RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8498
(90 letters)
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 34.3 bits (77), Expect = 8e-04
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
A + +AL + ++ +NL V ++ K +EAL +K+A+ ++P
Sbjct: 324 AVRLYRKALE---------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Score = 33.9 bits (76), Expect = 0.001
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ AE M+ +L L ++ + ++ + + F A+ P
Sbjct: 15 FEAAERHCMQLWR---------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Score = 33.1 bits (74), Expect = 0.002
Identities = 7/46 (15%), Positives = 21/46 (45%)
Query: 38 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
++ + NL V + + A++ +++A+ + P +C +
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
Score = 30.4 bits (67), Expect = 0.022
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
+A + + A+ + + NL + ++ EA + + AL + P
Sbjct: 253 IDLAIDTYRRAIE---------LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 76 KASTFCCI 83
A + +
Sbjct: 304 HADSLNNL 311
Score = 28.9 bits (63), Expect = 0.067
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 21 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
EA + LNNL ++ R+ EEA+ +++AL V P
Sbjct: 285 GSVAEAEDCYNTA--LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
Score = 26.6 bits (57), Expect = 0.50
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAP 74
L H + +E A Q P
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEP 30
Score = 24.6 bits (52), Expect = 2.0
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
NLG+V ++ + ++ A+ + +AL ++P A +
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Score = 22.7 bits (47), Expect = 9.1
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+NLG V + A+ ++A+ + P
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 32.9 bits (73), Expect = 0.003
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 38 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+A+ LG L + A K A+
Sbjct: 204 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240
Score = 30.6 bits (67), Expect = 0.019
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 5/72 (6%)
Query: 11 DKSFSYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ V + L+ + D+ LL G + L A QAL
Sbjct: 10 QPTLQQEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 71 VVAPMKASTFCC 82
+ P F
Sbjct: 65 AIRPDMPEVFNY 76
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 32.6 bits (72), Expect = 0.004
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ AE E + L + L L + + + +A AL +A
Sbjct: 267 FEPAEIVLEELNENARSLR---LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322
Score = 29.5 bits (64), Expect = 0.037
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 4/63 (6%)
Query: 19 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS 78
AE AL ++ + LG V + +L +Q +A
Sbjct: 31 AERLAKLALEELPPGWFYSRIV----ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 86
Query: 79 TFC 81
Sbjct: 87 WHY 89
Score = 23.7 bits (49), Expect = 5.1
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
V +EA K AL P
Sbjct: 14 FNALRAQVAINDGNPDEAERLAKLALEELP 43
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 30.2 bits (67), Expect = 0.017
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+G+ K +KY++A+ F+ ++L
Sbjct: 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
Score = 29.1 bits (64), Expect = 0.037
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82
LG+ K K ++ AL+ + +A + P +
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITN 43
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 30.5 bits (67), Expect = 0.020
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 38 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + NLG L + EA+E +AL +
Sbjct: 235 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271
Score = 24.4 bits (51), Expect = 2.5
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 16 YTVAENCFMEALSKVKQLGGEI--IADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 70
+ A F+EAL+ ++ G E + + L L + + + L
Sbjct: 256 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312
Score = 24.0 bits (50), Expect = 3.1
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAP 74
G + A+ + A+ P
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDP 50
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 29.6 bits (65), Expect = 0.034
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQAL 70
L + R K+ A + +A
Sbjct: 39 LCVQAATIYRLRKELNLAGDSFLKAA 64
Score = 23.0 bits (48), Expect = 8.1
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 42 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ +Y EA + + + + +
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 29.2 bits (64), Expect = 0.035
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82
L G+ + ++AL+ + +A+ + P +
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSN 42
Score = 22.7 bits (47), Expect = 8.0
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 41 KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
W + L ++EEA +++ L
Sbjct: 69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 102
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 29.0 bits (64), Expect = 0.059
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 16 YTVAENCFMEALSKV--------KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 67
Y +A EAL ++ K LG + +L N+ + K +++++A E
Sbjct: 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC-EVLYNIAFMYAKKEEWKKAEEQLA 144
Query: 68 QALVVAP 74
A +
Sbjct: 145 LATSMKS 151
Score = 27.9 bits (61), Expect = 0.14
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 23 FMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82
+ AL + D + N+G + LK EA + +++ A +
Sbjct: 21 WKGALDAFSA-----VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ 75
Score = 23.3 bits (49), Expect = 5.4
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQAL 70
L N G + K ++ AL+
Sbjct: 8 LWNEGVLAADKKDWKGALDAFSAVQ 32
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 28.8 bits (63), Expect = 0.071
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ V ++ ++ E A + + A+ +
Sbjct: 47 DYFRAVLQRDERSERAFKLTRDAIELNA 74
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 28.4 bits (62), Expect = 0.094
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI 83
L G+ +KY EA + +A+ P+ A +
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR 44
Score = 26.5 bits (57), Expect = 0.45
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 38 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
+ + LG +++ Y+EA+ ++A +A
Sbjct: 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 28.2 bits (62), Expect = 0.11
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 47 NNLGHVNRKLKKYEEALEFHKQALVVAP 74
N L + + + ++ +++ V
Sbjct: 190 NQLAILASSKGDHLTTIFYYCRSIAVKF 217
Score = 27.1 bits (59), Expect = 0.26
Identities = 3/32 (9%), Positives = 9/32 (28%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
+ LG ++ K ++ +
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQHC 154
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 27.8 bits (61), Expect = 0.12
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 9 SSDKSFSYTVAENCFM------EALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA 62
S F Y + + +++L + ++ + L N +LK+YE+A
Sbjct: 32 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 91
Query: 63 LEFHKQALVVAP 74
L++ + L P
Sbjct: 92 LKYVRGLLQTEP 103
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138
{Chlorobium tepidum [TaxId: 1097]}
Length = 156
Score = 27.8 bits (60), Expect = 0.12
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 46 LNNLGHVNRKLK--KYEEALEFHKQALVVAP 74
L R+L +Y+EA ++A+ ++
Sbjct: 10 YLALSDAQRQLVAGEYDEAAANCRRAMEISH 40
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 27.7 bits (61), Expect = 0.14
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 45 LLNNLGHVNRKLKKYEEALEFHKQALVVAPM 75
L ++ + +E A E Q++ + P
Sbjct: 32 LRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 27.3 bits (59), Expect = 0.22
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 25 EALSKVKQLGGEIIADKWEPL-LNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
L K+L +KW L + L L +E L++ V PM+A
Sbjct: 257 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 310
Score = 23.8 bits (50), Expect = 4.0
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 31 KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
K+L E ++ + + + E LE Q L P
Sbjct: 17 KRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 25.9 bits (57), Expect = 0.52
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L L KL +Y A +
Sbjct: 76 LYYLTIGCYKLGEYSMAKRYVDTLFEHER 104
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit
tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 145
Score = 26.0 bits (55), Expect = 0.52
Identities = 3/35 (8%), Positives = 11/35 (31%)
Query: 48 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82
+ ++ +E+ + + P+ A
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTR 36
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC)
{Helicobacter pylori [TaxId: 210]}
Length = 265
Score = 25.2 bits (53), Expect = 1.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQA 69
L LG + K K + +A ++ ++A
Sbjct: 5 LVGLGAKSYKEKDFTQAKKYFEKA 28
>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component,
Pyr module {Escherichia coli [TaxId: 562]}
Length = 230
Score = 24.8 bits (54), Expect = 1.6
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 2 DLDNVELSSDKSFSYTVAENCFMEALSKVKQLGGE---IIADK-----WEPLLNNLGHVN 53
D + K S T+A + + K K + IIAD+ E L +G +
Sbjct: 10 DFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYS 69
Query: 54 RKLKKYEE 61
++Y
Sbjct: 70 PNGQQYTP 77
>d1m1eb_ a.161.1.1 (B:) beta-catenin-interacting protein ICAT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 23.7 bits (51), Expect = 2.0
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 24 MEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 60
+ L ++++G + A + E L G VN +L +
Sbjct: 12 VRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLP 48
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 24.7 bits (52), Expect = 2.0
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIVVKE 87
L N+G+ K + +E A++ + + L + +
Sbjct: 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK 71
Score = 23.9 bits (50), Expect = 3.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 42 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
L + LK+Y++AL K+A +AP
Sbjct: 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142
Score = 22.7 bits (47), Expect = 7.4
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 16 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA 62
Y A +A IA + + + L V +K+K ++
Sbjct: 127 YDQALADLKKAQE---------IAPEDKAIQAELLKVKQKIKAQKDK 164
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 24.5 bits (52), Expect = 2.3
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 41 KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 74
E L G + ++E A ++ L V P
Sbjct: 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 24.6 bits (53), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 55 KLKKYEEALEFHKQALVVAPMKASTFC 81
K+Y+E L F ++AL V P KA
Sbjct: 47 TTKEYQE-LNFQREALTVNPAKACQPL 72
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}
Length = 112
Score = 24.1 bits (50), Expect = 2.5
Identities = 4/30 (13%), Positives = 8/30 (26%)
Query: 42 WEPLLNNLGHVNRKLKKYEEALEFHKQALV 71
+ L + AL + L+
Sbjct: 83 DIAVHAALAVSHTNEHNANAALASLRAWLL 112
>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB),
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 23.7 bits (51), Expect = 3.7
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 77
NLG ++ KK E LE +
Sbjct: 97 FANLGILHVTKKKVFETLEARMTEACIRGYNP 128
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2,
NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 83
Score = 22.8 bits (49), Expect = 4.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Query: 44 PLLNNLGHV-----NRKLK--KYEEALEFHKQAL 70
PL NL H +R L KYEEA+ H++A
Sbjct: 4 PL--NLAHQQSRRADRLLAAGKYEEAISCHRKAT 35
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 23.5 bits (49), Expect = 5.2
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQA 69
+ G V K KY++AL +K+
Sbjct: 16 VKERGTVYFKEGKYKQALLQYKKI 39
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 22.7 bits (47), Expect = 8.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 46 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 82
L + K K YE A++F+ QA+ + P A +
Sbjct: 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGN 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.384
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 318,341
Number of extensions: 12376
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 61
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)