BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8499
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 90/187 (48%), Gaps = 5/187 (2%)
Query: 169 EFSSKSYLTEHMKRHQGIKYKCNLCSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNK 227
EF S S + + Y C C K FS +L EH + H E YKC C K +S+K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 228 IYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLK 285
LT H + H G K KC C K FS++ L H + H G K C C K FS +HL+
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 286 EHMQVHQG-ITYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMK 343
H + H G YKC C K F R+ NL H + H G K KC C K FS + L H +
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Query: 344 LHQGIKN 350
H G K
Sbjct: 183 THTGKKT 189
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 84/168 (50%), Gaps = 5/168 (2%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCV 164
Y C C K +S L EH + H G + YKC C K FS K+ LT H + H G K KC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 165 LCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLHQ-EITYKCDLCLK 222
C K FS ++ L H + H G K Y C C K FS ++L H + H E YKC C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 223 EYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKN 269
+S + L H + H G K KC C K FSR+ L H + H G K
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 81/163 (49%), Gaps = 5/163 (3%)
Query: 433 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLC 490
C C K FS HL EH + H G YKC C K F K++LT+H + H G K KC C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 491 SKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEF 548
K FS + +L H + H G K C C K FS + H + H G K KC C K F
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 549 STKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
S + L H + H G + YKC C K FSR+ L H + H G
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 90/187 (48%), Gaps = 5/187 (2%)
Query: 358 EFSCKRYVTEHMKLHQEITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRK 416
EF V + E Y C C K +S +L EH + H G K KC C K FS K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 417 RRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLT 474
+ LT H + H G K KC C K FS +++L+ H + H G Y C C K F + +L
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 475 KHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMK 532
H + H G K KC C K FS + +L H + H G K KC C K FS + ++ H +
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Query: 533 LHLGIKN 539
H G K
Sbjct: 183 THTGKKT 189
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 88/182 (48%), Gaps = 5/182 (2%)
Query: 196 EFSSKSYLTEHMKLHQEITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRK 254
EF S S + + E Y C C K +S +L EH + H G K KC C K FS K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 255 RRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKEFYRKQNLT 312
+ LT H + H G K KC C K FS +++L+ H + H G Y C C K F + +L
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 313 KHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMK 370
H + H G K KC C K FS + L H + H G K KC C K FS + + H +
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Query: 371 LH 372
H
Sbjct: 183 TH 184
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLC 328
C C K FS HL EH + H G YKC C K F K++LT+H + H G K KC C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 329 SKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEY 386
K FS ++ L H + H G K C C K FS ++ H + H E YKC C K +
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 387 SNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKN 431
S + L H + H G K KC C K FSR+ L H + H G K
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 80/165 (48%), Gaps = 5/165 (3%)
Query: 325 CVLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMKLHQ-EITYKCDLC 382
C C K FS +L EH + H G K KC C K FS K+ +T H + H E YKC C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 383 LKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEF 440
K +S + L H + H G K C C K FS+ L H + H G K KC C K F
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 441 SCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLTKHMKLHQGIK 484
S + +L H + H G YKC C K F R+ L H + H G K
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 439 EFSCKSHLKEHMQVHQGITYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTK 497
EF S + + Y C C K F R +L +H + H G K KC C K FS K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 498 CSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLT 555
LT H + H G K KC C K FS + ++ H + H G K C C K FS L
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 556 EHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
H + H G + YKC C K FSR+ L H + H G
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG 158
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKE 466
C K F+ K + HM +HLG++ C +C K+F K HL HM++H GI Y+CN+C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 467 FYRKQNLTKHM 477
F + + +H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKE 304
C K F+ K + HM +HLG++ C +C K+F K HL HM++H GI Y+C++C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 305 FYRKQNLTKHM 315
F + + +H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKE 574
C K F+ K HM +HLG++ C +C K+F KH L HMK+H GI+ Y+C++C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 575 FSRKGRLTEHM 585
F + H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 436 CSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKE 493
C K F+ KS HM +H G+ Y C +C K+F K +L HMK+H GIK +C++C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 494 FSTKCSLTEHM 504
F + S H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCV 164
Y C C K +++K HM +H G+R Y C +C K+F K +L HMK+H G+K +C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 165 LCSKEFSSKSYLTEHM 180
+C+K F + H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK-KCD 515
Y C C K F K +HM +H G++ C +C K+F K L HMK+H GIK +C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 516 LCSKEFSCKRSVTEHM 531
+C+K F + S H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YKCN 191
Y C C K F+ K HM +H G++ C +C K+F K +L HMK H GIK Y+CN
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 192 LCSKEFSSKSYLTEHM 207
+C+K F + H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 274 CSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKE 331
C K F+ KS HM +H G+ Y C +C K+F K +L HMK+H G+K +C +C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 332 FSSKSYLTEHM 342
F + H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN-KCD 353
Y C C K F K +HM +H G++ C +C K+F K +L HMK+H GIK +C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 354 LCSKEF----SCKRYVTE 367
+C+K F S R+VT
Sbjct: 70 ICAKRFMWRDSFHRHVTS 87
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 166 CSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLHQEI-TYKCDLCLKE 223
C K F+ KS HM H G++ Y C +C K+F K +L HMK+H I Y+C++C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 224 YSNKIYLTEHL 234
+ + H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 215 YKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCN 272
Y C C K +++K H+ +H G++ C +C K+F K L HMK+H GIK +CN
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 273 LCSKEFSCKSHLKEHM 288
+C+K F + H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 377 YKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCN 434
Y C C K +++K H+ +H G++ C +C K+F K L HMK+H GIK +CN
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 435 LCSKEFSCKSHLKEHM 450
+C+K F + H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 490 CSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKE 547
C K F+ K HM +H G++ C +C K+F K + HMK+H GIK +C++C+K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 548 FSTKHTLTEHM 558
F + + H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 328 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMKLHQEI-TYKCDLCLKE 385
C K F+ KS HM +H G++ C +C K+F K ++ HMK+H I Y+C++C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 386 YSNKIYLTEHL 396
+ + H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLGI 591
C K F+ K HM +H G+R Y C +C K+F K L HMK+H GI
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDL 300
KC C K FS+ L +H + H G K KC C K FS S L++H + H G YKC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 301 CSKEFYRKQNLTKHMKVHQGMK 322
C K F R +L++H + HQ K
Sbjct: 66 CGKSFSRSDHLSRHQRTHQNKK 87
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 270 KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVL 327
KC C K FS S+L++H + H G YKC C K F + +L KH + H G K KC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 328 CSKEFSSKSYLTEHMKLHQGIK 349
C K FS +L+ H + HQ K
Sbjct: 66 CGKSFSRSDHLSRHQRTHQNKK 87
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YKCN 191
YKC C K FS L +H + H G K KC C K FS S L +H + H G K YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 192 LCSKEFSSKSYLTEHMKLHQ 211
C K FS +L+ H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN-KC 352
YKC C K F + NL KH + H G K KC C K FS S L +H + H G K KC
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 353 DLCSKEFSCKRYVTEHMKLHQ 373
C K FS +++ H + HQ
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQ 84
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 405 KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNL 462
KC C K FS+ L +H + H G K KC C K FS S L++H + H G YKC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 463 CSKEFYRKQNLTKHMKLHQGIK 484
C K F R +L++H + HQ K
Sbjct: 66 CGKSFSRSDHLSRHQRTHQNKK 87
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 162 KCVLCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLHQ-EITYKCDL 219
KC C K FS S L +H + H G K YKC C K FS S L +H + H E YKC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 220 CLKEYSNKIYLTEHLKLHQGIK 241
C K +S +L+ H + HQ K
Sbjct: 66 CGKSFSRSDHLSRHQRTHQNKK 87
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 212 EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKN- 269
E YKC C K +S L +H + H G K KC C K FS+ L +H + H G K
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 270 KCNLCSKEFSCKSHLKEHMQVHQ 292
KC C K FS HL H + HQ
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQ 84
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 374 EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKN- 431
E YKC C K +S L +H + H G K KC C K FS+ L +H + H G K
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQ 454
KC C K FS HL H + HQ
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQ 84
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCV 164
YKC C K +S L +H + H G + YKC C K FS L +H + H G K KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 165 LCSKEFSSKSYLTEHMKRHQGIK 187
C K FS +L+ H + HQ K
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDL 489
KC C K FS S+L++H + H G YKC C K F + +L KH + H G K KC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 490 CSKEFSTKCSLTEHMKLHQGIK 511
C K FS L+ H + HQ K
Sbjct: 66 CGKSFSRSDHLSRHQRTHQNKK 87
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK-KC 514
YKC C K F + NL KH + H G K KC C K FS L +H + H G K KC
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 515 DLCSKEFSCKRSVTEHMKLHLGIK 538
C K FS ++ H + H K
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDL 570
KC C K FS ++ +H + H G K KC C K FS L +H + H G + YKC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 571 CTKEFSRKGRLTEHMKLH 588
C K FSR L+ H + H
Sbjct: 66 CGKSFSRSDHLSRHQRTH 83
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 486 KCDLCSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDL 543
KC C K FS +L +H + H G K KC C K FS + +H + H G K KC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 544 CSKEFSTKHTLTEHMKLHQ 562
C K FS L+ H + HQ
Sbjct: 66 CGKSFSRSDHLSRHQRTHQ 84
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 540 KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
KC C K FS L +H + H G + YKC C K FS+ L +H + H G
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG 57
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 490 CSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKE 547
C + FS K +L H+++H G K +C +C + FS + S+ H++ H G K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 548 FSTKHTLTEHMKLH 561
F+T HT T H K+H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 458 YKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK-K 513
Y C + C + F +K NL H+++H G K +C +C + FS + SL H++ H G K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 514 CDLCSKEFSCKRSVTEHMKLHLGIKN 539
CD+C ++F+ + T H K+HL K+
Sbjct: 65 CDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 296 YKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN-K 351
Y C + C + F +K NL H+++H G K +C +C + FS ++ L H++ H G K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 352 CDLCSKEFSCKRYVTEHMKLH 372
CD+C ++F+ T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 134 YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YK 189
Y C + C + FS K L H+++H G K +C +C + FS ++ L H++ H G K +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 190 CNLCSKEFSSKSYLTEHMKLH 210
C++C ++F++ T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKE 304
C + FS+K L H+++H G K +C +C + FS ++ L H++ H G + CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 305 FYRKQNLTKHMKVHQGMKN 323
F T+H K+H K+
Sbjct: 72 FATLHTRTRHTKIHLRQKD 90
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKE 574
C + FS K ++ H+++H G K +C +C + FS + +L H++ H G + + CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 575 FSRKGRLTEHMKLHL 589
F+ T H K+HL
Sbjct: 72 FATLHTRTRHTKIHL 86
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKE 466
C + FS+K L H+++H G K +C +C + FS ++ L H++ H G + C++C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 467 FYRKQNLTKHMKLH 480
F T+H K+H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 187 KYKCNL--CSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN- 242
Y C + C + FS K+ L H+++H + ++C +C++ +S + L H++ H G K
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN 269
C +C ++F+ T H K+HL K+
Sbjct: 64 ACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 107 YKCDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-K 162
Y C + C + +S K L H+++H G + ++C +C + FS + L H++ H G K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 163 CVLCSKEFSSKSYLTEHMKRH 183
C +C ++F++ T H K H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 355 CSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKE 412
C + FS K + H+++H + ++C +C++ +S + L H++ H G K C +C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 413 FSRKRRLTEHMKLHLGIKN 431
F+ T H K+HL K+
Sbjct: 72 FATLHTRTRHTKIHLRQKD 90
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN 161
++C +C + +S + +L H++ H G + + CD+C ++F+ T H K+H K+
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
C + FS K L H+++H G + ++C +C + FS++ L H++ H G
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKE 304
C + FSR LT H+++H G K +C +C + FS HL H++ H G + CD+C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 305 FYRKQNLTKHMKVHQGMKN 323
F R +H K+H K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKE 466
C + FSR LT H+++H G K +C +C + FS HL H++ H G + C++C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 467 FYRKQNLTKHMKLH 480
F R +H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 295 TYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN- 350
Y C + C + F R LT+H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 351 KCDLCSKEFSCKRYVTEHMKLH 372
CD+C ++F+ H K+H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 457 TYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK- 512
Y C + C + F R LT+H+++H G K +C +C + FS LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLGIKN 539
CD+C ++F+ H K+HL K+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 187 KYKCNL--CSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN- 242
Y C + C + FS + LT H+++H + ++C +C++ +S +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN 269
C +C ++F+R H K+HL K+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 134 YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YK 189
Y C + C + FS LT H+++H G K +C +C + FS +LT H++ H G K +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 190 CNLCSKEFSSKSYLTEHMKLH 210
C++C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKE 574
C + FS +T H+++H G K +C +C + FS LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 575 FSRKGRLTEHMKLHL 589
F+R H K+HL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 436 CSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKE 493
C + FS + L H+++H G ++C +C + F R +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 494 FSTKCSLTEHMKLH 507
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 355 CSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKE 412
C + FS +T H+++H + ++C +C++ +S +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 413 FSRKRRLTEHMKLHLGIKN 431
F+R H K+HL K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 274 CSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKE 331
C + FS + L H+++H G ++C +C + F R +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 FSSKSYLTEHMKLH 345
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 YKCDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-K 162
Y C + C + +S LT H+++H G + ++C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CVLCSKEFSSKSYLTEHMKRH 183
C +C ++F+ H K H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
C + FS LT H+++H G + ++C +C + FSR LT H++ H G
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN 161
++C +C + +S LT H++ H G + + CD+C ++F+ H K+H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKE 304
C + FSR LT H+++H G K +C +C + FS HL H++ H G + CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 305 FYRKQNLTKHMKVHQGMKN 323
F R +H K+H K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKE 466
C + FSR LT H+++H G K +C +C + FS HL H++ H G + C++C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 467 FYRKQNLTKHMKLH 480
F R +H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 295 TYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN- 350
Y C + C + F R LT+H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 351 KCDLCSKEFSCKRYVTEHMKLH 372
CD+C ++F+ H K+H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 457 TYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK- 512
Y C + C + F R LT+H+++H G K +C +C + FS LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLGIKN 539
CD+C ++F+ H K+HL K+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 134 YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YK 189
Y C + C + FS LT H+++H G K +C +C + FS +LT H++ H G K +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 190 CNLCSKEFSSKSYLTEHMKLH 210
C++C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 187 KYKCNL--CSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN- 242
Y C + C + FS LT H+++H + ++C +C++ +S +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN 269
C +C ++F+R H K+HL K+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKE 574
C + FS +T H+++H G K +C +C + FS LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 575 FSRKGRLTEHMKLHL 589
F+R H K+HL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 436 CSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKE 493
C + FS L H+++H G ++C +C + F R +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 494 FSTKCSLTEHMKLH 507
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 355 CSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKE 412
C + FS +T H+++H + ++C +C++ +S +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 413 FSRKRRLTEHMKLHLGIKN 431
F+R H K+HL K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 274 CSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKE 331
C + FS L H+++H G ++C +C + F R +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 FSSKSYLTEHMKLH 345
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 YKCDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-K 162
Y C + C + +S LT H+++H G + ++C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CVLCSKEFSSKSYLTEHMKRH 183
C +C ++F+ H K H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
C + FS LT H+++H G + ++C +C + FSR LT H++ H G
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN 161
++C +C + +S LT H++ H G + + CD+C ++F+ H K+H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKE 304
C + FSR LT H+++H G K +C +C + FS HL H++ H G + CD+C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 305 FYRKQNLTKHMKVHQGMKN 323
F R +H K+H K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 295 TYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN- 350
Y C + C + F R +LT+H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 351 KCDLCSKEFSCKRYVTEHMKLH 372
CD+C ++F+ H K+H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKE 466
C + FSR LT H+++H G K +C +C + FS HL H++ H G + C++C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 467 FYRKQNLTKHMKLH 480
F R +H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 457 TYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK- 512
Y C + C + F R +LT+H+++H G K +C +C + FS LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLGIKN 539
CD+C ++F+ H K+HL K+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 187 KYKCNL--CSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN- 242
Y C + C + FS + LT H+++H + ++C +C++ +S +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN 269
C +C ++F+R H K+HL K+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 134 YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YK 189
Y C + C + FS LT H+++H G K +C +C + FS +LT H++ H G K +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 190 CNLCSKEFSSKSYLTEHMKLH 210
C++C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKE 574
C + FS +T H+++H G K +C +C + FS LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 575 FSRKGRLTEHMKLHL 589
F+R H K+HL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 436 CSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKE 493
C + FS + L H+++H G ++C +C + F R +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 494 FSTKCSLTEHMKLH 507
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 355 CSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKE 412
C + FS +T H+++H + ++C +C++ +S +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 413 FSRKRRLTEHMKLHLGIKN 431
F+R H K+HL K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 274 CSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKE 331
C + FS + L H+++H G ++C +C + F R +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 FSSKSYLTEHMKLH 345
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 YKCDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-K 162
Y C + C + +S LT H+++H G + ++C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CVLCSKEFSSKSYLTEHMKRH 183
C +C ++F+ H K H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
C + FS LT H+++H G + ++C +C + FSR LT H++ H G
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN 161
++C +C + +S LT H++ H G + + CD+C ++F+ H K+H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKE 304
C + FSR LT H+++H G K +C +C + FS HL H++ H G + CD+C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 305 FYRKQNLTKHMKVH 318
F R +H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKE 466
C + FSR LT H+++H G K +C +C + FS HL H++ H G + C++C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 467 FYRKQNLTKHMKLH 480
F R +H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 295 TYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN- 350
Y C + C + F R LT+H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 351 KCDLCSKEFSCKRYVTEHMKLH 372
CD+C ++F+ H K+H
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 457 TYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK- 512
Y C + C + F R LT+H+++H G K +C +C + FS LT H++ H G K
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 513 KCDLCSKEFSCKRSVTEHMKLHL 535
CD+C ++F+ H K+HL
Sbjct: 63 ACDICGRKFARSDERKRHTKIHL 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 134 YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YK 189
Y C + C + FS LT H+++H G K +C +C + FS +LT H++ H G K +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 190 CNLCSKEFSSKSYLTEHMKLH 210
C++C ++F+ H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 187 KYKCNL--CSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN- 242
Y C + C + FS LT H+++H + ++C +C++ +S +LT H++ H G K
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 243 KCVLCSKEFSRKRRLTEHMKLHL 265
C +C ++F+R H K+HL
Sbjct: 63 ACDICGRKFARSDERKRHTKIHL 85
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKE 574
C + FS +T H+++H G K +C +C + FS LT H++ H G + + CD+C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 575 FSRKGRLTEHMKLHL 589
F+R H K+HL
Sbjct: 71 FARSDERKRHTKIHL 85
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 212 EITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIK 268
E Y C + C + +S LT H+++H G K +C +C + FSR LT H++ H G K
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 269 N-KCNLCSKEFSCKSHLKEHMQVH 291
C++C ++F+ K H ++H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 374 EITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIK 430
E Y C + C + +S LT H+++H G K +C +C + FSR LT H++ H G K
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 431 N-KCNLCSKEFSCKSHLKEHMQVH 453
C++C ++F+ K H ++H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 436 CSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKE 493
C + FS L H+++H G ++C +C + F R +LT H++ H G K CD+C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 494 FSTKCSLTEHMKLH 507
F+ H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 355 CSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKE 412
C + FS +T H+++H + ++C +C++ +S +LT H++ H G K C +C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 413 FSRKRRLTEHMKLHL 427
F+R H K+HL
Sbjct: 71 FARSDERKRHTKIHL 85
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 274 CSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKE 331
C + FS L H+++H G ++C +C + F R +LT H++ H G K C +C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 332 FSSKSYLTEHMKLH 345
F+ H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 490 CSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKE 547
C + FS LT H+++H G K +C +C + FS +T H++ H G K CD+C ++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 548 FSTKHTLTEHMKLH 561
F+ H K+H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 YKCDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-K 162
Y C + C + +S LT H+++H G + ++C +C + FS +LT H++ H G K
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 163 CVLCSKEFSSKSYLTEHMKRH 183
C +C ++F+ H K H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
C + FS LT H+++H G + ++C +C + FSR LT H++ H G
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 58
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKE 304
C + FSR LT H+++H G K +C +C + FS HL H++ H G + CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 305 FYRKQNLTKHMKVH 318
F R +H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKE 466
C + FSR LT H+++H G K +C +C + FS HL H++ H G + C++C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 467 FYRKQNLTKHMKLH 480
F R +H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 295 TYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN- 350
Y C + C + F R LT+H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 351 KCDLCSKEFSCKRYVTEHMKLH 372
CD+C ++F+ H K+H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 457 TYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK- 512
Y C + C + F R LT+H+++H G K +C +C + FS LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 513 KCDLCSKEFSCKRSVTEHMKLHL 535
CD+C ++F+ H K+HL
Sbjct: 64 ACDICGRKFARSDERKRHTKIHL 86
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 134 YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YK 189
Y C + C + FS LT H+++H G K +C +C + FS +LT H++ H G K +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 190 CNLCSKEFSSKSYLTEHMKLH 210
C++C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 187 KYKCNL--CSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN- 242
Y C + C + FS LT H+++H + ++C +C++ +S +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 243 KCVLCSKEFSRKRRLTEHMKLHL 265
C +C ++F+R H K+HL
Sbjct: 64 ACDICGRKFARSDERKRHTKIHL 86
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKE 574
C + FS +T H+++H G K +C +C + FS LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 575 FSRKGRLTEHMKLHL 589
F+R H K+HL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 212 EITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIK 268
E Y C + C + +S LT H+++H G K +C +C + FSR LT H++ H G K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 269 N-KCNLCSKEFSCKSHLKEHMQVH 291
C++C ++F+ K H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 374 EITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIK 430
E Y C + C + +S LT H+++H G K +C +C + FSR LT H++ H G K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 431 N-KCNLCSKEFSCKSHLKEHMQVH 453
C++C ++F+ K H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 436 CSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKE 493
C + FS L H+++H G ++C +C + F R +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 494 FSTKCSLTEHMKLH 507
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 355 CSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKE 412
C + FS +T H+++H + ++C +C++ +S +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 413 FSRKRRLTEHMKLHL 427
F+R H K+HL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 274 CSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKE 331
C + FS L H+++H G ++C +C + F R +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 FSSKSYLTEHMKLH 345
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 490 CSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKE 547
C + FS LT H+++H G K +C +C + FS +T H++ H G K CD+C ++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 548 FSTKHTLTEHMKLH 561
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 YKCDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-K 162
Y C + C + +S LT H+++H G + ++C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CVLCSKEFSSKSYLTEHMKRH 183
C +C ++F+ H K H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
C + FS LT H+++H G + ++C +C + FSR LT H++ H G
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKE 304
C + FS+ LT H+++H G K +C +C + FS HL H++ H G + CD+C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 305 FYRKQNLTKHMKVHQGMKN 323
F R +H K+H K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKE 574
C + FS S+T H+++H G K +C +C + FS LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 575 FSRKGRLTEHMKLHL 589
F+R H K+HL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 187 KYKCNL--CSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN- 242
Y C + C + FS LT H+++H + ++C +C++ +S +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN 269
C +C ++F+R H K+HL K+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKE 466
C + FS+ LT H+++H G K +C +C + FS HL H++ H G + C++C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 467 FYRKQNLTKHMKLH 480
F R +H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 295 TYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN- 350
Y C + C + F + +LT+H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 351 KCDLCSKEFSCKRYVTEHMKLH 372
CD+C ++F+ H K+H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 134 YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YK 189
Y C + C + FS LT H+++H G K +C +C + FS +LT H++ H G K +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 190 CNLCSKEFSSKSYLTEHMKLH 210
C++C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 457 TYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK- 512
Y C + C + F + +LT+H+++H G K +C +C + FS LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLGIKN 539
CD+C ++F+ H K+HL K+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 436 CSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKE 493
C + FS L H+++H G ++C +C + F R +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 494 FSTKCSLTEHMKLH 507
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 490 CSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKE 547
C + FS SLT H+++H G K +C +C + FS +T H++ H G K CD+C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 548 FSTKHTLTEHMKLH 561
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 355 CSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKE 412
C + FS +T H+++H + ++C +C++ +S +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 413 FSRKRRLTEHMKLHLGIKN 431
F+R H K+HL K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 274 CSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKE 331
C + FS L H+++H G ++C +C + F R +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 FSSKSYLTEHMKLH 345
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 107 YKCDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-K 162
Y C + C + +S +LT H+++H G + ++C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CVLCSKEFSSKSYLTEHMKRH 183
C +C ++F+ H K H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
C + FS +LT H+++H G + ++C +C + FSR LT H++ H G
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN 161
++C +C + +S LT H++ H G + + CD+C ++F+ H K+H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKE 304
C + FS LT H+++H G K +C +C + FS HL H++ H G + CD+C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 305 FYRKQNLTKHMKVHQGMKN 323
F R +H K+H K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 187 KYKCNL--CSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN- 242
Y C + C + FS S LT H+++H + ++C +C++ +S +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN 269
C +C ++F+R H K+HL K+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 295 TYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN- 350
Y C + C + F NLT+H+++H G K +C +C + FS +LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 351 KCDLCSKEFSCKRYVTEHMKLH 372
CD+C ++F+ H K+H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 457 TYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK- 512
Y C + C + F NLT+H+++H G K +C +C + FS LT H++ H G K
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLGIKN 539
CD+C ++F+ H K+HL K+
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 134 YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YK 189
Y C + C + FS LT H+++H G K +C +C + FS +LT H++ H G K +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 190 CNLCSKEFSSKSYLTEHMKLH 210
C++C ++F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKE 466
C + FS LT H+++H G K +C +C + FS HL H++ H G + C++C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 467 FYRKQNLTKHMKLH 480
F R +H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKE 574
C + FS ++T H+++H G K +C +C + FS LT H++ H G + + CD+C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 575 FSRKGRLTEHMKLHL 589
F+R H K+HL
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 436 CSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKE 493
C + FS S+L H+++H G ++C +C + F R +LT H++ H G K CD+C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 494 FSTKCSLTEHMKLH 507
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 274 CSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKE 331
C + FS S+L H+++H G ++C +C + F R +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 332 FSSKSYLTEHMKLH 345
F+ H K+H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 355 CSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKE 412
C + FS +T H+++H + ++C +C++ +S +LT H++ H G K C +C ++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 413 FSRKRRLTEHMKLHLGIKN 431
F+R H K+HL K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 YKCDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-K 162
Y C + C + +S LT H+++H G + ++C +C + FS +LT H++ H G K
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 163 CVLCSKEFSSKSYLTEHMKRH 183
C +C ++F+ H K H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
C + FS LT H+++H G + ++C +C + FSR LT H++ H G
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN 161
++C +C + +S LT H++ H G + + CD+C ++F+ H K+H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 490 CSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKE 547
C + FS K +L H+++H G K +C +C + FS + +H++ H G K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 548 FSTKHTLTEHMKLH 561
F+T HT H K+H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 458 YKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK-K 513
Y C + C + F +K NL H+++H G K +C +C + FS L +H++ H G K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 514 CDLCSKEFSCKRSVTEHMKLHLGIKN 539
CD+C ++F+ + H K+HL K+
Sbjct: 65 CDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 296 YKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN-K 351
Y C + C + F +K NL H+++H G K +C +C + FS + L +H++ H G K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 352 CDLCSKEFSCKRYVTEHMKLH 372
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 436 CSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKE 493
C + FS K++L H+++H G ++C +C + F + L +H++ H G K CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 494 FSTKCSLTEHMKLH 507
F+T + H K+H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 134 YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YK 189
Y C + C + FS K L H+++H G K +C +C + FS + L +H++ H G K +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 190 CNLCSKEFSSKSYLTEHMKLH 210
C++C ++F++ H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKE 304
C + FS+K L H+++H G K +C +C + FS + L +H++ H G + CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 305 FYRKQNLTKHMKVH 318
F +H K+H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 187 KYKCNL--CSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN- 242
Y C + C + FS K+ L H+++H + ++C +C++ +S L +H++ H G K
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN 269
C +C ++F+ H K+HL K+
Sbjct: 64 ACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKE 466
C + FS+K L H+++H G K +C +C + FS + L +H++ H G + C++C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 467 FYRKQNLTKHMKLH 480
F +H K+H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKE 574
C + FS K ++ H+++H G K +C +C + FS L +H++ H G + + CD+C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 575 FSRKGRLTEHMKLHL 589
F+ H K+HL
Sbjct: 72 FATLHTRDRHTKIHL 86
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 107 YKCDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-K 162
Y C + C + +S K L H+++H G + ++C +C + FS L +H++ H G K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 163 CVLCSKEFSSKSYLTEHMKRH 183
C +C ++F++ H K H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 355 CSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKE 412
C + FS K + H+++H + ++C +C++ +S L +H++ H G K C +C ++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 413 FSRKRRLTEHMKLHLGIKN 431
F+ H K+HL K+
Sbjct: 72 FATLHTRDRHTKIHLRQKD 90
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
C + FS K L H+++H G + ++C +C + FS+ L +H++ H G
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 162 KCVLCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLH-QEITYKCDL 219
KC +C K FS K L HM+ H G+K YKC C + S L +H+++H E +KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 220 CLKEYSNKIYLTEHLKLHQG 239
C N LT HL+ H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDL 300
KC +C K FSRK +L HM+ H G+K KC C + S L +H+++H +KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 301 CSKEFYRKQNLTKHMKVHQG 320
C LT H++ H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 405 KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNL 462
KC +C K FSRK +L HM+ H G+K KC C + S L +H+++H +KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 463 CSKEFYRKQNLTKHMKLHQG 482
C LT H++ H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 324 KCVLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMKLHQ-EITYKCDL 381
KC +C K FS K L HM+ H G+K KC C + + +H+++H E +KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 382 CLKEYSNKIYLTEHLKLHQG 401
C N LT HL+ H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDL 570
KC++C K FS K + HM+ H G+K KC C + +L +H+++H R +KC +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 571 CTKEFSRKGRLTEHMKLHLG 590
C +LT H++ H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCV 164
+KC++C K +S K L HM+ H G++ YKC C + L +H+++H + KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 165 LCSKEFSSKSYLTEHMKRHQG 185
+C + S LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK-KC 514
+KC +C K F RK L HM+ H G+K KC C + SL +H+++H + KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 515 DLCSKEFSCKRSVTEHMKLHLG 536
+C +T H++ H G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 214 TYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKN-KC 271
+KC++C K +S K L H++ H G+K KC C + L +H+++H + KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 272 NLCSKEFSCKSHLKEHMQVHQG 293
+C S L H++ H G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 376 TYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKN-KC 433
+KC++C K +S K L H++ H G+K KC C + L +H+++H + KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 434 NLCSKEFSCKSHLKEHMQVHQG 455
+C S L H++ H G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLGI 591
+KC++C K FSRK +L HM+ H G+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGV 34
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 274 CSKEFSCKSHLKEHMQVHQG-ITYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCS 329
C+K ++ SHLK H++ H G YKC C F R LT+H + H G K +C +C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 330 KEFSSKSYLTEHMKLHQ 346
+ FS +L HMK HQ
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 436 CSKEFSCKSHLKEHMQVHQG-ITYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCS 491
C+K ++ SHLK H++ H G YKC C F R LT+H + H G K +C +C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 492 KEFSTKCSLTEHMKLHQ 508
+ FS L HMK HQ
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 136 CDL--CSKEFSCKRYLTEHMKVHQGMKN-KCVL--CSKEFSSKSYLTEHMKRHQGIK-YK 189
CD C+K ++ +L H++ H G K KC C F+ LT H ++H G K ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 190 CNLCSKEFSSKSYLTEHMKLHQ 211
C +C++ FS +L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 109 CDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-K 162
CD C+K Y+ L H++ H G + YKC C F+ LT H + H G K +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 163 CVLCSKEFSSKSYLTEHMKRHQ 184
C +C++ FS +L HMKRHQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 193 CSKEFSSKSYLTEHMKLHQ-EITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-KCVLCS 248
C+K ++ S+L H++ H E YKC C ++ LT H + H G K +C +C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 249 KEFSRKRRLTEHMKLH 264
+ FSR L HMK H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 298 CDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVL--CSKEFSSKSYLTEHMKLHQGIKN-K 351
CD C+K + + +L H++ H G K KC C F+ LT H + H G K +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 352 CDLCSKEFSCKRYVTEHMKLHQ 373
C +C++ FS ++ HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNL--CSKEFSCKSHLKEHMQVHQGI-TYKCNLCS 464
C+K +++ L H++ H G K KC C F+ L H + H G ++C +C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 465 KEFYRKQNLTKHMKLHQ 481
+ F R +L HMK HQ
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNL--CSKEFSCKSHLKEHMQVHQGI-TYKCDLCS 302
C+K +++ L H++ H G K KC C F+ L H + H G ++C +C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 303 KEFYRKQNLTKHMKVHQ 319
+ F R +L HMK HQ
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 166 CSKEFSSKSYLTEHMKRHQGIK-YKCNL--CSKEFSSKSYLTEHMKLHQEI-TYKCDLCL 221
C+K ++ S+L H++ H G K YKC C F+ LT H + H ++C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 222 KEYSNKIYLTEHLKLHQ 238
+ +S +L H+K HQ
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 514 CDL--CSKEFSCKRSVTEHMKLHLGIKN-KCDL--CSKEFSTKHTLTEHMKLHQGIR-YK 567
CD C+K ++ + H++ H G K KC C F+ LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 568 CDLCTKEFSRKGRLTEHMKLH 588
C +C + FSR L HMK H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 487 CDL--CSKEFSTKCSLTEHMKLHQGIKK-KCDL--CSKEFSCKRSVTEHMKLHLGIKN-K 540
CD C+K ++ L H++ H G K KC C F+ +T H + H G K +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 541 CDLCSKEFSTKHTLTEHMKLHQ 562
C +C++ FS L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 352 CDL--CSKEFSCKRYVTEHMKLHQ-EITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-K 405
CD C+K ++ ++ H++ H E YKC C ++ LT H + H G K +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 406 CVLCSKEFSRKRRLTEHMKLH 426
C +C++ FSR L HMK H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 328 CSKEFSSKSYLTEHMKLHQGIKN-KCDL--CSKEFSCKRYVTEHMKLHQEI-TYKCDLCL 383
C+K ++ S+L H++ H G K KC C F+ +T H + H ++C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 384 KEYSNKIYLTEHLKLHQ 400
+ +S +L H+K HQ
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 541 CDL--CSKEFSTKHTLTEHMKLHQGIR-YKCDL--CTKEFSRKGRLTEHMKLHLGI 591
CD C+K ++ L H++ H G + YKC C F+R LT H + H G
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 378 KCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKNK---- 432
+C C K++ +K YL H + H G K +C C K + RK L EH + +++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 433 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLTKHM-KLHQG 482
C++C + F + L+ HM H G + YKC+ CS++F +K++L HM KLH G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 216 KCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKNK---- 270
+C C K++ +K YL H + H G K +C C K + RK L EH + +++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 271 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKEFYRKQNLTKHM-KVHQG 320
C++C + F + L+ HM H G + YKC CS++F +K++L HM K+H G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 162 KCVLCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLH----QEITYK 216
+C C K+F SK YL H ++H G K ++C C K + K L EH + E +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 217 CDLCLKEYSNKIYLTEHLKLHQG-IKNKCVLCSKEFSRKRRLTEHM-KLHLG 266
C +C + + ++ L H+ H G + KC CS++F +K+ L HM KLH G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 324 KCVLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMKLH----QEITYK 378
+C C K+F SK YL H + H G K +C C K + K + EH + E +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 379 CDLCLKEYSNKIYLTEHLKLHQG-IKNKCVLCSKEFSRKRRLTEHM-KLHLG 428
C +C + + ++ L H+ H G + KC CS++F +K+ L HM KLH G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 135 KCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEH-----MKRHQGIKY 188
+C C K+F K YL H + H G K +C C K + K L EH M R + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 189 KCNLCSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHL-KLHQG 239
C++C + F + L HM H E+ YKC C +++ K L H+ KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 106 GYKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKNK-- 162
G +C C K++ K+ L H + H G + ++C C K + K L EH + +++
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 163 --CVLCSKEFSSKSYLTEHMKRHQG-IKYKCNLCSKEFSSKSYLTEHM-KLH 210
C +C + F + L HM H G + YKC+ CS++F K L HM KLH
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 486 KCDLCSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIKNK---- 540
+C C K+F +K L H + H G K +C C K + K ++ EH + +++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 541 CDLCSKEFSTKHTLTEHMKLHQG-IRYKCDLCTKEFSRKGRLTEHM-KLHLG 590
C +C + F + L HM H G + YKC C+++F +K L HM KLH G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 459 KCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEH-----MKLHQGIKK 512
+C C K+F K L H + H G K +C C K + K +L EH M + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLG-IKNKCDLCSKEFSTKHTLTEHM-KLHQG 563
C +C + F + + HM H G + KC CS++F K L HM KLH G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 297 KCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEH-----MKLHQGIKN 350
+C C K+F K L H + H G K +C C K + K L EH M + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 351 KCDLCSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHL-KLHQG 401
C +C + F + + HM H E+ YKC C +++ K L H+ KLH G
Sbjct: 69 -CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQG-IRYKCDLCSKEFSCKRYLTEHM-KVHQG 158
+ C +C + + + L HM H G + YKC CS++F K+ L HM K+H G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKEFYRKQNLTKHMKVHQGMK-NKCVLC 328
C +C K F S L H+ +H Y C C K F++K ++ KH +H G K +KC +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 329 SKEFSSKSYLTEHMKLHQG 347
K FS S L H + H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMK-NKCV 164
+ C +C K + TL+ H+ +H R Y C C K F K + +H +H G K +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 165 LCSKEFSSKSYLTEHMKRHQG 185
+C K FS S L H ++H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 433 CNLCSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLC 490
C +C K F S L H+ +H Y C C K F++K ++ KH +H G K KC +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 491 SKEFSTKCSLTEHMKLHQG 509
K FS +L H + H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 188 YKCNLCSKEFSSKSYLTEHMKLHQEI-TYKCDLCLKEYSNKIYLTEHLKLHQGIK-NKCV 245
+ C +C K F S L+ H+ +H + Y C C K + K + +H +H G K +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 246 LCSKEFSRKRRLTEHMKLHLG 266
+C K FS+ L H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK-KC 514
++ C +C K F R L+ H+ +H + C C K F K + +H +H G K KC
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 515 DLCSKEFSCKRSVTEHMKLHLG 536
+C K FS ++ H + H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIK-NKC 352
++ C +C K F R L+ H+ +H + C C K F KS + +H +H G K +KC
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 353 DLCSKEFSCKRYVTEHMKLH 372
+C K FS + H + H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 214 TYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIK-NKC 271
++ C +C K + L+ HL +H + C C K F +K + +H +H G K +KC
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 272 NLCSKEFSCKSHLKEHMQVHQG 293
+C K FS S+L H + H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 376 TYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIK-NKC 433
++ C +C K + L+ HL +H + C C K F +K + +H +H G K +KC
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 434 NLCSKEFSCKSHLKEHMQVHQG 455
+C K FS S+L H + H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YKCN 191
+ C +C K F L+ H+ +H + C C K F KS + +H H G K +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 192 LCSKEFSSKSYLTEHMKLH 210
+C K FS S L H + H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 514 CDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLC 571
C +C K F +++ H+ +H + C C K F K + +H +H G + +KC +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 572 TKEFSRKGRLTEHMKLHLG 590
K FS+ L H + H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 325 CVLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMKLHQ-EITYKCDLC 382
C +C K F S L+ H+ +H + C C K F K + +H +H E +KC +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 383 LKEYSNKIYLTEHLKLHQG 401
K +S L H + H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 382 CLKEYSNKIYLTEHLKLHQGIKN-KCVL--CSKEFSRKRRLTEHMKLHLGIKN-KCNLCS 437
C K Y +L H + H G K +C C + FSR +L H + H G+K +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 438 KEFSCKSHLKEHMQVHQG-ITYKCNL--CSKEFYRKQNLTKHMKLH 480
++FS HLK H + H G + C C K+F R L +H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 220 CLKEYSNKIYLTEHLKLHQGIKN-KCVL--CSKEFSRKRRLTEHMKLHLGIKN-KCNLCS 275
C K Y +L H + H G K +C C + FSR +L H + H G+K +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 276 KEFSCKSHLKEHMQVHQG---ITYKCDLCSKEFYRKQNLTKHMKVH 318
++FS HLK H + H G + + C K+F R L +H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 274 CSKEFSCKSHLKEHMQVHQG-ITYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCS 329
C+K + SHL+ H + H G Y+CD C + F R L +H + H G+K +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 330 KEFSSKSYLTEHMKLHQGIKN---KCDLCSKEFSCKRYVTEHMKLH 372
++FS +L H + H G K + C K+F+ + H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 166 CSKEFSSKSYLTEHMKRHQGIK-YKCNL--CSKEFSSKSYLTEHMKLHQEI-TYKCDLCL 221
C+K + S+L H ++H G K Y+C+ C + FS L H + H + ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 222 KEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHMKLH 264
+++S +L H + H G K + C K+F+R L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 436 CSKEFSCKSHLKEHMQVHQG-ITYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCS 491
C+K + SHL+ H + H G Y+C+ C + F R L +H + H G+K +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 492 KEFSTKCSLTEHMKLHQGIKK---KCDLCSKEFSCKRSVTEHMKLH 534
++FS L H + H G K + C K+F+ + H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNL--CSKEFSCKSHLKEHMQVHQGI-TYKCDLCS 302
C+K + + L H + H G K +C+ C + FS LK H + H G+ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 303 KEFYRKQNLTKHMKVHQGMKN---KCVLCSKEFSSKSYLTEHMKLH 345
++F R +L H + H G K + C K+F+ L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 463 CSKEFYRKQNLTKHMKLHQGIKK-KCDL--CSKEFSTKCSLTEHMKLHQGIKK-KCDLCS 518
C+K +++ +L H + H G K +CD C + FS L H + H G+K +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 519 KEFSCKRSVTEHMKLHLGIKN---KCDLCSKEFSTKHTLTEHMKLH 561
++FS + H + H G K + C K+F+ L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNL--CSKEFSCKSHLKEHMQVHQGI-TYKCNLCS 464
C+K + + L H + H G K +C+ C + FS LK H + H G+ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 465 KEFYRKQNLTKHMKLHQGIKK---KCDLCSKEFSTKCSLTEHMKLH 507
++F R +L H + H G K + C K+F+ L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 328 CSKEFSSKSYLTEHMKLHQGIKN-KCDL--CSKEFSCKRYVTEHMKLHQEI-TYKCDLCL 383
C+K + S+L H + H G K +CD C + FS + H + H + ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 384 KEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHMKLH 426
+++S +L H + H G K + C K+F+R L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 139 CSKEFSCKRYLTEHMKVHQGMKN-KCVL--CSKEFSSKSYLTEHMKRHQGIK-YKCNLCS 194
C+K + +L H + H G K +C C + FS L H +RH G+K ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 195 KEFSSKSYLTEHMKLHQ-EITYKCDL--CLKEYSNKIYLTEHLKLH 237
++FS +L H + H E + C C K+++ L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 490 CSKEFSTKCSLTEHMKLHQGIKK-KCDL--CSKEFSCKRSVTEHMKLHLGIKN-KCDLCS 545
C+K + L H + H G K +CD C + FS + H + H G+K +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 546 KEFSTKHTLTEHMKLHQGIR-YKCDL--CTKEFSRKGRLTEHMKLH 588
++FS L H + H G + + C C K+F+R L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 107 YKCDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-- 161
Y+CD C + +S L H + H G++ ++C C ++FS +L H + H G K
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 162 -KCVLCSKEFSSKSYLTEHMKRH 183
+ C K+F+ L H H
Sbjct: 97 CRWPSCQKKFARSDELVRHHNMH 119
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 530 HMKLHLGIKN-KCDL--CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHM 585
H + H G K +CD C + FS L H + H G++ ++C C ++FSR L H
Sbjct: 27 HSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Query: 586 KLHLG 590
+ H G
Sbjct: 87 RTHTG 91
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDL--CTKEFSRKGRLTEHMKLHLGI 591
C+K + L H + H G + Y+CD C + FSR +L H + H G+
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 274 CSKEFSCKSHLKEHMQVHQG-ITYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCS 329
C K ++ SHLK H++ H G Y CD C +F R LT+H + H G + +C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 330 KEFSSKSYLTEHMKLH 345
+ FS +L HMK H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 436 CSKEFSCKSHLKEHMQVHQG-ITYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCS 491
C K ++ SHLK H++ H G Y C+ C +F R LT+H + H G + +C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 492 KEFSTKCSLTEHMKLH 507
+ FS L HMK H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 211 QEITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHMKLHL 265
+ T+ CD C K Y+ +L HL+ H G K C +F+R LT H + H
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 266 GIKN-KCNLCSKEFSCKSHLKEHMQVH 291
G + +C C + FS HL HM+ H
Sbjct: 63 GHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 373 QEITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHMKLHL 427
+ T+ CD C K Y+ +L HL+ H G K C +F+R LT H + H
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 428 GIKN-KCNLCSKEFSCKSHLKEHMQVH 453
G + +C C + FS HL HM+ H
Sbjct: 63 GHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 193 CSKEFSSKSYLTEHMKLHQ-EITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-KCVLCS 248
C K ++ S+L H++ H E Y CD C +++ LT H + H G + +C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 249 KEFSRKRRLTEHMKLHL 265
+ FSR L HMK H
Sbjct: 74 RAFSRSDHLALHMKRHF 90
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 109 CDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-K 162
CD C K Y+ L H++ H G + Y CD C +F+ LT H + H G + +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 163 CVLCSKEFSSKSYLTEHMKRH 183
C C + FS +L HMKRH
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 514 CDL--CSKEFSCKRSVTEHMKLHLGIKN---KCDLCSKEFSTKHTLTEHMKLHQGIR-YK 567
CD C K ++ + H++ H G K D C +F+ LT H + H G R ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 568 CDLCTKEFSRKGRLTEHMKLHL 589
C C + FSR L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRHF 90
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 136 CDL--CSKEFSCKRYLTEHMKVHQGMKN---KCVLCSKEFSSKSYLTEHMKRHQGIK-YK 189
CD C K ++ +L H++ H G K C +F+ LT H ++H G + ++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 190 CNLCSKEFSSKSYLTEHMKLH 210
C C + FS +L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 352 CDL--CSKEFSCKRYVTEHMKLHQ-EITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-K 405
CD C K ++ ++ H++ H E Y CD C +++ LT H + H G + +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 406 CVLCSKEFSRKRRLTEHMKLHL 427
C C + FSR L HMK H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRHF 90
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 456 ITYKCNL--CSKEFYRKQNLTKHMKLHQGIKK---KCDLCSKEFSTKCSLTEHMKLHQGI 510
T+ C+ C K + + +L H++ H G K D C +F+ LT H + H G
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 511 KK-KCDLCSKEFSCKRSVTEHMKLHL 535
+ +C C + FS + HMK H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRHF 90
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 541 CDL--CSKEFSTKHTLTEHMKLHQGIR-YKCDL--CTKEFSRKGRLTEHMKLHLG 590
CD C K ++ L H++ H G + Y CD C +F+R LT H + H G
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 274 CSKEFSCKSHLKEHMQVHQG-ITYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCS 329
C K ++ SHLK H++ H G Y CD C +F R LT+H + H G + +C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 330 KEFSSKSYLTEHMKLH 345
+ FS +L HMK H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 436 CSKEFSCKSHLKEHMQVHQG-ITYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCS 491
C K ++ SHLK H++ H G Y C+ C +F R LT+H + H G + +C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 492 KEFSTKCSLTEHMKLH 507
+ FS L HMK H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 211 QEITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHMKLHL 265
+ T+ CD C K Y+ +L HL+ H G K C +F+R LT H + H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 266 GIKN-KCNLCSKEFSCKSHLKEHMQVH 291
G + +C C + FS HL HM+ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 373 QEITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHMKLHL 427
+ T+ CD C K Y+ +L HL+ H G K C +F+R LT H + H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 428 GIKN-KCNLCSKEFSCKSHLKEHMQVH 453
G + +C C + FS HL HM+ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 193 CSKEFSSKSYLTEHMKLHQ-EITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-KCVLCS 248
C K ++ S+L H++ H E Y CD C +++ LT H + H G + +C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 249 KEFSRKRRLTEHMKLHL 265
+ FSR L HMK H
Sbjct: 73 RAFSRSDHLALHMKRHF 89
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 109 CDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-K 162
CD C K Y+ L H++ H G + Y CD C +F+ LT H + H G + +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 163 CVLCSKEFSSKSYLTEHMKRH 183
C C + FS +L HMKRH
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 514 CDL--CSKEFSCKRSVTEHMKLHLGIKN---KCDLCSKEFSTKHTLTEHMKLHQGIR-YK 567
CD C K ++ + H++ H G K D C +F+ LT H + H G R ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 568 CDLCTKEFSRKGRLTEHMKLHL 589
C C + FSR L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 136 CDL--CSKEFSCKRYLTEHMKVHQGMKN---KCVLCSKEFSSKSYLTEHMKRHQGIK-YK 189
CD C K ++ +L H++ H G K C +F+ LT H ++H G + ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 190 CNLCSKEFSSKSYLTEHMKLH 210
C C + FS +L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 352 CDL--CSKEFSCKRYVTEHMKLHQ-EITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-K 405
CD C K ++ ++ H++ H E Y CD C +++ LT H + H G + +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 406 CVLCSKEFSRKRRLTEHMKLHL 427
C C + FSR L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 456 ITYKCNL--CSKEFYRKQNLTKHMKLHQGIKK---KCDLCSKEFSTKCSLTEHMKLHQGI 510
T+ C+ C K + + +L H++ H G K D C +F+ LT H + H G
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 511 KK-KCDLCSKEFSCKRSVTEHMKLHL 535
+ +C C + FS + HMK H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 541 CDL--CSKEFSTKHTLTEHMKLHQGIR-YKCDL--CTKEFSRKGRLTEHMKLHLG 590
CD C K ++ L H++ H G + Y CD C +F+R LT H + H G
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 436 CSKEFSCKSHLKEHMQVHQGITYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDL--CSK 492
C+K F S +++H+ H + C C K F L +H +H G K +C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 493 EFSTKCSLTEHMKLHQGIKK---KCDLCSKEFSCKRSVTEHMKLHLGIKN 539
FS +L H+++H G + D C+K+F+ ++ H+ H KN
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 382 CLKEYSNKIYLTEHLKLHQGIKNKCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNL--CSK 438
C K + + + +HL H + C C K F +L H +H G K +C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 439 EFSCKSHLKEHMQVHQGI-TYKCNL--CSKEFYRKQNLTKHMKLHQGIK 484
FS +L+ H+++H G Y C C+K+F + NL H+ H K
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 274 CSKEFSCKSHLKEHMQVHQGITYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVL--CSK 330
C+K F S +++H+ H + C C K F L +H VH G K +C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 331 EFSSKSYLTEHMKLHQGIKN---KCDLCSKEFSCKRYVTEHMKLH 372
FS L H+++H G + D C+K+F+ + H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKNKCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNL--CSK 465
C+K F + +H+ H + C C K F S LK H VH G ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 466 EFYRKQNLTKHMKLHQGIKK---KCDLCSKEFSTKCSLTEHMKLHQGIK 511
F NL H+++H G + D C+K+F+ +L H+ H K
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKNKCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDL--CSK 303
C+K F + +H+ H + C C K F S LK H VH G ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 304 EFYRKQNLTKHMKVHQGMKN-KCVL--CSKEFSSKSYLTEHMKLHQGIKN 350
F NL H+++H G + C C+K+F+ + L H+ H KN
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 166 CSKEFSSKSYLTEHMKRHQGIKYKCNLCSKEFSSKSYLTEHMKLHQ-EITYKCDL--CLK 222
C+K F S + +H+ H + C C K F S L H +H E ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 223 EYSNKIYLTEHLKLHQGIKN-KCVL--CSKEFSRKRRLTEHMKLHLGIKN 269
+S L H+++H G + C C+K+F++ L H+ H KN
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 139 CSKEFSCKRYLTEHMKVHQGMKNKCVLCSKEFSSKSYLTEHMKRHQGIK-YKCNL--CSK 195
C+K F + +H+ H + C C K F S L H H G K ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 196 EFSSKSYLTEHMKLHQ-EITYKC--DLCLKEYSNKIYLTEHLKLHQGIKN 242
FS L H+++H + Y C D C K+++ L H+ H KN
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 490 CSKEFSTKCSLTEHMKLHQGIKKKCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDL--CSK 546
C+K F ++ +H+ H C C K F + H +H G K +C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 547 EFSTKHTLTEHMKLHQGIR-YKC--DLCTKEFSRKGRLTEHMKLH 588
FS L H+++H G R Y C D C K+F++ L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 355 CSKEFSCKRYVTEHMKLHQEITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVL--CSK 411
C+K F + +H+ H + C C K + L H +H G K +C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 412 EFSRKRRLTEHMKLHLGIKN---KCNLCSKEFSCKSHLKEHMQVH 453
FS L H+++H G + + C+K+F+ ++LK H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 112 CSKEYSYKHTLTEHMKLHQGIRYKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVL--CSK 168
C+K + + +H+ H + C C K F L H VH G K +C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 169 EFSSKSYLTEHMKRHQGIK-YKCNL--CSKEFSSKSYLTEHMKLH 210
FS L H++ H G + Y C C+K+F+ + L H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 328 CSKEFSSKSYLTEHMKLHQGIKNKCDLCSKEFSCKRYVTEHMKLHQ-EITYKCDL--CLK 384
C+K F S + +H+ H + C C K F + H +H E ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 385 EYSNKIYLTEHLKLHQGIKN-KCVL--CSKEFSRKRRLTEHMKLHLGIKN 431
+S L H+++H G + C C+K+F++ L H+ H KN
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKNKCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDL--CTK 573
C+K F ++ +H+ H + C C K F L H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 574 EFSRKGRLTEHMKLHLG 590
FS L H+++H G
Sbjct: 73 RFSLDFNLRTHVRIHTG 89
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 112 CSKEYSYKHTLTEHMKLHQGIR-YKC--DLCSKEFSCKRYLTEHMKVHQGMKN 161
C K +S L H+++H G R Y C D C+K+F+ L H+ H KN
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
KC+ C F K +L H VH G Y+CN+C +F R NL H ++H G K
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 104 DIGYKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
D YKCD C + YK L H +H G + Y+C++C +F+ L H ++H G K
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIK 349
YKCD C F K NL H VH G K +C +C +F+ + L H ++H G K
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK 512
YKC+ C F K NL H +H G K +C++C +F+ +L H ++H G K
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 540 KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
KCD C F K L H +H G + Y+C++C +F+R L H ++H G
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG 293
KC C F K L H +H G K +CN+C +F+ ++LK H ++H G
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK 187
YKCD C F K L H VH G K +C +C +F+ + L H + H G K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 214 TYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIK 268
YKCD C + K L H +H G K +C +C +F+R L H ++H G K
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 376 TYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIK 430
YKCD C + K L H +H G K +C +C +F+R L H ++H G K
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQG 563
KCD C F K ++ H +H G K +C++C +F+ L H ++H G
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 486 KCDLCSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIK 538
KCD C F K +L H +H G K +C++C +F+ ++ H ++H G K
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 162 KCVLCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLH 210
KC C F K L H H G K Y+CN+C +F+ + L H ++H
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 351 KCDLCSKEFSCKRYVTEHMKLH-QEITYKCDLCLKEYSNKIYLTEHLKLHQGIK 403
KCD C F K + H +H E Y+C++C +++ L H ++H G K
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
YKCD C F KG L H +H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTG 42
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 217 CDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKNK---CN 272
C++C K + + +L H H G K C +C F RK R++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 273 LCSKEFSCKSHLKEHM-QVHQGIT 295
C K FS HL H+ QVH G +
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 379 CDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLGIKNK---CN 434
C++C K + + +L H H G K C +C F RK R++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 435 LCSKEFSCKSHLKEHM-QVHQGIT 457
C K FS HL H+ QVH G +
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKEFYRKQNLTKHMKVHQGMKNK---CV 326
C +C K F HL H H G Y C +C F RK ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 327 LCSKEFSSKSYLTEHMK-LHQG 347
C K FS +L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 433 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLTKHMKLHQGIKKK---CD 488
C +C K F HL H H G Y C +C F RK ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 489 LCSKEFSTKCSLTEHMK-LHQG 509
C K FS L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 136 CDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGI---KYKCN 191
C++C K F +L H H G K C +C F K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 192 LCSKEFSSKSYLTEHMK 208
C K FS +L H+K
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 106 GYKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKNK-- 162
G C++C K + + L H H G + Y C +C F K ++ H++ H G K
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 163 -CVLCSKEFSSKSYLTEHMKR 182
C C K FS +L H+K+
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQ 87
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 190 CNLCSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKNK---CV 245
C +C K F +L H H E Y C +C + K ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 246 LCSKEFSRKRRLTEHMK-LHLG 266
C K FSR L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 163 CVLCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLHQEIT---YKCD 218
C +C K F +L H H G K Y C +C F K ++ H++ H Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 219 LCLKEYSNKIYLTEHLK-LHQG 239
C K +S +L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 298 CDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKNK---CD 353
C++C K F +L +H H G K C +C F K ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 354 LCSKEFSCKRYVTEHMK 370
C K FS ++ H+K
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 352 CDLCSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKNK---CV 407
C++C K F ++ H H E Y C +C + K ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 408 LCSKEFSRKRRLTEHMK-LHLG 428
C K FSR L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 514 CDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGI---RYKCD 569
C++C K F + H H G K C +C F K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 570 LCTKEFSRKGRLTEHMK-LHLG 590
C K FSR L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 460 CNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKKK---CD 515
C +C K F +L +H H G K C +C F K ++ H++ H G K C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 516 LCSKEFSCKRSVTEHMK-LHLG 536
C K FS + H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQG 158
YKCD C K +S+ L++H + H G + YKCD C K F + +L H +VH G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQG 347
YKCD C K F +L+KH + H G K KC C K F +S+L H ++H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLH-QEITYKCDLCLKEYSNKIYLTEHLKLHQG 239
+YKC+ C K FS S L++H + H E YKCD C K + + +L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQG 509
YKC+ C K F +L+KH + H G K KCD C K F + L H ++H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 133 RYKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQG 185
RYKCD C K FS L++H + H G K KC C K F +S+L H + H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 540 KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLHLG 590
KCD C K FS L++H + H G + YKCD C K F ++ L H ++H G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 162 KCVLCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLH 210
KC C K FS S L++H + H G K YKC+ C K F +S+L H ++H
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG 293
KC C K FS L++H + H G K KC+ C K F +SHL H +VH G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 405 KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVHQG 455
KC C K FS L++H + H G K KC+ C K F +SHL H +VH G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 486 KCDLCSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLG 536
KCD C K FS L++H + H G K KCD C K F + + H ++H G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQG 563
KCD C K FS +++H + H G K KCD C K F + L H ++H G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 215 YKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLG 266
YKCD C K +S+ L++H + H G K KC C K F ++ L H ++H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 377 YKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLHLG 428
YKCD C K +S+ L++H + H G K KC C K F ++ L H ++H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 351 KCDLCSKEFSCKRYVTEHMKLH-QEITYKCDLCLKEYSNKIYLTEHLKLHQG 401
KCD C K FS +++H + H E YKCD C K + + +L H ++H G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 324 KCVLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMKLH 372
KC C K FS S L++H + H G K KCD C K F + ++ H ++H
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 565 RYKCDLCTKEFSRKGRLTEHMKLHLG 590
RYKCD C K FS L++H + H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTG 43
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLH 345
Y C C K F R L +H +VH G K KC+ C K FS S L H ++H
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 163 CVLCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLH 210
CV C K FS S L +H + H G K YKC C K FS S L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRH 183
Y C C K FS L +H +VH G K KC+ C K FS S L H + H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 244 CVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVH 291
CV C K FSR L +H ++H G K KC C K FS S L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 406 CVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVH 453
CV C K FSR L +H ++H G K KC C K FS S L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLH 507
Y C C K F R L +H ++H G K KC C K FS L H ++H
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 212 EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLH 264
E Y C C K +S L +H ++H G K KC+ C K FS+ L H ++H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 374 EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLH 426
E Y C C K +S L +H ++H G K KC+ C K FS+ L H ++H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 541 CDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLH 588
C C K FS L +H ++H G + YKC C K FS+ L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVH 156
Y C C K +S L +H ++H G + YKC C K FS L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 325 CVLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMKLH 372
CV C K FS S L +H ++H G K KC C K FS + H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKEFYRKQNLTKHMKVH 318
C C K FS S L +H +VH G YKC C K F + L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 433 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLTKHMKLH 480
C C K FS S L +H +VH G YKC C K F + L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 487 CDLCSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLH 534
C C K FS L +H ++H G K KC C K FS + H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 514 CDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLH 561
C C K FS + +H ++H G K KC C K FS L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 295 TYKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLH 345
Y C + C + F R LT+H+++H G K +C +C + FS +LT H++ H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 544 CSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLH 588
C + FS LT H+++H G + ++C +C + FSR LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVH 291
C + FSR LT H+++H G K +C +C + FS HL H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 409 CSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVH 453
C + FSR LT H+++H G K +C +C + FS HL H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 457 TYKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLH 507
Y C + C + F R LT+H+++H G K +C +C + FS LT H++ H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 166 CSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLH 210
C + FS LT H++ H G K ++C +C + FS +LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 134 YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRH 183
Y C + C + FS LT H+++H G K +C +C + FS +LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 364 YVTEHMKLHQEITYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLT 420
YV M+ Y C + C + +S LT H+++H G K +C +C + FSR LT
Sbjct: 12 YVVPKMR-----PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 421 EHMKLH 426
H++ H
Sbjct: 67 THIRTH 72
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 187 KYKCNL--CSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLH 237
Y C + C + FS LT H+++H + ++C +C++ +S +LT H++ H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 106 GYKCDL--CSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVH 156
Y C + C + +S LT H+++H G + ++C +C + FS +LT H++ H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 214 TYKCDL--CLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLH 264
Y C + C + +S LT H+++H G K +C +C + FSR LT H++ H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 274 CSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKEFYRKQNLTKHMKVH 318
C + FS L H+++H G ++C +C + F R +LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 436 CSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMKLH 480
C + FS L H+++H G ++C +C + F R +LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 328 CSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMKLH 372
C + FS LT H+++H G K +C +C + FS ++T H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 490 CSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLH 534
C + FS LT H+++H G K +C +C + FS +T H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 517 CSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLH 561
C + FS +T H+++H G K +C +C + FS LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 355 CSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLH 399
C + FS +T H+++H + ++C +C++ +S +LT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 14/142 (9%)
Query: 112 CSKEYSYKHTLTEHMKLHQGIR-YKC--DLCSKEFSCKRYLTEHMKVHQGMKN---KCVL 165
C Y+ L H+ H G + + C + C K F+ +LT H H G KN
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 166 CSKEFSSKSYLTEHMKRHQGIK---YKCNL--CSKEFSSKSYLTEHMKLH-QEITYKC-- 217
C F++K+ + +H R IK Y C+ C K F + L H H Q++ Y+C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 218 DLCLKEYSNKIYLTEHLKLHQG 239
+ C K +S L H K+H G
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAG 161
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 63/152 (41%), Gaps = 15/152 (9%)
Query: 382 CLKEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHMKLHLGIKN---KCNL 435
C Y+ L HL H G K K C K F+ LT H H G KN +
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 436 CSKEFSCKSHLKEHMQVHQGI---TYKCNL--CSKEFYRKQNLTKHMKLH-QGIKKKC-- 487
C F+ K+++K+H I Y C+ C K F + L H H Q + +C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 488 DLCSKEFSTKCSLTEHMKLHQGIK-KKCDLCS 518
+ C K FS L H K+H G KK D CS
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 171
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 62/156 (39%), Gaps = 19/156 (12%)
Query: 220 CLKEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHMKLHLGIKN---KCNL 273
C Y+ L HL H G K K C K F+ LT H H G KN +
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 274 CSKEFSCKSHLKEHMQVHQGI---TYKCDL--CSKEFYRKQNLTKHMKVH-QGMKNKCV- 326
C F+ K+++K+H I Y C C K F + L H H Q + +C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 327 -LCSKEFSSKSYLTEHMKLHQGIKNKCDLCSKEFSC 361
C K FS S L H K+H G C K+ SC
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYP-----CKKDDSC 170
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 166 CSKEFSSKSYLTEHMKRHQGIK-YKC--NLCSKEFSSKSYLTEHMKLH---QEITYKCDL 219
C ++ L H+ +H G K + C C K F+S +LT H H + T D
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 220 CLKEYSNKIYLTEHLKLHQGIKNKCVL------CSKEFSRKRRLTEHMKLH---LGIKNK 270
C ++ K + +H IK CV C K F + +L H H L +
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIK-ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 271 CNLCSKEFSCKSHLKEHMQVHQGITYKC---DLCS 302
C K FS S LK H +VH G Y C D CS
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 58/142 (40%), Gaps = 14/142 (9%)
Query: 463 CSKEFYRKQNLTKHMKLHQGIKK---KCDLCSKEFSTKCSLTEHMKLHQGIKK---KCDL 516
C + + L H+ H G K K + C K F++ LT H H G K D
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 517 CSKEFSCKRSVTEHMKLHLGIK---NKCDL--CSKEFSTKHTLTEHMKLH-QGIRYKC-- 568
C F+ K ++ +H IK C C K F + L H H Q + Y+C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 569 DLCTKEFSRKGRLTEHMKLHLG 590
+ C K FS RL H K+H G
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAG 161
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 63/167 (37%), Gaps = 29/167 (17%)
Query: 301 CSKEFYRKQNLTKHMKVHQGMKN---KCVLCSKEFSSKSYLTEHMKLHQGIKN---KCDL 354
C + + L H+ H G K K C K F+S +LT H H G KN D
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 355 CSKEFSCKRYVTEHMKLHQEITYKCDLCLKEYSNKIYLT-EHLKLHQGIKNKCVLCSKEF 413
C F+ K + +H I +C E K + LK+HQ F
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ------------F 127
Query: 414 SRKRRLTEHMKLHLGIKNKCNLCSKEFSCKSHLKEHMQVHQGITYKC 460
S ++L H G C K FS S LK H +VH G Y C
Sbjct: 128 SHTQQLPYECP-HEG-------CDKRFSLPSRLKRHEKVHAG--YPC 164
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 436 CSKEFSCKSHLKEHMQVHQG-ITYKC--NLCSKEFYRKQNLTKHMKLHQGIKK---KCDL 489
C ++ L+ H+ H G + C C K F +LT+H H G K D
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 490 CSKEFSTKCSLTEHMKLHQGIKKKCDLCSKEFSCKRSVTEH--MKLH-------LGIKNK 540
C F+TK ++ +H IK +C E +C ++ +H +K+H L +
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFE-NCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 541 CDLCSKEFSTKHTLTEHMKLHQGIRYKC 568
+ C K FS L H K+H G Y C
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAG--YPC 164
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 132 IRYKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQG-IKYK 189
+ Y C +C + + C L H +H K C C K F Y T+H H G +Y+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 190 CNLCSKEFSSKSYLTEHMK 208
C C K F + +++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLC 328
C +C + + C + L+ H +H Y C C K F + TKH H G + +C+ C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 329 SKEFSSKSYLTEHMK 343
K F + +++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 105 IGYKCDLCSKEYSYKHTLTEHMKLHQG-IRYKCDLCSKEFSCKRYLTEHMKVHQGMKN-K 162
+ Y C +C + Y +L H +H +Y C C K F Y T+H H G + +
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 163 CVLCSKEFSSKSYLTEHMK 181
C+ C K F + +++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 433 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLC 490
C +C + + C + L+ H +H Y C C K F + TKH H G ++ +C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 491 SKEFSTKCSLTEHMK 505
K F ++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 163 CVLCSKEFSSKSYLTEHMKRHQG-IKYKCNLCSKEFSSKSYLTEHMKLHQ-EITYKCDLC 220
C++C + + + L H H KY C C K F Y T+H H E Y+C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 221 LKEYSNKIYLTEHLK 235
K + N +++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 325 CVLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMKLHQ-EITYKCDLC 382
C++C + + + L H +H K C C K F Y T+H H E Y+C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 383 LKEYSNKIYLTEHLK 397
K + N +++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 514 CDLCSKEFSCKRSVTEHMKLH-LGIKNKCDLCSKEFSTKHTLTEHMKLHQG-IRYKCDLC 571
C +C + + C S+ H +H K C C K F T+H H G RY+C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 572 TKEFSRKGRLTEHMK 586
K F ++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 294 ITYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN-K 351
+ Y C +C + + +L +H +H K C C K F Y T+H H G + +
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 352 CDLCSKEFSCKRYVTEHMK 370
C C K F ++++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 186 IKYKCNLCSKEFSSKSYLTEHMKLH-QEITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-K 243
+ Y C +C + + + L H +H E Y C C K + Y T+H H G + +
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 244 CVLCSKEFSRKRRLTEHMK 262
C+ C K F + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 352 CDLCSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLC 409
C +C + + C + H +H E Y C C K + Y T+H H G + +C+ C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 410 SKEFSRKRRLTEHMK 424
K F + ++ H+K
Sbjct: 85 GKSFINYQFMSSHIK 99
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 456 ITYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK-K 513
+ Y C +C + + +L +H +H KK C C K F T+H H G ++ +
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 514 CDLCSKEFSCKRSVTEHMK 532
C C K F + ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 247 CSKEFSRKRRLTEHMKL-HLGIKNKCN-LC--------SKEFSCKSHLKEHMQVHQG-IT 295
C + FS L H+ + H+G + N +C K F K L H++VH G
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 296 YKCDL--CSKEFYRKQNLTKHMKVHQGMKN-KCVL--CSKEFSSKSYLTEHMKLHQGIKN 350
+ C C K F R +NL H + H G K KC C + F++ S +HM +H K+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 16/115 (13%)
Query: 409 CSKEFSRKRRLTEHMKL-HLGIKNKCN-LC--------SKEFSCKSHLKEHMQVHQG-IT 457
C + FS L H+ + H+G + N +C K F K L H++VH G
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 458 YKCNL--CSKEFYRKQNLTKHMKLHQGIKK-KCDL--CSKEFSTKCSLTEHMKLH 507
+ C C K F R +NL H + H G K KC+ C + F+ +HM +H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNL--CSKEFSCKSHLKEHMQVHQG-ITYKC 298
+C K F K +L H+++H G K C C K F+ +LK H + H G +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 299 DL--CSKEFYRKQNLTKHMKVH 318
+ C + F + KHM VH
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 112 CSKEYSYKHTLTEHMKL-HQGIRYK---------CDLCSKEFSCKRYLTEHMKVHQGMKN 161
C + +S H L H+ + H G + C K F K L H++VH G K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 162 -KCVL--CSKEFSSKSYLTEHMKRHQGIK-YKCNL--CSKEFSSKSYLTEHMKLH 210
C C K F+ L H + H G K +KC C + F++ S +HM +H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 405 KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNL--CSKEFSCKSHLKEHMQVHQG-ITYKC 460
+C K F K +L H+++H G K C C K F+ +LK H + H G +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 461 NL--CSKEFYRKQNLTKHMKLH 480
C + F + KHM +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 108 KCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDL--CSKEFSCKRYLTEHMKVHQGMKN-KC 163
+C K + K+ L H+++H G + + C C K F+ L H + H G K KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 164 VL--CSKEFSSKSYLTEHMKRH 183
C + F++ S +HM H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 517 CSKEFSCKRSVTEHMKL-HLGIKNK---------CDLCSKEFSTKHTLTEHMKLHQGIR- 565
C + FS + H+ + H+G + C K F K+ L H+++H G +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 566 YKCDL--CTKEFSRKGRLTEHMKLHLG 590
+ C C K F+R L H + H G
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTG 117
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 188 YKCNLCSKEFSSKSYLTEHMKLH-QEITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCV 245
+ C C + F+ L H + H E Y CD+C K + + +L +H +H K KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 246 LCSKEFSRKRRLTEHMKLHL 265
C K F + R L H LH+
Sbjct: 78 ECGKGFCQSRTLAVHKTLHM 97
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 406 CVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQVH-QGITYKCNLC 463
C C + F++ L H + H + C++C K F + HL++H +H + +KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 464 SKEFYRKQNLTKHMKLH 480
K F + + L H LH
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLHQGIKK-KCD 515
+ C C + F + NL H + H + CD+C K F + L +H +H K KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 516 LCSKEFSCKRSVTEHMKLHL 535
C K F R++ H LH+
Sbjct: 78 ECGKGFCQSRTLAVHKTLHM 97
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLC 328
C C + F+ +L H + H Y CD+C K F R+ +L H +H K KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 329 SKEFSSKSYLTEHMKLH 345
K F L H LH
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 352 CDLCSKEFSCKRYVTEHMKLH-QEITYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLC 409
C C + F+ + H + H E Y CD+C K + + +L +H +H K KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 410 SKEFSRKRRLTEHMKLHL 427
K F + R L H LH+
Sbjct: 80 GKGFCQSRTLAVHKTLHM 97
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKLHQGIKN-KCD 353
+ C C + F + NL H + H + C +C K F + +L +H +H K KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 354 LCSKEFSCKRYVTEHMKLHQEIT 376
C K F R + H LH + +
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTS 100
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 163 CVLCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLH-QEITYKCDLC 220
C C + F+ L H + H + Y C++C K F + +L +H +H +E +KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 221 LKEYSNKIYLTEHLKLH 237
K + L H LH
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCV 164
+ C C + ++ + L H + H R Y CD+C K F + +L +H +H K KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 165 LCSKEFSSKSYLTEHMKRH 183
C K F L H H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 541 CDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLH 588
C C + F+ + L H + H R Y CD+C K F R+ L +H +H
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 487 CDLCSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLC 544
C C + F+ +L H + H + CD+C K F + + +H +H K KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 545 SKEFSTKHTLTEHMKLH 561
K F TL H LH
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 514 CDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLC 571
C C + F+ ++ H + H + CD+C K F + L +H +H + +KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 572 TKEFSRKGRLTEHMKLHL 589
K F + L H LH+
Sbjct: 80 GKGFCQSRTLAVHKTLHM 97
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIK-YKCN 191
+ C C + F+ L H + H + C +C K F + +L +H H K +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 192 LCSKEFSSKSYLTEHMKLHQEIT 214
C K F L H LH + +
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTS 100
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKEFYRKQNLTKHM-KVHQG 320
C +C++ F+ + HLK H + H Y C LC++ F R+ L +H K+H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 433 CNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLTKHM-KLHQG 482
C +C++ F+ + HLK H + H Y C LC++ F R+ L +H K+H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFSSKSYLTEHM-KLHQG 347
++ C++C++ F R+++L +H + H K C LC++ F+ + L H K+H G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 541 CDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHM-KLHLG 590
C++C++ F+ + L H + H + Y C LC + F+R+ L H K+H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 163 CVLCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMK 208
C +C++ F+ + +L H + H K Y C LC++ F+ + L H +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHM-KVHQG 158
+ C++C++ ++ + L H + H + Y C LC++ F+ + L H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKR-HQG 185
+ C++C++ F+ + +L H + H K C LC++ F+ + L H ++ H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 352 CDLCSKEFSCKRYVTEHMKLH-QEITYKCDLCLKEYSNKIYLTEHL-KLHQG 401
C++C++ F+ + ++ H + H E Y C LC + ++ + L H K+H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 244 CVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQ-VHQG 293
C +C++ F+R+ L H + H K C LC++ F+ + L H Q +H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 406 CVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQ-VHQG 455
C +C++ F+R+ L H + H K C LC++ F+ + L H Q +H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 514 CDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFSTKHTLTEHM-KLHQG 563
C++C++ F+ + + H + H K C LC++ F+ + L H K+H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKKK-CDLCSKEFSTKCSLTEHMKLHQ 508
+ CN C K + L++H + H G + + C C K F + + H+K+HQ
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMKNK-CVLCSKEFSSKSYLTEHMKLHQ 346
+ C+ C K + L++H + H G + + C C K F +S + H+K+HQ
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQGITYK-CDLCSKEFYRKQNLTKHMKVHQ 319
CN C K + S L H + H G + C C K F + + +H+KVHQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIRYK-CDLCSKEFSCKRYLTEHMKVHQ 157
+ C+ C K Y L+ H + H G R + C C K F + + H+KVHQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 514 CDLCSKEFSCKRSVTEHMKLHLGIKNK-CDLCSKEFSTKHTLTEHMKLHQ 562
C+ C K + ++ H + HLG + + C C K F + + H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 163 CVLCSKEFSSKSYLTEHMKRHQGIKYK-CNLCSKEFSSKSYLTEHMKLHQ 211
C C K + S L+ H + H G + + C C K F +S + H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 244 CVLCSKEFSRKRRLTEHMKLHLGIKNK-CNLCSKEFSCKSHLKEHMQVHQ 292
C C K + L+ H + HLG + + C C K F +S + H++VHQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 406 CVLCSKEFSRKRRLTEHMKLHLGIKNK-CNLCSKEFSCKSHLKEHMQVHQ 454
C C K + L+ H + HLG + + C C K F +S + H++VHQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 433 CNLCSKEFSCKSHLKEHMQVHQGITYK-CNLCSKEFYRKQNLTKHMKLHQ 481
CN C K + S L H + H G + C C K F + + +H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 325 CVLCSKEFSSKSYLTEHMKLHQGIKNK-CDLCSKEFSCKRYVTEHMKLHQ 373
C C K + S L+ H + H G + + C C K F + V H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 212 EITYKCDLCLKEYSNKIYLTEHLKLHQGIKNK-CVLCSKEFSRKRRLTEHMKLH 264
E + C+ C K Y + L+ H + H G + + C C K F + + H+K+H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 374 EITYKCDLCLKEYSNKIYLTEHLKLHQGIKNK-CVLCSKEFSRKRRLTEHMKLH 426
E + C+ C K Y + L+ H + H G + + C C K F + + H+K+H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 487 CDLCSKEFSTKCSLTEHMKLHQGIKKK-CDLCSKEFSCKRSVTEHMKLH 534
C+ C K + L+ H + H G + + C C K F + V H+K+H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLHQEITYK---CDLCLKEYSNKIYLTEHLKLHQ 238
+ CN C K + S L+ H + H + Y+ C C K + ++ + HLK+HQ
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAH--LGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMKNK-CVLCSKEFSSKSYLTEHMKRHQ 184
+ C+ C K + L+ H + H G + + C C K F +S + H+K HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 541 CDLCSKEFSTKHTLTEHMKLHQGIRYK-CDLCTKEFSRKGRLTEHMKLH 588
C+ C K + L+ H + H G R + C C K F + + H+K+H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFS 495
++C +C + F R +LT H++ H G K CD+C ++F+
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRHQGIKYKCNL 192
++C +C + FS +LT H++ H G K C +C ++F+ ++ KRH+ I++ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR----SDERKRHRDIQHILPI 59
Query: 193 CS---KEFSSKSY 202
+E SK+Y
Sbjct: 60 LEDKVEELLSKNY 72
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLTKHMKL 479
+C +C + FS HL H++ H G + C++C ++F R +H +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 540 KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSR 577
+C +C + FS LT H++ H G + + CD+C ++F+R
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQV 290
+C +C + FSR LT H++ H G K C++C ++F+ K H +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 405 KCVLCSKEFSRKRRLTEHMKLHLGIKN-KCNLCSKEFSCKSHLKEHMQV 452
+C +C + FSR LT H++ H G K C++C ++F+ K H +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 214 TYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSR 253
++C +C++ +S +LT H++ H G K C +C ++F+R
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 376 TYKCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSR 415
++C +C++ +S +LT H++ H G K C +C ++F+R
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 188 YKCNLCSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYS 225
++C +C + FS +LT H++ H E + CD+C ++++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFS 144
++C +C + +S LT H++ H G + + CD+C ++F+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMKN-KCVLCSKEFS 333
++C +C + F R +LT H++ H G K C +C ++F+
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLGIKN-KCDLCSKEFS 549
+C +C + FS +T H++ H G K CD+C ++F+
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
++C +C + FSR LT H++ H G
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 19/143 (13%)
Query: 409 CSKEFSRKRRLTEHMKL-HLGIKNK-----CNLCSKE---FSCKSHLKEHMQVHQGI-TY 458
CS+EF + +L H+ H+ + K CS+E F + L HM+ H G +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 459 KCNL--CSKEFYRKQNLTKHMKLHQGIKK---KCDLCSKEFSTKCSLTEHM-KLHQGIKK 512
KC C K + R +NL H++ H G K + + CSK FS +H + H K
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 513 ---KCDLCSKEFSCKRSVTEHMK 532
K C+K ++ S+ +H+K
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVK 151
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 71/171 (41%), Gaps = 40/171 (23%)
Query: 247 CSKEFSRKRRLTEHMKL-HLGIKNK-----CNLCSKE---FSCKSHLKEHMQVHQGI-TY 296
CS+EF + +L H+ H+ + K CS+E F + L HM+ H G +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 297 KCDL--CSKEFYRKQNLTKHMKVHQGMKNKCVLCSKEFSSKSYLTEHMKLHQGIKNKCDL 354
KC C K + R +NL H++ H G K Y+ EH +
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTG-------------EKPYMCEH-----------EG 104
Query: 355 CSKEFSCKRYVTEHM-KLH-QEITYKCDL--CLKEYSNKIYLTEHLKLHQG 401
CSK FS +H + H E Y C L C K Y++ L +H+K G
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 166 CSKEFSSKSYLTEHMKRH----QGIKYKCNL--CSKE---FSSKSYLTEHMKLHQ-EITY 215
CS+EF S+ L H+ + ++ C+ CS+E F ++ L HM+ H E +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 216 KCDL--CLKEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHM-KLHLGIKN 269
KC C K YS L HL+ H G K + CSK FS +H + H K
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 270 ---KCNLCSKEFSCKSHLKEHMQVHQG 293
K C+K ++ S L++H++ G
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 328 CSKEFSSKSYLTEHMK---LHQGIKN---KCDLCSKE---FSCKRYVTEHMKLHQ-EITY 377
CS+EF S+ L H+ +H K CS+E F + + HM+ H E +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 378 KCDL--CLKEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHM-KLHLGIKN 431
KC C K YS L HL+ H G K + CSK FS +H + H K
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 432 ---KCNLCSKEFSCKSHLKEHMQVHQG 455
K C+K ++ S L++H++ G
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 513 KCDLCSKEFSCKRSVTEHMKL-HLGIKNK-----CDLCSKE---FSTKHTLTEHMKLHQG 563
+ D CS+EF + + H+ H+ + K CS+E F ++ L HM+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 564 IR-YKCDL--CTKEFSRKGRLTEHMKLHLG 590
+ +KC C K +SR L H++ H G
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 565 RYKCDLCTKEFSRKGRLTEHMKLHLG 590
RYKC+ C K FSR +L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIK 484
YKCN C K F R L++H K+H G K
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 133 RYKCDLCSKEFSCKRYLTEHMKVHQGMK 160
RYKC+ C K FS L++H K+H G K
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLH 210
+YKCN C K FS S L++H K+H
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIH 35
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMK 322
YKC+ C K F R L++H K+H G K
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIK 268
KC C K FSR +L++H K+H G K
Sbjct: 14 KCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 405 KCVLCSKEFSRKRRLTEHMKLHLGIK 430
KC C K FSR +L++H K+H G K
Sbjct: 14 KCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLH 210
Y CN C K+FSSKSYL H ++H
Sbjct: 10 PYGCNECGKDFSSKSYLIVHQRIH 33
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
Y C+ C K+FS K YL H ++H G K
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 325 CVLCSKEFSSKSYLTEHMKLHQGIK 349
C C K+FSSKSYL H ++H G K
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 212 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 241
E Y C+ C K++S+K YL H ++H G K
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 374 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 403
E Y C+ C K++S+K YL H ++H G K
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQG 293
CN C K+FS KS+L H ++H G
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTG 35
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 433 CNLCSKEFSCKSHLKEHMQVHQG 455
CN C K+FS KS+L H ++H G
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTG 35
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
Y+CD C K FS+KG L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQG 320
Y+CD C K F +K +L H++VH G
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQG 158
Y+CD C K FS K L H++VH G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQG 131
Y+CD C K +S K +L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 486 KCDLCSKEFSTKCSLTEHMKLHQG 509
+CD C K FS K SL H+++H G
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 540 KCDLCSKEFSTKHTLTEHMKLHQG 563
+CD C K FS K +L H+++H G
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 212 EITYKCDLCLKEYSNKIYLTEHLKLHQG 239
E Y+CD C K +S K L H+++H G
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 374 EITYKCDLCLKEYSNKIYLTEHLKLHQG 401
E Y+CD C K +S K L H+++H G
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQG 482
Y+C+ C K F +K +L H+++H G
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
YKCD+C KEFS +L H +VH G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMK 322
YKCD+C KEF + +L H +VH G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
YKCD+C KEFS+ L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 270 KCNLCSKEFSCKSHLKEHMQVHQG 293
KC++C KEFS SHL+ H +VH G
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQG 455
KC++C KEFS SHL+ H +VH G
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 188 YKCNLCSKEFSSKSYLTEHMKLH 210
YKC++C KEFS S+L H ++H
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVH 35
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 215 YKCDLCLKEYSNKIYLTEHLKLHQGIK 241
YKCD+C KE+S +L H ++H G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 377 YKCDLCLKEYSNKIYLTEHLKLHQGIK 403
YKCD+C KE+S +L H ++H G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
YKC++C KEF + +L H ++H G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQG 131
YKCD+C KE+S L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 486 KCDLCSKEFSTKCSLTEHMKLHQGIKK 512
KCD+C KEFS L H ++H G K
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 324 KCVLCSKEFSSKSYLTEHMKLHQGIK 349
KC +C KEFS S+L H ++H G K
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 540 KCDLCSKEFSTKHTLTEHMKLHQG 563
KCD+C KEFS L H ++H G
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTG 37
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVH-QGMKN 161
+KC+ C K FSC +YLT+H ++H +G+K+
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHTRGVKS 41
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 351 KCDLCSKEFSCKRYVTEHMKLH 372
KC+ C K FSC +Y+T+H ++H
Sbjct: 14 KCNKCEKTFSCSKYLTQHERIH 35
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 188 YKCNLCSKEFSSKSYLTEHMKLH 210
+KCN C K FS YLT+H ++H
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIH 35
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 162 KCVLCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMKLH 210
+C C K F S YL H++ H G K YKC C + K+ L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 135 KCDLCSKEFSCKRYLTEHMKVHQGMKN-KCVLCSKEFSSKSYLTEHMKRH 183
+C C K F YL H++ H G K KC C + K+ L H++RH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 189 KCNLCSKEFSSKSYLTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLH 237
+C+ C K F S YL H++ H E YKC+ C + K L HL+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 540 KCDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMKLH 588
+C C K F + + L H++ H G + YKC+ C ++K L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 270 KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDLCSKEFYRKQNLTKHMKVH 318
+C+ C K F +L H++ H G YKC+ C +K +L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 351 KCDLCSKEFSCKRYVTEHMKLHQ-EITYKCDLCLKEYSNKIYLTEHLKLH 399
+C C K F Y+ H++ H E YKC+ C + K L HL+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 459 KCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMKLH 507
+C+ C K F L H++ H G K KC+ C + K SL H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 485 KKCDLCSKEFSTKCSLTEHMKLHQGIKK-KCDLCSKEFSCKRSVTEHMKLH 534
++C C K F + L H++ H G K KC+ C + K S+ H++ H
Sbjct: 5 RECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNLCSKEFYRKQNLTKHMKLH 480
+C+ C K F +L H++ H G YKC C +K +L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 324 KCVLCSKEFSSKSYLTEHMKLHQGIKN-KCDLCSKEFSCKRYVTEHMKLH 372
+C C K F S YL H++ H G K KC+ C + K + H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 216 KCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLH 264
+C C K + + YL HL+ H G K KC C ++K L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 378 KCDLCLKEYSNKIYLTEHLKLHQGIKN-KCVLCSKEFSRKRRLTEHMKLH 426
+C C K + + YL HL+ H G K KC C ++K L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 270 KCNLCSKEFS-----CKSHLKEHMQVHQGITYKCDLCSKEFYRKQNLTKHMKV 317
+C +CS+ ++ C+ ++ H + Y C C KEF RK N+T H+K+
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 432 KCNLCSKEFS-----CKSHLKEHMQVHQGITYKCNLCSKEFYRKQNLTKHMKL 479
+C +CS+ ++ C+ ++ H + Y C C KEF RK N+T H+K+
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 188 YKCNLCSKEFSSKS-----YLTEHMKLHQEITYKCDLCLKEYSNKIYLTEHLKL 236
Y+C +CS+ ++ S Y+T H + Y C C KE++ K +T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 540 KCDLCSKEFS-----TKHTLTEHMKLHQGIRYKCDLCTKEFSRKGRLTEHMKL 587
+C +CS+ ++ +H +T H + Y C C KEF+RK +T H+K+
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMKNK---CVLCSKEFSSKSYLTEHMKL 344
TY+C +CS+ + N +H K C C KEF+ K +T H+K+
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 107 YKCDLCSKEYSY-----KHTLTEHMKLHQGIRYKCDLCSKEFSCKRYLTEHMKV 155
Y+C +CS+ Y++ +H +T H + Y C C KEF+ K +T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 13/60 (21%)
Query: 212 EITYKCDLCLKEYSN-----KIYLTEH---LKLHQGIKNKCVLCSKEFSRKRRLTEHMKL 263
E TY+C +C + Y++ + Y+T H +K++ C C KEF+RK +T H+K+
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP-----CPFCFKEFTRKDNMTAHVKI 62
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 13/60 (21%)
Query: 374 EITYKCDLCLKEYSN-----KIYLTEH---LKLHQGIKNKCVLCSKEFSRKRRLTEHMKL 425
E TY+C +C + Y++ + Y+T H +K++ C C KEF+RK +T H+K+
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP-----CPFCFKEFTRKDNMTAHVKI 62
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKKK---CDLCSKEFSTKCSLTEHMKL 506
TY+C +CS+ + N +H K C C KEF+ K ++T H+K+
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 162 KCVLCSKEFSSKS-----YLTEHMKRHQGIKYKCNLCSKEFSSKSYLTEHMKLHQEI 213
+C +CS+ ++ S Y+T H KR+ + Y C C KEF+ K +T H+K+ +I
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSH-KRNVKV-YPCPFCFKEFTRKDNMTAHVKIIHKI 66
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 158 GMKNKCVLCSKEFSSKSYLTEHMKRHQGI---KYKCN--LCSKEFSSKSYLTEHMKLHQE 212
GM C + FS++ YL H K++Q I + C C K F+ K +L EHMKLH +
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHH-KKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 213 I-TYKCDL 219
Y C+
Sbjct: 66 TRDYICEF 73
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 320 GMKNKCVLCSKEFSSKSYLTEHMKLHQGIKNKC-----DLCSKEFSCKRYVTEHMKLHQE 374
GM C + FS++ YL H K +Q I K C K F+ K+++ EHMKLH +
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKK-YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 375 I-TYKCDL 381
Y C+
Sbjct: 66 TRDYICEF 73
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 106 GYKCDL--CSKEYSYKHTLTEHMK---LHQGIRYKCD--LCSKEFSCKRYLTEHMKVHQG 158
G CD C + +S + L H K +HQ + C C K F+ K++L EHMK+H
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 159 MKNKCVLCSKEFSSKS 174
++ +C EFS S
Sbjct: 66 TRD--YIC--EFSGPS 77
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 193 CSKEFSSKSYLTEHMK---LHQEITYKCD--LCLKEYSNKIYLTEHLKLHQGIKN 242
C + FS++ YL H K +HQ+ ++ C C K ++ K +L EH+KLH ++
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQK-SFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 351 KCDL--CSKEFSCKRYVTEHMK---LHQEITYKCD--LCLKEYSNKIYLTEHLKLHQGIK 403
CD C + FS ++Y+ H K +HQ+ ++ C C K ++ K +L EH+KLH +
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQK-SFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 404 N 404
+
Sbjct: 68 D 68
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 25/78 (32%)
Query: 216 KCDL--CLKEYSNKIYLTEHLKLHQGIKNKCVLCSKEFSRKRRLTEHMKLHLGIKNKCNL 273
CD C + +SN+ YL H K +Q I K C +
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKK-YQHIHQKSFSCPEP----------------------A 45
Query: 274 CSKEFSCKSHLKEHMQVH 291
C K F+ K HLKEHM++H
Sbjct: 46 CGKSFNFKKHLKEHMKLH 63
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 25/78 (32%)
Query: 378 KCDL--CLKEYSNKIYLTEHLKLHQGIKNKCVLCSKEFSRKRRLTEHMKLHLGIKNKCNL 435
CD C + +SN+ YL H K +Q I K C +
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKK-YQHIHQKSFSCPEP----------------------A 45
Query: 436 CSKEFSCKSHLKEHMQVH 453
C K F+ K HLKEHM++H
Sbjct: 46 CGKSFNFKKHLKEHMKLH 63
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y+CD+C K F +LT+H +VH G K
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
Y+CD+C K FS LT+H +VH G K
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
Y+CD+C K FS LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQG 131
Y+CD+C K +S+ +LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 212 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 241
E Y+CD+C K +S+ LT+H ++H G K
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 374 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 403
E Y+CD+C K +S+ LT+H ++H G K
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 486 KCDLCSKEFSTKCSLTEHMKLHQGIKK 512
+CD+C K FS SLT+H ++H G K
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
Y+C++C K F +LT+H ++H G K
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 540 KCDLCSKEFSTKHTLTEHMKLHQG 563
+CD+C K FS +LT+H ++H G
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSG 37
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 513 KCDLCSKEFSCKRSVTEHMKLHLGIK 538
+CD+C K FS S+T+H ++H G K
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLHQ 211
Y C+ C K FSSKSYL HM+ H
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHS 36
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
Y C C K FS K YL HM+ H G K
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 325 CVLCSKEFSSKSYLTEHMKLHQGIK 349
C C K FSSKSYL HM+ H G K
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 163 CVLCSKEFSSKSYLTEHMKRHQGIK 187
C C K FSSKSYL HM+ H G K
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 212 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 241
E Y C C K +S+K YL H++ H G K
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 374 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 403
E Y C C K +S+K YL H++ H G K
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQG 131
YKCD+C K + Y +LT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
YKCD+C K F +LT H ++H G K
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
YKCD+C K F LT H ++H G K
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
YKCD+C K F LT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 486 KCDLCSKEFSTKCSLTEHMKLHQGIKK 512
KCD+C K F SLT H ++H G K
Sbjct: 14 KCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
YKC++C K F +LT H ++H G K
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y C +C K F + NL KH K+H G K
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
Y C +C K F + NL KH K+H G K
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 112 CSKEYSYKHTLTEHMKLHQGIR-YKC--DLCSKEFSCKRYLTEHMKVHQGMKN---KCVL 165
C Y+ L H+ H G + + C + C K F+ +LT H H G KN
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 166 CSKEFSSKSYLTEHMKRHQGIK 187
C F++K+ + +H R IK
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 247 CSKEFSRKRRLTEHMKLHLGIKN---KCNLCSKEFSCKSHLKEHMQVHQG---ITYKCDL 300
C +++ +L H+ H G K K C K F+ HL H H G T D
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 301 CSKEFYRKQNLTKHMKVHQGMK 322
C F K N+ KH +K
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 220 CLKEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHMKLHLGIKN---KCNL 273
C Y+ L HL H G K K C K F+ LT H H G KN +
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 274 CSKEFSCKSHLKEHMQVHQGI 294
C F+ K+++K+H I
Sbjct: 71 CDLRFTTKANMKKHFNRFHNI 91
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 382 CLKEYSNKIYLTEHLKLHQGIKN---KCVLCSKEFSRKRRLTEHMKLHLGIKN---KCNL 435
C Y+ L HL H G K K C K F+ LT H H G KN +
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 436 CSKEFSCKSHLKEHMQVHQGI 456
C F+ K+++K+H I
Sbjct: 71 CDLRFTTKANMKKHFNRFHNI 91
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 301 CSKEFYRKQNLTKHMKVHQGMKN---KCVLCSKEFSSKSYLTEHMKLHQGIKN---KCDL 354
C + + L H+ H G K K C K F+S +LT H H G KN D
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 355 CSKEFSCKRYVTEHMKLHQEI 375
C F+ K + +H I
Sbjct: 71 CDLRFTTKANMKKHFNRFHNI 91
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
YKCN C K F + +L H ++H G+K
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 270 KCNLCSKEFSCKSHLKEHMQVHQGI 294
KCN C K F+ SHL H ++H G+
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGV 38
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQGI 456
KCN C K F+ SHL H ++H G+
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGV 38
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLHQEI 213
YKCN C K F+ S+L H ++H +
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGV 38
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
YKC+ C K F+ +L H ++H G+K
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
YKC+ C K F + +L H ++H G+K
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLGI 591
YKC+ C K F++ L H ++H G+
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGV 38
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 212 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 241
E YKC+ C K ++ +L H ++H G+K
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 374 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 403
E YKC+ C K ++ +L H ++H G+K
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 433 CNLCSKEFSCKSHLKEHMQVHQGI-TYKCNLCSKEFYRKQNLTKHMK 478
C C S LK+H++ H + Y C C+ F K NLTKHMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQGI-TYKCDLCSKEFYRKQNLTKHMK 316
C C S LK+H++ H + Y C C+ F K NLTKHMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 541 CDLCSKEFSTKHTLTEHMKLHQGIR-YKCDLCTKEFSRKGRLTEHMK 586
C+ C L +H++ H +R Y C C F KG LT+HMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK-KCDLCSKEFSTKCSLTEHMK 505
Y C C + L KH++ H ++ C C+ F TK +LT+HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 163 CVLCSKEFSSKSYLTEHMKRHQGIK-YKCNLCSKEFSSKSYLTEHMK 208
C C S L +H++ H ++ Y C C+ F +K LT+HMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR-YKCDLCSKEFSCKRYLTEHMK 154
Y C+ C L +H++ H +R Y C C+ F K LT+HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y+C +C K F +Q+L+ H ++H G K
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
Y+C++C K F +Q+L+ H ++H G K
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQG 131
Y+C +C K +S++ +L+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
Y+C +C K FS ++ L+ H ++H G K
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKK 39
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 487 CDLCSKEFSTKCSLTEHMKLHQGIKKKCDLCSKEFSCKRSVTEHM 531
C LC FS+ SL +H++ + K C +C KEF+ S +H+
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEH-TKVCPVCKKEFTSTDSALDHV 120
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 215 YKCDLCLKEYSNKIYLTEHLKLHQGIKNKCVLCSKEFSRKRRLTEHM 261
+ C LCL +S+ + L +H++ + K C +C KEF+ +H+
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHTK-VCPVCKKEFTSTDSALDHV 120
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 377 YKCDLCLKEYSNKIYLTEHLKLHQGIKNKCVLCSKEFSRKRRLTEHM 423
+ C LCL +S+ + L +H++ + K C +C KEF+ +H+
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHTK-VCPVCKKEFTSTDSALDHV 120
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y+C C K F +K NLT+H ++H G K
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIK 484
Y+C C K F +K NLT+H ++H G K
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
Y+C C K F++K LT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
Y+C +CSK F+ K +L +H K H G K
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y+C +CSK F +K +L +H K H G K
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
Y+C +C+K F++K L +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIK 484
Y+C +CSK F +K +L +H K H G K
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 188 YKCNLCSKEFSSKSYLTEHMKLH 210
Y+C +CSK F+ K++L +H K H
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTH 35
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQG 293
C +CSK F+ K+HL +H + H G
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTG 37
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 433 CNLCSKEFSCKSHLKEHMQVHQG 455
C +CSK F+ K+HL +H + H G
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTG 37
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 325 CVLCSKEFSSKSYLTEHMKLHQGIK 349
C +CSK F+ K++L +H K H G K
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 212 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 241
E Y+C +C K ++ K +L +H K H G K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 374 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 403
E Y+C +C K ++ K +L +H K H G K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 163 CVLCSKEFSSKSYLTEHMKRHQGIK 187
C +CSK F+ K++L +H K H G K
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 244 CVLCSKEFSRKRRLTEHMKLHLGIK 268
C +CSK F++K L +H K H G K
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 406 CVLCSKEFSRKRRLTEHMKLHLGIK 430
C +CSK F++K L +H K H G K
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLH 210
YKCN C K F+ S+LT H ++H
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIH 35
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
YKCN C K F + +LT H ++H G K
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
YKC+ C K F + +LT H ++H G K
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
YKC+ C K F+ +LT H ++H G K
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 270 KCNLCSKEFSCKSHLKEHMQVHQG 293
KCN C K F+ SHL H ++H G
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTG 37
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQG 455
KCN C K F+ SHL H ++H G
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTG 37
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
YKC+ C K F++ LT H ++H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 212 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 241
E +KC C K Y+ +++LT+H ++H G K
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 374 EITYKCDLCLKEYSNKIYLTEHLKLHQGIK 403
E +KC C K Y+ +++LT+H ++H G K
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 184 QGIK-YKCNLCSKEFSSKSYLTEHMKLH 210
G+K Y C+ C K F SKSYL HM+ H
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTH 33
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
Y C C K F K YL HM+ H G K
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 325 CVLCSKEFSSKSYLTEHMKLHQG 347
C C K F SKSYL HM+ H G
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTG 35
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 163 CVLCSKEFSSKSYLTEHMKRHQG 185
C C K F SKSYL HM+ H G
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTG 35
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
YKCN C K F NLT H +H G K
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMK 322
YKC+ C K F NLT H +H G K
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 256 RLTEHMKLHLGIKNKCNLCSKEFSCKSHLKEHMQVHQG-ITYKCDL--CSKEFYRKQNLT 312
R+ H+ H G C K + SHLK H + H G + C C + F R L+
Sbjct: 14 RIRSHICSHPG-------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELS 66
Query: 313 KHMKVH 318
+H + H
Sbjct: 67 RHRRTH 72
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 418 RLTEHMKLHLGIKNKCNLCSKEFSCKSHLKEHMQVHQG-ITYKCNL--CSKEFYRKQNLT 474
R+ H+ H G C K + SHLK H + H G + C+ C + F R L+
Sbjct: 14 RIRSHICSHPG-------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELS 66
Query: 475 KHMKLH 480
+H + H
Sbjct: 67 RHRRTH 72
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 433 CNLCSKEFSCKSHLKEHMQV-HQGITYKCNLCSKEFYRKQNLTKHM 477
C +C + F+ K + H+++ H + C C FY LT+H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 271 CNLCSKEFSCKSHLKEHMQV-HQGITYKCDLCSKEFYRKQNLTKHMKVHQGMKNKC 325
C +C + F+ K + H+++ H + C C FY LT+H+ NKC
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI-------NKC 79
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQ 481
+KCN C K F R+ +L H++LH
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLHQ 211
+KCN C K F +S+L H++LH
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 270 KCNLCSKEFSCKSHLKEHMQVHQ 292
KCN C K F +SHL H+++H
Sbjct: 14 KCNECGKGFGRRSHLAGHLRLHS 36
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQ 454
KCN C K F +SHL H+++H
Sbjct: 14 KCNECGKGFGRRSHLAGHLRLHS 36
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
Y+C+ C K FS + LT H +H G K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLH 210
Y+CN C K FS +S LT H +H
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIH 35
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
Y+CN C K F + +LT H +H G K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 486 KCDLCSKEFSTKCSLTEHMKLHQGIKK 512
+C+ C K FS + SLT H +H G K
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y+C+ C K F + +LT H +H G K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQG 131
Y+C+ C K +S + +LT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
Y+C+ C K FS + LT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 270 KCNLCSKEFSCKSHLKEHMQVHQG 293
+CN C K FS +S L H +H G
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQG 455
+CN C K FS +S L H +H G
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTG 37
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIK 484
YKCN C K F + L +H ++H G K
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
YKC+ C K FS+ +L H ++H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 188 YKCNLCSKEFSSKSYLTEHMKLH 210
YKCN C K FS S L H ++H
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIH 35
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
YKC+ C K F + L +H ++H G K
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
YKC+ C K + R+ NL H +VH G K
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
YKC C K F+R +L +H ++H G +
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
YKC+ C K F+R +L +H ++H G +
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 243 KCVLCSKEFSRKRRLTEHMKLHLGIK 268
KCV C K FSR+ L H KLH G K
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 405 KCVLCSKEFSRKRRLTEHMKLHLGIK 430
KCV C K FSR+ L H KLH G K
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 324 KCVLCSKEFSSKSYLTEHMKLHQGIK 349
KCV C K FS +S L H KLH G K
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLH 210
YKCN C K F SYL+ H ++H
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIH 35
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
YKC+ C K F YL+ H ++H G K
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y+C C K F RK L H ++H G K
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
Y+C+ C K F RK L H ++H G K
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMK 208
Y CN+C+ FS+ S L+EH++
Sbjct: 116 SYVCNVCNARFSTMSALSEHLR 137
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
YKCN C K F + +L +H ++H G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
YKC+ C K F + +L +H +VH G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 270 KCNLCSKEFSCKSHLKEHMQVHQG 293
KCN C K F+ SHL H +VH G
Sbjct: 14 KCNECGKVFTQNSHLARHRRVHTG 37
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQG 455
KCN C K F+ SHL H +VH G
Sbjct: 14 KCNECGKVFTQNSHLARHRRVHTG 37
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLH 210
YKCN C K F+ S+L H ++H
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVH 35
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
YKC+ C K F+ +L H +VH G K
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
Y+C C K FS++G L H +LH G
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMK 208
Y CN+C+ FS+ S L+EH++
Sbjct: 98 SYVCNVCNARFSTMSALSEHLR 119
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
YKC C K F + NLT H +H G K+
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMK 322
YKC C K F + NLT H +H G K
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLHQEIT 214
Y CN+C K F ++L +H+++H + T
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 271 CNLCSKEFSCKSHLKEHMQVH 291
CN+C K F +HL +H++VH
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVH 35
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 433 CNLCSKEFSCKSHLKEHMQVH 453
CN+C K F +HL +H++VH
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVH 35
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMK 322
++C C K F RK L+ H K+H G K
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
++C C K F RK L+ H K+H G K
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLH 210
Y CN C K F SKSYL H + H
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTH 35
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y+C C K F + NL H K+H G K
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
Y+C C K F + NL H K+H G K
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLH 210
Y CN C K FS KS L+ H + H
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTH 35
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQ 319
YKC LC + F K L++H +VH+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 188 YKCNLCSKEFSSKSYLTEHMKLHQ 211
YKC LC + F KS L+ H ++H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLHQE 212
+ C+ C K FSSKSYL H + H E
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAE 35
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
Y CN C K F +K +L +H ++H G K
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y C+ C K F +K +L +H ++H G K
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQG 293
CN C K F KSHL H ++H G
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTG 37
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 433 CNLCSKEFSCKSHLKEHMQVHQG 455
CN C K F KSHL H ++H G
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTG 37
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK 160
YKC+ C K F C+R L H VH G K
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEK 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y+C C K F +K L+ H ++H+G K
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
Y+C+ C K F +K L+ H ++H+G K
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
Y+CN C K F + L +H ++H G K
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y+C+ C K F + L +H +VH G K
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
Y+C+ C K FS+ +L H ++H G
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTG 37
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLH 210
Y+CN C K FS S L H ++H
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVH 35
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQG 158
YKC +C K F +L +H VH G
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 270 KCNLCSKEFSCKSHLKEHMQVHQG 293
KC +C K F SHL +H VH G
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVHQG 455
KC +C K F SHL +H VH G
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSVHSG 37
>pdb|3GBV|A Chain A, Crystal Structure Of A Putative Laci Transcriptional
Regulator From Bacteroides Fragilis
pdb|3GBV|B Chain B, Crystal Structure Of A Putative Laci Transcriptional
Regulator From Bacteroides Fragilis
Length = 304
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 15/138 (10%)
Query: 343 KLHQGIKNKCDLCSKEFSCKRYVTEH--------MKLHQEITYKCDLCLKEYSNKIYLTE 394
K+H+G+ S+E ++Y EH + LH ++ + L + + E
Sbjct: 143 KIHEGVIGSNQQESREIGFRQYXQEHHPACNILELNLHADLNIEDSRXLDD-----FFRE 197
Query: 395 HLKLHQGIK-NKCVLCSKEFSRKRRLTEHMKLHLGIKNKCNLCSKEFSCKSHLKEHMQVH 453
H + GI N V E+ ++RR ++ + + + C KE + + + ++
Sbjct: 198 HPDVKHGITFNSKVYIIGEYLQQRRKSDFSLIGYDLLERNVTCLKEGTVSFLIAQQPEL- 256
Query: 454 QGITYKCNLCSKEFYRKQ 471
QG LC +RK+
Sbjct: 257 QGFNSIKTLCDHLIFRKE 274
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
Y CN C K F K L H +H G+K
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKLH 210
Y CN C K F S+L EH+K H
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLHQGIK 484
+KCN C K F + +LT H ++H G K
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLHLG 590
Y+C C K F +KG LT H ++H G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
YKCN C K F + +L +H +H G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 443 KSHLKEHMQVH-QGITYKCNLCSKEFYRKQNLTKHMKLHQG 482
K+ L+ H ++H +KCN CS + + NL+KHMK G
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
YKCN C K F + +L +H +H G K
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVHQGMK 322
+ C C K F R +L+KH+K HQ K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 295 TYKCDLCSKEFYRKQNLTKHMKVHQGMK 322
Y+C +C K F +K L H ++H G K
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 457 TYKCNLCSKEFYRKQNLTKHMKLHQGIKK 485
YKCN C K F + +L +H +H G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLHQGIR 133
YKC+ C K Y+ K L H K+H G R
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGER 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,793,805
Number of Sequences: 62578
Number of extensions: 732105
Number of successful extensions: 6437
Number of sequences better than 100.0: 167
Number of HSP's better than 100.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 3025
Number of HSP's gapped (non-prelim): 2385
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)