RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8499
(591 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 38.5 bits (89), Expect = 0.008
Identities = 36/170 (21%), Positives = 56/170 (32%), Gaps = 26/170 (15%)
Query: 430 KNKCNLCSKEFSCKSHLKEHMQV-----HQGITYKC--NLCSKEFYRKQNLTKHMKLHQG 482
K C+ FS S L H++ + C +LC K F R L +H+ LH
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS 348
Query: 483 IKKKCDLCSKEFSTKCSLTEHMKLHQGIKKKCDLCSKEFSCKRSVTEHMKLHLGIKNKCD 542
I K L + + + ++ K + N
Sbjct: 349 IS----------PAKEKLLNSSSKFSPLLNNEPP---QSLQQYKDLKNDKKSETLSNS-- 393
Query: 543 LCSKEFSTKHTLTEHMKLH---QGIRYKCDLCTKEFSRKGRLTEHMKLHL 589
C + F L+ H+ H + K C+K F+R L H K+H
Sbjct: 394 -CIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT 442
Score = 36.2 bits (83), Expect = 0.041
Identities = 37/229 (16%), Positives = 66/229 (28%), Gaps = 29/229 (12%)
Query: 260 HMKLHLGIKNKCNLCSKEFSCKSHLKEHMQVHQGIT--YKCDLCSKEFYRKQNLTKHM-- 315
+ +L + S + +G + K C+ F R LT+H+
Sbjct: 252 DSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRS 311
Query: 316 KVHQGMKNK-----CVLCSKEFSSKSYLTEHMKLHQGIKNKCDLCSKEFSCKRYVTEHMK 370
H G K LC K FS L H+ LH I K +
Sbjct: 312 VNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPA----------KEKLLNSSS 361
Query: 371 LHQEITYKCDLCLKEYSNKIYLTEHLKLHQGIKNKCVLCSKEFSRKRRLTEHMKLHLGIK 430
+ + + ++ K + + N C + F R L+ H+ HL +
Sbjct: 362 KFSPLLNNEPP---QSLQQYKDLKNDKKSETLSNS---CIRNFKRDSNLSLHIITHLSFR 415
Query: 431 NKCNLCSKEFSCKSH---LKEHMQVHQGITYKCNLCSKEFYRKQNLTKH 476
+ L H ++H + +R+ +
Sbjct: 416 PYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLC-SILKSFRRDLDLSN 463
Score = 29.7 bits (66), Expect = 4.7
Identities = 56/341 (16%), Positives = 97/341 (28%), Gaps = 43/341 (12%)
Query: 269 NKCNLCSKEFSCKSHLKEHMQVHQGI-TYKC--DLCSKEFYRKQNLTKH-MKVHQGMKNK 324
+ C C+ FS HL H++ H G +C C K F R L++H H +
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSD- 92
Query: 325 CVLCSKEFSSKSYLTEHMKLHQGIKN---KCDLCSKEFSCKRYVTEHMKLHQEITYKCDL 381
L SK + L N L S + L + +
Sbjct: 93 --LNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNP 150
Query: 382 CLKEYSNKIYLTEHLKLHQGIKNKCVLCSKEFSRKRRLTEHMKLHLGIKNKCNLC----S 437
S+ + + LH + + + ++ ++ + ++ + S
Sbjct: 151 LPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYS 210
Query: 438 KEFSCKSHLKEHMQVHQGITYKCNLCSKEFYRKQNLTKHMKLHQGIKKKCDLCSKEFSTK 497
S E+ +T L K + + + S ++
Sbjct: 211 IPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASS 270
Query: 498 CSLTEHMKLHQGIKKKCDLCSKEFSCKRSVTEHMKLHLGIKNKCDLCSKEFSTKHTLTEH 557
S + + K + K C+ FS LT H
Sbjct: 271 QSSSPNESDSSSEKGF----------------------SLPIKSKQCNISFSRSSPLTRH 308
Query: 558 MKL-----HQGIRYKCD--LCTKEFSRKGRLTEHMKLHLGI 591
++ + C LC K FSR L H+ LH I
Sbjct: 309 LRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI 349
Score = 28.9 bits (64), Expect = 9.2
Identities = 68/409 (16%), Positives = 118/409 (28%), Gaps = 61/409 (14%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMK-NKCVLCSKEFSSKSYL---TEHMKRHQGIKYK 189
C C+ FS +LT H++ H G K ++C + S L H
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDL 93
Query: 190 CNLCSKE---------------FSSKSYLTEHMKLHQEITYK------------CDLCLK 222
+ S+ + L L +
Sbjct: 94 NSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPG 153
Query: 223 EYSNKIYLTEHLKLHQGIKNKCVLCSKEFSRKRRLTEHMKLHLGIKNKCNLC----SKEF 278
S+ + + LH + + + ++ ++ + ++ + S
Sbjct: 154 NNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPS 213
Query: 279 SCKSHLKEHMQVHQGITYKCDLCSKEFYRKQNLT---KHMKVHQGMKNKCVLCSKEFSSK 335
S E+ +T L K + + + L + S
Sbjct: 214 SSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQSS 273
Query: 336 SYLTEHMKLHQGI--KNKCDLCSKEFSCKRYVTEHMKL-----HQEITYKCD--LCLKEY 386
S +G K C+ FS +T H++ + C LC K +
Sbjct: 274 SPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLF 333
Query: 387 SNKIYLTEHLKLHQGIKNKCVL---CSKEFSRK--RRLTEHMKLHLGIKNKCNLCSKEFS 441
S L H+ LH I S +FS + ++ + +KN + S
Sbjct: 334 SRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNS 393
Query: 442 C------KSHLKEHMQVH---QGITYKCNLCSKEFYRKQNLTKHMKLHQ 481
C S+L H+ H + K CSK F R NL H K+H
Sbjct: 394 CIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT 442
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 32.2 bits (74), Expect = 0.15
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 487 CDLCSKEFSTKCSLTEHMKLHQG--IKKKCDLCSKEFSCKRSVTEHMKLHLGIKNKCDLC 544
C C+ T EHM G I ++ L E + +++ + N+C C
Sbjct: 2 CLFCNHTSDTVEENLEHMFKSHGFFIPEREYLVDLE-----GLLNYLREKIHEGNECLYC 56
Query: 545 SKEFSTKHTLTEHM--KLHQGIRYKCDLCTKEFSR 577
K+F + L +HM K H I Y+ + E +
Sbjct: 57 GKQFKSLEALRQHMRDKGHCKIPYETEEEKDEIAE 91
Score = 29.2 bits (66), Expect = 1.9
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 147 RYLTEHMKVHQGMKNKCVLCSKEFSSKSYLTEHM--KRHQGIKYKCNLCSKEFS 198
YL E K+H+G N+C+ C K+F S L +HM K H I Y+ E +
Sbjct: 41 NYLRE--KIHEG--NECLYCGKQFKSLEALRQHMRDKGHCKIPYETEEEKDEIA 90
Score = 28.4 bits (64), Expect = 3.7
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 190 CNLCSKEFSSKSYLTEHMKLHQEITYKCDLCLKEY-SNKIYLTEHLKLHQGIKNKCVLCS 248
C C+ + EHM + + +EY + L +L+ N+C+ C
Sbjct: 2 CLFCNHTSDTVEENLEHMFKS----HGFFIPEREYLVDLEGLLNYLREKIHEGNECLYCG 57
Query: 249 KEFSRKRRLTEHMK 262
K+F L +HM+
Sbjct: 58 KQFKSLEALRQHMR 71
Score = 27.2 bits (61), Expect = 7.4
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 271 CNLCSKEFSCKSHLKEHMQVHQGITYKCDLCSKE-FYRKQNLTKHMKVHQGMKNKCVLCS 329
C C+ EHM G + +E + L +++ N+C+ C
Sbjct: 2 CLFCNHTSDTVEENLEHMFKSHGF----FIPEREYLVDLEGLLNYLREKIHEGNECLYCG 57
Query: 330 KEFSSKSYLTEHMK 343
K+F S L +HM+
Sbjct: 58 KQFKSLEALRQHMR 71
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 34.0 bits (78), Expect = 0.29
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 187 KYKCNLCSKEFSSKSYLTEHMKL 209
Y CN+C EFSS L EH +
Sbjct: 73 SYVCNVCMAEFSSMDQLAEHQRT 95
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 33.5 bits (76), Expect = 0.33
Identities = 23/107 (21%), Positives = 31/107 (28%), Gaps = 20/107 (18%)
Query: 267 IKNKCNLCSKEFSCKS--HLKEHMQVHQGITYKCDLCSK---------EFYRKQNLTKHM 315
+ KC C S LK+H + G C C +R L H
Sbjct: 150 LSFKCPKSKCHRRCGSLKELKKHYKAQHGFVL-CSECIGNKKDFWNEIRLFRSSTLRDHK 208
Query: 316 KV---HQGMKN--KCVLCSKEFSSKSYLTEHMKLHQGIKNKCDLCSK 357
+G K C+ C F L H +L C +C
Sbjct: 209 NGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRH---EACHICDM 252
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 31.0 bits (70), Expect = 0.75
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 198 SSKSYLTEHMKLHQEITYKCDLCLKEYSNKIYLTEHLKLHQGIKNKCVLCSKEFSRKRRL 257
SYL + + Y C LCL +S+ + L +H++ + K C +C KEF
Sbjct: 57 DESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSK-VCPVCGKEFRNTDST 115
Query: 258 TEHM 261
+H+
Sbjct: 116 LDHV 119
Score = 28.7 bits (64), Expect = 4.3
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 98 KKKLCQDIGYKCDLCSKEYSYKHTLTEHMK-----LHQGIRYKCDLCSKEFSCKRYLTEH 152
KK L G + +E H+LT K + + + Y L + YL +
Sbjct: 10 KKYLSNHKGIFIHVTLEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDE----SSYLYKL 65
Query: 153 MKVHQGMKNKCVLCSKEFSSKSYLTEHMKRHQGIKYKCNLCSKEFSSKSYLTEHM 207
+ C LC FSS L +H++ + K C +C KEF + +H+
Sbjct: 66 LTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSK-VCPVCGKEFRNTDSTLDHV 119
Score = 28.7 bits (64), Expect = 4.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 376 TYKCDLCLKEYSNKIYLTEHLKLHQGIKNKCVLCSKEFSRKRRLTEHM 423
Y C LCL +S+ + L +H++ + K C +C KEF +H+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSK-VCPVCGKEFRNTDSTLDHV 119
Score = 27.5 bits (61), Expect = 8.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 487 CDLCSKEFSTKCSLTEHMKLHQGIKKKCDLCSKEFSCKRSVTEHM 531
C LC FS+ SL +H++ + K C +C KEF S +H+
Sbjct: 76 CPLCLMPFSSSVSLKQHIRYTEH-SKVCPVCGKEFRNTDSTLDHV 119
Score = 27.5 bits (61), Expect = 9.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVHQGMKNKCVLCSKEFSSKSYLTEHM-KRH 183
Y C LC FS L +H++ + K C +C KEF + +H+ K+H
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSK-VCPVCGKEFRNTDSTLDHVCKKH 123
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 28.2 bits (63), Expect = 0.76
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 188 YKCNLCSKEFSSKSYLTEHMKLH 210
Y+C C K F SKS L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.8 bits (62), Expect = 1.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 296 YKCDLCSKEFYRKQNLTKHMKVH 318
Y+C C K F K L +HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.0 bits (60), Expect = 1.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 458 YKCNLCSKEFYRKQNLTKHMKLH 480
Y+C C K F K L +HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.7 bits (59), Expect = 2.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 134 YKCDLCSKEFSCKRYLTEHMKVH 156
Y+C C K F K L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.7 bits (59), Expect = 2.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 486 KCDLCSKEFSTKCSLTEHMKLH 507
+C C K F +K +L EHM+ H
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
Score = 26.7 bits (59), Expect = 3.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 566 YKCDLCTKEFSRKGRLTEHMKLH 588
Y+C C K F K L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.3 bits (58), Expect = 3.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 270 KCNLCSKEFSCKSHLKEHMQVH 291
+C C K F KS L+EHM+ H
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
Score = 26.3 bits (58), Expect = 3.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 432 KCNLCSKEFSCKSHLKEHMQVH 453
+C C K F KS L+EHM+ H
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 5.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 540 KCDLCSKEFSTKHTLTEHMKLH 561
+C C K F +K L EHM+ H
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
Score = 25.5 bits (56), Expect = 6.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 162 KCVLCSKEFSSKSYLTEHMKRH 183
+C C K F SKS L EHM+ H
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
Score = 25.5 bits (56), Expect = 8.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 324 KCVLCSKEFSSKSYLTEHMKLH 345
+C C K F SKS L EHM+ H
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
Score = 25.1 bits (55), Expect = 9.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 107 YKCDLCSKEYSYKHTLTEHMKLH 129
Y+C C K + K L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|223058 PHA03366, PHA03366, FGAM-synthase; Provisional.
Length = 1304
Score = 31.9 bits (73), Expect = 1.1
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 7/80 (8%)
Query: 5 VEESKDHV--GLSPPFY---DPSRVIKHEPLDIPYEVMVKEESNESDRINIEEN--DWND 57
V H L P Y + PL + ++E R + ++ DW
Sbjct: 528 VPLPGIHFVNDLGNPVYGELRDDQFKPTFPLQPSRPLSPVSATSEDTRPSPQDESIDWAL 587
Query: 58 AVTRDCLEFFKSCPKVEVKS 77
L S P V K
Sbjct: 588 FNLNSTLLQILSHPTVGSKE 607
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 28.7 bits (65), Expect = 2.4
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 560 LHQGIRYKCDLCTKEFSRKGRLTEHMK 586
LH+GI + F R L +H+K
Sbjct: 53 LHRGIA------KRAFERSFNLADHVK 73
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 26.2 bits (58), Expect = 3.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 297 KCDLCSKEFYRKQNLTKHMKVH 318
KC C K F RK NL +H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.2 bits (58), Expect = 3.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 459 KCNLCSKEFYRKQNLTKHMKLH 480
KC C K F RK NL +H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.2 bits (58), Expect = 4.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 189 KCNLCSKEFSSKSYLTEHMKLH 210
KC C K FS KS L H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.4 bits (56), Expect = 6.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 540 KCDLCSKEFSTKHTLTEHMKLH 561
KC C K FS K L H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.4 bits (56), Expect = 7.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 162 KCVLCSKEFSSKSYLTEHMKRH 183
KC C K FS KS L H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.133 0.416
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,346,568
Number of extensions: 2492110
Number of successful extensions: 2509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2411
Number of HSP's successfully gapped: 171
Length of query: 591
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 489
Effective length of database: 6,413,494
Effective search space: 3136198566
Effective search space used: 3136198566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.8 bits)