BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy850
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 89/123 (72%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLR 133
I F P+G LV + G VG GKS+LL A+L+++ G ++ +G+ AYV Q+AWI ND+LR
Sbjct: 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLR 83
Query: 134 HNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALY 193
NILFG E Y + CAL D+ ILP GD+TEIGE+G+NLSGGQKQRV+LARA+Y
Sbjct: 84 ENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 143
Query: 194 SNS 196
SN+
Sbjct: 144 SNA 146
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 77/127 (60%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L DINF +G+L+ + G+ G+GK++LL I+ +L + GK+ G ++ SQ +WI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALA 189
T++ NI+FG ++ RY + C L DI D +GE GI LSGGQ+ R++LA
Sbjct: 83 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142
Query: 190 RALYSNS 196
RA+Y ++
Sbjct: 143 RAVYKDA 149
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 77/127 (60%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L DINF +G+L+ + G+ G+GK++LL I+ +L + GK+ G ++ SQ +WI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 94
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALA 189
T++ NI+FG ++ RY + C L DI D +GE GI LSGGQ+ R++LA
Sbjct: 95 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 154
Query: 190 RALYSNS 196
RA+Y ++
Sbjct: 155 RAVYKDA 161
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127
N L +IN KG+++ I G+ GSGK++LL IL +L ++ G + G ++ SQ +WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 128 TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVA 187
T++ NI+FG ++ RY + C L DI D T +GE G+ LSGGQ+ R++
Sbjct: 111 MPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 188 LARALYSNS 196
LARA+Y ++
Sbjct: 171 LARAVYKDA 179
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127
N L +IN KG+++ I G+ GSGK++LL IL +L ++ G + G ++ SQ +WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 128 TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVA 187
T++ NI+FG ++ RY + C L DI D T +GE G+ LSGGQ+ R++
Sbjct: 111 MPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 188 LARALYSNS 196
LARA+Y ++
Sbjct: 171 LARAVYKDA 179
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 82/144 (56%)
Query: 53 NGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112
NG++S + L DINF +G+L+ + G+ G+GK++LL I+ +L + GK+
Sbjct: 36 NGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
Query: 113 SREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIG 172
G ++ SQ +WI T++ NI+ G ++ RY + C L DI D +G
Sbjct: 96 KHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 173 ERGINLSGGQKQRVALARALYSNS 196
E GI LSGGQ+ R++LARA+Y ++
Sbjct: 156 EGGITLSGGQRARISLARAVYKDA 179
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L DINF +G+L+ + G+ G+GK++LL I+ +L + GK+ G ++ SQ +WI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALA 189
T++ NI+FG ++ RY + C L DI D +GE GI LS GQ+ +++LA
Sbjct: 113 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLA 172
Query: 190 RALYSNS 196
RA+Y ++
Sbjct: 173 RAVYKDA 179
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 1/144 (0%)
Query: 53 NGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112
NG++S + L DINF +G+L+ + G+ G+GK++LL I+ +L + GK+
Sbjct: 36 NGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
Query: 113 SREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIG 172
G ++ SQ +WI T++ NI+ G ++ RY + C L DI D +G
Sbjct: 96 KHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 173 ERGINLSGGQKQRVALARALYSNS 196
E GI LSGGQ+ R++LARA+Y ++
Sbjct: 155 EGGITLSGGQRARISLARAVYKDA 178
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 1/144 (0%)
Query: 53 NGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112
NG++S + L DINF +G+L+ + G+ G+GK++LL I+ +L + GK+
Sbjct: 36 NGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
Query: 113 SREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIG 172
G ++ SQ +WI T++ NI+ G ++ RY + C L DI D +G
Sbjct: 96 KHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 173 ERGINLSGGQKQRVALARALYSNS 196
E GI LSGGQ+ R++LARA+Y ++
Sbjct: 155 EGGITLSGGQRARISLARAVYKDA 178
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 77/129 (59%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127
N L +IN KG+++ I G+ GSGK++LL IL +L ++ G + G ++ SQ +WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 128 TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVA 187
T++ NI+ G ++ RY + C L DI D T +GE G+ LSGGQ+ R++
Sbjct: 111 MPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 188 LARALYSNS 196
LARA+Y ++
Sbjct: 171 LARAVYKDA 179
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 77/129 (59%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127
N L +IN KG+++ I G+ GSGK++LL IL +L ++ G + G ++ SQ +WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 128 TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVA 187
T++ NI+ G ++ RY + C L DI D T +GE G+ LSGGQ+ R++
Sbjct: 111 MPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 188 LARALYSNS 196
LARA+Y ++
Sbjct: 171 LARAVYKDA 179
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L DINF +G+L+ + G+ G+GK++LL I+ +L + GK+ G ++ SQ +WI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALA 189
T++ NI+ G ++ RY + C L DI D +GE GI LSGGQ+ R++LA
Sbjct: 83 GTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 141
Query: 190 RALYSNS 196
RA+Y ++
Sbjct: 142 RAVYKDA 148
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127
N L +IN KG+++ I G+ GSGK++LL IL +L ++ G + G ++ SQ +WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 128 TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVA 187
T++ NI+ G ++ RY + C L DI D T +GE G+ LSGGQ+ R++
Sbjct: 111 MPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 169
Query: 188 LARALYSNS 196
LARA+Y ++
Sbjct: 170 LARAVYKDA 178
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L DINF +G+L+ + G+ G+GK++LL I+ +L + GK+ G ++ SQ +WI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALA 189
T++ NI+ G ++ RY + C L DI D +GE GI LS GQ+ +++LA
Sbjct: 113 GTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLA 171
Query: 190 RALYSNS 196
RA+Y ++
Sbjct: 172 RAVYKDA 178
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------T 117
L DIN KG+ V G G GKS L+ I T+G++ +G
Sbjct: 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416
Query: 118 CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD-IHILPGGDQTEIGERGI 176
V Q+ + +DT++ NIL G P A D I LP G TE+GERG+
Sbjct: 417 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476
Query: 177 NLSGGQKQRVALARALYSN 195
LSGGQKQR+++AR +N
Sbjct: 477 KLSGGQKQRLSIARIFLNN 495
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------- 117
L DI+F A ++ G G GKS + + + TAG+++ +G
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ 77
Query: 118 CAYVSQEAWITNDTLRHNILFG--EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERG 175
+VSQ++ I T+R N+ +G + + ++ L + + +P TE+GERG
Sbjct: 78 IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERG 137
Query: 176 INLSGGQKQRVALARALYSN 195
+ +SGGQ+QR+A+ARA N
Sbjct: 138 VKISGGQRQRLAIARAFLRN 157
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAY 120
+N G+ V + G+ G GKS ++ +L GK++ +G A
Sbjct: 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAV 496
Query: 121 VSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCAL-NTD--IHILPGGDQTEIGERGIN 177
VSQE + N T+ NI G+ E + + C + N + I LP G T +G+RG
Sbjct: 497 VSQEPALFNCTIEENISLGK--EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQ 554
Query: 178 LSGGQKQRVALARALYSN 195
LSGGQKQR+A+ARAL N
Sbjct: 555 LSGGQKQRIAIARALVRN 572
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 22/141 (15%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG-----------KLSREGT---CA 119
++F G+ + + G G GKS ++ A+L + T G L+ E T A
Sbjct: 1098 LSFSVEPGQTLALVGPSGCGKSTVV-ALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIA 1156
Query: 120 YVSQEAWITNDTLRHNILFGEPFEPQRY-YKTLYNCALNTDIH----ILPGGDQTEIGER 174
VSQE + + ++ NI++G +P + A +IH LP G +T +G+R
Sbjct: 1157 IVSQEPTLFDCSIAENIIYG--LDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDR 1214
Query: 175 GINLSGGQKQRVALARALYSN 195
G LSGGQKQR+A+ARAL N
Sbjct: 1215 GTQLSGGQKQRIAIARALVRN 1235
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------- 116
AL +IN P GK V + G GSGKS + I G + +G
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417
Query: 117 TCAYVSQEAWITNDTLRHNILFGEPFEPQR-YYKTLYNCALNTD-IHILPGGDQTEIGER 174
A VSQ + NDT+ +NI + E R + A D I+ + G T IGE
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN 477
Query: 175 GINLSGGQKQRVALARALYSNS 196
G+ LSGGQ+QR+A+ARAL +S
Sbjct: 478 GVLLSGGQRQRIAIARALLRDS 499
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------- 116
AL +IN P GK V + G GSGKS + I G++ +G
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRN 417
Query: 117 TCAYVSQEAWITNDTLRHNILFG--EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
A VSQ + NDT+ +NI + E + ++ + I+ + G T IGE
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477
Query: 175 GINLSGGQKQRVALARALYSNS 196
G+ LSGGQ+QR+A+ARAL +S
Sbjct: 478 GVLLSGGQRQRIAIARALLRDS 499
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
AL ++F P+GK V + G GSGKS + +G + +G
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR 417
Query: 118 -CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD----IHILPGGDQTEIG 172
A VSQ + NDT+ +NI + E R + + A I +P G T IG
Sbjct: 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTR--EQIEQAARQAHAMEFIENMPQGLDTVIG 475
Query: 173 ERGINLSGGQKQRVALARALYSNS 196
E G +LSGGQ+QRVA+ARAL ++
Sbjct: 476 ENGTSLSGGQRQRVAIARALLRDA 499
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-------------SREG 116
L INFF P G + G GSGKS + +L + G + S
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIA-KLLYRFYDAEGDIKIGGKNVNKYNRNSIRS 93
Query: 117 TCAYVSQEAWITNDTLRHNILFGE-PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERG 175
V Q+ + N+T+++NIL+G+ + K + L I LP T +G +G
Sbjct: 94 IIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKG 153
Query: 176 INLSGGQKQRVALARAL 192
+ LSGG++QR+A+AR L
Sbjct: 154 MKLSGGERQRIAIARCL 170
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 23/143 (16%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCA 119
D + P G + + G GSGKS +L +L +G +S +G
Sbjct: 393 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 452
Query: 120 YVSQEAWITNDTLRHNILFG--EPF-----EPQRYYKTLYNCALNTDIHILPGGDQTEIG 172
VSQE + + ++ NI +G +P E QR + A I P G T +G
Sbjct: 453 TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAF---IRNFPQGFNTVVG 509
Query: 173 ERGINLSGGQKQRVALARALYSN 195
E+G+ LSGGQKQR+A+ARAL N
Sbjct: 510 EKGVLLSGGQKQRIAIARALLKN 532
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 23/143 (16%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCA 119
D + P G + + G GSGKS +L +L +G +S +G
Sbjct: 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421
Query: 120 YVSQEAWITNDTLRHNILFG--EPF-----EPQRYYKTLYNCALNTDIHILPGGDQTEIG 172
VSQE + + ++ NI +G +P E QR + A I P G T +G
Sbjct: 422 TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAF---IRNFPQGFNTVVG 478
Query: 173 ERGINLSGGQKQRVALARALYSN 195
E+G+ LSGGQKQR+A+ARAL N
Sbjct: 479 EKGVLLSGGQKQRIAIARALLKN 501
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 14/136 (10%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------- 117
L D++F G+ + + G G+GKS +L + ++G + +G
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH 129
Query: 118 CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCA-LNTDIHILPGGDQTEIGERGI 176
V Q+ + NDT+ NI +G + A ++ I P G +T++GERG+
Sbjct: 130 IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGL 189
Query: 177 NLSGGQKQRVALARAL 192
LSGG+KQRVA+AR +
Sbjct: 190 KLSGGEKQRVAIARTI 205
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 19/139 (13%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------T 117
L + F GK+ + G GSGKS + + + + T GK+ +G
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94
Query: 118 CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHIL----PGGDQTEIGE 173
A V QE + + R NI +G P + + A+ + H P G TE+GE
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRTPT--MEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 174 RGINLSGGQKQRVALARAL 192
G LSGGQ+Q VALARAL
Sbjct: 153 TGNQLSGGQRQAVALARAL 171
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 19/139 (13%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------T 117
L + F GK+ + G GSGKS + + + + T GK+ +G
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94
Query: 118 CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHIL----PGGDQTEIGE 173
A V QE + + R NI +G P + + A+ + H P G TE+GE
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRTPT--MEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 174 RGINLSGGQKQRVALARAL 192
G LSGGQ+Q VALARAL
Sbjct: 153 TGNQLSGGQRQAVALARAL 171
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 74 INFFAPKGKLVGICGAVGSGKSAL------LYAILSQLRSTAGKLSREGTCAY------- 120
+N G+ V + G G GKS LY L + S G+ R Y
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468
Query: 121 VSQEAWITNDTLRHNILFG-EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLS 179
VSQE + T+ NI +G E K + I LP T +GERG LS
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLS 528
Query: 180 GGQKQRVALARALYSN 195
GGQKQR+A+ARAL N
Sbjct: 529 GGQKQRIAIARALVRN 544
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAW 126
KG+ + + G+ G GKS ++ + AG + +G VSQE
Sbjct: 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI 1117
Query: 127 ITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHI----LPGGDQTEIGERGINLSGGQ 182
+ + ++ NI +G+ Y + + A +IH LP T +G++G LSGGQ
Sbjct: 1118 LFDCSIAENIAYGDNSRVVSY-EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176
Query: 183 KQRVALARAL 192
KQR+A+ARAL
Sbjct: 1177 KQRIAIARAL 1186
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 74 INFFAPKGKLVGICGAVGSGKSAL------LYAILSQLRSTAGKLSREGTCAY------- 120
+N G+ V + G G GKS LY L + S G+ R Y
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468
Query: 121 VSQEAWITNDTLRHNILFG-EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLS 179
VSQE + T+ NI +G E K + I LP T +GERG LS
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLS 528
Query: 180 GGQKQRVALARALYSN 195
GGQKQR+A+ARAL N
Sbjct: 529 GGQKQRIAIARALVRN 544
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAW 126
KG+ + + G+ G GKS ++ + AG + +G VSQE
Sbjct: 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI 1117
Query: 127 ITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHI----LPGGDQTEIGERGINLSGGQ 182
+ + ++ NI +G+ Y + + A +IH LP T +G++G LSGGQ
Sbjct: 1118 LFDCSIAENIAYGDNSRVVSY-EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176
Query: 183 KQRVALARAL 192
KQR+A+ARAL
Sbjct: 1177 KQRIAIARAL 1186
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------ 116
+ L + F G++ + G GSGKS + + + + T G+L +G
Sbjct: 31 LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 90
Query: 117 -TCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHI----LPGGDQTEI 171
A V QE + +L+ NI +G +P + + A+ + H LP G TE+
Sbjct: 91 RQVAAVGQEPQVFGRSLQENIAYGLTQKPT--MEEITAAAVKSGAHSFISGLPQGYDTEV 148
Query: 172 GERGINLSGGQKQRVALARAL 192
E G LSGGQ+Q VALARAL
Sbjct: 149 DEAGSQLSGGQRQAVALARAL 169
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 18/151 (11%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
+ L +IN +G+++GI G GSGKS L I G++ +G ++ W+
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 129 NDT---LRHNILFGEPF-------EP-QRYYKTLYNCAL---NTDIHILPGGDQTEIGER 174
L+ N+L P K +Y L + I L G T +GE+
Sbjct: 83 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142
Query: 175 GINLSGGQKQRVALARALYSNS----FEQQT 201
G LSGGQ+QR+A+ARAL +N F+Q T
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKILIFDQAT 173
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
+ L +IN +G+++GI G GSGKS L I G++ +G ++ W+
Sbjct: 19 VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 78
Query: 129 NDT---LRHNILFGEPF-------EP-QRYYKTLYNCAL---NTDIHILPGGDQTEIGER 174
L+ N+L P K +Y L + I L G T +GE+
Sbjct: 79 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 138
Query: 175 GINLSGGQKQRVALARALYSN 195
G LSGGQ+QR+A+ARAL +N
Sbjct: 139 GAGLSGGQRQRIAIARALVNN 159
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
+ L +IN +G+++GI G GSGKS L I G++ +G ++ W+
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76
Query: 129 NDT---LRHNILFGEPF-------EP-QRYYKTLYNCAL---NTDIHILPGGDQTEIGER 174
L+ N+L P K +Y L + I L G T +GE+
Sbjct: 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 136
Query: 175 GINLSGGQKQRVALARALYSN 195
G LSGGQ+QR+A+ARAL +N
Sbjct: 137 GAGLSGGQRQRIAIARALVNN 157
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
+ L +IN +G+++GI G GSGKS L I G++ +G ++ W+
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 129 NDT---LRHNILFGEPF-------EP-QRYYKTLYNCAL---NTDIHILPGGDQTEIGER 174
L+ N+L P K +Y L + I L G T +GE+
Sbjct: 83 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142
Query: 175 GINLSGGQKQRVALARALYSN 195
G LSGGQ+QR+A+ARAL +N
Sbjct: 143 GAGLSGGQRQRIAIARALVNN 163
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
+ L +IN +G+++GI G GSGKS L I G++ +G ++ W+
Sbjct: 19 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 78
Query: 129 NDT---LRHNILFGEPF-------EP-QRYYKTLYNCAL---NTDIHILPGGDQTEIGER 174
L+ N+L P K +Y L + I L G T +GE+
Sbjct: 79 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 138
Query: 175 GINLSGGQKQRVALARALYSN 195
G LSGGQ+QR+A+ARAL +N
Sbjct: 139 GAGLSGGQRQRIAIARALVNN 159
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
+ L +IN +G+++GI G GSGKS L I G++ +G ++ W+
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76
Query: 129 NDT---LRHNILFGEPF-------EP-QRYYKTLYNCAL---NTDIHILPGGDQTEIGER 174
L+ N+L P K +Y L + I L G T +GE+
Sbjct: 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 136
Query: 175 GINLSGGQKQRVALARALYSN 195
G LSGGQ+QR+A+ARAL +N
Sbjct: 137 GAGLSGGQRQRIAIARALVNN 157
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
+ L +IN +G+++GI G GSGKS L I G++ +G ++ W+
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 129 NDT---LRHNILFGEPF-------EP-QRYYKTLYNCAL---NTDIHILPGGDQTEIGER 174
L+ N+L P K +Y L + I L G T +GE+
Sbjct: 83 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142
Query: 175 GINLSGGQKQRVALARALYSN 195
G LSGGQ+QR+A+ARAL +N
Sbjct: 143 GAGLSGGQRQRIAIARALVNN 163
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL +++ P G++ G+ GA G+GKS L+ + R T G + +G E+ +T
Sbjct: 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER--------GI----- 176
+ ++F + F N AL ++ P + E+ R G+
Sbjct: 103 ARRQIGMIF-QHFNLLSSRTVFGNVALPLELDNTP---KDEVKRRVTELLSLVGLGDKHD 158
Query: 177 ----NLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209
NLSGGQKQRVA+ARAL SN VLLC
Sbjct: 159 SYPSNLSGGQKQRVAIARALASNPK--------VLLC 187
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------T 117
L + F GK+ + G GSGKS + + + + T GK+ +G
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94
Query: 118 CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHIL----PGGDQTEIGE 173
A V QE + + R NI +G P + + A+ + H P G TE+GE
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRTPT--MEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 174 RGINLSGGQKQRVALARAL 192
G L+ GQ+Q VALARAL
Sbjct: 153 TGNQLAVGQRQAVALARAL 171
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 29/157 (18%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL +++ P G++ G+ GA G+GKS L+ + R T G + +G E+ +T
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER--------GI----- 176
+ ++F + F N AL ++ P + E+ R G+
Sbjct: 80 ARRQIGMIF-QHFNLLSSRTVFGNVALPLELDNTP---KDEVKRRVTELLSLVGLGDKHD 135
Query: 177 ----NLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209
NLSGGQKQRVA+ARAL SN VLLC
Sbjct: 136 SYPSNLSGGQKQRVAIARALASNPK--------VLLC 164
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE-------------GTCAY 120
+NF G LV + G GSGKS L+ I + G++ + G +
Sbjct: 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISA 421
Query: 121 VSQEAWITNDTLRHNILFG-EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLS 179
V QE + + T++ N+ +G E + ++ I LP G + + G N S
Sbjct: 422 VPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481
Query: 180 GGQKQRVALARAL 192
GGQKQR+++ARAL
Sbjct: 482 GGQKQRLSIARAL 494
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 37/180 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL +++ P G++ G+ GA G+GKS L+ + R T G + +G E+ +T
Sbjct: 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER--------GI----- 176
+ +F + F N AL ++ P + E+ R G+
Sbjct: 103 ARRQIGXIF-QHFNLLSSRTVFGNVALPLELDNTP---KDEVKRRVTELLSLVGLGDKHD 158
Query: 177 ----NLSGGQKQRVALARALYSNSFEQQTFHFLVLLC--------PCVSLQSILLMEEVN 224
NLSGGQKQRVA+ARAL SN VLLC P + + L++++N
Sbjct: 159 SYPSNLSGGQKQRVAIARALASNPK--------VLLCDQATSALDPATTRSILELLKDIN 210
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC--------- 118
N L +I+F G+ VG+ G GSGKS LL A L +L +T G++ +G
Sbjct: 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQW 92
Query: 119 ----AYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
+ Q+ +I + T R N+ Q +K L + I PG + +
Sbjct: 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 175 GINLSGGQKQRVALARALYSNS 196
G LS G KQ + LAR++ S +
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKA 174
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 75/157 (47%), Gaps = 30/157 (19%)
Query: 60 LKAEDVERNIA----LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKLSR 114
L+AE++++ I L I+ KG+ V I GA GSGKS LLY IL L + T GK+
Sbjct: 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFL 63
Query: 115 EGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCAL-NTDIHILP-GGDQTEIG 172
EG + E + +L N G F Q +Y AL N + +L G + E
Sbjct: 64 EGKEVDYTNEKEL---SLLRNRKLGFVF--QFHYLIPELTALENVIVPMLKMGKPKKEAK 118
Query: 173 ERG-----------------INLSGGQKQRVALARAL 192
ERG LSGG++QRVA+ARAL
Sbjct: 119 ERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 28/167 (16%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-----------SREGTC 118
AL +IN G+ + + G GSGKS LLY I + T+GK+ ++
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV 77
Query: 119 AYVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALN---TDIHILPGGDQTEIGER 174
V Q A + T+ NI F P E ++ + + + +HI D+ +
Sbjct: 78 GLVFQNWALYPHMTVYKNIAF--PLELRKAPREEIDKKVREVAKMLHI----DKL-LNRY 130
Query: 175 GINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLME 221
LSGGQ+QRVA+ARAL L+L P +L ++L +E
Sbjct: 131 PWQLSGGQQQRVAIARALVKEP------EVLLLDEPLSNLDALLRLE 171
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------- 116
L DI F G+ V + G GSGK+ ++ ++ G++ +G
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429
Query: 117 TCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD--IHILPGGDQTEIGER 174
+ V Q+ + + T++ N+ +G P K ++D I LP G +T + +
Sbjct: 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLT-HSDHFIKHLPEGYETVLTDN 488
Query: 175 GINLSGGQKQRVALARALYSN 195
G +LS GQ+Q +A+ RA +N
Sbjct: 489 GEDLSQGQRQLLAITRAFLAN 509
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------- 117
+N +L +++ G+ I G G+GK+ L I +G++ +G
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK 71
Query: 118 --CAYVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
A+V Q + + ++ N+ FG + + K + + A + I L +
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-------LDRN 124
Query: 175 GINLSGGQKQRVALARALYSN 195
+ LSGG++QRVALARAL +N
Sbjct: 125 PLTLSGGEQQRVALARALVTN 145
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 37/166 (22%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127
+ L D+N GK+ + G GSGK+ LL IL+ L + AG++ +G+ A + ++
Sbjct: 24 DYVLKDVNAEFETGKIYVVVGKNGSGKTTLL-KILAGLLAAAGEIFLDGSPA----DPFL 78
Query: 128 TNDTLRHNI--LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER----------- 174
LR N+ +F P + A + +I G D++E+ +R
Sbjct: 79 ----LRKNVGYVFQNPSSQIIGATVEEDVAFSLEIM---GLDESEMRKRIKKVLELVGLS 131
Query: 175 ------GINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214
+NLSGGQKQR+A+A L ++ FL L P L
Sbjct: 132 GLAAADPLNLSGGQKQRLAIASMLARDT------RFLALDEPVSML 171
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 30/138 (21%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-----------SREGTCAYVS 122
++F +G++VG+ G GSGK+ +L I R T G + ++ V
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF 93
Query: 123 QE-AWITNDTLRHNILFG--EPFEPQ-----RYYKTLYNCALNTDIHILPGGDQTEIGER 174
Q A + T+ N+ FG E P+ R + L L + + P
Sbjct: 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH--------- 144
Query: 175 GINLSGGQKQRVALARAL 192
LSGGQ+QRVALARAL
Sbjct: 145 --ELSGGQQQRVALARAL 160
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 35/146 (23%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW 126
N +NF KG ++ + G G GKS LL +L R GK+ + +V Q
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQ--- 73
Query: 127 ITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHI----LPGGDQTEIGERGIN----- 177
F PF Y L + HI P ++ + ++
Sbjct: 74 ----------FFSSPFA----YSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT 119
Query: 178 ---------LSGGQKQRVALARALYS 194
LSGGQ+Q + +ARA+ S
Sbjct: 120 HLAKREFTSLSGGQRQLILIARAIAS 145
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
A+ I+ P+G++V + GA G+GK+ L AI +R+ GK+ G ++ A + N
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ-DITNKPAHVIN 79
Query: 130 DTLRHNILFGEPFEPQ-RYYKTLYNCALNTD-----------IHILPGGDQTEIGERGIN 177
+ G P+ Y+ L A N I L + + + G
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT 139
Query: 178 LSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEEVNV 225
LSGG++Q +A+ RAL S L P + L IL+ E V
Sbjct: 140 LSGGEQQXLAIGRALXSRP------KLLXXDEPSLGLAPILVSEVFEV 181
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 59/147 (40%), Gaps = 27/147 (18%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAIL-------------SQLRSTAGKL--- 112
+AL ++N G+ GI G G+GK+ + I +L ++ GKL
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 113 SREGTCAYVSQE-AWITNDTLRHNILF---GEPFEPQRYYKTLYNCALNTDIHILPGGDQ 168
+ V Q A N T NI F + K + A DIH +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 169 TEIGERGINLSGGQKQRVALARALYSN 195
E LSGGQ+QRVALARAL +
Sbjct: 139 RE-------LSGGQQQRVALARALVKD 158
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 61/152 (40%), Gaps = 34/152 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG------------------K 111
AL ++N +G+ V I G GSGKS +L I + T G K
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 112 LSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD---IHILPGGDQ 168
+ R+ Q I T N+ F+ Y A++ + L
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFK--------YRGAMSGEERRKRALECLKM 131
Query: 169 TEIGERGIN-----LSGGQKQRVALARALYSN 195
E+ ER N LSGGQ+QRVA+ARAL +N
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANN 163
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC--AYVSQEAW 126
+ DINF + + G G+GKS L+ + +L T+G++ C AY+ Q A+
Sbjct: 683 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAF 740
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 61/152 (40%), Gaps = 34/152 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG------------------K 111
AL ++N +G+ V I G GSGKS +L I + T G K
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 112 LSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD---IHILPGGDQ 168
+ R+ Q I T N+ F+ Y A++ + L
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFK--------YRGAMSGEERRKRALECLKM 131
Query: 169 TEIGERGIN-----LSGGQKQRVALARALYSN 195
E+ ER N LSGGQ+QRVA+ARAL +N
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANN 163
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC--AYVSQEAW 126
+ DINF + + G G+GKS L+ + +L T+G++ C AY+ Q A+
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAF 746
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 58/147 (39%), Gaps = 27/147 (18%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAIL-------------SQLRSTAGKL--- 112
+AL ++N G+ GI G G+GK+ + I +L ++ GKL
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 113 SREGTCAYVSQE-AWITNDTLRHNILF---GEPFEPQRYYKTLYNCALNTDIHILPGGDQ 168
+ V Q A N T NI F + K + A DIH +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 169 TEIGERGINLSGGQKQRVALARALYSN 195
E LSG Q+QRVALARAL +
Sbjct: 139 RE-------LSGAQQQRVALARALVKD 158
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
KG+++GI G G GK+ + + T GK+ + T AY Q + + +L
Sbjct: 311 KGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELL-- 368
Query: 140 EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN-LSGGQKQRVALARALYSNS 196
+ + Y L + I+ ++ +R +N LSGG+ QRVA+A L ++
Sbjct: 369 SKIDASKLNSNFYKTELLKPLGII------DLYDREVNELSGGELQRVAIAATLLRDA 420
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 23/143 (16%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRST--AGKLSREGTC-AYVSQEAWITNDTLRHNI 136
+G +VGI G G+GKS + + QL S +G A+ E + L++
Sbjct: 46 EGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105
Query: 137 LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQT-------------EIGERGI-NLSGGQ 182
+ P +Y + I +L D+T + ER I +LSGG+
Sbjct: 106 I--RPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGE 163
Query: 183 KQRVALARALYSNSFEQQTFHFL 205
QRVA+A AL N+ TF+F
Sbjct: 164 LQRVAIAAALLRNA----TFYFF 182
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC--AYVSQEAW 126
+ DINF + + G G+GKS L+ + +L T+G++ C AY+ Q A+
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAF 746
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 28/140 (20%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTL 132
DIN +G+ V G G GKS LL I T+G L ++ ++ NDT
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-------FIGEKRM--NDTP 71
Query: 133 RHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN--------------- 177
G F+ Y L + A N + G + E+ + +N
Sbjct: 72 PAERGVGMVFQSYALYPHL-SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK 130
Query: 178 ---LSGGQKQRVALARALYS 194
LSGGQ+QRVA+ R L +
Sbjct: 131 PKALSGGQRQRVAIGRTLVA 150
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 28/140 (20%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTL 132
DIN +G+ V G G GKS LL I T+G L ++ ++ NDT
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-------FIGEKRM--NDTP 71
Query: 133 RHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN--------------- 177
G F+ Y L + A N + G + E+ + +N
Sbjct: 72 PAERGVGMVFQSYALYPHL-SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK 130
Query: 178 ---LSGGQKQRVALARALYS 194
LSGGQ+QRVA+ R L +
Sbjct: 131 PKALSGGQRQRVAIGRTLVA 150
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 28/140 (20%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTL 132
DIN +G+ V G G GKS LL I T+G L ++ ++ NDT
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-------FIGEKRM--NDTP 71
Query: 133 RHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN--------------- 177
G F+ Y L + A N + G + E+ + +N
Sbjct: 72 PAERGVGMVFQSYALYPHL-SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK 130
Query: 178 ---LSGGQKQRVALARALYS 194
LSGGQ+QRVA+ R L +
Sbjct: 131 PKALSGGQRQRVAIGRTLVA 150
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 60 LKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA 119
++ +DV + L ++ G+++ + G G+GKS LL + AG S +G+
Sbjct: 5 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARM-------AGMTSGKGSIQ 57
Query: 120 YVSQ--EAWITNDTLRHNILFGE----PFE-PQRYYKTLYNC------ALNTDIHILPGG 166
+ Q EAW H + PF P +Y TL+ LN L
Sbjct: 58 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD 117
Query: 167 DQTEIGERGINLSGGQKQRVALA 189
D ++G LSGG+ QRV LA
Sbjct: 118 D--KLGRSTNQLSGGEWQRVRLA 138
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
KG+++GI G G GK+ + + T GK+ + T AY Q + + +L
Sbjct: 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL-- 438
Query: 140 EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI-NLSGGQKQRVALARALYSNS 196
+ + Y L + I+ ++ +R + +LSGG+ QRVA+A L ++
Sbjct: 439 SKIDSSKLNSNFYKTELLKPLGII------DLYDRNVEDLSGGELQRVAIAATLLRDA 490
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 60 LKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA 119
++ +DV + L ++ G+++ + G G+GKS LL + AG S +G+
Sbjct: 5 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARM-------AGMTSGKGSIQ 57
Query: 120 YVSQ--EAWITNDTLRHNILFGE----PFE-PQRYYKTLYNC------ALNTDIHILPGG 166
+ Q EAW H + PF P +Y TL+ LN L
Sbjct: 58 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD 117
Query: 167 DQTEIGERGINLSGGQKQRVALA 189
D ++G LSGG+ QRV LA
Sbjct: 118 D--KLGRSTNQLSGGEWQRVRLA 138
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
KG+++GI G G GK+ + + T GK+ + T AY Q + + +L
Sbjct: 367 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL-- 424
Query: 140 EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI-NLSGGQKQRVALARALYSNS 196
+ + Y L + I+ ++ +R + +LSGG+ QRVA+A L ++
Sbjct: 425 SKIDSSKLNSNFYKTELLKPLGII------DLYDRNVEDLSGGELQRVAIAATLLRDA 476
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 165 GGDQTEIGERGINLSGGQKQRVALARAL 192
G D+ G+ ++LSGGQ+QRV++ARAL
Sbjct: 141 GIDERAQGKYPVHLSGGQQQRVSIARAL 168
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-------------SREG 116
A+ +N G+ + + G G GK+ L I T G++ R
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 85
Query: 117 TCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTE--IGER 174
+ + S W + T+ NI F P + +++ K + + +L Q E +
Sbjct: 86 SMVFQSYAVW-PHMTVYENIAF--PLKIKKFPKDEIDKRVRWAAELL----QIEELLNRY 138
Query: 175 GINLSGGQKQRVALARAL 192
LSGGQ+QRVA+ARA+
Sbjct: 139 PAQLSGGQRQRVAVARAI 156
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 28/137 (20%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS-------------REGTCAY 120
++F G+ V + G G GK+ L + + T+G++ RE +
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81
Query: 121 VSQEAWITNDTLRHNILFGEPFEPQR-----YYKTLYNCALNTDIHILPGGDQTEIGERG 175
A + T+ NI F P +R K + A I L + +
Sbjct: 82 -QNYALYPHMTVFENIAF--PLRARRISKDEVEKRVVEIARKLLIDNL-------LDRKP 131
Query: 176 INLSGGQKQRVALARAL 192
LSGGQ+QRVALARAL
Sbjct: 132 TQLSGGQQQRVALARAL 148
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-------------SREG 116
A+ +N G+ + + G G GK+ L I T G++ R
Sbjct: 27 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 86
Query: 117 TCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTE--IGER 174
+ + S W + T+ NI F P + +++ K + + +L Q E +
Sbjct: 87 SMVFQSYAVW-PHMTVYENIAF--PLKIKKFPKDEIDKRVRWAAELL----QIEELLNRY 139
Query: 175 GINLSGGQKQRVALARAL 192
LSGGQ+QRVA+ARA+
Sbjct: 140 PAQLSGGQRQRVAVARAI 157
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 178 LSGGQKQRVALARALYSN 195
LSGGQ+QRVA+ARAL +N
Sbjct: 146 LSGGQQQRVAIARALANN 163
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 63 EDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVS 122
+DV + L ++ G+++ + G G+GKS LL AG S +G+ +
Sbjct: 8 QDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA-------RXAGXTSGKGSIQFAG 60
Query: 123 Q--EAWITNDTLRHNILFGE----PFE-PQRYYKTLYNC------ALNTDIHILPGGDQT 169
Q EAW H + PF P +Y TL+ LN L D
Sbjct: 61 QPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-- 118
Query: 170 EIGERGINLSGGQKQRVALA 189
++G LSGG+ QRV LA
Sbjct: 119 KLGRSTNQLSGGEWQRVRLA 138
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 63 EDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVS 122
+DV + L ++ G+++ + G G+GKS LL AG S +G+ +
Sbjct: 8 QDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA-------RXAGXTSGKGSIQFAG 60
Query: 123 Q--EAWITNDTLRHNILFGE----PFE-PQRYYKTLYNC------ALNTDIHILPGGDQT 169
Q EAW H + PF P +Y TL+ LN L D
Sbjct: 61 QPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-- 118
Query: 170 EIGERGINLSGGQKQRVALA 189
++G LSGG+ QRV LA
Sbjct: 119 KLGRSTNQLSGGEWQRVRLA 138
>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5A|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5B|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5U|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
Length = 223
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLB|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLP|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PM3|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin
Variant X(99175190)BT
Length = 223
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin Variant X(Triple.Glu)bt.D2
pdb|1V2L|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.D1
pdb|1V2M|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.A1
Length = 223
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UOP|A Chain A, Bovine Trypsin Variant X(triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UQO|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 223
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PWC|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PYH|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3Q00|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Comlex
With Small Molecule Inhibitor
Length = 223
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 223
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 223
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UPE|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|B Chain B, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
Length = 223
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|B Chain B, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|C Chain C, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|D Chain D, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|E Chain E, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|F Chain F, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|G Chain G, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|H Chain H, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|I Chain I, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|J Chain J, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|K Chain K, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|L Chain L, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|M Chain M, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|N Chain N, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|O Chain O, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|P Chain P, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V12|A Chain A, Bovine Trypsin Variant X(tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V13|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S++ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYDSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+ +S P +SA
Sbjct: 97 DSRVASISLPTSCASA 112
>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ +T++ ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSETYNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 XSRVASISLPTSCASA 112
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 25/159 (15%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
AL +++ +G+ + + G GSGKS LL + + T+G + +G
Sbjct: 24 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 83
Query: 118 CAYVSQEAWITNDTLRHNILFG-EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER-G 175
A+ E + + + F + F P R L A+ G D +R
Sbjct: 84 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAME-----FVGLDFDSFKDRVP 138
Query: 176 INLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214
LSGG+K+RVA+A + L+L P V L
Sbjct: 139 FFLSGGEKRRVAIASVIVHEP------DILILDEPLVGL 171
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 25/159 (15%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
AL +++ +G+ + + G GSGKS LL + + T+G + +G
Sbjct: 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81
Query: 118 CAYVSQEAWITNDTLRHNILFG-EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER-G 175
A+ E + + + F + F P R L A+ G D +R
Sbjct: 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAME-----FVGLDFDSFKDRVP 136
Query: 176 INLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214
LSGG+K+RVA+A + L+L P V L
Sbjct: 137 FFLSGGEKRRVAIASVIVHEP------DILILDEPLVGL 169
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 22/141 (15%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL----------------- 112
A+ D++ G+ + + G G GK+ L I T G++
Sbjct: 21 AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVP 80
Query: 113 SREGTCAYVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEI 171
+E A V Q A + T+ NI F P + ++ K + + L G +
Sbjct: 81 PKERDVAXVFQSYALYPHXTVYDNIAF--PLKLRKVPKQEIDKRVREVAEXL--GLTELL 136
Query: 172 GERGINLSGGQKQRVALARAL 192
+ LSGGQ+QRVAL RA+
Sbjct: 137 NRKPRELSGGQRQRVALGRAI 157
>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 223
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
VS P +SA
Sbjct: 97 NSRVASVSLPTSCASA 112
>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
pdb|2TGP|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2TPI|Z Chain Z, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3TPI|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|4TPI|Z Chain Z, The Refined 2.2-angstroms (0.22-nm) X-ray Crystal
Structure Of The Ternary Complex Formed By Bovine
Trypsinogen, Valine-valine And The Arg15 Analogue Of
Bovine Pancreatic Trypsin Inhibitor
pdb|1BTZ|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTX|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTW|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTP|A Chain A, Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4-
(Amidinophenoxy)-Carbonyl]phenyl]-2-Methyl-2-Propenoyl]-
N- Allylglycine Methanesulfonate To Bovine Trypsin,
Revealed By The Crystal Structure Of The Complex
pdb|1BTY|A Chain A, Crystal Structure Of Beta-Trypsin In Complex With
Benzamidine
pdb|1TGB|A Chain A, Crystal Structure Of Bovine Trypsinogen At 1.8 Angstroms
Resolution. Ii. Crystallographic Refinement, Refined
Crystal Structure And Comparison With Bovine Trypsin
pdb|1TGC|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TGN|A Chain A, Structure Of Bovine Trypsinogen At 1.9 Angstroms
Resolution
pdb|1TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TNG|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNH|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNI|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNJ|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNK|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNL|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|2TGA|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|2TGD|A Chain A, Lack Of The Transition State Stabilization Site Is A
Factor In The Inactivity Of Trypsinogen, A Serine
Protease Zymogen. Structure Of Dfp Inhibited Bovine
Trypsinogen At 2.1 Angstroms Resolution
pdb|2TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
Length = 229
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 46 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 102
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 103 NSRVASISLPTSCASA 118
>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Magnesium(Ii) Chelate
pdb|1G3C|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff Base
Iron(Iii) Chelate
pdb|1G3D|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Copper (Ii) Chelate
pdb|1G3E|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff-Base
Copper (Ii) Chelate
Length = 228
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 45 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 101
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 102 NSRVASISLPTSCASA 117
>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
Length = 237
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 54 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 110
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 111 NSRVASISLPTSCASA 126
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124
P+G++ I G GK+ L AI++Q + GTCA++ E
Sbjct: 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAG------GTCAFIDAE 111
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 177 NLSGGQKQRVALARAL 192
LSGG++QRVALARAL
Sbjct: 126 RLSGGERQRVALARAL 141
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 243
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 60 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 116
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 117 NSRVASISLPTSCASA 132
>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight
Into Structural Radiation Damage
Length = 223
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk
Type Protease Inhibitor And Its Interaction With Trypsin
pdb|1TPA|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2PTC|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1PPC|E Chain E, Geometry Of Binding Of The Benzamidine-and Arginine-based
Inhibitors
N-alpha-(2-naphthyl-sulphonyl-glycyl)-dl-p-
amidinophenylalanyl- Piperidine (napap) And
(2r,4r)-4-methyl-1-[n-alpha-(3-methyl-1,2,3,4-
Tetrahydro-8-quinolinesulphonyl)-l-arginyl]-2-piperidine
Carboxylic Acid (mqpa) To Human Alpha-thrombin: X-ray
Crystallographic Determination Of The Napap-trypsin
Complex And Modeling Of Napap- Thrombin And
Mqpa-thrombin
pdb|1PPE|E Chain E, The Refined 2.0 Angstroms X-Ray Crystal Structure Of The
Complex Formed Between Bovine Beta-Trypsin And Cmti-I, A
Trypsin Inhibitor From Squash Seeds (Cucurbita Maxima):
Topological Similarity Of The Squash Seed Inhibitors
With The Carboxypeptidase A Inhibitor From Potatoes
pdb|1PPH|E Chain E, Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of
M-Amidino-, P-Amidino-And P-Guanidino Phenylalanine To
Thrombin And Trypsin: X- Ray Crystal Structures Of Their
Trypsin Complexes And Modeling Of Their Thrombin
Complexes
pdb|1SMF|E Chain E, Studies On An Artificial Trypsin Inhibitor Peptide Derived
From The Mung Bean Inhibitor
pdb|1JRT|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1JRS|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1CE5|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzamidine
pdb|2BZA|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
pdb|1QCP|A Chain A, Crystal Structure Of The Rwj-51084 Bovine Pancreatic Beta-
Trypsin At 1.8 A
pdb|1SBW|A Chain A, Crystal Structure Of Mung Bean Inhibitor Lysine Active
Fragment Complex With Bovine Beta-Trypsin At 1.8a
Resolution
pdb|1YYY|1 Chain 1, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1SFI|A Chain A, High Resolution Structure Of A Potent, Cyclic Protease
Inhibitor From Sunflower Seeds
pdb|1TIO|A Chain A, High Packing Density Form Of Bovine Beta-trypsin In
Cyclohexane
pdb|2TIO|A Chain A, Low Packing Density Form Of Bovine Beta-Trypsin In
Cyclohexane
pdb|2BTC|E Chain E, Bovine Trypsin In Complex With Squash Seed Inhibitor
(Cucurbita Pepo Trypsin Inhibitor Ii)
pdb|3BTE|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta-Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTD|E Chain E, The Crystal Structures Of The Complexes Between The Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTF|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTG|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTH|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTK|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTM|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTQ|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTT|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTW|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|1QBN|A Chain A, Bovine Trypsin 2-[amino(Imino)methyl]-2-Hydroxyphenoxy]-6-
[3-(4,5-Dihydro-1h-Imidazol-2-Yl)phenoxy]pyridine-4-
Carboxylic Acid (Zk-806688) Complex
pdb|1QBO|A Chain A, Bovine Trypsin
7-[[6-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
2-Methyl-Benzimidazol-1-Yl]methyl]naphthalene-2-
Carboximidamid Zk-806711 Inhibitor Complex
pdb|1QB9|A Chain A, Bovine Trypsin
7-[[2-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
9h-Carbozol-9-Yl] Methyl]naphthalene-2-Carboximidamide
(Zk- 806450) Complex
pdb|1QB1|A Chain A, Bovine Trypsin With 1-[2-[5-[amino(imino)methyl]-2-
Hydroxyphenoxy]-6-[3-(4,
5-dihydro-1-methyl-1h-imidazol-2-
Yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid
(zk- 806974)
pdb|1QB6|A Chain A, Bovine Trypsin 3,3'-[3,5-Difluoro-4-Methyl-2, 6-
Pyridinediylbis(Oxy)]bis(Benzenecarboximidamide) (Zk-
805623) Complex
pdb|1QA0|A Chain A, Bovine Trypsin 2-Aminobenzimidazole Complex
pdb|1F2S|E Chain E, Crystal Structure Of The Complex Formed Between Bovine
Beta- Trypsin And Mcti-A, A Trypsin Inhibitor Of Squash
Family At 1.8 A Resolution
pdb|1D6R|A Chain A, Crystal Structure Of Cancer Chemopreventive Bowman-Birk
Inhibitor In Ternary Complex With Bovine Trypsin At 2.3
A Resolution. Structural Basis Of Janus-Faced Serine
Protease Inhibitor Specificity
pdb|1C9T|A Chain A, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|B Chain B, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|C Chain C, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|D Chain D, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|E Chain E, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|F Chain F, Complex Of Bdellastasin With Bovine Trypsin
pdb|1QL7|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1QL8|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1G9I|E Chain E, Crystal Structure Of Beta-Trysin Complex In Cyclohexane
pdb|1EJM|A Chain A, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|C Chain C, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|E Chain E, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1JIR|A Chain A, Crystal Structure Of Trypsin Complex With Amylamine In
Cyclohexane
pdb|1J8A|A Chain A, Crystal Structure Of Benzamidine Inhibited Bovine
Pancreatic Trypsin At 105k To 1.21a Resolution From
Laboratory Source With High Number Of Waters Modelled
pdb|1G36|A Chain A, Trypsin Inhibitor Complex
pdb|1K1P|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1O|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1N|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1M|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1L|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1J|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1I|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1EB2|A Chain A, Trypsin Inhibitor Complex (Bpo)
pdb|1GJ6|A Chain A, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1N6X|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1N6Y|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1OYQ|A Chain A, Trypsin Inhibitor Complex
pdb|1O2H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O2O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2P|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Q|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2R|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2S|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2T|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2U|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2V|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2W|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2X|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Y|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Z|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O30|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O31|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O32|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O33|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O34|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O35|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O36|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O37|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O38|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O39|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3A|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3B|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3C|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3D|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3E|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3F|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3G|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O3N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1NC6|A Chain A, Potent, Small Molecule Inhibitors Of Human Mast Cell
Tryptase. Anti-Asthmatic Action Of A Dipeptide-Based
Transition State Analogue Containing Benzothiazole
Ketone
pdb|1P2I|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2J|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2K|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OX1|A Chain A, Crystal Structure Of The Bovine Trypsin Complex With A
Synthetic 11 Peptide Inhibitor
pdb|1RXP|A Chain A, Structure Of Trypsin (Orthorhombic) With 1-(4-Tert-
Butylcarbamoyl- Piperazine-1-Carbonyl)-3-(3-Guanidino-
Propyl)-4-Oxo-Azetidine-2-Carboxylic Acid
pdb|1S0Q|A Chain A, Native Bovine Pancreatic Trypsin
pdb|1S0R|A Chain A, Bovine Pancreatic Trypsin Inhibited With Benzamidine At
Atomic Resolution
pdb|2A7H|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|1TX7|A Chain A, Bovine Trypsin Complexed With P-
Amidinophenylmethylphosphinic Acid (Ampa)
pdb|2BLV|A Chain A, Trypsin Before A High Dose X-Ray "burn"
pdb|2BLW|A Chain A, Trypsin After A High Dose X-Ray "burn"
pdb|1TX8|A Chain A, Bovine Trypsin Complexed With Amso
pdb|1Y3U|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3V|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3W|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3X|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3Y|A Chain A, Trypsin Inhibitor Complex
pdb|1YP9|A Chain A, Trypsin Inhibitor Complex
pdb|2AYW|A Chain A, Crystal Structure Of The Complex Formed Between Trypsin
And A Designed Synthetic Highly Potent Inhibitor In The
Presence Of Benzamidine At 0.97 A Resolution
pdb|2FI3|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser,
Cys38->ser) In Complex With Trypsin
pdb|2FX4|A Chain A, Bovine Trypsin Bound By 4-piperidinebutyrate To Make
Acylenzyme Complex
pdb|2FX6|A Chain A, Bovine Trypsin Complexed With 2-Aminobenzamidazole
pdb|2AGE|X Chain X, Succinyl-Aapr-Trypsin Acyl-Enzyme At 1.15 A Resolution
pdb|2AGG|X Chain X, Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
pdb|2AGI|X Chain X, The Leupeptin-Trypsin Covalent Complex At 1.14 A
Resolution
pdb|2AH4|X Chain X, Guanidinobenzoyl-Trypsin Acyl-Enzyme At 1.13 A Resolution
pdb|2G5N|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G5V|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G8T|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2F3C|E Chain E, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
pdb|2G81|E Chain E, Crystal Structure Of The Bowman-Birk Inhibitor From Vigna
Unguiculata Seeds In Complex With Beta-Trypsin At 1.55
Angstrons Resolution
pdb|2G55|A Chain A, Anomalous Substructure Of Trypsin (P3121)
pdb|2OTV|A Chain A, Crystal Structure Of The Complex Formed Between Bovine
Trypsin And Nicotinamide At 1.56 A Resolution
pdb|2J9N|A Chain A, Robotically Harvested Trypsin Complexed With Benzamidine
Containing Polypeptide Mediated Crystal Contacts
pdb|2OXS|A Chain A, Crytal Structure Of The Trypsin Complex With Benzamidine
At High Temperature (35 C)
pdb|2UUY|A Chain A, Structure Of A Tick Tryptase Inhibitor In Complex With
Bovine Trypsin
pdb|2ILN|A Chain A, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2ILN|B Chain B, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2CMY|A Chain A, Crystal Complex Between Bovine Trypsin And Veronica
Hederifolia Trypsin Inhibitor
pdb|1AQ7|A Chain A, Trypsin With Inhibitor Aeruginosin 98-b
pdb|1AUJ|A Chain A, Bovine Trypsin Complexed To Meta-Cyano-Benzylic Inhibitor
pdb|1AZ8|A Chain A, Bovine Trypsin Complexed To Bis-Phenylamidine Inhibitor
pdb|1BJU|A Chain A, Beta-Trypsin Complexed With Acpu
pdb|1BJV|A Chain A, Beta-Trypsin Complexed With Appu
pdb|1GBT|A Chain A, Structure Of An Acyl-Enzyme Intermediate During Catalysis:
(Guanidinobenzoyl) Trypsin
pdb|1MAX|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MAY|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MTS|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTU|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTV|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTW|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1TLD|A Chain A, Crystal Structure Of Bovine Beta-Trypsin At 1.5 Angstroms
Resolution In A Crystal Form With Low Molecular Packing
Density. Active Site Geometry, Ion Pairs And Solvent
Structure
pdb|1TPO|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPP|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPS|A Chain A, Atomic Structure Of The Trypsin-A90720a Complex: A Unified
Approach To Structure And Function
pdb|1TYN|A Chain A, Atomic Structure Of The Trypsin-cyclotheonamide A Complex:
Lessons For The Design Of Serine Protease Inhibitors
pdb|1XUF|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUG|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUH|A Chain A, Trypsin-Keto-Babim-Co+2, Ph 8.2
pdb|1XUI|A Chain A, Trypsin-Keto-Babim, Zn+2-Free, Ph 8.2
pdb|1XUJ|A Chain A, Trypsin-Keto-Babim-Zn+2, Ph 8.2
pdb|1XUK|A Chain A, Trypsin-Babim-Sulfate, Ph 5.9
pdb|2PLX|A Chain A, Trypsin Complexed To A Synthetic Peptide From Veronica
Hederifolia
pdb|2PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3PTB|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|3PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1C1N|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1O|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1P|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1Q|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1R|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1T|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2D|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2E|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2F|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2G|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2H|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2I|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2J|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2K|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2L|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2M|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5P|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Q|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5R|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5S|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5T|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5U|A Chain A, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5V|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GHZ|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI0|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI1|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI2|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI3|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI4|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI5|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI6|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2O9Q|A Chain A, The Crystal Structure Of Bovine Trypsin Complexed With A
Small Inhibition Peptide Orb2k
pdb|2QN5|T Chain T, Crystal Structure And Functional Study Of The Bowman-Birk
Inhibitor From Rice Bran In Complex With Bovine Trypsin
pdb|2QYI|A Chain A, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|C Chain C, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2ZDK|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDL|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDM|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDN|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFS|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFT|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZHD|A Chain A, Exploring Trypsin S3 Pocket
pdb|3D65|E Chain E, Crystal Structure Of Textilinin-1, A Kunitz-Type Serine
Protease Inhibitor From The Australian Common Brown
Snake Venom, In Complex With Trypsin
pdb|3E8L|A Chain A, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|3E8L|B Chain B, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|2ZQ1|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZQ2|A Chain A, Exploring Trypsin S3 Pocket
pdb|3ITI|A Chain A, Structure Of Bovine Trypsin With The Mad Triangle B3c
pdb|3GY2|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY3|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY4|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY5|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY6|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Bis-Benzamidines Diminazene And Pentamidine
pdb|3GY7|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY8|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3AAS|A Chain A, Bovine Beta-Trypsin Bound To Meta-Guanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAU|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diguanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|B Chain B, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3M35|A Chain A, Trypsin In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3MFJ|A Chain A, Bovine Trypsin At 0.8 A Resolution, Restrained Refinement
pdb|3MI4|A Chain A, Bovine Trypsin At 0.8 A Resolution, Non-Restrained
Refinemen
pdb|3I29|A Chain A, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
pdb|3A7T|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide
pdb|3A7V|A Chain A, Crystal Structure Of Trypsin Complexed With
3-Formylbenzimidamide
pdb|3A7W|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((Tetrahydro-2h-
Pyran-2-Yloxyimino)methyl)benzimidamide (Soaking 4hours)
pdb|3A7X|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
45seconds)
pdb|3A7Y|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
3-Yloxyimino)methyl)benzimidamide (Soaking 2hours)
pdb|3A7Z|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
4-Yloxyimino)methyl)benzimidamide (Soaking 3hours)
pdb|3A80|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic Acid
(Soaking 40seconds)
pdb|3A81|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 8
Hours)
pdb|3A82|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid
pdb|3A83|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide
pdb|3A84|A Chain A, Crystal Structure Of Trypsin Complexed With(E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 5
Seconds)
pdb|3A85|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 15
Seconds)
pdb|3A86|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 30
Seconds)
pdb|3A87|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 5
Minutes)
pdb|3A88|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 30
Minutes)
pdb|3A89|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 4
Hours)
pdb|3A8A|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide And Aniline
pdb|3A8B|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((4-
Bromophenylimino)methyl)benzimidamide
pdb|3A8C|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
With Mixture Of
[(E)-2-(4-Carbamimidoylbenzylideneaminooxy)acetic Acid]
And [(E)-2-
(4-Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic
Acid])
pdb|3A8D|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Under
Aniline-Free Condition)
pdb|3LJJ|A Chain A, Bovine Trypsin In Complex With Ub-Thr 10
pdb|3LJO|A Chain A, Bovine Trypsin In Complex With Ub-Thr 11
pdb|2XTT|B Chain B, Bovine Trypsin In Complex With Evolutionary Enhanced
Schistocerca Gregaria Protease Inhibitor 1 (Sgpi-1-P02)
pdb|3NK8|A Chain A, Trypsin In Complex With Fluorine-Containing Fragment
pdb|3NKK|A Chain A, Trypsin In Complex With Fluorine Containing Fragment
pdb|3M7Q|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Pancreatic Trypsin
pdb|3RDZ|A Chain A, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|B Chain B, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3ATI|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3ATK|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3ATL|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamidine
pdb|3ATM|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXA|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3RXB|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobutanoic Acid
pdb|3RXC|A Chain A, Crystal Structure Of Trypsin Complexed With
2-Aminopyridine
pdb|3RXD|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3RXE|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide
pdb|3RXF|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminopyridine
pdb|3RXG|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminocyclohexanol
pdb|3RXH|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Imidazol-4-Yl) Ethanamine
pdb|3RXI|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXJ|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobenzoic Acid
pdb|3RXK|A Chain A, Crystal Structure Of Trypsin Complexed With Methyl
4-Amino-1-Methyl- Pyrrolidine-2-Carboxylate
pdb|3RXL|A Chain A, Crystal Structure Of Trypsin Complexed With
(2,5-Dimethyl-3-Furyl) Methanamine
pdb|3RXM|A Chain A, Crystal Structure Of Trypsin Complexed With
[2-(2-Thienyl)thiazol-4- Yl]methanamine
pdb|3RXO|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Pyrrol-1-Ylphenyl) Methanamine
pdb|3RXP|A Chain A, Crystal Structure Of Trypsin Complexed With
(1,5-Dimethylpyrazol-3- Yl)methanamine
pdb|3RXQ|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F01
And F05, Cocktail Experiment)
pdb|3RXR|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine (F01 And F03, Cocktail Experiment)
pdb|3RXS|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine (F04 And A06, Cocktail
Experiment)
pdb|3RXT|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamin (F04 And F03, Cocktail
Experiment)
pdb|3RXU|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And A06, Cocktail Experiment)
pdb|3RXV|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And F03, Cocktail Experiment)
pdb|3T25|A Chain A, Tmao-Grown Orthorhombic Trypsin (Bovine)
pdb|3T26|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Sarcosine
pdb|3T27|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Betaine
pdb|3T28|A Chain A, Tmao-Grown Trypsin (Bovine)-Previously Unreported
Tetragonal Crystal Form
pdb|3T29|A Chain A, Tmao-Grown Trigonal Trypsin (Bovine)
pdb|4AB8|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4AB9|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABA|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABB|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABD|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABE|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABF|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABG|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABH|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABI|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Pta)sfti-1(1,14), That Was 1,4-
Disubstituted With A 1,2,3-Trizol To Mimic A Trans Amide
Bond
pdb|4ABJ|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Ica)sfti-1(1,14), That Was 1,5-
Disubstituted With 1,2,3-Trizol To Mimic A Cis Amide
Bond
pdb|3VPK|A Chain A, Crystal Structure Of 6-guanidinohexanoyl Trypsin
pdb|3UNR|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Trypsin At 1.2a Resolution
pdb|3RU4|T Chain T, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
pdb|1C1S|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|4I8G|A Chain A, Bovine Trypsin At 0.8 Resolution
pdb|4I8H|A Chain A, Bovine Trypsin At 0.75 Resolution
pdb|4I8J|A Chain A, Bovine Trypsin At 0.87 A Resolution
pdb|4I8K|A Chain A, Bovine Trypsin At 0.85 Resolution
pdb|4I8L|A Chain A, Bovine Trypsin At 0.87 Resolution
pdb|4AOQ|A Chain A, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|B Chain B, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|C Chain C, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOR|A Chain A, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|B Chain B, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|C Chain C, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
Length = 223
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine
Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT
REFINEMENT
Length = 223
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247
pdb|1F0U|A Chain A, Bovine Trypsin Complexed With Rpr128515
pdb|1EZX|C Chain C, Crystal Structure Of A Serpin:protease Complex
pdb|1LQE|A Chain A, Crystal Structure Of Trypsin In Complex With 79.
pdb|1UTN|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTO|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-ray Structures And Association Constant Measurements
pdb|1UTP|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTQ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|2BY5|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY6|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY7|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY8|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY9|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BYA|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 243
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 60 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 116
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 117 NSRVASISLPTSCASA 132
>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase)
Length = 223
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi
pdb|1ZR0|A Chain A, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
pdb|1ZR0|C Chain C, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
Length = 223
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Sswi)bt.B4
Length = 223
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin
Length = 223
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCXKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai)
Bt.D1
pdb|1V2V|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssai)
Bt.C1
pdb|1V2W|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssai)bt.B4
Length = 223
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.B4
pdb|1V2P|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.A4
Length = 223
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Ssfi.Glu)bt.D1
pdb|1V2T|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(ssfi.glu)bt.b4
Length = 223
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri)
Bt.C1
pdb|1V2R|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssri)bt.B4
Length = 223
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 NSRVASISLPTSCASA 112
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL 105
E N+ +D++F P G L + G GSGKS L+ IL+ +
Sbjct: 655 EHNLRGIDVSF--PLGVLTSVTGVSGSGKSTLVNDILAAV 692
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 18/104 (17%)
Query: 140 EPFEP----QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
E FEP RY +TL + L +G+ LSGG+ QRV LA L
Sbjct: 832 EFFEPIAGVHRYLRTLVDVGLG----------YVRLGQPAPTLSGGEAQRVKLASELQKR 881
Query: 196 SFEQQTFHFLVLLCPCVSLQSILLMEEVNVYVSKPIDKSSAVSI 239
S + + +L P L + + +NV ++ +DK + V +
Sbjct: 882 STGRTVY---ILDEPTTGLHFDDIRKLLNV-INGLVDKGNTVIV 921
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 177 NLSGGQKQRVALARAL 192
+LSGGQ QRVA+ARAL
Sbjct: 138 SLSGGQAQRVAIARAL 153
>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In
Complex With Trypsin
pdb|2FTL|E Chain E, Crystal Structure Of Trypsin Complexed With Bpti At 100k
Length = 223
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVYVSKPIDKSSA 236
+S P +SA
Sbjct: 97 XSRVASISLPTSCASA 112
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 177 NLSGGQKQRVALARAL 192
+LSGGQ QRVA+ARAL
Sbjct: 159 SLSGGQAQRVAIARAL 174
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLY 99
L +I+ P+GKLV + G GSGKS+L +
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAF 62
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114
R L +++ P G V + G GSGKS L+ +L ++ A KL R
Sbjct: 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL--YKALAQKLHR 379
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 168 QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208
Q +GE IN+ G +Q V A+ + +F+++T++ ++L
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIML 87
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 168 QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208
Q +GE IN+ G +Q V A+ + +F+++T++ ++L
Sbjct: 47 QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIML 87
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 177 NLSGGQKQRVALARAL 192
LSGGQ+QRVAL RA+
Sbjct: 139 ELSGGQRQRVALGRAI 154
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLY 99
L +I+ P+GKLV + G GSGKS+L +
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAF 62
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114
R L +++ P G V + G GSGKS L+ +L ++ A KL R
Sbjct: 636 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL--YKALAQKLHR 681
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLY 99
L +I+ P+GKLV + G GSGKS+L +
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAF 62
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114
R L +++ P G V + G GSGKS L+ +L ++ A KL R
Sbjct: 636 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL--YKALAQKLHR 681
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220
H G Q +GE IN+ G +Q ++ ++++ S+ T + ++L + L+S +
Sbjct: 40 HCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIML---IKLKSAASL 96
Query: 221 EEVNVY-VSKPIDKSSA 236
+ V +S P +SA
Sbjct: 97 XDSRVASISLPTSCASA 113
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 63 EDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS--------- 113
E +E I ++D+ KG +G+ G G GK+ L+ +++ + G LS
Sbjct: 126 EILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERT 185
Query: 114 REGTCAYVSQEAWITNDTLRHNILFGEPFEP 144
REG Y E + + +++FG+ EP
Sbjct: 186 REGNDLY--HEMKDSGVISKTSMVFGQMNEP 214
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 28.1 bits (61), Expect = 5.4, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102
R L DI+ P+ LV G GSGKS+L + L
Sbjct: 22 RQHNLKDISVKVPRDALVVFTGVSGSGKSSLAFGTL 57
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 61 KAEDVERNIALVDINFFAP--KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS----- 113
+ E +E I +VD+ AP KG +G+ G G GK+ L+ ++ + G +S
Sbjct: 131 EVEILETGIKVVDL--LAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGV 188
Query: 114 ----REGTCAYVSQEAWITNDTLRHNILFGEPFEP 144
REG Y E + + ++FG+ EP
Sbjct: 189 GERTREGNDLY--HEMKDSGVISKTAMVFGQMNEP 221
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-TCAYVSQE 124
P G++V I G SGK+ L +++ + REG TCA++ E
Sbjct: 57 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-------REGKTCAFIDAE 96
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-TCAYVSQE 124
P G++V I G SGK+ L +++ + REG TCA++ E
Sbjct: 58 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-------REGKTCAFIDAE 97
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-TCAYVSQE 124
P G++V I G SGK+ L +++ + REG TCA++ E
Sbjct: 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-------REGKTCAFIDAE 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,758,693
Number of Sequences: 62578
Number of extensions: 283660
Number of successful extensions: 947
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 201
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)