KLKKYEEALEFHKQALVVAPMKASTFC 81
+ Y +A++ + +A+ P A +
Sbjct: 28 QKGDYPQAMKHYTEAIKRNPKDAKLYS 54
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 25.7 bits (57), Expect = 1.5
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+K+Y ALE A
Sbjct: 75 YIRKATAQIAVKEYASALETLDAARTKDA 103
Score = 24.2 bits (53), Expect = 5.4
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 55 KLKKYEEALEFHKQALVVAPMKASTFC 81
+ A++ + + + AP A +
Sbjct: 16 TKSDWPNAVKAYTEMIKRAPEDARGYS 42
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 25.7 bits (57), Expect = 1.7
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 49 LGHVNRKLKKYEEALEFHKQALVVAP 74
LG +++ Y+EA+ ++A +A
Sbjct: 83 LGQCQLEMESYDEAIANLQRAYSLAK 108
Score = 23.8 bits (52), Expect = 7.4
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 55 KLKKYEEALEFHKQALVVAPMKASTFC 81
+KY EA + +A+ P+ A +
Sbjct: 21 VGRKYPEAAACYGRAITRNPLVAVYYT 47
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 25.4 bits (56), Expect = 2.1
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
N L K+ AL ++ + V P
Sbjct: 84 YYRRAASNMALGKFRAALRDYETVVKVKP 112
Score = 24.6 bits (54), Expect = 4.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 55 KLKKYEEALEFHKQALVVAPMKASTFC 81
K K YE A++F+ QA+ + P A +
Sbjct: 25 KAKDYENAIKFYSQAIELNPSNAIYYG 51
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 25.8 bits (56), Expect = 2.2
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
LG V EA + + A + P
Sbjct: 314 VLLGKVYEMKGMNREAADAYLTAFNLRP 341
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor,
protein BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 25.0 bits (55), Expect = 2.7
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 55 KLKKYEEALEFHKQALVVAPMKASTFC 81
K Y EA+ + Q + P +
Sbjct: 16 KQGLYREAVHCYDQLITAQPQNPVGYS 42
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 24.9 bits (55), Expect = 3.6
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 49 LGHVNRKLKKYEEALEFHKQALVVAP 74
++++ +A ++ AL V P
Sbjct: 87 KAACLVAMREWSKAQRAYEDALQVDP 112
>1jli_A Interleukin 3, multi-CSF; hematopoietic growth factor,
colony-stimulating factor, cytokine; NMR {Homo sapiens}
SCOP: a.26.1.2
Length = 112
Score = 24.5 bits (52), Expect = 4.4
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 47 NNLGHVNRKLKKYEEALE 64
+ RKL Y + LE
Sbjct: 89 GDWNEFRRKLTFYLKTLE 106
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 24.4 bits (54), Expect = 4.8
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 49 LGHVNRKLKKYEEALEFHKQALVVAP 74
L ++EEA +++ L
Sbjct: 78 KAAALEFLNRFEEAKRTYEEGLKHEA 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 5.0
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 3 LDNVELSSDKSF--SYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 60
L+N + DK + S ++ L V QL ++ LG +L+ Y
Sbjct: 219 LENPSNTPDKDYLLSIPISCP-----LIGVIQLAHYVVT------AKLLGFTPGELRSYL 267
Query: 61 EALEFHKQALVVA 73
+ H Q LV A
Sbjct: 268 KGATGHSQGLVTA 280
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone,
E3 ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 24.5 bits (53), Expect = 6.1
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 55 KLKKYEEALEFHKQALVVAPMKASTFC 81
+KY EA + +A+ P+ A +
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYYT 42
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease,
hydrol hydrolase inhibitor complex; 1.20A {Homo
sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B
1f9e_B* 1qdu_B*
Length = 95
Score = 24.0 bits (52), Expect = 6.5
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 12 KSFSYTVAENCFMEALSKV-KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 68
S+ ++++L + ++ + + +L L VN ++ ++ KQ
Sbjct: 26 VSYRNPAEGTWYIQSLCQSLRERCP-----RGDDILTILTEVNYEVSNKDDKKNMGKQ 78
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 23.9 bits (52), Expect = 9.5
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 49 LGHVNRKLKKYEEALEFHKQALVVAP 74
KL + ++A+ ++ + + P
Sbjct: 105 RSQALEKLGRLDQAVLDLQRCVSLEP 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.384
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,322,819
Number of extensions: 67365
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 377
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)