Query psy850
Match_columns 280
No_of_seqs 387 out of 3761
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 20:31:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054|consensus 100.0 1.7E-39 3.7E-44 345.3 16.4 173 2-215 500-675 (1381)
2 TIGR02868 CydC thiol reductant 100.0 2.2E-38 4.9E-43 313.5 16.6 142 70-217 350-504 (529)
3 COG1116 TauB ABC-type nitrate/ 100.0 1.3E-38 2.9E-43 286.4 12.9 149 68-229 16-176 (248)
4 COG1126 GlnQ ABC-type polar am 100.0 5.9E-39 1.3E-43 283.4 9.5 152 67-227 14-180 (240)
5 KOG0058|consensus 100.0 2.4E-38 5.2E-43 316.6 14.5 162 14-216 462-637 (716)
6 PRK11174 cysteine/glutathione 100.0 1.7E-37 3.7E-42 310.7 18.0 141 69-216 364-518 (588)
7 COG3842 PotA ABC-type spermidi 100.0 2.3E-37 4.9E-42 292.5 13.8 136 68-216 18-169 (352)
8 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 8.4E-37 1.8E-41 311.3 18.4 142 69-216 467-621 (686)
9 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.8E-37 8.2E-42 279.3 13.1 139 70-216 19-172 (254)
10 PLN03130 ABC transporter C fam 100.0 1.3E-36 2.7E-41 333.3 17.5 160 16-216 613-773 (1622)
11 COG2274 SunT ABC-type bacterio 100.0 2.2E-36 4.8E-41 308.4 16.7 162 14-217 468-643 (709)
12 TIGR00958 3a01208 Conjugate Tr 100.0 4.5E-36 9.7E-41 307.6 18.1 161 15-216 476-650 (711)
13 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.2E-36 6.8E-41 308.0 16.5 142 69-216 493-648 (710)
14 PRK10790 putative multidrug tr 100.0 6.9E-36 1.5E-40 299.6 18.4 142 69-216 355-509 (592)
15 COG1120 FepC ABC-type cobalami 100.0 1.8E-36 3.9E-41 275.7 12.8 142 68-217 15-172 (258)
16 PRK11176 lipid transporter ATP 100.0 6E-36 1.3E-40 299.1 17.2 143 69-217 357-514 (582)
17 COG3839 MalK ABC-type sugar tr 100.0 2.8E-36 6E-41 283.8 13.8 135 70-217 18-167 (338)
18 COG1117 PstB ABC-type phosphat 100.0 2.2E-36 4.7E-41 266.7 12.2 154 68-230 20-196 (253)
19 PLN03232 ABC transporter C fam 100.0 5.6E-36 1.2E-40 326.9 17.7 160 16-216 613-773 (1495)
20 COG1136 SalX ABC-type antimicr 100.0 3.4E-36 7.4E-41 269.2 12.0 139 68-216 18-175 (226)
21 TIGR03375 type_I_sec_LssB type 100.0 1.3E-35 2.9E-40 302.8 17.0 143 69-217 479-635 (694)
22 COG1132 MdlB ABC-type multidru 100.0 1.4E-35 3.1E-40 296.1 16.8 144 69-218 343-500 (567)
23 TIGR01193 bacteriocin_ABC ABC- 100.0 1.6E-35 3.4E-40 302.9 17.2 143 69-217 488-645 (708)
24 TIGR02857 CydD thiol reductant 100.0 2.3E-35 5.1E-40 292.0 17.9 143 69-217 336-492 (529)
25 TIGR02203 MsbA_lipidA lipid A 100.0 2E-35 4.4E-40 294.2 17.4 144 69-218 346-504 (571)
26 cd03250 ABCC_MRP_domain1 Domai 100.0 6.1E-35 1.3E-39 255.7 15.7 143 69-217 19-161 (204)
27 COG1125 OpuBA ABC-type proline 100.0 9.4E-36 2E-40 268.5 10.0 141 68-219 14-171 (309)
28 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-35 2.4E-40 273.7 10.3 142 67-216 14-170 (345)
29 PRK11160 cysteine/glutathione 100.0 9.9E-35 2.1E-39 291.0 17.6 142 69-217 354-509 (574)
30 KOG0055|consensus 100.0 2.9E-35 6.3E-40 308.1 13.6 159 17-216 987-1159(1228)
31 PRK13657 cyclic beta-1,2-gluca 100.0 1.4E-34 3E-39 290.1 17.7 143 69-217 349-505 (588)
32 COG1135 AbcC ABC-type metal io 100.0 4E-35 8.7E-40 270.3 12.6 136 68-216 19-174 (339)
33 TIGR02204 MsbA_rel ABC transpo 100.0 1.1E-34 2.5E-39 289.3 16.7 143 69-217 354-510 (576)
34 KOG0055|consensus 100.0 4E-35 8.6E-40 307.1 13.5 162 14-216 347-522 (1228)
35 PTZ00265 multidrug resistance 100.0 8.4E-35 1.8E-39 316.6 16.5 161 16-217 1164-1392(1466)
36 COG3638 ABC-type phosphate/pho 100.0 6.6E-35 1.4E-39 260.4 12.4 174 66-248 15-230 (258)
37 COG1127 Ttg2A ABC-type transpo 100.0 8.4E-35 1.8E-39 260.4 13.0 144 68-220 21-182 (263)
38 COG2884 FtsE Predicted ATPase 100.0 6E-35 1.3E-39 253.5 11.4 157 61-230 8-184 (223)
39 TIGR01842 type_I_sec_PrtD type 100.0 3.9E-34 8.5E-39 284.6 18.2 143 69-217 332-488 (544)
40 KOG0057|consensus 100.0 1.5E-34 3.2E-39 281.9 13.9 154 68-228 365-532 (591)
41 TIGR00957 MRP_assoc_pro multi 100.0 3.7E-34 7.9E-39 313.1 17.0 142 69-216 652-793 (1522)
42 PRK10789 putative multidrug tr 100.0 7.8E-34 1.7E-38 284.2 17.5 143 69-217 329-485 (569)
43 COG4988 CydD ABC-type transpor 100.0 8.6E-34 1.9E-38 278.8 16.1 150 60-216 326-489 (559)
44 TIGR01271 CFTR_protein cystic 100.0 1.3E-33 2.9E-38 308.1 19.0 143 68-216 439-581 (1490)
45 TIGR01846 type_I_sec_HlyB type 100.0 1.5E-33 3.3E-38 287.9 17.3 143 69-217 471-627 (694)
46 cd03252 ABCC_Hemolysin The ABC 100.0 2.5E-33 5.4E-38 250.5 16.0 143 69-217 16-172 (237)
47 cd03291 ABCC_CFTR1 The CFTR su 100.0 8.4E-34 1.8E-38 262.2 13.0 189 17-217 3-193 (282)
48 cd03244 ABCC_MRP_domain2 Domai 100.0 3.7E-33 8E-38 246.7 16.1 145 69-219 18-175 (221)
49 COG0410 LivF ABC-type branched 100.0 1.9E-33 4.1E-38 250.3 13.7 170 66-247 14-218 (237)
50 COG4618 ArpD ABC-type protease 100.0 9.9E-34 2.1E-38 274.2 12.9 152 59-216 334-505 (580)
51 PRK11650 ugpC glycerol-3-phosp 100.0 2.2E-33 4.7E-38 267.2 14.8 136 69-217 18-168 (356)
52 COG1124 DppF ABC-type dipeptid 100.0 1E-33 2.2E-38 253.7 11.1 153 69-233 21-191 (252)
53 TIGR01192 chvA glucan exporter 100.0 5.8E-33 1.3E-37 278.9 17.6 142 69-216 349-504 (585)
54 cd03290 ABCC_SUR1_N The SUR do 100.0 6.4E-33 1.4E-37 245.2 15.8 143 69-217 15-174 (218)
55 cd03254 ABCC_Glucan_exporter_l 100.0 8E-33 1.7E-37 245.8 15.7 143 69-217 17-173 (229)
56 PLN03232 ABC transporter C fam 100.0 3E-33 6.5E-38 305.6 15.4 142 69-216 1250-1404(1495)
57 PRK09452 potA putrescine/sperm 100.0 5.1E-33 1.1E-37 266.3 15.1 136 69-217 28-178 (375)
58 PLN03130 ABC transporter C fam 100.0 3.9E-33 8.5E-38 305.9 16.2 142 69-216 1253-1407(1622)
59 PRK11432 fbpC ferric transport 100.0 7.7E-33 1.7E-37 263.0 15.7 137 69-218 20-171 (351)
60 cd03245 ABCC_bacteriocin_expor 100.0 1.3E-32 2.7E-37 243.2 15.9 154 69-228 18-185 (220)
61 TIGR03265 PhnT2 putative 2-ami 100.0 6.6E-33 1.4E-37 263.5 14.6 136 69-217 18-168 (353)
62 cd03251 ABCC_MsbA MsbA is an e 100.0 1.5E-32 3.3E-37 244.8 15.8 143 69-217 16-172 (234)
63 TIGR00960 3a0501s02 Type II (G 100.0 8.9E-33 1.9E-37 243.7 13.8 146 69-227 17-182 (216)
64 cd03253 ABCC_ATM1_transporter 100.0 2E-32 4.4E-37 244.3 16.1 143 69-217 15-171 (236)
65 TIGR02314 ABC_MetN D-methionin 100.0 1.1E-32 2.4E-37 261.2 14.4 136 69-217 19-174 (343)
66 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1E-32 2.2E-37 243.4 13.2 150 69-228 18-185 (218)
67 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.7E-32 3.7E-37 245.3 14.6 143 69-217 17-173 (238)
68 cd03248 ABCC_TAP TAP, the Tran 100.0 3.3E-32 7.1E-37 241.7 15.8 146 69-220 28-187 (226)
69 cd03259 ABC_Carb_Solutes_like 100.0 1E-32 2.2E-37 242.9 12.4 145 69-226 14-173 (213)
70 cd03261 ABC_Org_Solvent_Resist 100.0 1.5E-32 3.3E-37 245.4 13.6 137 69-218 14-171 (235)
71 PTZ00243 ABC transporter; Prov 100.0 1.5E-32 3.3E-37 300.6 16.4 143 69-217 1324-1480(1560)
72 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.7E-32 3.7E-37 242.8 12.9 146 69-227 18-175 (220)
73 TIGR03258 PhnT 2-aminoethylpho 100.0 2.2E-32 4.7E-37 260.8 14.4 137 69-218 19-172 (362)
74 TIGR00957 MRP_assoc_pro multi 100.0 2.2E-32 4.8E-37 299.1 16.1 143 69-217 1300-1455(1522)
75 cd03226 ABC_cobalt_CbiO_domain 100.0 2.7E-32 5.9E-37 239.1 13.0 147 68-228 13-171 (205)
76 cd03288 ABCC_SUR2 The SUR doma 100.0 7.2E-32 1.6E-36 244.9 16.2 143 69-217 35-190 (257)
77 PRK11607 potG putrescine trans 100.0 5.7E-32 1.2E-36 259.3 16.3 137 69-218 33-184 (377)
78 TIGR01186 proV glycine betaine 100.0 1.5E-32 3.3E-37 262.0 12.2 139 67-218 5-164 (363)
79 PRK14257 phosphate ABC transpo 100.0 6.1E-32 1.3E-36 254.7 16.1 137 69-218 96-260 (329)
80 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.7E-32 1.5E-36 248.7 15.9 144 69-219 18-174 (275)
81 PRK10851 sulfate/thiosulfate t 100.0 4.9E-32 1.1E-36 257.6 15.4 136 69-217 16-170 (353)
82 cd03235 ABC_Metallic_Cations A 100.0 2.9E-32 6.2E-37 240.0 12.7 148 68-228 12-177 (213)
83 cd03296 ABC_CysA_sulfate_impor 100.0 4.7E-32 1E-36 243.0 14.2 140 69-218 16-171 (239)
84 COG4987 CydC ABC-type transpor 100.0 1.7E-32 3.7E-37 267.2 12.2 162 17-220 336-511 (573)
85 PRK11000 maltose/maltodextrin 100.0 4.6E-32 9.9E-37 259.1 14.5 137 69-218 17-168 (369)
86 cd03301 ABC_MalK_N The N-termi 100.0 4.6E-32 1E-36 238.4 13.4 146 69-227 14-174 (213)
87 PRK13631 cbiO cobalt transport 100.0 1.2E-31 2.7E-36 251.7 16.8 164 8-217 12-210 (320)
88 PRK11629 lolD lipoprotein tran 100.0 7.9E-32 1.7E-36 240.7 14.7 146 69-227 23-189 (233)
89 cd03265 ABC_DrrA DrrA is the A 100.0 4.2E-32 9.2E-37 240.3 12.8 146 69-227 14-175 (220)
90 COG1137 YhbG ABC-type (unclass 100.0 1.2E-33 2.6E-38 247.3 2.7 154 66-227 15-183 (243)
91 TIGR01166 cbiO cobalt transpor 100.0 2.8E-32 6.1E-37 236.3 11.3 147 68-227 5-171 (190)
92 TIGR02211 LolD_lipo_ex lipopro 100.0 1.1E-31 2.3E-36 237.4 14.9 137 69-218 19-176 (221)
93 cd03223 ABCD_peroxisomal_ALDP 100.0 7.6E-32 1.6E-36 230.2 13.4 110 69-218 15-126 (166)
94 TIGR02673 FtsE cell division A 100.0 5.9E-32 1.3E-36 237.9 13.0 147 69-228 16-182 (214)
95 cd03219 ABC_Mj1267_LivG_branch 100.0 5.6E-32 1.2E-36 241.4 13.1 150 69-227 14-187 (236)
96 cd03225 ABC_cobalt_CbiO_domain 100.0 4.7E-32 1E-36 238.1 12.2 147 68-227 14-178 (211)
97 KOG0056|consensus 100.0 1.9E-32 4.1E-37 264.4 10.5 159 15-216 535-707 (790)
98 COG1122 CbiO ABC-type cobalt t 100.0 7E-32 1.5E-36 243.5 13.6 151 69-232 18-187 (235)
99 cd03257 ABC_NikE_OppD_transpor 100.0 9.2E-32 2E-36 238.3 14.0 141 69-218 19-180 (228)
100 PRK13637 cbiO cobalt transport 100.0 9.7E-32 2.1E-36 248.3 14.7 136 69-217 21-178 (287)
101 cd03266 ABC_NatA_sodium_export 100.0 6.2E-32 1.3E-36 238.4 12.7 145 69-226 19-179 (218)
102 TIGR02315 ABC_phnC phosphonate 100.0 1.3E-31 2.7E-36 240.1 14.9 142 69-218 16-180 (243)
103 PRK13537 nodulation ABC transp 100.0 1.1E-31 2.3E-36 250.4 14.9 136 69-217 21-172 (306)
104 cd03269 ABC_putative_ATPase Th 100.0 7.2E-32 1.6E-36 237.0 12.6 139 68-219 13-164 (210)
105 cd03262 ABC_HisP_GlnQ_permease 100.0 8.5E-32 1.8E-36 236.5 13.1 138 69-219 14-171 (213)
106 cd03260 ABC_PstB_phosphate_tra 100.0 9.8E-32 2.1E-36 238.8 13.5 147 69-228 14-186 (227)
107 cd03224 ABC_TM1139_LivF_branch 100.0 8E-32 1.7E-36 238.1 12.8 146 69-226 14-175 (222)
108 PRK13647 cbiO cobalt transport 100.0 1.3E-31 2.8E-36 245.8 14.4 136 69-217 19-172 (274)
109 cd03268 ABC_BcrA_bacitracin_re 100.0 7.6E-32 1.6E-36 236.5 12.2 138 69-220 14-163 (208)
110 PRK10247 putative ABC transpor 100.0 2.2E-31 4.7E-36 237.1 15.1 148 69-228 21-182 (225)
111 cd03292 ABC_FtsE_transporter F 100.0 6.9E-32 1.5E-36 237.2 11.7 147 69-228 15-181 (214)
112 PRK11153 metN DL-methionine tr 100.0 1.1E-31 2.3E-36 254.2 13.8 136 69-217 19-174 (343)
113 cd03258 ABC_MetN_methionine_tr 100.0 1.3E-31 2.8E-36 238.9 13.5 136 69-217 19-174 (233)
114 cd03263 ABC_subfamily_A The AB 100.0 9.4E-32 2E-36 237.6 12.5 147 68-227 15-177 (220)
115 cd03218 ABC_YhbG The ABC trans 100.0 1.2E-31 2.5E-36 238.8 13.0 137 69-218 14-168 (232)
116 PRK13650 cbiO cobalt transport 100.0 1.9E-31 4E-36 245.4 14.8 136 69-217 21-174 (279)
117 COG1131 CcmA ABC-type multidru 100.0 5.7E-32 1.2E-36 251.2 11.5 152 68-232 18-185 (293)
118 PRK11831 putative ABC transpor 100.0 1.7E-31 3.8E-36 244.0 14.4 137 69-218 21-178 (269)
119 TIGR01288 nodI ATP-binding ABC 100.0 1.5E-31 3.2E-36 248.7 14.2 136 69-217 18-169 (303)
120 PRK11247 ssuB aliphatic sulfon 100.0 3.1E-31 6.7E-36 241.8 16.0 133 69-217 26-167 (257)
121 PRK09536 btuD corrinoid ABC tr 100.0 2E-31 4.3E-36 257.3 15.4 136 69-217 17-173 (402)
122 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2E-31 4.3E-36 238.6 14.1 138 69-219 15-168 (236)
123 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.2E-31 9.1E-36 231.9 15.9 136 69-228 22-170 (207)
124 PRK11248 tauB taurine transpor 100.0 2E-31 4.3E-36 242.2 14.1 137 69-218 15-163 (255)
125 TIGR00972 3a0107s01c2 phosphat 100.0 2.4E-31 5.3E-36 239.5 14.4 137 69-218 15-179 (247)
126 PRK10908 cell division protein 100.0 3.1E-31 6.7E-36 235.1 14.9 137 69-218 16-172 (222)
127 PRK13635 cbiO cobalt transport 100.0 2.7E-31 5.9E-36 244.4 14.9 136 69-217 21-174 (279)
128 PTZ00265 multidrug resistance 100.0 1.4E-31 3E-36 291.6 15.2 142 69-216 399-612 (1466)
129 PRK14273 phosphate ABC transpo 100.0 3E-31 6.6E-36 239.8 14.9 140 69-219 21-186 (254)
130 PRK14248 phosphate ABC transpo 100.0 3.3E-31 7.1E-36 241.8 14.8 144 69-219 35-200 (268)
131 PRK13634 cbiO cobalt transport 100.0 3E-31 6.5E-36 245.4 14.7 137 69-218 21-180 (290)
132 cd03256 ABC_PhnC_transporter A 100.0 2.2E-31 4.7E-36 238.0 13.2 148 68-228 14-189 (241)
133 PRK14242 phosphate transporter 100.0 2.9E-31 6.4E-36 239.5 14.1 140 69-219 20-185 (253)
134 cd03264 ABC_drug_resistance_li 100.0 1.7E-31 3.8E-36 234.7 12.1 135 69-217 14-164 (211)
135 PRK13646 cbiO cobalt transport 100.0 4.1E-31 8.9E-36 243.9 15.1 136 69-217 21-179 (286)
136 PRK14250 phosphate ABC transpo 100.0 5.5E-31 1.2E-35 236.8 15.4 135 69-217 17-165 (241)
137 PRK14259 phosphate ABC transpo 100.0 6.5E-31 1.4E-35 240.4 15.8 151 69-228 27-199 (269)
138 PRK13536 nodulation factor exp 100.0 4.4E-31 9.4E-36 250.0 15.0 141 67-220 53-209 (340)
139 TIGR01188 drrA daunorubicin re 100.0 1.8E-31 3.9E-36 248.0 12.1 137 68-217 6-158 (302)
140 TIGR01271 CFTR_protein cystic 100.0 3.7E-31 8E-36 289.1 16.5 142 69-217 1233-1387(1490)
141 PRK10584 putative ABC transpor 100.0 4.8E-31 1E-35 234.5 14.3 138 69-219 24-182 (228)
142 PRK13651 cobalt transporter AT 100.0 6.5E-31 1.4E-35 245.2 15.7 136 69-217 21-199 (305)
143 PTZ00243 ABC transporter; Prov 100.0 2.7E-31 5.8E-36 290.9 14.9 144 67-216 672-815 (1560)
144 PRK10744 pstB phosphate transp 100.0 6.2E-31 1.3E-35 239.0 14.8 139 69-218 27-191 (260)
145 PRK13643 cbiO cobalt transport 100.0 7.2E-31 1.6E-35 242.6 15.4 136 69-217 20-178 (288)
146 TIGR03608 L_ocin_972_ABC putat 100.0 2.7E-31 5.8E-36 232.2 11.8 139 68-219 11-170 (206)
147 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.8E-31 8.3E-36 237.6 13.1 136 69-217 15-169 (242)
148 PRK11300 livG leucine/isoleuci 100.0 8.4E-31 1.8E-35 236.6 15.2 143 69-219 19-189 (255)
149 PRK13632 cbiO cobalt transport 100.0 5.9E-31 1.3E-35 240.8 14.2 136 69-217 23-176 (271)
150 COG4525 TauB ABC-type taurine 100.0 1E-31 2.2E-36 234.7 8.6 138 68-218 18-167 (259)
151 TIGR03410 urea_trans_UrtE urea 100.0 4.5E-31 9.9E-36 234.9 13.1 147 69-227 14-175 (230)
152 PRK11264 putative amino-acid A 100.0 4.4E-31 9.5E-36 237.8 13.0 137 69-218 17-179 (250)
153 PRK13641 cbiO cobalt transport 100.0 7.6E-31 1.6E-35 242.2 14.6 137 69-218 21-180 (287)
154 PRK10575 iron-hydroxamate tran 100.0 1.1E-30 2.4E-35 238.0 15.5 137 69-218 25-182 (265)
155 COG3840 ThiQ ABC-type thiamine 100.0 1.9E-31 4.2E-36 230.6 9.8 141 73-226 17-172 (231)
156 PRK10895 lipopolysaccharide AB 100.0 9E-31 2E-35 234.8 14.6 137 69-218 17-172 (241)
157 TIGR03522 GldA_ABC_ATP gliding 100.0 7.5E-31 1.6E-35 243.9 14.4 136 69-217 16-167 (301)
158 cd03247 ABCC_cytochrome_bd The 100.0 7E-31 1.5E-35 225.8 13.1 105 69-217 16-132 (178)
159 PRK14269 phosphate ABC transpo 100.0 9.6E-31 2.1E-35 235.7 14.6 139 69-218 16-177 (246)
160 PRK13644 cbiO cobalt transport 100.0 7.9E-31 1.7E-35 240.6 14.3 136 69-217 16-170 (274)
161 PRK13636 cbiO cobalt transport 100.0 9E-31 1.9E-35 241.3 14.6 136 69-217 20-175 (283)
162 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-30 2.6E-35 229.4 14.7 142 73-227 16-172 (211)
163 PRK14235 phosphate transporter 100.0 1.1E-30 2.3E-35 238.6 14.9 139 68-217 32-197 (267)
164 PRK09493 glnQ glutamine ABC tr 100.0 8.2E-31 1.8E-35 234.9 13.8 139 69-220 15-173 (240)
165 TIGR03411 urea_trans_UrtD urea 100.0 1.2E-30 2.6E-35 233.9 14.8 151 69-227 16-187 (242)
166 cd03233 ABC_PDR_domain1 The pl 100.0 9.5E-31 2.1E-35 229.8 13.9 127 68-227 20-162 (202)
167 PRK14247 phosphate ABC transpo 100.0 1.1E-30 2.3E-35 235.5 14.3 147 69-226 17-189 (250)
168 COG4181 Predicted ABC-type tra 100.0 3.7E-31 8.1E-36 227.1 10.7 136 68-216 23-179 (228)
169 cd03231 ABC_CcmA_heme_exporter 100.0 1.8E-30 3.8E-35 227.6 15.1 143 69-228 14-170 (201)
170 PRK15079 oligopeptide ABC tran 100.0 1.2E-30 2.5E-35 246.2 14.9 138 69-219 35-197 (331)
171 PRK13538 cytochrome c biogenes 100.0 1.1E-30 2.4E-35 229.1 13.8 147 69-228 15-174 (204)
172 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.7E-31 1.2E-35 240.8 12.3 140 67-219 36-196 (269)
173 PRK13540 cytochrome c biogenes 100.0 1.5E-30 3.3E-35 227.6 14.4 136 69-219 15-163 (200)
174 TIGR01189 ccmA heme ABC export 100.0 1.1E-30 2.3E-35 228.0 13.5 137 68-218 13-162 (198)
175 PRK14249 phosphate ABC transpo 100.0 1.9E-30 4E-35 234.3 15.1 142 69-219 18-183 (251)
176 PRK11231 fecE iron-dicitrate t 100.0 2E-30 4.4E-35 234.8 15.4 136 69-217 16-172 (255)
177 TIGR03005 ectoine_ehuA ectoine 100.0 1E-30 2.3E-35 236.1 13.3 136 69-217 14-180 (252)
178 PRK11124 artP arginine transpo 100.0 1.5E-30 3.2E-35 233.5 14.2 136 69-217 16-175 (242)
179 PRK14268 phosphate ABC transpo 100.0 1.5E-30 3.2E-35 236.2 14.3 138 69-217 26-188 (258)
180 PRK10253 iron-enterobactin tra 100.0 2E-30 4.4E-35 236.4 15.1 136 69-217 21-177 (265)
181 PRK11614 livF leucine/isoleuci 100.0 2E-30 4.2E-35 232.1 14.6 139 69-219 19-173 (237)
182 PRK13649 cbiO cobalt transport 100.0 1.8E-30 3.8E-35 238.3 14.5 136 69-217 21-179 (280)
183 PRK13543 cytochrome c biogenes 100.0 2E-30 4.3E-35 229.3 14.2 136 69-217 25-171 (214)
184 PRK13548 hmuV hemin importer A 100.0 2.4E-30 5.2E-35 235.2 15.1 137 69-218 16-175 (258)
185 PRK13652 cbiO cobalt transport 100.0 2.6E-30 5.6E-35 237.4 15.4 136 69-217 18-171 (277)
186 PRK10619 histidine/lysine/argi 100.0 1.9E-30 4E-35 235.3 14.2 136 69-217 19-186 (257)
187 PRK14236 phosphate transporter 100.0 3.2E-30 7E-35 236.0 15.5 139 69-218 39-203 (272)
188 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.1E-30 2.4E-35 260.9 13.4 136 69-217 356-504 (555)
189 TIGR03415 ABC_choXWV_ATP choli 100.0 8.5E-31 1.8E-35 251.4 12.0 141 66-219 35-200 (382)
190 TIGR02982 heterocyst_DevA ABC 100.0 2E-30 4.4E-35 229.7 13.6 146 69-227 19-185 (220)
191 PRK10522 multidrug transporter 100.0 2E-30 4.3E-35 258.4 15.0 134 69-217 337-483 (547)
192 PRK13640 cbiO cobalt transport 100.0 2.9E-30 6.3E-35 237.8 15.0 136 69-217 21-177 (282)
193 cd03246 ABCC_Protease_Secretio 100.0 1.9E-30 4.1E-35 222.4 12.8 112 69-227 16-140 (173)
194 PRK13639 cbiO cobalt transport 100.0 2.1E-30 4.5E-35 237.8 13.8 136 69-217 16-171 (275)
195 PRK14237 phosphate transporter 100.0 3.6E-30 7.9E-35 235.1 15.2 138 69-217 34-197 (267)
196 PRK09544 znuC high-affinity zi 100.0 4.6E-30 1E-34 233.1 15.7 133 69-218 18-155 (251)
197 PRK13648 cbiO cobalt transport 100.0 4.4E-30 9.6E-35 234.6 15.7 136 69-217 23-176 (269)
198 PRK14254 phosphate ABC transpo 100.0 3.5E-30 7.6E-35 237.9 15.1 140 68-218 52-215 (285)
199 PRK14264 phosphate ABC transpo 100.0 4.1E-30 9E-35 239.4 15.7 147 68-220 58-237 (305)
200 PRK13645 cbiO cobalt transport 100.0 2.6E-30 5.6E-35 238.6 14.2 136 69-217 25-184 (289)
201 PRK13633 cobalt transporter AT 100.0 3.8E-30 8.2E-35 236.6 15.3 136 69-217 24-178 (280)
202 PRK14274 phosphate ABC transpo 100.0 3.8E-30 8.3E-35 233.4 15.0 139 69-218 26-190 (259)
203 COG4559 ABC-type hemin transpo 100.0 8E-31 1.7E-35 231.3 10.2 144 66-216 12-174 (259)
204 PRK10070 glycine betaine trans 100.0 1.2E-30 2.7E-35 251.7 12.4 138 68-218 41-199 (400)
205 PRK13638 cbiO cobalt transport 100.0 2.1E-30 4.5E-35 237.0 13.4 136 69-217 15-170 (271)
206 TIGR01184 ntrCD nitrate transp 100.0 1.5E-30 3.2E-35 232.7 11.8 134 71-217 1-148 (230)
207 TIGR01277 thiQ thiamine ABC tr 100.0 4E-30 8.7E-35 226.8 14.2 136 71-219 14-164 (213)
208 PRK14239 phosphate transporter 100.0 4E-30 8.6E-35 231.8 14.5 139 69-218 19-183 (252)
209 PRK14240 phosphate transporter 100.0 3.5E-30 7.7E-35 232.1 14.1 139 69-218 17-181 (250)
210 TIGR03873 F420-0_ABC_ATP propo 100.0 4.1E-30 8.8E-35 232.9 14.4 141 69-219 15-173 (256)
211 TIGR00954 3a01203 Peroxysomal 100.0 5.1E-30 1.1E-34 261.1 16.8 141 69-217 466-616 (659)
212 PRK14270 phosphate ABC transpo 100.0 4.7E-30 1E-34 231.6 14.6 139 69-218 18-182 (251)
213 PRK14243 phosphate transporter 100.0 6.8E-30 1.5E-34 233.0 15.7 141 69-218 24-186 (264)
214 PRK13539 cytochrome c biogenes 100.0 4.2E-30 9E-35 226.2 13.8 137 69-219 16-163 (207)
215 PRK14267 phosphate ABC transpo 100.0 4.6E-30 9.9E-35 231.8 14.4 148 69-227 18-193 (253)
216 PRK14245 phosphate ABC transpo 100.0 5.4E-30 1.2E-34 231.2 14.8 140 69-219 17-182 (250)
217 PRK13642 cbiO cobalt transport 100.0 5.6E-30 1.2E-34 235.2 15.1 135 69-216 21-173 (277)
218 PRK10771 thiQ thiamine transpo 100.0 5.8E-30 1.3E-34 228.5 14.8 132 73-217 17-163 (232)
219 PRK14251 phosphate ABC transpo 100.0 6.4E-30 1.4E-34 230.6 15.1 138 69-217 18-181 (251)
220 TIGR03740 galliderm_ABC gallid 100.0 5.1E-30 1.1E-34 227.4 14.0 136 68-217 13-158 (223)
221 PRK09984 phosphonate/organopho 100.0 6.7E-30 1.5E-34 232.2 15.1 140 69-217 18-186 (262)
222 cd03230 ABC_DR_subfamily_A Thi 100.0 5.6E-30 1.2E-34 219.5 13.4 106 69-220 14-132 (173)
223 PRK14238 phosphate transporter 100.0 4.8E-30 1E-34 234.9 13.9 140 69-219 38-203 (271)
224 TIGR02769 nickel_nikE nickel i 100.0 4.2E-30 9.1E-35 234.3 13.5 137 68-217 24-184 (265)
225 PRK14253 phosphate ABC transpo 100.0 6.9E-30 1.5E-34 230.1 14.5 140 69-217 17-179 (249)
226 PRK14262 phosphate ABC transpo 100.0 7E-30 1.5E-34 230.2 14.5 140 69-217 17-180 (250)
227 PRK14271 phosphate ABC transpo 100.0 6.7E-30 1.4E-34 234.8 14.7 138 69-217 35-197 (276)
228 PRK14261 phosphate ABC transpo 100.0 7.6E-30 1.6E-34 230.6 14.8 140 69-217 20-183 (253)
229 PRK14256 phosphate ABC transpo 100.0 9.1E-30 2E-34 229.9 15.2 138 69-217 18-182 (252)
230 TIGR01978 sufC FeS assembly AT 100.0 5.2E-30 1.1E-34 229.4 13.4 150 69-227 14-188 (243)
231 PRK11022 dppD dipeptide transp 100.0 5.8E-30 1.3E-34 240.9 14.3 139 69-218 21-188 (326)
232 PRK14241 phosphate transporter 100.0 6.8E-30 1.5E-34 231.7 14.1 138 69-217 18-182 (258)
233 cd03234 ABCG_White The White s 100.0 2.6E-30 5.5E-35 230.0 11.0 152 68-227 20-187 (226)
234 cd03229 ABC_Class3 This class 100.0 5.5E-30 1.2E-34 220.5 12.6 105 69-217 14-134 (178)
235 cd03228 ABCC_MRP_Like The MRP 100.0 5.2E-30 1.1E-34 219.3 12.4 104 69-219 16-132 (171)
236 TIGR02324 CP_lyasePhnL phospho 100.0 1.7E-29 3.6E-34 224.0 15.9 137 69-218 22-184 (224)
237 PRK14244 phosphate ABC transpo 100.0 6E-30 1.3E-34 231.0 13.1 139 69-218 19-184 (251)
238 PRK14275 phosphate ABC transpo 100.0 8.9E-30 1.9E-34 235.1 14.5 139 68-217 52-216 (286)
239 PRK14255 phosphate ABC transpo 100.0 1.1E-29 2.4E-34 229.1 14.7 141 69-218 19-183 (252)
240 PRK11701 phnK phosphonate C-P 100.0 1.1E-29 2.4E-34 230.3 14.7 141 69-218 20-186 (258)
241 PRK14272 phosphate ABC transpo 100.0 8.2E-30 1.8E-34 229.8 13.7 140 69-217 18-182 (252)
242 PRK15056 manganese/iron transp 100.0 1.1E-29 2.3E-34 232.6 14.5 136 69-217 21-176 (272)
243 PRK09473 oppD oligopeptide tra 100.0 1.2E-29 2.6E-34 239.2 14.9 146 69-224 30-202 (330)
244 PRK13541 cytochrome c biogenes 100.0 1.3E-29 2.9E-34 220.9 13.9 141 71-226 16-166 (195)
245 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-30 2.4E-35 228.9 7.0 136 69-217 16-167 (245)
246 PRK10762 D-ribose transporter 100.0 8.5E-30 1.8E-34 251.4 14.2 140 69-217 18-175 (501)
247 PRK14260 phosphate ABC transpo 100.0 1.3E-29 2.9E-34 230.1 13.9 142 69-219 21-186 (259)
248 PRK11308 dppF dipeptide transp 100.0 4.2E-29 9E-34 235.2 17.7 137 69-218 29-189 (327)
249 PRK15439 autoinducer 2 ABC tra 100.0 2.2E-29 4.7E-34 249.3 16.5 135 69-217 25-174 (510)
250 TIGR00968 3a0106s01 sulfate AB 100.0 1.6E-29 3.5E-34 226.7 14.2 136 69-217 14-164 (237)
251 PRK13549 xylose transporter AT 100.0 1.3E-29 2.9E-34 250.3 15.0 135 69-216 19-176 (506)
252 PRK14265 phosphate ABC transpo 100.0 1.8E-29 3.9E-34 231.6 14.8 151 69-228 34-206 (274)
253 cd03300 ABC_PotA_N PotA is an 100.0 1.2E-29 2.5E-34 226.8 13.1 136 69-217 14-164 (232)
254 cd03215 ABC_Carb_Monos_II This 100.0 5.8E-30 1.3E-34 221.0 10.8 126 61-228 6-149 (182)
255 PRK14266 phosphate ABC transpo 100.0 2E-29 4.3E-34 227.2 14.3 149 69-226 17-189 (250)
256 cd03299 ABC_ModC_like Archeal 100.0 1.8E-29 3.8E-34 226.3 13.6 135 70-217 14-163 (235)
257 TIGR02142 modC_ABC molybdenum 100.0 1.4E-29 3E-34 240.6 13.7 132 73-217 15-165 (354)
258 PRK14263 phosphate ABC transpo 100.0 3.4E-29 7.4E-34 228.3 15.6 142 68-218 21-184 (261)
259 COG4175 ProV ABC-type proline/ 100.0 1.7E-30 3.7E-35 240.3 7.1 149 69-230 42-211 (386)
260 PRK11144 modC molybdate transp 100.0 1.4E-29 3E-34 240.6 13.3 129 73-217 16-162 (352)
261 PRK13547 hmuV hemin importer A 100.0 2.3E-29 5E-34 231.2 14.3 140 69-217 15-188 (272)
262 PRK09700 D-allose transporter 100.0 2E-29 4.3E-34 249.1 14.8 140 69-217 19-179 (510)
263 cd03297 ABC_ModC_molybdenum_tr 100.0 1.7E-29 3.6E-34 222.8 12.8 134 73-220 16-168 (214)
264 PRK11288 araG L-arabinose tran 100.0 2.3E-29 5E-34 248.4 15.1 136 69-217 18-174 (501)
265 TIGR02323 CP_lyasePhnK phospho 100.0 2.5E-29 5.5E-34 226.9 13.8 137 69-217 17-182 (253)
266 COG4619 ABC-type uncharacteriz 100.0 1.8E-30 4E-35 222.2 5.6 139 67-216 15-166 (223)
267 PRK14252 phosphate ABC transpo 100.0 4.6E-29 1E-33 227.2 15.1 141 69-218 30-196 (265)
268 COG0411 LivG ABC-type branched 100.0 4.2E-30 9E-35 230.5 8.0 156 66-230 15-196 (250)
269 PRK15112 antimicrobial peptide 100.0 6.2E-29 1.3E-33 227.0 15.8 137 69-218 27-184 (267)
270 COG1123 ATPase components of v 100.0 4.1E-30 8.9E-35 253.2 8.5 153 68-232 304-478 (539)
271 PRK14258 phosphate ABC transpo 100.0 5.3E-29 1.2E-33 226.6 15.1 139 69-218 21-185 (261)
272 cd03213 ABCG_EPDR ABCG transpo 100.0 2.3E-29 5.1E-34 219.7 12.2 110 69-217 23-145 (194)
273 PRK13546 teichoic acids export 100.0 4.4E-29 9.6E-34 228.5 14.4 137 68-217 37-177 (264)
274 PRK15093 antimicrobial peptide 100.0 3.7E-29 8E-34 235.6 14.3 151 69-227 21-202 (330)
275 PRK10418 nikD nickel transport 100.0 6.7E-29 1.4E-33 224.9 15.4 138 69-217 17-174 (254)
276 PRK10261 glutathione transport 100.0 4E-29 8.7E-34 253.0 15.3 139 69-218 30-203 (623)
277 cd03267 ABC_NatA_like Similar 100.0 2.4E-29 5.2E-34 225.7 11.9 139 67-218 33-188 (236)
278 PF00005 ABC_tran: ABC transpo 100.0 1.3E-29 2.9E-34 207.3 9.4 123 71-212 1-137 (137)
279 cd03232 ABC_PDR_domain2 The pl 100.0 3.8E-29 8.2E-34 217.9 12.7 111 69-218 21-143 (192)
280 PRK10982 galactose/methyl gala 100.0 2.9E-29 6.4E-34 246.9 13.1 138 68-218 11-169 (491)
281 TIGR02633 xylG D-xylose ABC tr 100.0 4.5E-29 9.8E-34 245.9 14.3 140 69-217 15-175 (500)
282 TIGR02770 nickel_nikD nickel i 100.0 2.8E-29 6.1E-34 224.0 11.5 137 70-217 1-159 (230)
283 PRK10419 nikE nickel transport 100.0 9.3E-29 2E-33 226.1 14.0 136 69-217 26-185 (268)
284 PRK03695 vitamin B12-transport 100.0 1E-28 2.2E-33 223.4 13.7 137 69-217 10-167 (248)
285 PRK14246 phosphate ABC transpo 100.0 1.3E-28 2.9E-33 223.9 13.9 142 68-218 23-188 (257)
286 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.9E-29 1.5E-33 221.3 11.4 138 67-217 34-176 (224)
287 CHL00131 ycf16 sulfate ABC tra 100.0 2.9E-28 6.3E-33 219.7 15.4 139 69-217 21-185 (252)
288 PRK15064 ABC transporter ATP-b 100.0 1.6E-28 3.5E-33 243.8 14.7 141 69-217 15-189 (530)
289 COG4148 ModC ABC-type molybdat 100.0 4E-29 8.7E-34 228.1 9.2 127 73-216 16-161 (352)
290 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.2E-28 2.5E-33 223.5 12.2 137 70-220 9-152 (246)
291 PRK11819 putative ABC transpor 100.0 3.1E-28 6.7E-33 243.4 16.1 150 69-227 21-207 (556)
292 COG5265 ATM1 ABC-type transpor 100.0 3.5E-29 7.6E-34 238.4 8.6 143 67-215 275-431 (497)
293 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-28 3.6E-33 245.1 13.8 143 69-220 19-198 (552)
294 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-28 3.2E-33 243.5 13.0 137 68-217 13-202 (520)
295 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.1E-28 4.6E-33 214.4 12.4 109 69-218 14-139 (200)
296 PRK09700 D-allose transporter 100.0 1.2E-28 2.7E-33 243.5 12.2 159 60-226 266-452 (510)
297 PRK10261 glutathione transport 100.0 1.4E-28 3E-33 249.1 12.4 146 68-226 337-506 (623)
298 PRK11288 araG L-arabinose tran 100.0 1.2E-28 2.7E-33 243.2 11.5 154 59-220 257-433 (501)
299 PRK15134 microcin C ABC transp 100.0 4.5E-28 9.8E-33 240.6 15.2 138 69-217 23-190 (529)
300 PRK15064 ABC transporter ATP-b 100.0 7E-28 1.5E-32 239.3 16.3 137 68-219 332-474 (530)
301 PRK10938 putative molybdenum t 100.0 2.7E-28 5.8E-33 239.9 13.0 131 69-217 17-169 (490)
302 TIGR03269 met_CoM_red_A2 methy 100.0 2.4E-28 5.2E-33 242.0 12.7 142 68-220 297-464 (520)
303 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.3E-28 1.8E-32 240.1 16.5 147 68-227 335-487 (552)
304 COG4598 HisP ABC-type histidin 100.0 5.4E-29 1.2E-33 215.4 6.2 148 66-226 17-195 (256)
305 PRK10762 D-ribose transporter 100.0 2.6E-28 5.6E-33 240.9 11.6 159 59-226 257-438 (501)
306 PRK15134 microcin C ABC transp 100.0 2.9E-28 6.3E-33 242.0 11.9 145 68-226 299-468 (529)
307 COG0444 DppD ABC-type dipeptid 100.0 9.3E-29 2E-33 229.5 7.8 153 68-230 18-200 (316)
308 PRK11819 putative ABC transpor 100.0 9E-28 2E-32 240.1 15.4 147 68-227 337-489 (556)
309 PRK13549 xylose transporter AT 100.0 3.2E-28 6.9E-33 240.5 11.8 150 68-225 275-447 (506)
310 PRK09580 sufC cysteine desulfu 100.0 1.1E-27 2.5E-32 215.1 14.2 142 69-217 15-179 (248)
311 PRK15177 Vi polysaccharide exp 100.0 2.7E-28 5.9E-33 216.2 10.0 135 70-217 2-138 (213)
312 COG1129 MglA ABC-type sugar tr 100.0 9.6E-28 2.1E-32 235.0 14.7 140 68-216 21-178 (500)
313 cd03216 ABC_Carb_Monos_I This 100.0 7.5E-28 1.6E-32 204.9 12.0 104 69-218 14-117 (163)
314 cd03214 ABC_Iron-Siderophores_ 100.0 3.2E-28 6.9E-33 209.9 9.8 119 69-217 13-131 (180)
315 TIGR03771 anch_rpt_ABC anchore 99.9 6.7E-28 1.4E-32 214.6 11.2 129 76-217 1-147 (223)
316 COG3845 ABC-type uncharacteriz 99.9 6.9E-28 1.5E-32 233.2 12.2 136 68-216 17-173 (501)
317 PRK11147 ABC transporter ATPas 99.9 2.7E-27 5.9E-32 240.1 16.4 137 68-217 332-474 (635)
318 TIGR02633 xylG D-xylose ABC tr 99.9 6.1E-28 1.3E-32 237.9 11.1 142 68-217 273-437 (500)
319 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.8E-27 3.8E-32 199.1 11.7 89 69-217 14-104 (144)
320 PRK13545 tagH teichoic acids e 99.9 4.3E-27 9.3E-32 232.6 15.7 137 68-217 37-177 (549)
321 PRK13409 putative ATPase RIL; 99.9 2.5E-27 5.4E-32 238.7 14.1 142 70-226 354-496 (590)
322 PRK15439 autoinducer 2 ABC tra 99.9 1.2E-27 2.5E-32 237.0 11.5 156 59-226 268-446 (510)
323 COG4608 AppF ABC-type oligopep 99.9 2.9E-28 6.4E-33 221.9 6.6 133 69-233 27-159 (268)
324 COG1123 ATPase components of v 99.9 1.6E-27 3.5E-32 234.9 11.0 151 69-230 23-201 (539)
325 COG4136 ABC-type uncharacteriz 99.9 1.5E-27 3.2E-32 201.4 8.9 140 67-218 14-169 (213)
326 PRK10938 putative molybdenum t 99.9 3.3E-27 7.1E-32 232.2 12.4 141 67-220 272-438 (490)
327 KOG0054|consensus 99.9 4.3E-27 9.4E-32 251.0 13.8 147 68-233 1153-1312(1381)
328 PRK10636 putative ABC transpor 99.9 1.5E-26 3.2E-31 235.1 16.0 133 68-216 325-463 (638)
329 COG4604 CeuD ABC-type enteroch 99.9 4.7E-28 1E-32 211.9 4.0 141 66-215 12-167 (252)
330 TIGR01257 rim_protein retinal- 99.9 1.3E-26 2.9E-31 256.2 15.7 138 67-217 942-1095(2272)
331 PLN03211 ABC transporter G-25; 99.9 1.1E-26 2.3E-31 236.8 13.7 149 67-226 80-249 (659)
332 cd03222 ABC_RNaseL_inhibitor T 99.9 7.5E-27 1.6E-31 202.5 9.9 94 67-218 12-106 (177)
333 TIGR00955 3a01204 The Eye Pigm 99.9 6.7E-27 1.4E-31 236.6 11.1 145 67-217 37-200 (617)
334 PRK10636 putative ABC transpor 99.9 2E-26 4.3E-31 234.0 14.5 144 68-219 14-185 (638)
335 COG4152 ABC-type uncharacteriz 99.9 5.2E-27 1.1E-31 210.9 7.2 139 66-217 13-164 (300)
336 PRK10982 galactose/methyl gala 99.9 1.2E-26 2.5E-31 228.5 10.4 155 60-226 251-434 (491)
337 PLN03073 ABC transporter F fam 99.9 7.3E-26 1.6E-30 232.5 16.5 132 68-217 522-661 (718)
338 COG4172 ABC-type uncharacteriz 99.9 1.1E-26 2.3E-31 220.7 9.6 153 68-233 300-476 (534)
339 COG0488 Uup ATPase components 99.9 4.8E-26 1E-30 226.2 14.2 141 67-216 15-186 (530)
340 TIGR01257 rim_protein retinal- 99.9 4.3E-26 9.4E-31 252.2 14.8 140 68-220 1952-2107(2272)
341 PRK10535 macrolide transporter 99.9 8E-26 1.7E-30 230.0 15.3 135 69-216 22-177 (648)
342 cd03236 ABC_RNaseL_inhibitor_d 99.9 3.2E-26 7E-31 208.7 10.7 133 69-217 15-173 (255)
343 COG1119 ModF ABC-type molybden 99.9 8.4E-27 1.8E-31 209.5 6.2 158 66-232 42-220 (257)
344 TIGR01187 potA spermidine/putr 99.9 2.5E-26 5.4E-31 216.0 9.2 119 86-217 1-134 (325)
345 COG4133 CcmA ABC-type transpor 99.9 2.9E-26 6.3E-31 199.0 8.5 133 67-216 14-163 (209)
346 PRK11147 ABC transporter ATPas 99.9 1.7E-25 3.6E-30 227.1 14.6 141 69-219 17-192 (635)
347 COG4161 ArtP ABC-type arginine 99.9 2.5E-26 5.4E-31 196.2 7.1 135 69-216 16-174 (242)
348 COG1101 PhnK ABC-type uncharac 99.9 5.8E-26 1.3E-30 201.0 8.8 147 68-233 19-185 (263)
349 TIGR00956 3a01205 Pleiotropic 99.9 2.9E-25 6.3E-30 241.6 16.1 139 67-216 775-935 (1394)
350 cd03238 ABC_UvrA The excision 99.9 3.7E-25 8.1E-30 191.7 10.0 115 68-227 8-133 (176)
351 cd00267 ABC_ATPase ABC (ATP-bi 99.9 8.4E-25 1.8E-29 184.1 11.5 102 69-217 13-114 (157)
352 PRK13409 putative ATPase RIL; 99.9 5.2E-25 1.1E-29 221.9 9.2 130 68-217 87-246 (590)
353 COG4172 ABC-type uncharacteriz 99.9 7.9E-25 1.7E-29 208.1 9.1 154 68-231 23-205 (534)
354 PLN03140 ABC transporter G fam 99.9 2E-24 4.3E-29 235.4 11.8 138 68-216 893-1052(1470)
355 TIGR00956 3a01205 Pleiotropic 99.9 1.7E-24 3.7E-29 235.6 11.3 152 67-228 73-254 (1394)
356 COG4674 Uncharacterized ABC-ty 99.9 4.9E-25 1.1E-29 192.7 3.2 142 66-215 16-179 (249)
357 COG4167 SapF ABC-type antimicr 99.9 3.6E-24 7.8E-29 186.0 6.6 153 69-233 27-199 (267)
358 PLN03140 ABC transporter G fam 99.9 1E-23 2.3E-28 229.8 8.6 157 67-229 177-382 (1470)
359 COG0488 Uup ATPase components 99.9 8.6E-23 1.9E-27 203.0 14.3 133 68-216 335-472 (530)
360 COG4107 PhnK ABC-type phosphon 99.9 1.4E-23 2.9E-28 181.3 7.1 146 67-220 18-188 (258)
361 KOG0061|consensus 99.9 5.7E-23 1.2E-27 207.9 12.6 150 68-226 43-213 (613)
362 COG4778 PhnL ABC-type phosphon 99.9 9.4E-24 2E-28 181.5 5.4 138 68-217 24-186 (235)
363 PLN03073 ABC transporter F fam 99.9 1.9E-22 4.2E-27 207.2 14.0 140 67-217 189-378 (718)
364 COG4178 ABC-type uncharacteriz 99.9 1.7E-22 3.6E-27 201.8 12.0 169 67-247 405-578 (604)
365 COG1134 TagH ABC-type polysacc 99.9 1.8E-22 3.8E-27 181.5 10.1 123 67-196 39-166 (249)
366 COG4586 ABC-type uncharacteriz 99.9 2.4E-22 5.3E-27 183.2 7.9 142 69-223 38-196 (325)
367 COG0396 sufC Cysteine desulfur 99.9 5.5E-22 1.2E-26 177.0 10.0 137 68-216 17-177 (251)
368 cd03270 ABC_UvrA_I The excisio 99.8 4.1E-21 8.9E-26 171.8 9.9 146 68-227 8-183 (226)
369 cd03278 ABC_SMC_barmotin Barmo 99.8 8.8E-22 1.9E-26 173.0 5.4 130 72-228 14-162 (197)
370 KOG0060|consensus 99.8 1.2E-20 2.6E-25 185.7 13.4 144 67-216 447-603 (659)
371 KOG0059|consensus 99.8 2.2E-20 4.8E-25 196.0 7.2 120 70-196 580-717 (885)
372 KOG0927|consensus 99.8 6.1E-20 1.3E-24 179.6 7.3 132 69-216 404-542 (614)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1E-19 2.3E-24 162.9 6.9 52 171-227 152-206 (243)
374 cd03279 ABC_sbcCD SbcCD and ot 99.8 1.2E-19 2.6E-24 160.6 4.1 132 72-217 18-167 (213)
375 cd03240 ABC_Rad50 The catalyti 99.8 3E-19 6.6E-24 157.6 6.5 115 73-217 15-155 (204)
376 KOG0064|consensus 99.8 1.3E-18 2.8E-23 170.0 11.1 140 67-214 494-643 (728)
377 cd03271 ABC_UvrA_II The excisi 99.8 1.3E-18 2.8E-23 159.5 9.3 45 170-217 162-206 (261)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.8 4.4E-19 9.4E-24 160.6 4.6 141 81-226 25-213 (251)
379 COG4615 PvdE ABC-type sideroph 99.7 4.5E-18 9.8E-23 161.9 9.7 133 71-233 339-485 (546)
380 COG1129 MglA ABC-type sugar tr 99.7 4.7E-18 1E-22 167.0 9.9 152 58-216 262-434 (500)
381 COG4138 BtuD ABC-type cobalami 99.7 3.8E-19 8.3E-24 153.8 1.8 137 69-215 13-164 (248)
382 COG1245 Predicted ATPase, RNas 99.7 1E-17 2.3E-22 161.6 8.7 130 70-216 351-488 (591)
383 KOG0927|consensus 99.7 2.6E-17 5.6E-22 161.3 11.0 153 67-230 87-270 (614)
384 cd03274 ABC_SMC4_euk Eukaryoti 99.7 9.7E-19 2.1E-23 155.4 0.0 141 66-219 15-167 (212)
385 KOG0065|consensus 99.7 7.4E-18 1.6E-22 178.2 5.1 140 67-216 803-963 (1391)
386 KOG0062|consensus 99.7 2.2E-17 4.7E-22 161.1 5.9 128 66-216 91-231 (582)
387 KOG0066|consensus 99.7 1.1E-16 2.4E-21 154.2 8.9 134 66-216 598-737 (807)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.7 2.9E-16 6.2E-21 138.1 8.6 122 70-219 11-149 (198)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.6 8.3E-17 1.8E-21 145.6 4.5 139 76-217 18-193 (247)
390 PRK00635 excinuclease ABC subu 99.6 1E-15 2.2E-20 168.1 10.2 40 59-99 600-639 (1809)
391 KOG2355|consensus 99.6 1.3E-15 2.8E-20 134.9 7.1 157 14-227 10-191 (291)
392 PRK00349 uvrA excinuclease ABC 99.6 6.1E-15 1.3E-19 155.3 10.7 43 59-102 614-656 (943)
393 COG3845 ABC-type uncharacteriz 99.6 1.1E-14 2.4E-19 141.8 9.2 149 59-215 257-435 (501)
394 KOG0062|consensus 99.5 1E-14 2.3E-19 142.5 6.3 132 69-216 378-515 (582)
395 COG2401 ABC-type ATPase fused 99.5 1.4E-14 3.1E-19 138.9 5.7 134 67-216 395-540 (593)
396 cd03280 ABC_MutS2 MutS2 homolo 99.5 2.7E-14 5.8E-19 125.2 5.7 99 71-217 17-124 (200)
397 cd00820 PEPCK_HprK Phosphoenol 99.5 8.5E-14 1.8E-18 111.6 6.8 64 68-139 2-78 (107)
398 COG1245 Predicted ATPase, RNas 99.5 2.2E-14 4.8E-19 138.8 3.9 121 77-216 96-246 (591)
399 TIGR00630 uvra excinuclease AB 99.5 1.8E-13 3.9E-18 144.0 10.4 42 59-101 612-653 (924)
400 cd03239 ABC_SMC_head The struc 99.5 3.7E-14 8E-19 122.9 4.2 120 72-217 13-132 (178)
401 COG4170 SapD ABC-type antimicr 99.4 1.6E-13 3.5E-18 122.2 3.8 151 68-226 20-201 (330)
402 KOG0066|consensus 99.4 6E-13 1.3E-17 128.6 7.1 153 67-229 276-460 (807)
403 cd03277 ABC_SMC5_euk Eukaryoti 99.4 7.9E-13 1.7E-17 117.7 6.2 42 172-219 121-166 (213)
404 cd03227 ABC_Class2 ABC-type Cl 99.3 2.9E-12 6.3E-17 108.9 6.4 100 73-217 13-115 (162)
405 KOG0065|consensus 99.3 1.9E-12 4.1E-17 137.8 6.1 153 68-226 128-303 (1391)
406 cd03283 ABC_MutS-like MutS-lik 99.2 2.8E-12 6.1E-17 113.0 2.8 69 68-140 14-84 (199)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.2 1.9E-12 4.1E-17 116.0 1.6 106 68-217 17-128 (222)
408 cd03282 ABC_MSH4_euk MutS4 hom 99.2 3.4E-12 7.3E-17 113.1 2.6 109 67-217 15-124 (204)
409 cd03241 ABC_RecN RecN ATPase i 99.2 2.5E-11 5.5E-16 111.7 8.1 32 70-102 11-42 (276)
410 cd03243 ABC_MutS_homologs The 99.2 5E-12 1.1E-16 110.9 0.9 32 73-104 21-52 (202)
411 cd03242 ABC_RecF RecF is a rec 99.2 1.1E-10 2.3E-15 107.2 9.4 34 70-104 11-44 (270)
412 KOG0063|consensus 99.1 1.8E-10 3.9E-15 111.3 9.5 122 66-199 347-478 (592)
413 TIGR03238 dnd_assoc_3 dnd syst 99.0 3.8E-10 8.2E-15 111.0 5.1 47 69-117 20-67 (504)
414 cd01128 rho_factor Transcripti 99.0 2.1E-09 4.6E-14 98.2 9.3 122 74-198 9-158 (249)
415 cd03284 ABC_MutS1 MutS1 homolo 99.0 7.4E-10 1.6E-14 98.8 5.6 36 68-104 18-53 (216)
416 PRK00635 excinuclease ABC subu 99.0 1.4E-09 3E-14 120.5 8.9 44 170-216 1692-1735(1809)
417 COG0178 UvrA Excinuclease ATPa 98.9 1.4E-09 3.1E-14 111.5 7.8 42 170-214 815-856 (935)
418 cd03281 ABC_MSH5_euk MutS5 hom 98.9 2.2E-09 4.8E-14 95.5 7.3 100 70-216 18-123 (213)
419 TIGR01069 mutS2 MutS2 family p 98.9 8E-10 1.7E-14 115.1 3.2 102 74-216 314-417 (771)
420 TIGR02858 spore_III_AA stage I 98.8 4E-09 8.8E-14 97.4 6.0 37 82-118 112-148 (270)
421 PTZ00132 GTP-binding nuclear p 98.8 3.4E-09 7.4E-14 93.2 2.6 32 182-219 157-193 (215)
422 smart00534 MUTSac ATPase domai 98.7 2.8E-09 6E-14 92.6 0.3 20 83-102 1-20 (185)
423 cd03287 ABC_MSH3_euk MutS3 hom 98.7 1.9E-08 4.1E-13 90.4 5.5 48 68-115 18-66 (222)
424 cd01130 VirB11-like_ATPase Typ 98.7 2.5E-08 5.4E-13 86.5 6.0 67 73-139 17-96 (186)
425 PF02463 SMC_N: RecF/RecN/SMC 98.7 8.3E-09 1.8E-13 91.0 2.9 29 72-101 16-44 (220)
426 PRK06793 fliI flagellum-specif 98.6 2.5E-07 5.4E-12 90.6 10.9 118 67-216 143-261 (432)
427 KOG0063|consensus 98.6 9.5E-09 2.1E-13 99.5 0.6 35 78-112 97-131 (592)
428 PRK07196 fliI flagellum-specif 98.5 1.6E-07 3.4E-12 92.1 6.5 71 67-138 142-235 (434)
429 PRK00409 recombination and DNA 98.5 1.4E-07 3E-12 98.6 6.4 103 74-217 319-423 (782)
430 PRK06002 fliI flagellum-specif 98.5 4.1E-07 8.9E-12 89.4 7.9 48 67-115 152-199 (450)
431 PRK06995 flhF flagellar biosyn 98.4 1.4E-07 3.1E-12 93.5 2.2 63 70-138 245-307 (484)
432 smart00382 AAA ATPases associa 98.4 3E-06 6.5E-11 66.3 9.4 30 80-109 1-30 (148)
433 TIGR00630 uvra excinuclease AB 98.3 4.6E-07 1E-11 96.1 4.7 42 171-216 481-522 (924)
434 PRK00349 uvrA excinuclease ABC 98.3 4.6E-07 1E-11 96.3 4.7 42 171-216 483-524 (943)
435 TIGR00235 udk uridine kinase. 98.3 5.4E-07 1.2E-11 79.3 3.9 41 79-127 4-44 (207)
436 TIGR00606 rad50 rad50. This fa 98.3 7.1E-07 1.5E-11 98.1 5.5 81 127-217 1153-1239(1311)
437 PRK07721 fliI flagellum-specif 98.3 8.4E-07 1.8E-11 87.2 5.1 49 67-116 145-193 (438)
438 PRK01889 GTPase RsgA; Reviewed 98.3 1.2E-06 2.7E-11 83.8 5.7 68 72-139 186-263 (356)
439 cd01136 ATPase_flagellum-secre 98.2 1.6E-06 3.4E-11 82.3 5.9 48 67-115 56-103 (326)
440 PRK08149 ATP synthase SpaL; Va 98.2 2E-06 4.3E-11 84.3 6.2 49 67-116 138-189 (428)
441 PF13555 AAA_29: P-loop contai 98.2 1.6E-06 3.6E-11 62.9 4.2 38 71-108 12-50 (62)
442 PRK09270 nucleoside triphospha 98.2 2.1E-06 4.5E-11 76.8 5.0 35 78-112 30-64 (229)
443 TIGR02546 III_secr_ATP type II 98.2 3.3E-06 7.1E-11 82.7 6.7 48 67-115 132-179 (422)
444 cd02023 UMPK Uridine monophosp 98.2 2.3E-06 5E-11 74.4 5.0 23 83-105 1-23 (198)
445 PRK07594 type III secretion sy 98.2 2.2E-06 4.8E-11 84.0 5.1 50 66-116 141-190 (433)
446 PRK09825 idnK D-gluconate kina 98.1 2.3E-06 5E-11 74.0 4.4 33 80-116 2-34 (176)
447 PRK00300 gmk guanylate kinase; 98.1 1.9E-06 4.2E-11 75.0 3.8 28 79-106 3-30 (205)
448 PRK08533 flagellar accessory p 98.1 4E-06 8.6E-11 75.5 5.9 31 77-107 20-51 (230)
449 PRK09099 type III secretion sy 98.1 3.3E-06 7.2E-11 83.0 5.7 49 67-116 150-198 (441)
450 PRK13695 putative NTPase; Prov 98.1 7.1E-07 1.5E-11 76.3 0.8 104 83-210 2-105 (174)
451 PRK06315 type III secretion sy 98.1 5.6E-06 1.2E-10 81.5 6.9 46 68-114 152-198 (442)
452 TIGR02788 VirB11 P-type DNA tr 98.1 2.1E-06 4.5E-11 80.5 3.5 42 74-115 137-178 (308)
453 PRK10078 ribose 1,5-bisphospho 98.1 4.1E-06 8.9E-11 72.5 5.1 27 81-107 2-28 (186)
454 TIGR00767 rho transcription te 98.1 6.4E-06 1.4E-10 80.0 6.5 36 73-108 160-195 (415)
455 TIGR01026 fliI_yscN ATPase Fli 98.1 4.1E-06 8.9E-11 82.4 4.9 48 67-115 150-197 (440)
456 TIGR03497 FliI_clade2 flagella 98.1 6.3E-06 1.4E-10 80.5 6.1 49 67-116 124-172 (413)
457 TIGR03498 FliI_clade3 flagella 98.1 4.2E-06 9.2E-11 81.8 4.8 48 68-116 128-175 (418)
458 cd01120 RecA-like_NTPases RecA 98.0 1.3E-05 2.8E-10 65.6 6.7 36 83-124 1-36 (165)
459 PRK07960 fliI flagellum-specif 98.0 7.7E-06 1.7E-10 80.6 6.0 47 69-116 164-213 (455)
460 PRK05922 type III secretion sy 98.0 9.4E-06 2E-10 79.7 6.1 49 67-116 144-192 (434)
461 PRK05688 fliI flagellum-specif 98.0 8.1E-06 1.7E-10 80.4 5.4 41 67-108 155-195 (451)
462 TIGR03496 FliI_clade1 flagella 98.0 1E-05 2.2E-10 79.1 5.8 49 67-116 124-172 (411)
463 PLN02796 D-glycerate 3-kinase 98.0 2.4E-06 5.3E-11 81.4 1.4 48 69-116 80-138 (347)
464 PRK09862 putative ATP-dependen 98.0 6.8E-06 1.5E-10 82.1 4.2 50 67-116 196-245 (506)
465 TIGR00554 panK_bact pantothena 97.9 5.5E-06 1.2E-10 77.4 2.9 35 80-114 61-97 (290)
466 PF13476 AAA_23: AAA domain; P 97.9 9.4E-06 2E-10 69.1 4.0 32 70-102 9-40 (202)
467 TIGR02322 phosphon_PhnN phosph 97.9 1.2E-05 2.6E-10 68.7 4.3 32 81-113 1-32 (179)
468 PRK05480 uridine/cytidine kina 97.9 1.6E-05 3.5E-10 69.7 5.0 42 79-128 4-45 (209)
469 PRK08472 fliI flagellum-specif 97.9 1.2E-05 2.6E-10 78.9 4.5 49 67-116 144-192 (434)
470 PRK08972 fliI flagellum-specif 97.9 1.6E-05 3.4E-10 78.2 4.9 41 67-108 149-189 (444)
471 cd00879 Sar1 Sar1 subfamily. 97.8 1.3E-05 2.8E-10 68.5 3.6 33 70-103 9-41 (190)
472 TIGR03263 guanyl_kin guanylate 97.8 1.6E-05 3.5E-10 67.7 3.8 26 81-106 1-26 (180)
473 cd01854 YjeQ_engC YjeQ/EngC. 97.8 3.3E-05 7.2E-10 71.8 6.0 40 74-114 155-194 (287)
474 PLN02318 phosphoribulokinase/u 97.8 2E-05 4.3E-10 79.9 4.8 55 82-137 66-127 (656)
475 PRK06936 type III secretion sy 97.8 2.7E-05 5.8E-10 76.6 5.4 41 67-108 149-189 (439)
476 PRK04863 mukB cell division pr 97.8 3E-05 6.5E-10 85.9 6.0 45 71-116 18-62 (1486)
477 cd02025 PanK Pantothenate kina 97.8 1.3E-05 2.8E-10 71.7 2.6 41 83-127 1-41 (220)
478 PHA02562 46 endonuclease subun 97.8 1.1E-05 2.3E-10 80.8 2.1 53 176-228 467-524 (562)
479 TIGR00101 ureG urease accessor 97.8 1.8E-05 3.8E-10 69.8 3.1 29 83-111 3-31 (199)
480 PRK10416 signal recognition pa 97.7 2E-05 4.4E-10 74.5 3.4 37 79-115 112-148 (318)
481 cd02026 PRK Phosphoribulokinas 97.7 2.4E-05 5.3E-10 72.3 3.9 33 83-115 1-33 (273)
482 cd04155 Arl3 Arl3 subfamily. 97.7 4.2E-05 9.2E-10 64.0 5.0 35 82-116 15-57 (173)
483 PRK06820 type III secretion sy 97.7 4.9E-05 1.1E-09 74.8 5.7 43 67-110 150-192 (440)
484 PRK14723 flhF flagellar biosyn 97.7 2.1E-05 4.6E-10 81.8 3.2 52 70-125 174-225 (767)
485 TIGR00606 rad50 rad50. This fa 97.7 4.8E-05 1E-09 83.9 5.7 34 82-115 29-67 (1311)
486 PRK00098 GTPase RsgA; Reviewed 97.7 4.6E-05 9.9E-10 71.2 4.6 35 80-114 163-197 (298)
487 TIGR00368 Mg chelatase-related 97.6 3.2E-05 7E-10 77.3 3.2 50 67-116 197-246 (499)
488 PRK03846 adenylylsulfate kinas 97.6 5.3E-05 1.2E-09 66.2 4.0 38 79-116 22-60 (198)
489 cd03286 ABC_MSH6_euk MutS6 hom 97.6 7.6E-05 1.6E-09 67.0 4.8 38 67-104 16-53 (218)
490 TIGR01360 aden_kin_iso1 adenyl 97.6 3.2E-05 7E-10 65.9 2.1 33 81-113 3-38 (188)
491 PRK13477 bifunctional pantoate 97.6 8.2E-05 1.8E-09 74.6 5.0 47 66-113 270-319 (512)
492 PF03193 DUF258: Protein of un 97.6 7.4E-05 1.6E-09 64.2 4.1 35 80-114 34-68 (161)
493 cd01124 KaiC KaiC is a circadi 97.6 0.00024 5.1E-09 60.5 7.2 19 84-102 2-20 (187)
494 TIGR02168 SMC_prok_B chromosom 97.5 8.9E-05 1.9E-09 79.4 5.2 50 74-124 17-85 (1179)
495 cd04104 p47_IIGP_like p47 (47- 97.5 7.3E-05 1.6E-09 65.2 3.8 33 83-115 3-35 (197)
496 TIGR02524 dot_icm_DotB Dot/Icm 97.5 8E-05 1.7E-09 71.5 4.1 29 79-107 132-160 (358)
497 PTZ00035 Rad51 protein; Provis 97.5 3.7E-05 7.9E-10 73.3 1.7 70 77-146 114-197 (337)
498 TIGR00750 lao LAO/AO transport 97.5 5E-05 1.1E-09 70.9 2.5 44 69-112 22-65 (300)
499 PRK13851 type IV secretion sys 97.5 0.00012 2.5E-09 70.1 4.8 39 78-116 159-197 (344)
500 PRK14721 flhF flagellar biosyn 97.5 7.1E-05 1.5E-09 73.3 3.3 28 78-105 188-215 (420)
No 1
>KOG0054|consensus
Probab=100.00 E-value=1.7e-39 Score=345.35 Aligned_cols=173 Identities=48% Similarity=0.773 Sum_probs=157.6
Q ss_pred CCccccCCC---CCCCCCeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEe
Q psy850 2 EEVNVYVSK---PIDKSSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFA 78 (280)
Q Consensus 2 ~~~~~~~~~---~~~~~~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i 78 (280)
||..++... +.+.+.+|+++|++|.|+...+ .+.|+||||+|
T Consensus 500 ~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~-----------------------------------~~tL~dIn~~i 544 (1381)
T KOG0054|consen 500 EELDPDSVERSPDEAGENAIEIKNGSFSWDSESP-----------------------------------EPTLKDINFEI 544 (1381)
T ss_pred cccCccccccCCCCCCCceEEEeeeeEecCCCCC-----------------------------------cccccceeEEe
Confidence 455555543 3345779999999999987311 12599999999
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHHHHHHhhhhh
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNT 158 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~ 158 (280)
++|+++|||||.|||||+||.+|+|+++..+|+|.++|.++||+|.||++++||+|||+||.++++++|.++++.|++..
T Consensus 545 ~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~ 624 (1381)
T KOG0054|consen 545 KKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKK 624 (1381)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 159 DIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 159 ~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+++.+|.||.|+++++|.+|||||||||+||||+|+++||| +||.|+|+.|
T Consensus 625 Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIY------LLDDplSAVD 675 (1381)
T KOG0054|consen 625 DLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIY------LLDDPLSAVD 675 (1381)
T ss_pred HHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEE------EEcCcchhhh
Confidence 99999999999999999999999999999999999999666 8899998876
No 2
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.2e-38 Score=313.50 Aligned_cols=142 Identities=34% Similarity=0.521 Sum_probs=132.6
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------eEEEEecCCCCCCCcHHHHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------TCAYVSQEAWITNDTLRHNIL 137 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------~ig~v~Q~~~l~~~Tv~enI~ 137 (280)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++||+|++++|++|++|||.
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~ 429 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLR 429 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHh
Confidence 79999999999999999999999999999999999999999999998 689999999999999999999
Q ss_pred hCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 138 FGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 138 ~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
++.+ ...++..++++.+.+.+.+..+|+|++|.+++++.+||||||||++|||||+++| ++|||||||+++|.
T Consensus 430 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~------~iliLDE~TSaLD~ 503 (529)
T TIGR02868 430 LGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA------PILLLDEPTEHLDA 503 (529)
T ss_pred ccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccCCH
Confidence 9864 4567778888888888889999999999999999999999999999999999998 77899999999987
Q ss_pred e
Q psy850 217 I 217 (280)
Q Consensus 217 i 217 (280)
-
T Consensus 504 ~ 504 (529)
T TIGR02868 504 G 504 (529)
T ss_pred H
Confidence 3
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=286.42 Aligned_cols=149 Identities=30% Similarity=0.339 Sum_probs=119.0
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------EEEEecCCCCC-CCcHHHHHHh
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------CAYVSQEAWIT-NDTLRHNILF 138 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------ig~v~Q~~~l~-~~Tv~enI~~ 138 (280)
..+|+||||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+ ++||||++.++ +.||++||.+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVAL 95 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhee
Confidence 45899999999999999999999999999999999999999999999883 79999998665 6799999999
Q ss_pred CCCCCh---hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 139 GEPFEP---QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 139 g~~~~~---~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+..... .+....+ ...++.. ++....+++|.+|||||||||+|||||+.+| ++|+|||||++||
T Consensus 96 ~l~~~~~~~~e~~~~a-----~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~~P------~lLLlDEPFgALD 162 (248)
T COG1116 96 GLELRGKSKAEARERA-----KELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALATRP------KLLLLDEPFGALD 162 (248)
T ss_pred hhhccccchHhHHHHH-----HHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhcCC------CEEEEcCCcchhh
Confidence 865421 1111111 1222222 4555667899999999999999999999998 8899999999999
Q ss_pred ceEEEeehhhhhcc
Q psy850 216 SILLMEEVNVYVSK 229 (280)
Q Consensus 216 ~illlDE~~~~~~~ 229 (280)
.+.-..-.+.+++.
T Consensus 163 alTR~~lq~~l~~l 176 (248)
T COG1116 163 ALTREELQDELLRL 176 (248)
T ss_pred HHHHHHHHHHHHHH
Confidence 86554444444443
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-39 Score=283.36 Aligned_cols=152 Identities=26% Similarity=0.272 Sum_probs=119.0
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCC-CCc
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~T 131 (280)
...+|++||++|++||+++||||||||||||||||.++.+|++|+|.++|. +|+|||+..+| +.|
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlT 93 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLT 93 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccch
Confidence 456899999999999999999999999999999999999999999999983 68999998776 789
Q ss_pred HHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 132 LRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 132 v~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
|.||+.++............++.+ ...+.. .+.....+.+|.+|||||||||+|||||+.+| +++++||||
T Consensus 94 vleNv~lap~~v~~~~k~eA~~~A-~~lL~~--VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P------~vmLFDEPT 164 (240)
T COG1126 94 VLENVTLAPVKVKKLSKAEAREKA-LELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAMDP------KVMLFDEPT 164 (240)
T ss_pred HHHHHHhhhHHHcCCCHHHHHHHH-HHHHHH--cCchhhhhhCccccCcHHHHHHHHHHHHcCCC------CEEeecCCc
Confidence 999999863110000011111111 111222 25667788899999999999999999999999 889999999
Q ss_pred CCCCceEEEeehhhhh
Q psy850 212 VSLQSILLMEEVNVYV 227 (280)
Q Consensus 212 ~~l~~illlDE~~~~~ 227 (280)
|+||+-+.-+-.++..
T Consensus 165 SALDPElv~EVL~vm~ 180 (240)
T COG1126 165 SALDPELVGEVLDVMK 180 (240)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9999976655444443
No 5
>KOG0058|consensus
Probab=100.00 E-value=2.4e-38 Score=316.56 Aligned_cols=162 Identities=30% Similarity=0.436 Sum_probs=146.6
Q ss_pred CCCeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCc
Q psy850 14 KSSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSG 93 (280)
Q Consensus 14 ~~~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsG 93 (280)
-...|+++|++|+|++..+ .++|+|+||+|+|||++|||||||+|
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~-----------------------------------~~Vlk~lsfti~pGe~vALVGPSGsG 506 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPD-----------------------------------VPVLKNLSFTIRPGEVVALVGPSGSG 506 (716)
T ss_pred ccceEEEEEeeeecCCCCC-----------------------------------chhhcCceeeeCCCCEEEEECCCCCC
Confidence 3558999999999987532 45899999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHHHHhCCCC-ChhhHHHHHHHhhhhhh
Q psy850 94 KSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHNILFGEPF-EPQRYYKTLYNCALNTD 159 (280)
Q Consensus 94 KSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~enI~~g~~~-~~~~~~~~~~~~~l~~~ 159 (280)
|||+.++|.++|+|++|+|.+||. ||+|.|+|.+|..||+|||.||... ..++...+.+.+...+.
T Consensus 507 KSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~F 586 (716)
T KOG0058|consen 507 KSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEF 586 (716)
T ss_pred HHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHH
Confidence 999999999999999999999993 8999999999999999999999763 34556666666667778
Q ss_pred HhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 160 IHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 160 l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+..+|+++.|.+++++.+||||||||++|||||+++| .+|||||.||+||.
T Consensus 587 I~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P------~VLILDEATSALDa 637 (716)
T KOG0058|consen 587 ITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP------RVLILDEATSALDA 637 (716)
T ss_pred HHhCccccccccCCccccccchHHHHHHHHHHHhcCC------CEEEEechhhhcch
Confidence 8999999999999999999999999999999999999 88999999999986
No 6
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.7e-37 Score=310.75 Aligned_cols=141 Identities=35% Similarity=0.546 Sum_probs=132.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.++| +++||+|++++|++|++||
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 4799999999999999999999999999999999999 9999999998 3899999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
|.++.+ ...++..++++.+.+...+..+|.|++|.+++++.+||||||||++|||||+++| ++|||||||+++
T Consensus 443 I~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~------~IliLDE~TSaL 516 (588)
T PRK11174 443 VLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC------QLLLLDEPTASL 516 (588)
T ss_pred hhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC------CEEEEeCCccCC
Confidence 999964 5677888888888888999999999999999999999999999999999999998 779999999999
Q ss_pred Cc
Q psy850 215 QS 216 (280)
Q Consensus 215 ~~ 216 (280)
|.
T Consensus 517 D~ 518 (588)
T PRK11174 517 DA 518 (588)
T ss_pred CH
Confidence 87
No 7
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=292.53 Aligned_cols=136 Identities=29% Similarity=0.388 Sum_probs=112.6
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~en 135 (280)
..+++||||+|++||+++|+|||||||||+||+|+|+..|++|+|.++|+ +++|||+..+| ++||++|
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~N 97 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEEN 97 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHH
Confidence 45899999999999999999999999999999999999999999999985 79999998665 8999999
Q ss_pred HHhCCCCCh----hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 136 ILFGEPFEP----QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 136 I~~g~~~~~----~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
|.||..... +...+.+.+ .+... +......+++.+|||||||||+|||||+.+| ++|+||||.
T Consensus 98 VafGLk~~~~~~~~~i~~rv~e-----~L~lV--~L~~~~~R~p~qLSGGQqQRVALARAL~~~P------~vLLLDEPl 164 (352)
T COG3842 98 VAFGLKVRKKLKKAEIKARVEE-----ALELV--GLEGFADRKPHQLSGGQQQRVALARALVPEP------KVLLLDEPL 164 (352)
T ss_pred hhhhhhhcCCCCHHHHHHHHHH-----HHHHc--CchhhhhhChhhhChHHHHHHHHHHHhhcCc------chhhhcCcc
Confidence 999976221 112222221 12211 3344567889999999999999999999998 889999999
Q ss_pred CCCCc
Q psy850 212 VSLQS 216 (280)
Q Consensus 212 ~~l~~ 216 (280)
|++|.
T Consensus 165 SaLD~ 169 (352)
T COG3842 165 SALDA 169 (352)
T ss_pred cchhH
Confidence 99975
No 8
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=8.4e-37 Score=311.27 Aligned_cols=142 Identities=31% Similarity=0.445 Sum_probs=133.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|. ++||+|++++|++|++||
T Consensus 467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 546 (686)
T TIGR03797 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFEN 546 (686)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHH
Confidence 4799999999999999999999999999999999999999999999983 799999999999999999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
|.++.+...++..+.++.+.+...+..+|.++++.+++.+.+||||||||++|||||+++| ++|+|||||+++|
T Consensus 547 i~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p------~iLiLDEpTS~LD 620 (686)
T TIGR03797 547 IAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP------RILLFDEATSALD 620 (686)
T ss_pred HhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC------CEEEEeCCccCCC
Confidence 9998776667778888888888889999999999999999999999999999999999998 7899999999997
Q ss_pred c
Q psy850 216 S 216 (280)
Q Consensus 216 ~ 216 (280)
.
T Consensus 621 ~ 621 (686)
T TIGR03797 621 N 621 (686)
T ss_pred H
Confidence 6
No 9
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-37 Score=279.25 Aligned_cols=139 Identities=31% Similarity=0.412 Sum_probs=109.2
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------eEEEEecCC---CCCCCcHHHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------TCAYVSQEA---WITNDTLRHNI 136 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------~ig~v~Q~~---~l~~~Tv~enI 136 (280)
+|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.+.| +||||||.. |-|+.||+|.+
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V 98 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVV 98 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHH
Confidence 79999999999999999999999999999999999999999999876 499999964 56788999999
Q ss_pred HhCCCCChhhHHH--HHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 137 LFGEPFEPQRYYK--TLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 137 ~~g~~~~~~~~~~--~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
.+|+.....++.+ ..+.......++.. +.....+++..+|||||+|||.|||||+++| ++|+||||+.+.
T Consensus 99 ~~g~~~~~g~~~~~~~~d~~~v~~aL~~V--gm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p------~lllLDEP~~gv 170 (254)
T COG1121 99 LLGRYGKKGWFRRLNKKDKEKVDEALERV--GMEDLRDRQIGELSGGQKQRVLLARALAQNP------DLLLLDEPFTGV 170 (254)
T ss_pred HccCcccccccccccHHHHHHHHHHHHHc--CchhhhCCcccccCcHHHHHHHHHHHhccCC------CEEEecCCcccC
Confidence 9986433211110 00011111222222 3445566778889999999999999999998 788999999988
Q ss_pred Cc
Q psy850 215 QS 216 (280)
Q Consensus 215 ~~ 216 (280)
|.
T Consensus 171 D~ 172 (254)
T COG1121 171 DV 172 (254)
T ss_pred CH
Confidence 75
No 10
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-36 Score=333.33 Aligned_cols=160 Identities=48% Similarity=0.825 Sum_probs=150.2
Q ss_pred CeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCcHH
Q psy850 16 SAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKS 95 (280)
Q Consensus 16 ~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKS 95 (280)
..|+++|++|.|+... .+++|+|+||+|++|++++|+||+|||||
T Consensus 613 ~~I~~~nvsf~y~~~~-----------------------------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1622)
T PLN03130 613 PAISIKNGYFSWDSKA-----------------------------------ERPTLSNINLDVPVGSLVAIVGSTGEGKT 657 (1622)
T ss_pred CceEEEeeEEEccCCC-----------------------------------CCceeeceeEEecCCCEEEEECCCCCCHH
Confidence 4799999999997421 12479999999999999999999999999
Q ss_pred HHHHHHHcCCCCCC-ceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccC
Q psy850 96 ALLYAILSQLRSTA-GKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174 (280)
Q Consensus 96 TLLk~I~Gl~~p~~-G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~ 174 (280)
||+++|+|+++|++ |+|.+.++++||+|+||++++|++|||.||.+++.+++.++++.|.+..++..+|.|+.|.++++
T Consensus 658 TLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 658 SLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred HHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 99999999999999 99999999999999999999999999999998888899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 175 GINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 175 ~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+.+|||||||||+||||||++| +++|||||++++|.
T Consensus 738 G~~LSGGQKQRIaLARAly~~~------~IlLLDEptSALD~ 773 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNS------DVYIFDDPLSALDA 773 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCC------CEEEECCCccccCH
Confidence 9999999999999999999998 77899999999985
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.2e-36 Score=308.42 Aligned_cols=162 Identities=33% Similarity=0.475 Sum_probs=145.6
Q ss_pred CCCeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCc
Q psy850 14 KSSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSG 93 (280)
Q Consensus 14 ~~~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsG 93 (280)
-...|+++|++|.|.... ..+|+|+||+|++||++||+|+||||
T Consensus 468 ~~g~I~~~nvsf~y~~~~------------------------------------~~vL~~isL~I~~Ge~vaIvG~SGsG 511 (709)
T COG2274 468 LQGEIEFENVSFRYGPDD------------------------------------PPVLEDLSLEIPPGEKVAIVGRSGSG 511 (709)
T ss_pred cCceEEEEEEEEEeCCCC------------------------------------cchhhceeEEeCCCCEEEEECCCCCC
Confidence 345789999999887642 24799999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHHHHhCCCCCh-hhHHHHHHHhhhhhh
Q psy850 94 KSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHNILFGEPFEP-QRYYKTLYNCALNTD 159 (280)
Q Consensus 94 KSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~enI~~g~~~~~-~~~~~~~~~~~l~~~ 159 (280)
||||+|+|+|+++|+.|+|++||. ++||+|++.+|++|++||+.++.+... ++..+++......+.
T Consensus 512 KSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~f 591 (709)
T COG2274 512 KSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEF 591 (709)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHH
Confidence 999999999999999999999983 899999999999999999999976543 666777777778888
Q ss_pred HhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 160 IHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 160 l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+..+|.|+++.+++.+..||||||||++|||||+++| ++|+|||||+++|..
T Consensus 592 I~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P------~ILlLDEaTSaLD~~ 643 (709)
T COG2274 592 IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP------KILLLDEATSALDPE 643 (709)
T ss_pred HHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC------CEEEEeCcccccCHh
Confidence 9999999999999999999999999999999999998 778999999999863
No 12
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.5e-36 Score=307.56 Aligned_cols=161 Identities=29% Similarity=0.423 Sum_probs=144.6
Q ss_pred CCeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCcH
Q psy850 15 SSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGK 94 (280)
Q Consensus 15 ~~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGK 94 (280)
...|+++|++|.|+... ++++|+|+||+|++||+++|+|||||||
T Consensus 476 ~~~I~~~nVsf~Y~~~~-----------------------------------~~~vL~~isl~i~~Ge~vaIvG~SGsGK 520 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRP-----------------------------------DVPVLKGLTFTLHPGEVVALVGPSGSGK 520 (711)
T ss_pred CCeEEEEEEEEECCCCC-----------------------------------CCccccCceEEEcCCCEEEEECCCCCCH
Confidence 34699999999996421 1247999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHHHHhCCC-CChhhHHHHHHHhhhhhhH
Q psy850 95 SALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHNILFGEP-FEPQRYYKTLYNCALNTDI 160 (280)
Q Consensus 95 STLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~l 160 (280)
|||+++|+|+++|++|+|.++| +++||+|++++|++|++|||.++.+ ...++..+.++.+.+...+
T Consensus 521 STLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i 600 (711)
T TIGR00958 521 STVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFI 600 (711)
T ss_pred HHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999998 3799999999999999999999864 3456677778888888888
Q ss_pred hhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 161 ~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
..+|.+.++.+++.+.+||||||||++|||||+++| ++|||||||+++|.
T Consensus 601 ~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p------~ILILDEpTSaLD~ 650 (711)
T TIGR00958 601 MEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP------RVLILDEATSALDA 650 (711)
T ss_pred HhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC------CEEEEEccccccCH
Confidence 999999999999999999999999999999999998 77999999999987
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.2e-36 Score=307.97 Aligned_cols=142 Identities=29% Similarity=0.466 Sum_probs=131.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++| +++||+|++++|++|++||
T Consensus 493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eN 572 (710)
T TIGR03796 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN 572 (710)
T ss_pred CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHH
Confidence 479999999999999999999999999999999999999999999998 3799999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
|.++.+ ...++..+.++.+.+...+..+|.++++.+++++.+||||||||++|||||+++| ++|+|||||+++
T Consensus 573 i~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p------~iliLDEptS~L 646 (710)
T TIGR03796 573 LTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP------SILILDEATSAL 646 (710)
T ss_pred hhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC------CEEEEECccccC
Confidence 998753 4566777888888888889999999999999999999999999999999999998 789999999999
Q ss_pred Cc
Q psy850 215 QS 216 (280)
Q Consensus 215 ~~ 216 (280)
|.
T Consensus 647 D~ 648 (710)
T TIGR03796 647 DP 648 (710)
T ss_pred CH
Confidence 87
No 14
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.9e-36 Score=299.59 Aligned_cols=142 Identities=32% Similarity=0.472 Sum_probs=132.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++||+|++.+|+.|+++|
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~N 434 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN 434 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHH
Confidence 3799999999999999999999999999999999999999999999983 899999999999999999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
|.++...+.++..+.++.+.+...+..+|.|.++.+++.+.+||||||||++|||||+++| ++|+|||||+++|
T Consensus 435 I~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~------~illlDEpts~LD 508 (592)
T PRK10790 435 VTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP------QILILDEATANID 508 (592)
T ss_pred HHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC------CEEEEeCCcccCC
Confidence 9999766667777888888888889999999999999999999999999999999999998 7899999999997
Q ss_pred c
Q psy850 216 S 216 (280)
Q Consensus 216 ~ 216 (280)
+
T Consensus 509 ~ 509 (592)
T PRK10790 509 S 509 (592)
T ss_pred H
Confidence 7
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.8e-36 Score=275.73 Aligned_cols=142 Identities=30% Similarity=0.392 Sum_probs=110.6
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCC-CCCcHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWI-TNDTLR 133 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l-~~~Tv~ 133 (280)
+.+|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|.++| +++||||.+.. +..||+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~ 94 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVY 94 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEe
Confidence 4589999999999999999999999999999999999999999999998 48999999754 578999
Q ss_pred HHHHhCCCCChhhHH--HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 134 HNILFGEPFEPQRYY--KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 134 enI~~g~~~~~~~~~--~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
|.|.+|+..+..++. ...+.......+..+ +......+...+|||||||||.|||||+++| ++|+|||||
T Consensus 95 d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~--~~~~la~r~~~~LSGGerQrv~iArALaQ~~------~iLLLDEPT 166 (258)
T COG1120 95 ELVLLGRYPHLGLFGRPSKEDEEIVEEALELL--GLEHLADRPVDELSGGERQRVLIARALAQET------PILLLDEPT 166 (258)
T ss_pred ehHhhcCCcccccccCCCHhHHHHHHHHHHHh--CcHHHhcCcccccChhHHHHHHHHHHHhcCC------CEEEeCCCc
Confidence 999999754322111 000000111112211 3334445666789999999999999999998 789999999
Q ss_pred CCCCce
Q psy850 212 VSLQSI 217 (280)
Q Consensus 212 ~~l~~i 217 (280)
+.||--
T Consensus 167 s~LDi~ 172 (258)
T COG1120 167 SHLDIA 172 (258)
T ss_pred cccCHH
Confidence 999753
No 16
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6e-36 Score=299.08 Aligned_cols=143 Identities=34% Similarity=0.469 Sum_probs=132.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+|+.|+++|
T Consensus 357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 436 (582)
T PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN 436 (582)
T ss_pred ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHH
Confidence 4799999999999999999999999999999999999999999999983 799999999999999999
Q ss_pred HHhCCC--CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 136 ILFGEP--FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 136 I~~g~~--~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
|.++.+ ...++..+.++.+.+...+..+|.|+++.+++.+.+||||||||++|||||+++| ++|||||||++
T Consensus 437 i~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~------~ililDEptsa 510 (582)
T PRK11176 437 IAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS------PILILDEATSA 510 (582)
T ss_pred HhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC------CEEEEECcccc
Confidence 999853 4566777788878888888999999999999999999999999999999999998 78999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|+.
T Consensus 511 LD~~ 514 (582)
T PRK11176 511 LDTE 514 (582)
T ss_pred CCHH
Confidence 9873
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-36 Score=283.79 Aligned_cols=135 Identities=33% Similarity=0.439 Sum_probs=112.7
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNIL 137 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI~ 137 (280)
++++|||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|+ +++|||+..++ ++||++||.
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 799999999999999999999999999999999999999999999984 89999997655 789999999
Q ss_pred hCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 138 FGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 138 ~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
|+.... ++...+.+.+.. ..+ +....++++|.+|||||||||+|||||+++| +++++|||.|++
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva-----~~L--~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P------~v~L~DEPlSnL 164 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVA-----KLL--GLEHLLNRKPLQLSGGQRQRVALARALVRKP------KVFLLDEPLSNL 164 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHH-----HHc--CChhHHhcCcccCChhhHHHHHHHHHHhcCC------CEEEecCchhHh
Confidence 986543 233333333222 111 3455678889999999999999999999999 778999999988
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|.=
T Consensus 165 Da~ 167 (338)
T COG3839 165 DAK 167 (338)
T ss_pred hHH
Confidence 753
No 18
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-36 Score=266.73 Aligned_cols=154 Identities=23% Similarity=0.317 Sum_probs=119.1
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----ceEEECCe---------------EEEEecCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTA-----GKLSREGT---------------CAYVSQEAWI 127 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~-----G~I~i~G~---------------ig~v~Q~~~l 127 (280)
+.+|++||++|++++++|+|||||||||||||++.++....+ |+|.++|+ +|+|||.|..
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 357999999999999999999999999999999999988765 99999883 7999999999
Q ss_pred CCCcHHHHHHhCCCCCh---hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 128 TNDTLRHNILFGEPFEP---QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 128 ~~~Tv~enI~~g~~~~~---~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
|++|++|||.+|...+. ....+.++.+.....+ +. .-...+++.+..||||||||++|||||+.+| ++
T Consensus 100 Fp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaL--Wd-EVKDrL~~sa~~LSGGQQQRLcIARalAv~P------eV 170 (253)
T COG1117 100 FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAAL--WD-EVKDRLHKSALGLSGGQQQRLCIARALAVKP------EV 170 (253)
T ss_pred CCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHh--HH-HhHHHhhCCccCCChhHHHHHHHHHHHhcCC------cE
Confidence 99999999999854321 1222222222111111 10 0123345667789999999999999999998 78
Q ss_pred hhhccccCCCCceEEEeehhhhhccC
Q psy850 205 LVLLCPCVSLQSILLMEEVNVYVSKP 230 (280)
Q Consensus 205 l~ldep~~~l~~illlDE~~~~~~~~ 230 (280)
|++|||||+||+|--+..-.++...+
T Consensus 171 lLmDEPtSALDPIsT~kIEeLi~eLk 196 (253)
T COG1117 171 LLMDEPTSALDPISTLKIEELITELK 196 (253)
T ss_pred EEecCcccccCchhHHHHHHHHHHHH
Confidence 99999999999987765555555544
No 19
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.6e-36 Score=326.94 Aligned_cols=160 Identities=47% Similarity=0.792 Sum_probs=147.7
Q ss_pred CeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCcHH
Q psy850 16 SAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKS 95 (280)
Q Consensus 16 ~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKS 95 (280)
..|+++|++|.|+... .+++|+|+||+|++|++++|+||+|||||
T Consensus 613 ~~I~~~~vsF~y~~~~-----------------------------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1495)
T PLN03232 613 PAISIKNGYFSWDSKT-----------------------------------SKPTLSDINLEIPVGSLVAIVGGTGEGKT 657 (1495)
T ss_pred CcEEEEeeEEEcCCCC-----------------------------------CCceeeeeEEEEcCCCEEEEECCCCCcHH
Confidence 4799999999997421 12479999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCce-EEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccC
Q psy850 96 ALLYAILSQLRSTAGK-LSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174 (280)
Q Consensus 96 TLLk~I~Gl~~p~~G~-I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~ 174 (280)
||+++|+|+++|++|. +.+.++++||+|+||+++.|++|||.||.+++.+++.++++.|.+..++..+|.|+.|.++++
T Consensus 658 TLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~ 737 (1495)
T PLN03232 658 SLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGER 737 (1495)
T ss_pred HHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCC
Confidence 9999999999999975 567889999999999999999999999998888899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 175 GINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 175 ~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+.+|||||||||+||||++++| ++++||||++++|.
T Consensus 738 G~~LSGGQkQRIaLARAly~~~------~IlLLDEptSaLD~ 773 (1495)
T PLN03232 738 GVNISGGQKQRVSMARAVYSNS------DIYIFDDPLSALDA 773 (1495)
T ss_pred CcccCHHHHHHHHHHHHHhcCC------CEEEEcCCccccCH
Confidence 9999999999999999999998 77899999999985
No 20
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.4e-36 Score=269.20 Aligned_cols=139 Identities=30% Similarity=0.360 Sum_probs=107.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCCCC-CC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEAWI-TN 129 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~~l-~~ 129 (280)
..+|++|||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|. +|||||+..+ +.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 35899999999999999999999999999999999999999999999982 8999999765 57
Q ss_pred CcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhc-cCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIG-ERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 130 ~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~-~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
.|+.|||.+...+......... ......+..+ +...... ++|.+|||||||||+|||||+.+| ++|++|
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~--~~~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P------~iilAD 167 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRK--RAAEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIARALINNP------KIILAD 167 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHH--HHHHHHHHhc--CChhhhccCCchhcCHHHHHHHHHHHHHhcCC------CeEEee
Confidence 8999999964322111110000 0011111111 2332333 679999999999999999999998 889999
Q ss_pred cccCCCCc
Q psy850 209 CPCVSLQS 216 (280)
Q Consensus 209 ep~~~l~~ 216 (280)
|||+++|.
T Consensus 168 EPTgnLD~ 175 (226)
T COG1136 168 EPTGNLDS 175 (226)
T ss_pred CccccCCh
Confidence 99999975
No 21
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.3e-35 Score=302.85 Aligned_cols=143 Identities=35% Similarity=0.518 Sum_probs=133.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++| +++||+|++++|++|++||
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eN 558 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN 558 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHH
Confidence 479999999999999999999999999999999999999999999998 3899999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
|.++.+ ...++..+.++.+.+...+..+|.+++|.+++++.+||||||||++|||||+++| ++|||||||+++
T Consensus 559 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p------~iliLDE~Ts~L 632 (694)
T TIGR03375 559 IALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP------PILLLDEPTSAM 632 (694)
T ss_pred HhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC------CEEEEeCCCCCC
Confidence 999875 5667778888888888889999999999999999999999999999999999998 789999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 633 D~~ 635 (694)
T TIGR03375 633 DNR 635 (694)
T ss_pred CHH
Confidence 873
No 22
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.4e-35 Score=296.13 Aligned_cols=144 Identities=38% Similarity=0.526 Sum_probs=132.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||++++||.+||+|||||||||++++|+|+++|++|+|.++|. ++||+|++++|+.|+++|
T Consensus 343 ~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~N 422 (567)
T COG1132 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422 (567)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHH
Confidence 5799999999999999999999999999999999999999999999883 799999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
|.+|++ ...++..++++.+...+.+..+|++.++.+++++..||||||||++||||++.+| ++|||||||+++
T Consensus 423 I~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~------~ILILDEaTSal 496 (567)
T COG1132 423 IALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP------PILILDEATSAL 496 (567)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC------CEEEEecccccc
Confidence 999986 3556777777777777888888999999999999999999999999999999998 779999999999
Q ss_pred CceE
Q psy850 215 QSIL 218 (280)
Q Consensus 215 ~~il 218 (280)
|..-
T Consensus 497 D~~t 500 (567)
T COG1132 497 DTET 500 (567)
T ss_pred CHHh
Confidence 8853
No 23
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.6e-35 Score=302.93 Aligned_cols=143 Identities=33% Similarity=0.492 Sum_probs=131.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|. ++||+|++++|++|++||
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 567 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN 567 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence 4799999999999999999999999999999999999999999999983 799999999999999999
Q ss_pred HHhCC--CCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 136 ILFGE--PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 136 I~~g~--~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
|.++. ....++..+.++.+.+...+..+|.++++.+++.+.+||||||||++|||||+++| ++|||||||++
T Consensus 568 i~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p------~iliLDE~Ts~ 641 (708)
T TIGR01193 568 LLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS------KVLILDESTSN 641 (708)
T ss_pred HhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC------CEEEEeCcccc
Confidence 99983 34456677777777788888899999999999999999999999999999999998 78999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|.-
T Consensus 642 LD~~ 645 (708)
T TIGR01193 642 LDTI 645 (708)
T ss_pred CCHH
Confidence 9873
No 24
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.3e-35 Score=291.98 Aligned_cols=143 Identities=35% Similarity=0.529 Sum_probs=131.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++||+|++++|++|++||
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~N 415 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN 415 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHH
Confidence 4799999999999999999999999999999999999999999999983 899999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.+ ...++..+.++.+.+...+..+|.|.++.+++++.+||||||||++|||||+++| ++|+|||||+++
T Consensus 416 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~------~ililDE~ts~l 489 (529)
T TIGR02857 416 IRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA------PLLLLDEPTAHL 489 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC------CEEEEeCccccc
Confidence 999764 3455667777777888888999999999999999999999999999999999998 778999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|.-
T Consensus 490 D~~ 492 (529)
T TIGR02857 490 DAE 492 (529)
T ss_pred CHH
Confidence 874
No 25
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2e-35 Score=294.21 Aligned_cols=144 Identities=34% Similarity=0.466 Sum_probs=133.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|++|++++|++|++||
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 425 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN 425 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHH
Confidence 4799999999999999999999999999999999999999999999983 799999999999999999
Q ss_pred HHhCC--CCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 136 ILFGE--PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 136 I~~g~--~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
|.++. ....++..+.++.+.+...+..+|.|.++.+++.+..||||||||++||||++++| ++++|||||++
T Consensus 426 i~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~------~illLDEpts~ 499 (571)
T TIGR02203 426 IAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA------PILILDEATSA 499 (571)
T ss_pred HhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC------CEEEEeCcccc
Confidence 99985 35667778888888888888999999999999999999999999999999999998 77899999999
Q ss_pred CCceE
Q psy850 214 LQSIL 218 (280)
Q Consensus 214 l~~il 218 (280)
+|...
T Consensus 500 LD~~~ 504 (571)
T TIGR02203 500 LDNES 504 (571)
T ss_pred CCHHH
Confidence 98743
No 26
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.1e-35 Score=255.68 Aligned_cols=143 Identities=55% Similarity=0.910 Sum_probs=122.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYY 148 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~ 148 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++|++|++.+++.|+++|+.++......+..
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~ 98 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYE 98 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999988889999999987544333333
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.....+.+...+..++.+..+.+.+++.+||+|||||++|||||+.+| +++++|||++++|.-
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p------~llllDEP~~~LD~~ 161 (204)
T cd03250 99 KVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA------DIYLLDDPLSAVDAH 161 (204)
T ss_pred HHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC------CEEEEeCccccCCHH
Confidence 333334455556666666777777888899999999999999999998 889999999999874
No 27
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-36 Score=268.51 Aligned_cols=141 Identities=27% Similarity=0.331 Sum_probs=112.7
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCC-CCcHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWIT-NDTLR 133 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~-~~Tv~ 133 (280)
+.+++|+||+|++||+++++|||||||||+||+|.++++|++|+|+++|. ||||-|..-+| ++||.
T Consensus 14 ~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~ 93 (309)
T COG1125 14 KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVA 93 (309)
T ss_pred ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHH
Confidence 45899999999999999999999999999999999999999999999983 89999997554 88999
Q ss_pred HHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
|||.+-... .+++..+... +.+............++|++|||||||||.+||||+.+| .+|++|||
T Consensus 94 eNIa~VP~L~~w~k~~i~~r~~-----ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP------~ilLMDEP 162 (309)
T COG1125 94 ENIATVPKLLGWDKERIKKRAD-----ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP------PILLMDEP 162 (309)
T ss_pred HHHHhhhhhcCCCHHHHHHHHH-----HHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC------CeEeecCC
Confidence 999864221 1222222222 222222111224567899999999999999999999998 77999999
Q ss_pred cCCCCceEE
Q psy850 211 CVSLQSILL 219 (280)
Q Consensus 211 ~~~l~~ill 219 (280)
|+++|+|..
T Consensus 163 FgALDpI~R 171 (309)
T COG1125 163 FGALDPITR 171 (309)
T ss_pred ccccChhhH
Confidence 999988653
No 28
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=273.66 Aligned_cols=142 Identities=31% Similarity=0.364 Sum_probs=112.1
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCC-CCc
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~T 131 (280)
...+++||+|+|+.||+++++||||||||||||+|+|+..|+.|.|.++|+ ||||||+..+| ++|
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hmt 93 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMT 93 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccch
Confidence 456899999999999999999999999999999999999999999999984 79999998655 899
Q ss_pred HHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 132 LRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 132 v~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
|.+||+||......+..+.-......+.+... .+....+++|.+|||||||||+|||||+.+| ++|+||||+
T Consensus 94 Va~NIAFGl~~~~~~p~~~~~r~rv~elL~lv--qL~~la~ryP~QLSGGQrQRVALARALA~eP------~vLLLDEPf 165 (345)
T COG1118 94 VADNIAFGLKVRKERPSEAEIRARVEELLRLV--QLEGLADRYPAQLSGGQRQRVALARALAVEP------KVLLLDEPF 165 (345)
T ss_pred HHhhhhhcccccccCCChhhHHHHHHHHHHHh--cccchhhcCchhcChHHHHHHHHHHHhhcCC------CeEeecCCc
Confidence 99999999754321111111111111112221 2233456789999999999999999999998 889999999
Q ss_pred CCCCc
Q psy850 212 VSLQS 216 (280)
Q Consensus 212 ~~l~~ 216 (280)
+++|.
T Consensus 166 ~ALDa 170 (345)
T COG1118 166 GALDA 170 (345)
T ss_pred hhhhH
Confidence 99864
No 29
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.9e-35 Score=291.02 Aligned_cols=142 Identities=28% Similarity=0.418 Sum_probs=130.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++||+|++++|+.|++||
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 433 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN 433 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHH
Confidence 4799999999999999999999999999999999999999999999983 799999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.+ ...++..+.++.+.+...+.. |.|++|.+++++.+||||||||++|||||+++| ++|+|||||+++
T Consensus 434 i~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~------~ililDE~ts~l 506 (574)
T PRK11160 434 LLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA------PLLLLDEPTEGL 506 (574)
T ss_pred hhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccC
Confidence 999864 345566777777778888888 999999999999999999999999999999998 789999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 507 D~~ 509 (574)
T PRK11160 507 DAE 509 (574)
T ss_pred CHH
Confidence 874
No 30
>KOG0055|consensus
Probab=100.00 E-value=2.9e-35 Score=308.10 Aligned_cols=159 Identities=33% Similarity=0.476 Sum_probs=143.8
Q ss_pred eEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHH
Q psy850 17 AVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSA 96 (280)
Q Consensus 17 ~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKST 96 (280)
.|+++|++|.|++.++ .++|+|+||+|++|+.+||||||||||||
T Consensus 987 ~I~~~~V~F~YPsRP~-----------------------------------~~Il~~l~l~i~~GqTvALVG~SGsGKST 1031 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPD-----------------------------------VPVLNNLSLSIRAGQTVALVGPSGSGKST 1031 (1228)
T ss_pred EEEEeeeEeeCCCCCC-----------------------------------chhhcCCcEEecCCCEEEEECCCCCCHHH
Confidence 6999999999986532 45899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHHHHhCC-CCChhhHHHHHHHhhhhhhHhh
Q psy850 97 LLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHNILFGE-PFEPQRYYKTLYNCALNTDIHI 162 (280)
Q Consensus 97 LLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~enI~~g~-~~~~~~~~~~~~~~~l~~~l~~ 162 (280)
.+.+|-++|+|++|.|.+||+ +|.|.|+|.+|+.|++|||+||. ....++..++++.+.....+..
T Consensus 1032 vI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~s 1111 (1228)
T KOG0055|consen 1032 VISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISS 1111 (1228)
T ss_pred HHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhc
Confidence 999999999999999999983 79999999999999999999993 3345566667766677788889
Q ss_pred CCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 163 LPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 163 l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+|+|++|.+++++.+||||||||++|||||+++| ++|+|||.||+||.
T Consensus 1112 LP~GyDT~vGerG~QLSGGQKQRIAIARAilRnP------kILLLDEATSALDs 1159 (1228)
T KOG0055|consen 1112 LPQGYDTRVGERGVQLSGGQKQRIAIARAILRNP------KILLLDEATSALDS 1159 (1228)
T ss_pred CcCcccCccCcccCcCCchHHHHHHHHHHHHcCC------Ceeeeeccchhhhh
Confidence 9999999999999999999999999999999999 88899999999875
No 31
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.4e-34 Score=290.12 Aligned_cols=143 Identities=31% Similarity=0.459 Sum_probs=130.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++.+|++|+++|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N 428 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDN 428 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHH
Confidence 379999999999999999999999999999999999999999999998 3899999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.+ ...++....++.+.+...+..+|.+.++.+++.+..||||||||++|||||+++| ++|||||||+++
T Consensus 429 i~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~------~iliLDEpts~L 502 (588)
T PRK13657 429 IRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP------PILILDEATSAL 502 (588)
T ss_pred HhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC------CEEEEeCCccCC
Confidence 999863 3455666777777778888889999999999999999999999999999999998 789999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 503 D~~ 505 (588)
T PRK13657 503 DVE 505 (588)
T ss_pred CHH
Confidence 873
No 32
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-35 Score=270.34 Aligned_cols=136 Identities=31% Similarity=0.384 Sum_probs=113.6
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCCCC-C
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWITN-D 130 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l~~-~ 130 (280)
..+|+||||+|++||++||||.||||||||+|||.++.+|++|+|.++|. ||++||++.++. .
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 35899999999999999999999999999999999999999999999983 899999998774 7
Q ss_pred cHHHHHHhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 131 TLRHNILFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 131 Tv~enI~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
||++||+|..... +.+..+++. +.++.. ++....+.+|.+|||||||||+|||||+.+| ++|+.
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~-----elLelV--gL~dk~~~yP~qLSGGQKQRVaIARALa~~P------~iLL~ 165 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVA-----ELLELV--GLSDKADRYPAQLSGGQKQRVAIARALANNP------KILLC 165 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHH-----HHHHHc--CChhhhccCchhcCcchhhHHHHHHHHhcCC------CEEEe
Confidence 9999999975432 222222221 122222 4556778899999999999999999999998 88999
Q ss_pred ccccCCCCc
Q psy850 208 LCPCVSLQS 216 (280)
Q Consensus 208 dep~~~l~~ 216 (280)
|||||+||+
T Consensus 166 DEaTSALDP 174 (339)
T COG1135 166 DEATSALDP 174 (339)
T ss_pred cCccccCCh
Confidence 999999986
No 33
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.1e-34 Score=289.34 Aligned_cols=143 Identities=31% Similarity=0.471 Sum_probs=130.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++| .++|+||++++|++|++||
T Consensus 354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N 433 (576)
T TIGR02204 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMEN 433 (576)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHH
Confidence 479999999999999999999999999999999999999999999998 3799999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.+ ...++....++.+.+...+..+|.+..+.+++.+..||||||||++||||++++| ++|++||||+++
T Consensus 434 i~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~------~ililDEpts~l 507 (576)
T TIGR02204 434 IRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA------PILLLDEATSAL 507 (576)
T ss_pred HhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC------CeEEEeCccccc
Confidence 999764 3455666777777777788889999999999999999999999999999999998 789999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 508 D~~ 510 (576)
T TIGR02204 508 DAE 510 (576)
T ss_pred CHH
Confidence 875
No 34
>KOG0055|consensus
Probab=100.00 E-value=4e-35 Score=307.06 Aligned_cols=162 Identities=32% Similarity=0.460 Sum_probs=143.1
Q ss_pred CCCeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCc
Q psy850 14 KSSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSG 93 (280)
Q Consensus 14 ~~~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsG 93 (280)
....|+++|++|.|++..+ ..+|+++||.|++|+.++||||||||
T Consensus 347 ~~g~ief~nV~FsYPsRpd-----------------------------------v~Il~g~sl~i~~G~~valVG~SGsG 391 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPD-----------------------------------VKILKGVSLKIPSGQTVALVGPSGSG 391 (1228)
T ss_pred cccceEEEEEEecCCCCCc-----------------------------------chhhCCeEEEeCCCCEEEEECCCCCC
Confidence 3557888888888876431 35799999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHHHHhCCCC-ChhhHHHHHHHhhhhhh
Q psy850 94 KSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHNILFGEPF-EPQRYYKTLYNCALNTD 159 (280)
Q Consensus 94 KSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~enI~~g~~~-~~~~~~~~~~~~~l~~~ 159 (280)
|||++++|.+++.|++|+|.++| +||.|+|+|.+|..|++|||.||.+. ..++..+..+.......
T Consensus 392 KST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~f 471 (1228)
T KOG0055|consen 392 KSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDF 471 (1228)
T ss_pred HHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHH
Confidence 99999999999999999999998 38999999999999999999999854 34455555555556677
Q ss_pred HhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 160 IHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 160 l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+..+|.++.|.+++++.+|||||||||+|||||+++| ++|+|||||++||.
T Consensus 472 i~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P------~ILLLDEaTSaLD~ 522 (1228)
T KOG0055|consen 472 ILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNP------KILLLDEATSALDA 522 (1228)
T ss_pred HHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCC------CEEEecCcccccCH
Confidence 8889999999999999999999999999999999998 78999999999986
No 35
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.4e-35 Score=316.58 Aligned_cols=161 Identities=30% Similarity=0.392 Sum_probs=144.3
Q ss_pred CeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCcHH
Q psy850 16 SAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKS 95 (280)
Q Consensus 16 ~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKS 95 (280)
..|+++|++|.|+... +.++|+|+||+|++|+++|||||||||||
T Consensus 1164 g~I~f~nVsF~Y~~~~-----------------------------------~~~vL~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRP-----------------------------------NVPIYKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred ceEEEEEEEEECCCCC-----------------------------------CCccccCeeEEEcCCCEEEEECCCCCCHH
Confidence 4699999999996421 12479999999999999999999999999
Q ss_pred HHHHHHHcCCCC------------------------------------------------------CCceEEECCe----
Q psy850 96 ALLYAILSQLRS------------------------------------------------------TAGKLSREGT---- 117 (280)
Q Consensus 96 TLLk~I~Gl~~p------------------------------------------------------~~G~I~i~G~---- 117 (280)
||+++|+|+++| ++|+|.++|.
T Consensus 1209 Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~ 1288 (1466)
T PTZ00265 1209 TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICD 1288 (1466)
T ss_pred HHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHh
Confidence 999999999998 6999999983
Q ss_pred ---------EEEEecCCCCCCCcHHHHHHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHH
Q psy850 118 ---------CAYVSQEAWITNDTLRHNILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVA 187 (280)
Q Consensus 118 ---------ig~v~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~ 187 (280)
++||+|+|.+|++|++|||.+|.+ ...++..++++.+.+...+..+|.|++|.+++++.+||||||||++
T Consensus 1289 ~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIa 1368 (1466)
T PTZ00265 1289 YNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA 1368 (1466)
T ss_pred CCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHH
Confidence 799999999999999999999964 4456677777777788889999999999999999999999999999
Q ss_pred HHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 188 LARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 188 LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
|||||+++| ++|||||||+++|..
T Consensus 1369 IARALlr~p------~ILLLDEaTSaLD~~ 1392 (1466)
T PTZ00265 1369 IARALLREP------KILLLDEATSSLDSN 1392 (1466)
T ss_pred HHHHHhcCC------CEEEEeCcccccCHH
Confidence 999999998 889999999999873
No 36
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-35 Score=260.39 Aligned_cols=174 Identities=25% Similarity=0.346 Sum_probs=130.5
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------------eEEEEecCCCCC-
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------------TCAYVSQEAWIT- 128 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------------~ig~v~Q~~~l~- 128 (280)
+++.+|++|||+|++||+++||||||||||||||+|.|+.+|++|+|.++| ++||+||.+.+.
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~ 94 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVP 94 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccc
Confidence 356789999999999999999999999999999999999999999999998 389999998765
Q ss_pred CCcHHHHHHhCCCCChhhHHHHHHH------hhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPFEPQRYYKTLYN------CALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~~~~~~~~~~~------~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
..+|.+||+.|+..+...+...+.- ......++.+ +.......+..+|||||||||+|||||+++|
T Consensus 95 r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv--gi~~~A~qra~~LSGGQQQRVaIARaL~Q~p------ 166 (258)
T COG3638 95 RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV--GILDKAYQRASTLSGGQQQRVAIARALVQQP------ 166 (258)
T ss_pred ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc--CcHHHHHHHhccCCcchhHHHHHHHHHhcCC------
Confidence 6799999999864433322222110 0011112222 4445566788899999999999999999998
Q ss_pred hhhhhccccCCCCce-------------------EEEeehhhhhccCcccceeEEecCCeeeeee
Q psy850 203 HFLVLLCPCVSLQSI-------------------LLMEEVNVYVSKPIDKSSAVSIAGGSFLWDT 248 (280)
Q Consensus 203 ~ll~ldep~~~l~~i-------------------lllDE~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (280)
+++++|||+++||+. +++--+++-+...... -++-|..|...+|-
T Consensus 167 kiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~-Riigl~~G~ivfDg 230 (258)
T COG3638 167 KIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYAD-RIIGLKAGRIVFDG 230 (258)
T ss_pred CEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHh-hheEecCCcEEEeC
Confidence 889999999999864 2333334444444444 56777777777763
No 37
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.4e-35 Score=260.35 Aligned_cols=144 Identities=28% Similarity=0.354 Sum_probs=114.2
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------------eEEEEecCCCCC-CC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------------TCAYVSQEAWIT-ND 130 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------------~ig~v~Q~~~l~-~~ 130 (280)
+.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|+++| ++|++||...+| ..
T Consensus 21 ~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssl 100 (263)
T COG1127 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSL 100 (263)
T ss_pred EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecccccccc
Confidence 5689999999999999999999999999999999999999999999998 279999998877 67
Q ss_pred cHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchh-hccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 131 TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTE-IGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 131 Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~-i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
||+|||.|....+..-..+.+++..+ ..++. .|+... ...+|.+|||||++|++|||||+.+| ++|++||
T Consensus 101 tV~eNVafplre~~~lp~~~i~~lv~-~KL~~--VGL~~~~~~~~PsELSGGM~KRvaLARAialdP------ell~~DE 171 (263)
T COG1127 101 TVFENVAFPLREHTKLPESLIRELVL-MKLEL--VGLRGAAADLYPSELSGGMRKRVALARAIALDP------ELLFLDE 171 (263)
T ss_pred chhHhhheehHhhccCCHHHHHHHHH-HHHHh--cCCChhhhhhCchhhcchHHHHHHHHHHHhcCC------CEEEecC
Confidence 99999998643211111111111111 11221 133333 56789999999999999999999998 8899999
Q ss_pred ccCCCCceEEE
Q psy850 210 PCVSLQSILLM 220 (280)
Q Consensus 210 p~~~l~~illl 220 (280)
||+++|+|-.-
T Consensus 172 PtsGLDPI~a~ 182 (263)
T COG1127 172 PTSGLDPISAG 182 (263)
T ss_pred CCCCCCcchHH
Confidence 99999997543
No 38
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6e-35 Score=253.51 Aligned_cols=157 Identities=27% Similarity=0.364 Sum_probs=122.1
Q ss_pred ccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------------eEEEEecC
Q psy850 61 KAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------------TCAYVSQE 124 (280)
Q Consensus 61 ~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------------~ig~v~Q~ 124 (280)
+..|.+++.+|+||||+|++||++.|+||||||||||||+|++..+|+.|+|+++| +||+|||+
T Consensus 8 ~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD 87 (223)
T COG2884 8 SKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQD 87 (223)
T ss_pred hhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeee
Confidence 33444456699999999999999999999999999999999999999999999987 38999999
Q ss_pred CCC-CCCcHHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhh
Q psy850 125 AWI-TNDTLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQ 200 (280)
Q Consensus 125 ~~l-~~~Tv~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~ 200 (280)
..+ .+.||+|||+|.... ....+.+.+.+. ++. .++.......|.+|||||||||+||||++.+|
T Consensus 88 ~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~-----L~~--VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P---- 156 (223)
T COG2884 88 FRLLPDRTVYENVALPLRVIGKPPREIRRRVSEV-----LDL--VGLKHKARALPSQLSGGEQQRVAIARAIVNQP---- 156 (223)
T ss_pred ccccccchHhhhhhhhhhccCCCHHHHHHHHHHH-----HHH--hccchhhhcCccccCchHHHHHHHHHHHccCC----
Confidence 854 578999999987532 222333333211 111 13444556678899999999999999999998
Q ss_pred hhhhhhhccccCCCCceEEEeehhhhhccC
Q psy850 201 TFHFLVLLCPCVSLQSILLMEEVNVYVSKP 230 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~illlDE~~~~~~~~ 230 (280)
++|++||||+++|+-+=.+..+++...+
T Consensus 157 --~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 157 --AVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred --CeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 8899999999999855444445544443
No 39
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.9e-34 Score=284.64 Aligned_cols=143 Identities=34% Similarity=0.461 Sum_probs=129.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++++++.|++||
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 411 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN 411 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHH
Confidence 4799999999999999999999999999999999999999999999873 799999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.+ ...++....++.+.+...+..+|.++.+.+++++.+||||||||++|||||+++| ++|||||||+++
T Consensus 412 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~------~ililDEpts~L 485 (544)
T TIGR01842 412 IARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP------KLVVLDEPNSNL 485 (544)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccc
Confidence 987653 4455666666666777788889999999999999999999999999999999998 789999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|.-
T Consensus 486 D~~ 488 (544)
T TIGR01842 486 DEE 488 (544)
T ss_pred CHH
Confidence 864
No 40
>KOG0057|consensus
Probab=100.00 E-value=1.5e-34 Score=281.90 Aligned_cols=154 Identities=35% Similarity=0.503 Sum_probs=135.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRH 134 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~e 134 (280)
+++|+++||+|++||.+||+|+|||||||++|+|+++++ ++|+|+++|+ ||||||+..+|+.||..
T Consensus 365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~ 443 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILY 443 (591)
T ss_pred CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHH
Confidence 458999999999999999999999999999999999999 9999999994 89999999999999999
Q ss_pred HHHhCCCC-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 135 NILFGEPF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 135 nI~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
||.+|... ..++..+..+...+.+.+..+|+|..|.+++++..|||||||||+||||++.+| .++++|||||+
T Consensus 444 NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda------~Il~~DEaTS~ 517 (591)
T KOG0057|consen 444 NIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA------PILLLDEATSA 517 (591)
T ss_pred HhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC------CeEEecCcccc
Confidence 99999764 345566666667778888899999999999999999999999999999999999 56799999999
Q ss_pred CCceEEEeehhhhhc
Q psy850 214 LQSILLMEEVNVYVS 228 (280)
Q Consensus 214 l~~illlDE~~~~~~ 228 (280)
+|..-=-|-+..+++
T Consensus 518 LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 518 LDSETEREILDMIMD 532 (591)
T ss_pred cchhhHHHHHHHHHH
Confidence 987543334444444
No 41
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.7e-34 Score=313.13 Aligned_cols=142 Identities=49% Similarity=0.844 Sum_probs=134.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYY 148 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~ 148 (280)
++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++||+|++|+++.|++|||.+|..++.+++.
T Consensus 652 ~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~ 731 (1522)
T TIGR00957 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQ 731 (1522)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999877777777
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+.++.|.+..++..+|.++.+.+++++.+|||||||||+|||||+++| ++++||||++++|.
T Consensus 732 ~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~------~illLDEp~saLD~ 793 (1522)
T TIGR00957 732 QVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA------DIYLFDDPLSAVDA 793 (1522)
T ss_pred HHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCC------CEEEEcCCccccCH
Confidence 888888888889999999999999999999999999999999999998 77899999999976
No 42
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.8e-34 Score=284.15 Aligned_cols=143 Identities=38% Similarity=0.579 Sum_probs=128.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+|+.|++||
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 408 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN 408 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHH
Confidence 4799999999999999999999999999999999999999999999873 799999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.+ ...++....++.+.+...+..+|.+..+.+++++.+||||||||++|||||+++| ++|+||||++++
T Consensus 409 i~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~------~illlDEpts~L 482 (569)
T PRK10789 409 IALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA------EILILDDALSAV 482 (569)
T ss_pred HhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC------CEEEEECccccC
Confidence 999854 3455566666666667777888999999999999999999999999999999998 789999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|.-
T Consensus 483 D~~ 485 (569)
T PRK10789 483 DGR 485 (569)
T ss_pred CHH
Confidence 763
No 43
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-34 Score=278.85 Aligned_cols=150 Identities=37% Similarity=0.530 Sum_probs=134.0
Q ss_pred cccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCC
Q psy850 60 LKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAW 126 (280)
Q Consensus 60 l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~ 126 (280)
+++.+-+++++++|+||++++|+.++|+|+||||||||+++|+|+.+|+.|+|.++| +++||+|+|.
T Consensus 326 l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~ 405 (559)
T COG4988 326 LSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405 (559)
T ss_pred eEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCc
Confidence 444444445789999999999999999999999999999999999999999999997 3899999999
Q ss_pred CCCCcHHHHHHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 127 ITNDTLRHNILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 127 l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
+++.|++|||.++++ ...+...+.++...+...+.. |.|.++.+++++..|||||+|||+|||||++++ +++
T Consensus 406 lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~------~l~ 478 (559)
T COG4988 406 LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA------SLL 478 (559)
T ss_pred cccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC------CEE
Confidence 999999999999976 345667778887788777777 889999999999999999999999999999998 778
Q ss_pred hhccccCCCCc
Q psy850 206 VLLCPCVSLQS 216 (280)
Q Consensus 206 ~ldep~~~l~~ 216 (280)
++||||+++|.
T Consensus 479 llDEpTA~LD~ 489 (559)
T COG4988 479 LLDEPTAHLDA 489 (559)
T ss_pred EecCCccCCCH
Confidence 99999999864
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.3e-33 Score=308.14 Aligned_cols=143 Identities=38% Similarity=0.731 Sum_probs=134.8
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRY 147 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~ 147 (280)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.++||+|++|+++.|++|||.|+..++.+++
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 518 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRY 518 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999977666677
Q ss_pred HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 148 YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 148 ~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.+.+..|.+..++..++.++.+.+++++.+|||||||||+|||||+++| ++++||||++++|.
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~------~illLDep~saLD~ 581 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDA------DLYLLDSPFTHLDV 581 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCC------CEEEEeCCcccCCH
Confidence 7778888888899999999999999999999999999999999999998 78899999999976
No 45
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-33 Score=287.87 Aligned_cols=143 Identities=32% Similarity=0.449 Sum_probs=130.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|. ++||+|++.+++.|++||
T Consensus 471 ~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eN 550 (694)
T TIGR01846 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDN 550 (694)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHH
Confidence 4799999999999999999999999999999999999999999999983 799999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.+ ...++..+.++.+.+...+..+|.+.++.+++.+.+||||||||++|||||+++| ++|||||||+++
T Consensus 551 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~------~ililDEpts~L 624 (694)
T TIGR01846 551 IALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP------RILIFDEATSAL 624 (694)
T ss_pred HhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC------CEEEEECCCcCC
Confidence 999754 4455666777777778888889999999999999999999999999999999998 789999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 625 D~~ 627 (694)
T TIGR01846 625 DYE 627 (694)
T ss_pred CHH
Confidence 863
No 46
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.5e-33 Score=250.52 Aligned_cols=143 Identities=34% Similarity=0.456 Sum_probs=116.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++.|+.+|
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 95 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDN 95 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHH
Confidence 4799999999999999999999999999999999999999999999872 799999998888899999
Q ss_pred HHhCCCC-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++... .............+...+..++.+..+.+++++.+|||||||||+|||||+.+| ++||||||++++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p------~llllDEP~~~L 169 (237)
T cd03252 96 IALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP------RILIFDEATSAL 169 (237)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC------CEEEEeCCcccC
Confidence 9875431 122222222222333444455555566677888999999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|.-
T Consensus 170 D~~ 172 (237)
T cd03252 170 DYE 172 (237)
T ss_pred CHH
Confidence 764
No 47
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.4e-34 Score=262.17 Aligned_cols=189 Identities=32% Similarity=0.585 Sum_probs=137.4
Q ss_pred eEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCcccccccccccc--ccceeeeeeEEeeCCcEEEEECCCCCcH
Q psy850 17 AVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVE--RNIALVDINFFAPKGKLVGICGAVGSGK 94 (280)
Q Consensus 17 ~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~vL~~Isl~i~~GeivaIiGpnGsGK 94 (280)
.|.|+|++..|++......... +. .............++++++. .+.+|+++||+|++||+++|+|||||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~l~i~nls~~~~~vL~~vs~~i~~Ge~~~liG~NGsGK 76 (282)
T cd03291 3 GVIMENVTAFWDEGFGELLEKA---KQ---ENNDRKHSSDDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGK 76 (282)
T ss_pred cchhhhhHHHHHHHHHHHHhcc---cc---cccccccCCCCCeEEEEEEEEecccceeeeeEEEcCCCEEEEECCCCCCH
Confidence 4678999999986322111000 00 00001111122234455442 3569999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccC
Q psy850 95 SALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174 (280)
Q Consensus 95 STLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~ 174 (280)
|||+++|+|+++|++|+|.++|.++|++|++.+++.|+++|+.++......+....+..+.+...+..++.+..+.+.++
T Consensus 77 STLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~ 156 (282)
T cd03291 77 TSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156 (282)
T ss_pred HHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCC
Confidence 99999999999999999999999999999998888899999988643322222233333333444444554555556677
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 175 GINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 175 ~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+.+||||||||++|||||+.+| ++||||||++++|..
T Consensus 157 ~~~LSgGq~qrv~lAraL~~~p------~iLiLDEPt~gLD~~ 193 (282)
T cd03291 157 GITLSGGQRARISLARAVYKDA------DLYLLDSPFGYLDVF 193 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhcCC------CEEEEECCCccCCHH
Confidence 7899999999999999999998 889999999999863
No 48
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.7e-33 Score=246.74 Aligned_cols=145 Identities=32% Similarity=0.437 Sum_probs=121.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++..|+++|
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en 97 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN 97 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHH
Confidence 4799999999999999999999999999999999999999999999872 799999998888899999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+.+.......+....+....+...+..++.+..+...+++.+||||||||++|||||+.+| ++|+||||++++|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p------~llllDEP~~~LD 171 (221)
T cd03244 98 LDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS------KILVLDEATASVD 171 (221)
T ss_pred hCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC------CEEEEeCccccCC
Confidence 9765433333334444444445555556667777777888999999999999999999998 8899999999998
Q ss_pred ceEE
Q psy850 216 SILL 219 (280)
Q Consensus 216 ~ill 219 (280)
..-.
T Consensus 172 ~~~~ 175 (221)
T cd03244 172 PETD 175 (221)
T ss_pred HHHH
Confidence 7543
No 49
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-33 Score=250.33 Aligned_cols=170 Identities=26% Similarity=0.402 Sum_probs=133.3
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCC-CC
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWIT-ND 130 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~ 130 (280)
+...+|++|||++++||+++|+||||+||||||++|+|+.++.+|+|.++|+ ++||||...+| .+
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L 93 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC
Confidence 3467999999999999999999999999999999999999999999999984 79999998776 67
Q ss_pred cHHHHHHhCCCCChh-hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 131 TLRHNILFGEPFEPQ-RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 131 Tv~enI~~g~~~~~~-~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
||+||+.+|...... .... ...+.....+|. +....++++.+|||||||.++|||||+.+| ++|+|||
T Consensus 94 TVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~P------klLLLDE 162 (237)
T COG0410 94 TVEENLLLGAYARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSRP------KLLLLDE 162 (237)
T ss_pred cHHHHHhhhhhccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcCC------CEEEecC
Confidence 999999987533221 1111 012233444552 444567788899999999999999999998 9999999
Q ss_pred ccCCCCc-------------------eEEEeehhhhhccCcccceeEEecCCeeeee
Q psy850 210 PCVSLQS-------------------ILLMEEVNVYVSKPIDKSSAVSIAGGSFLWD 247 (280)
Q Consensus 210 p~~~l~~-------------------illlDE~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (280)
|+.++.+ .++|=|.|+....++++ -+.-+..|...|.
T Consensus 163 Ps~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaD-r~yvle~Griv~~ 218 (237)
T COG0410 163 PSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIAD-RGYVLENGRIVLS 218 (237)
T ss_pred CccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhC-EEEEEeCCEEEEe
Confidence 9999843 45566888888888877 4444556665553
No 50
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=9.9e-34 Score=274.24 Aligned_cols=152 Identities=36% Similarity=0.559 Sum_probs=134.5
Q ss_pred ccccccc------cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEE
Q psy850 59 HLKAEDV------ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCA 119 (280)
Q Consensus 59 ~l~~~~~------~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig 119 (280)
.+.++++ .+++++++|||++.+||.++||||||||||||.|+|.|..+|++|.|++|| +||
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG 413 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG 413 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC
Confidence 4666654 356899999999999999999999999999999999999999999999998 489
Q ss_pred EEecCCCCCCCcHHHHHH-hCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCch
Q psy850 120 YVSQEAWITNDTLRHNIL-FGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFE 198 (280)
Q Consensus 120 ~v~Q~~~l~~~Tv~enI~-~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i 198 (280)
|+||+-.+|++||.|||+ |+...+.++..+..+.....+.+..+|+|++|.+++.+..||||||||++||||||.+|
T Consensus 414 YLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P-- 491 (580)
T COG4618 414 YLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP-- 491 (580)
T ss_pred cCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC--
Confidence 999999999999999996 55556666677776666777778899999999999999999999999999999999998
Q ss_pred hhhhhhhhhccccCCCCc
Q psy850 199 QQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 199 ~~~~~ll~ldep~~~l~~ 216 (280)
.++|||||-+++|.
T Consensus 492 ----~lvVLDEPNsNLD~ 505 (580)
T COG4618 492 ----FLVVLDEPNSNLDS 505 (580)
T ss_pred ----cEEEecCCCCCcch
Confidence 77788888887765
No 51
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-33 Score=267.17 Aligned_cols=136 Identities=25% Similarity=0.355 Sum_probs=110.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+++||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++||||++.++ +.||++||
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENM 97 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999983 89999998776 67999999
Q ss_pred HhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.|+.... .......+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~~P------~llLLDEP~s~ 164 (356)
T PRK11650 98 AYGLKIRGMPKAEIEERVA-----EAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVREP------AVFLFDEPLSN 164 (356)
T ss_pred HhHHhhcCCCHHHHHHHHH-----HHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCccc
Confidence 9874321 111111111 122222 2334567788999999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|..
T Consensus 165 LD~~ 168 (356)
T PRK11650 165 LDAK 168 (356)
T ss_pred CCHH
Confidence 9753
No 52
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-33 Score=253.74 Aligned_cols=153 Identities=24% Similarity=0.340 Sum_probs=120.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCC--C-CCCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAW--I-TNDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~--l-~~~T 131 (280)
.+|++|||+|.+||+++|+|+||||||||.++|+|+.+|+.|+|.++|. +.+|||+|. + +..|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 5899999999999999999999999999999999999999999999983 679999984 2 3569
Q ss_pred HHHHHHhCCCCCh-hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 132 LRHNILFGEPFEP-QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 132 v~enI~~g~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
|++.|.-+..... ....+.+. ..+... ......+.++|.+|||||||||+|||||..+| ++||||||
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~-----~~L~~V-gL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P------klLIlDEp 168 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIA-----ELLDQV-GLPPSFLDRRPHELSGGQRQRIAIARALIPEP------KLLILDEP 168 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHH-----HHHHHc-CCCHHHHhcCchhcChhHHHHHHHHHHhccCC------CEEEecCc
Confidence 9888865432211 01111111 111111 12345567899999999999999999999998 99999999
Q ss_pred cCCCCceEEEeehhhhhccCccc
Q psy850 211 CVSLQSILLMEEVNVYVSKPIDK 233 (280)
Q Consensus 211 ~~~l~~illlDE~~~~~~~~~~~ 233 (280)
+++||..+....+|++.+.+=+.
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhc
Confidence 99999999888888887765443
No 53
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.8e-33 Score=278.94 Aligned_cols=142 Identities=33% Similarity=0.468 Sum_probs=126.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++.|++||
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 428 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIREN 428 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHH
Confidence 3699999999999999999999999999999999999999999999873 799999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.+ ...++....++.+.+...+..+|.+..+.+++++.+||||||||++|||||+++| ++|||||||+++
T Consensus 429 i~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p------~ililDEpts~L 502 (585)
T TIGR01192 429 IRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA------PILVLDEATSAL 502 (585)
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC------CEEEEECCccCC
Confidence 999854 3344555555555566667778889999999999999999999999999999998 889999999999
Q ss_pred Cc
Q psy850 215 QS 216 (280)
Q Consensus 215 ~~ 216 (280)
|.
T Consensus 503 D~ 504 (585)
T TIGR01192 503 DV 504 (585)
T ss_pred CH
Confidence 86
No 54
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.4e-33 Score=245.23 Aligned_cols=143 Identities=48% Similarity=0.797 Sum_probs=117.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCCCCCCCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEAWITNDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~~l~~~T 131 (280)
.+++++||+|++||+++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.+++.|
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 94 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNAT 94 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccccc
Confidence 479999999999999999999999999999999999999999999865 278999999888889
Q ss_pred HHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 132 LRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 132 v~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
+++|+.+.......+..+....+.+...+...+.++.+.++.++.+|||||||||+|||||+.+| ++||||||+
T Consensus 95 ~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p------~illlDEPt 168 (218)
T cd03290 95 VEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT------NIVFLDDPF 168 (218)
T ss_pred HHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC------CEEEEeCCc
Confidence 99999886543332333333333344445555666666677788899999999999999999998 789999999
Q ss_pred CCCCce
Q psy850 212 VSLQSI 217 (280)
Q Consensus 212 ~~l~~i 217 (280)
.++|..
T Consensus 169 ~~LD~~ 174 (218)
T cd03290 169 SALDIH 174 (218)
T ss_pred cccCHH
Confidence 999875
No 55
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-33 Score=245.80 Aligned_cols=143 Identities=29% Similarity=0.444 Sum_probs=117.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
.+++++||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.++..|+++|
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 96 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN 96 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHH
Confidence 369999999999999999999999999999999999999999999987 2799999998887799999
Q ss_pred HHhCCCCC-hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPFE-PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.+..... ..+....+....+...+..++.+..+.+..++.+|||||||||+|||||+.+| ++|+||||++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p------~llllDEP~~~L 170 (229)
T cd03254 97 IRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP------KILILDEATSNI 170 (229)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC------CEEEEeCccccC
Confidence 98864322 22233333333444455556556666777888999999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 171 D~~ 173 (229)
T cd03254 171 DTE 173 (229)
T ss_pred CHH
Confidence 854
No 56
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-33 Score=305.56 Aligned_cols=142 Identities=28% Similarity=0.381 Sum_probs=133.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++||.+|||||+|||||||+++|+|+++|++|+|.++|. ++||||+|.+|++|+++|
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence 4799999999999999999999999999999999999999999999983 799999999999999999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
|.++.....++..++++.+.+...+..+|.+.++.+++++.+||||||||++|||||+++| ++|||||||+++|
T Consensus 1330 L~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~------~ILILDEATSaLD 1403 (1495)
T PLN03232 1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS------KILVLDEATASVD 1403 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC------CEEEEECCcccCC
Confidence 9987766677788888888888888899999999999999999999999999999999998 7899999999997
Q ss_pred c
Q psy850 216 S 216 (280)
Q Consensus 216 ~ 216 (280)
.
T Consensus 1404 ~ 1404 (1495)
T PLN03232 1404 V 1404 (1495)
T ss_pred H
Confidence 6
No 57
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.1e-33 Score=266.27 Aligned_cols=136 Identities=22% Similarity=0.311 Sum_probs=109.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++||||++.+| +.||++||
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi 107 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENV 107 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999984 79999998766 67999999
Q ss_pred HhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.|+.... .....+.+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 108 ~~~l~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P------~llLLDEP~s~ 174 (375)
T PRK09452 108 AFGLRMQKTPAAEITPRV-----MEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVVNKP------KVLLLDESLSA 174 (375)
T ss_pred HHHHhhcCCCHHHHHHHH-----HHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCCCc
Confidence 9874321 11111111 1112222 2334567788999999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|.-
T Consensus 175 LD~~ 178 (375)
T PRK09452 175 LDYK 178 (375)
T ss_pred CCHH
Confidence 9653
No 58
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.9e-33 Score=305.92 Aligned_cols=142 Identities=27% Similarity=0.354 Sum_probs=133.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+||||+|++||.+||||++|||||||+++|+|+++|++|+|.++|. +++|||+|.+|++|+++|
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence 4899999999999999999999999999999999999999999999983 799999999999999999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
|.++.....++..++++.+.+...+..+|.++++.+++++.+||||||||++|||||+++| ++|||||||+++|
T Consensus 1333 Ld~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p------~ILILDEATSaLD 1406 (1622)
T PLN03130 1333 LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS------KILVLDEATAAVD 1406 (1622)
T ss_pred hCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC------CEEEEECCCCCCC
Confidence 9988766677788888888888888999999999999999999999999999999999998 7899999999987
Q ss_pred c
Q psy850 216 S 216 (280)
Q Consensus 216 ~ 216 (280)
.
T Consensus 1407 ~ 1407 (1622)
T PLN03130 1407 V 1407 (1622)
T ss_pred H
Confidence 5
No 59
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-33 Score=262.97 Aligned_cols=137 Identities=24% Similarity=0.323 Sum_probs=110.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++||||++.+| ++||+||+
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi 99 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENV 99 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999883 79999998776 67999999
Q ss_pred HhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.|+... ......+.+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 100 ~~~l~~~~~~~~~~~~~v~-----~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P------~lLLLDEP~s~ 166 (351)
T PRK11432 100 GYGLKMLGVPKEERKQRVK-----EALELV--DLAGFEDRYVDQISGGQQQRVALARALILKP------KVLLFDEPLSN 166 (351)
T ss_pred HHHHhHcCCCHHHHHHHHH-----HHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEcCCccc
Confidence 987432 1111111211 112221 2233456778999999999999999999998 88999999999
Q ss_pred CCceE
Q psy850 214 LQSIL 218 (280)
Q Consensus 214 l~~il 218 (280)
+|..+
T Consensus 167 LD~~~ 171 (351)
T PRK11432 167 LDANL 171 (351)
T ss_pred CCHHH
Confidence 97643
No 60
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.3e-32 Score=243.17 Aligned_cols=154 Identities=34% Similarity=0.455 Sum_probs=122.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++|++|++.+++.|+.+|
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 97 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDN 97 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHH
Confidence 4799999999999999999999999999999999999999999999872 799999998777899999
Q ss_pred HHhCCCCC-hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPFE-PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.... ..+....+....+...+...+.+..+.+.+.+.+||||||||++|||||+.+| ++||||||++++
T Consensus 98 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p------~llllDEPt~~L 171 (220)
T cd03245 98 ITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP------PILLLDEPTSAM 171 (220)
T ss_pred hhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC------CEEEEeCccccC
Confidence 98764322 22223333333444444555555566666677899999999999999999998 889999999999
Q ss_pred CceEEEeehhhhhc
Q psy850 215 QSILLMEEVNVYVS 228 (280)
Q Consensus 215 ~~illlDE~~~~~~ 228 (280)
|..-...-.+++.+
T Consensus 172 D~~~~~~l~~~l~~ 185 (220)
T cd03245 172 DMNSEERLKERLRQ 185 (220)
T ss_pred CHHHHHHHHHHHHH
Confidence 88655444444443
No 61
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.6e-33 Score=263.55 Aligned_cols=136 Identities=33% Similarity=0.383 Sum_probs=110.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+++||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|+ ++||||++.+| ++||++|+
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence 4799999999999999999999999999999999999999999999883 79999998776 68999999
Q ss_pred HhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.|+... ........+ ...++.+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~-----~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P------~llLLDEP~s~ 164 (353)
T TIGR03265 98 AYGLKNRGMGRAEVAERV-----AELLDLV--GLPGSERKYPGQLSGGQQQRVALARALATSP------GLLLLDEPLSA 164 (353)
T ss_pred HHHHHhcCCCHHHHHHHH-----HHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCccc
Confidence 987431 111111111 1222222 2334566788999999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|.-
T Consensus 165 LD~~ 168 (353)
T TIGR03265 165 LDAR 168 (353)
T ss_pred CCHH
Confidence 9743
No 62
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-32 Score=244.78 Aligned_cols=143 Identities=36% Similarity=0.517 Sum_probs=117.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++.|+++|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 4799999999999999999999999999999999999999999999872 799999998888899999
Q ss_pred HHhCCCC-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++... .............+...+..++.+..+.++.++.+|||||||||+|||||+.+| ++|+||||++++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p------~lllLDEP~~~L 169 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP------PILILDEATSAL 169 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC------CEEEEeCccccC
Confidence 9886432 122222222333344445555545566677788899999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 170 D~~ 172 (234)
T cd03251 170 DTE 172 (234)
T ss_pred CHH
Confidence 764
No 63
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8.9e-33 Score=243.75 Aligned_cols=146 Identities=28% Similarity=0.402 Sum_probs=111.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l~-~~T 131 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT 96 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence 4799999999999999999999999999999999999999999999872 68999998766 569
Q ss_pred HHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
+.+|+.++... ......+.+. ..+..+ +......+++.+|||||||||+|||||+.+| ++|+||
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~p------~llllD 163 (216)
T TIGR00960 97 VYDNVAFPLRIIGVPPRDANERVS-----AALEKV--GLEGKAHALPMQLSGGEQQRVAIARAIVHKP------PLLLAD 163 (216)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEe
Confidence 99999875221 1111111111 112221 2233455677899999999999999999998 889999
Q ss_pred cccCCCCceEEEeehhhhh
Q psy850 209 CPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 209 ep~~~l~~illlDE~~~~~ 227 (280)
||++++|......-.+++.
T Consensus 164 EPt~~LD~~~~~~l~~~l~ 182 (216)
T TIGR00960 164 EPTGNLDPELSRDIMRLFE 182 (216)
T ss_pred CCCCcCCHHHHHHHHHHHH
Confidence 9999998854443344443
No 64
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-32 Score=244.26 Aligned_cols=143 Identities=35% Similarity=0.538 Sum_probs=118.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++|++|++.+++.|+++|
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 94 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYN 94 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHH
Confidence 4799999999999999999999999999999999999999999999872 799999998888899999
Q ss_pred HHhCCCCC-hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPFE-PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.... ..........+.+...+..++.+..+.+.+++.+|||||||||+|||||+.+| ++||||||++++
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p------~llllDEP~~~L 168 (236)
T cd03253 95 IRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP------PILLLDEATSAL 168 (236)
T ss_pred HhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccC
Confidence 98864321 12222223333344445556666677777888899999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|.-
T Consensus 169 D~~ 171 (236)
T cd03253 169 DTH 171 (236)
T ss_pred CHH
Confidence 864
No 65
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.1e-32 Score=261.22 Aligned_cols=136 Identities=29% Similarity=0.376 Sum_probs=109.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l~-~~T 131 (280)
.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ++|+||++.++ ..|
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 4799999999999999999999999999999999999999999999873 79999998776 579
Q ss_pred HHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
|++|+.++... ......+.+. ..++.+ +.....++++.+|||||||||+|||||+.+| ++|++|
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~-----e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARAL~~~P------~iLLlD 165 (343)
T TIGR02314 99 VFGNVALPLELDNTPKDEIKRKVT-----ELLALV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP------KVLLCD 165 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHhCC------CEEEEe
Confidence 99999875321 1111111111 112222 3334567788999999999999999999998 889999
Q ss_pred cccCCCCce
Q psy850 209 CPCVSLQSI 217 (280)
Q Consensus 209 ep~~~l~~i 217 (280)
|||+++|+-
T Consensus 166 EPts~LD~~ 174 (343)
T TIGR02314 166 EATSALDPA 174 (343)
T ss_pred CCcccCCHH
Confidence 999999763
No 66
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1e-32 Score=243.39 Aligned_cols=150 Identities=27% Similarity=0.273 Sum_probs=113.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCCCCCC-C
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEAWITN-D 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~~l~~-~ 130 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL 97 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence 479999999999999999999999999999999999999999999875 2799999987664 5
Q ss_pred cHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 131 TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 131 Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
|+++|+.++.......... . .......+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||
T Consensus 98 tv~e~l~~~~~~~~~~~~~-~-~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p------~lllLDEP 167 (218)
T cd03255 98 TALENVELPLLLAGVPKKE-R-RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDP------KIILADEP 167 (218)
T ss_pred cHHHHHHHHHhhcCCCHHH-H-HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHHHHccCC------CEEEEcCC
Confidence 9999998754221100000 0 00111122222 2334456778899999999999999999998 88999999
Q ss_pred cCCCCceEEEeehhhhhc
Q psy850 211 CVSLQSILLMEEVNVYVS 228 (280)
Q Consensus 211 ~~~l~~illlDE~~~~~~ 228 (280)
++++|..-...-.+++..
T Consensus 168 ~~~LD~~~~~~l~~~l~~ 185 (218)
T cd03255 168 TGNLDSETGKEVMELLRE 185 (218)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999988654444444443
No 67
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.7e-32 Score=245.26 Aligned_cols=143 Identities=34% Similarity=0.487 Sum_probs=116.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++..|+++|
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHH
Confidence 479999999999999999999999999999999999999999999987 2799999988777899999
Q ss_pred HHhCCCCC-hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPFE-PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.... ..+.........+...+..++.+..+.+..++.+|||||||||+|||||+.+| ++||||||++++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p------~llllDEP~~gL 170 (238)
T cd03249 97 IRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP------KILLLDEATSAL 170 (238)
T ss_pred hhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC------CEEEEeCccccC
Confidence 98864322 12222222222333344455555566667788899999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 171 D~~ 173 (238)
T cd03249 171 DAE 173 (238)
T ss_pred CHH
Confidence 854
No 68
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.3e-32 Score=241.66 Aligned_cols=146 Identities=31% Similarity=0.435 Sum_probs=116.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++.|+++|
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~n 107 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN 107 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHH
Confidence 3799999999999999999999999999999999999999999999872 799999998777899999
Q ss_pred HHhCCCCCh-hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPFEP-QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++..... ....+..........+..++.+..+.+.+++.+|||||||||+|||||+.+| ++||||||+.++
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p------~llllDEPt~~L 181 (226)
T cd03248 108 IAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP------QVLILDEATSAL 181 (226)
T ss_pred hccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccC
Confidence 987643211 1111121222233344455445556677888999999999999999999998 889999999999
Q ss_pred CceEEE
Q psy850 215 QSILLM 220 (280)
Q Consensus 215 ~~illl 220 (280)
|....-
T Consensus 182 D~~~~~ 187 (226)
T cd03248 182 DAESEQ 187 (226)
T ss_pred CHHHHH
Confidence 875433
No 69
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-32 Score=242.86 Aligned_cols=145 Identities=29% Similarity=0.365 Sum_probs=110.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|+++|+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 93 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENI 93 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHH
Confidence 4799999999999999999999999999999999999999999999872 79999998665 57999999
Q ss_pred HhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.++... ......+.+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~p------~~lllDEPt~~ 160 (213)
T cd03259 94 AFGLKLRGVPKAEIRARV-----RELLELV--GLEGLLNRYPHELSGGQQQRVALARALAREP------SLLLLDEPLSA 160 (213)
T ss_pred HhHHHHcCCCHHHHHHHH-----HHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCccc
Confidence 875321 111111111 1112222 2334456677899999999999999999998 78999999999
Q ss_pred CCceEEEeehhhh
Q psy850 214 LQSILLMEEVNVY 226 (280)
Q Consensus 214 l~~illlDE~~~~ 226 (280)
+|..-.-.-.+++
T Consensus 161 LD~~~~~~l~~~l 173 (213)
T cd03259 161 LDAKLREELREEL 173 (213)
T ss_pred CCHHHHHHHHHHH
Confidence 9875433333333
No 70
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-32 Score=245.36 Aligned_cols=137 Identities=28% Similarity=0.373 Sum_probs=107.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCCCC-Cc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWITN-DT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l~~-~T 131 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++ .|
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT 93 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence 4799999999999999999999999999999999999999999998762 689999987664 69
Q ss_pred HHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 132 LRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 132 v~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
+++|+.++... ........+. ..+..+ +......+++.+|||||||||+|||||+.+| ++|||
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p------~llll 160 (235)
T cd03261 94 VFENVAFPLREHTRLSEEEIREIVL-----EKLEAV--GLRGAEDLYPAELSGGMKKRVALARALALDP------ELLLY 160 (235)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHH-----HHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEe
Confidence 99999875321 1111111111 112222 2223346677899999999999999999998 88999
Q ss_pred ccccCCCCceE
Q psy850 208 LCPCVSLQSIL 218 (280)
Q Consensus 208 dep~~~l~~il 218 (280)
|||++++|..-
T Consensus 161 DEPt~~LD~~~ 171 (235)
T cd03261 161 DEPTAGLDPIA 171 (235)
T ss_pred cCCcccCCHHH
Confidence 99999998643
No 71
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.5e-32 Score=300.60 Aligned_cols=143 Identities=24% Similarity=0.351 Sum_probs=132.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+||||+|++||.+||||++|||||||+++|+|+++|++|+|.++|. ++||||+|.+|++|+++|
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreN 1403 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQN 1403 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHH
Confidence 4899999999999999999999999999999999999999999999983 799999999999999999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcC-CchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN-SFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~-p~i~~~~~ll~ldep~~~l 214 (280)
|.....+..++..++++.+.+...+..+|.++++.+++++.+||||||||++|||||+++ | ++|||||||+++
T Consensus 1404 Idp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~------~ILlLDEATSaL 1477 (1560)
T PTZ00243 1404 VDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS------GFILMDEATANI 1477 (1560)
T ss_pred hCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC------CEEEEeCCCccC
Confidence 987656667788888888888888889999999999999999999999999999999996 6 789999999998
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|.-
T Consensus 1478 D~~ 1480 (1560)
T PTZ00243 1478 DPA 1480 (1560)
T ss_pred CHH
Confidence 763
No 72
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.7e-32 Score=242.80 Aligned_cols=146 Identities=29% Similarity=0.356 Sum_probs=112.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------eEEEEecCCCCCC-CcHHHHHHhC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------TCAYVSQEAWITN-DTLRHNILFG 139 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--------~ig~v~Q~~~l~~-~Tv~enI~~g 139 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .|+++|+.++
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALG 97 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHH
Confidence 589999999999999999999999999999999999999999999987 3799999987764 7999999865
Q ss_pred CCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 140 EPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 140 ~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
... ........+ ...+..+ +......+++.+||||||||++|||||+.+| ++||||||++++|.
T Consensus 98 ~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~p------~lllLDEPt~~LD~ 164 (220)
T cd03293 98 LELQGVPKAEARERA-----EELLELV--GLSGFENAYPHQLSGGMRQRVALARALAVDP------DVLLLDEPFSALDA 164 (220)
T ss_pred HHHcCCCHHHHHHHH-----HHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHcCC------CEEEECCCCCCCCH
Confidence 321 111111111 1122222 2233456677899999999999999999998 88999999999988
Q ss_pred eEEEeehhhhh
Q psy850 217 ILLMEEVNVYV 227 (280)
Q Consensus 217 illlDE~~~~~ 227 (280)
.-.-.-.+++.
T Consensus 165 ~~~~~~~~~l~ 175 (220)
T cd03293 165 LTREQLQEELL 175 (220)
T ss_pred HHHHHHHHHHH
Confidence 65444444443
No 73
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.98 E-value=2.2e-32 Score=260.83 Aligned_cols=137 Identities=24% Similarity=0.365 Sum_probs=110.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--ceEEECCe-----------EEEEecCCCCC-CCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTA--GKLSREGT-----------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~--G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~e 134 (280)
.+|+++||+|++||+++|+|||||||||||++|+|+++|++ |+|.++|. ++||||++.++ +.||++
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~e 98 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVED 98 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHH
Confidence 47999999999999999999999999999999999999999 99999873 79999998766 679999
Q ss_pred HHHhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 135 NILFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 135 nI~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
|+.|+.... .....+.+ ...++.+ +.....++++.+|||||||||+|||||+.+| ++|+||||+
T Consensus 99 nl~~~l~~~~~~~~~~~~~v-----~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P------~llLLDEP~ 165 (362)
T TIGR03258 99 NVAFGLRAQKMPKADIAERV-----ADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARAIAIEP------DVLLLDEPL 165 (362)
T ss_pred HHHHHHHHcCCCHHHHHHHH-----HHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEcCcc
Confidence 999864211 11111111 1122222 2334567788999999999999999999998 889999999
Q ss_pred CCCCceE
Q psy850 212 VSLQSIL 218 (280)
Q Consensus 212 ~~l~~il 218 (280)
+++|...
T Consensus 166 s~LD~~~ 172 (362)
T TIGR03258 166 SALDANI 172 (362)
T ss_pred ccCCHHH
Confidence 9997753
No 74
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.98 E-value=2.2e-32 Score=299.14 Aligned_cols=143 Identities=30% Similarity=0.371 Sum_probs=131.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+||||+|++||.+||||++|||||||+++|+|+++|++|+|.++|. ++||||+|.+|++|+++|
T Consensus 1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~N 1379 (1522)
T TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN 1379 (1522)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHH
Confidence 4799999999999999999999999999999999999999999999983 799999999999999999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+.....+..++..++++.+.+...+..+|.++++.+++++.+||||||||++|||||+++| ++|||||||+++|
T Consensus 1380 Ldp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~------~ILiLDEaTSalD 1453 (1522)
T TIGR00957 1380 LDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT------KILVLDEATAAVD 1453 (1522)
T ss_pred cCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCC------CEEEEECCcccCC
Confidence 9843356667788888888888888899999999999999999999999999999999998 7899999999998
Q ss_pred ce
Q psy850 216 SI 217 (280)
Q Consensus 216 ~i 217 (280)
.-
T Consensus 1454 ~~ 1455 (1522)
T TIGR00957 1454 LE 1455 (1522)
T ss_pred HH
Confidence 73
No 75
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.98 E-value=2.7e-32 Score=239.07 Aligned_cols=147 Identities=24% Similarity=0.327 Sum_probs=112.0
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------eEEEEecCC--CCCCCcHHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------TCAYVSQEA--WITNDTLRHN 135 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------~ig~v~Q~~--~l~~~Tv~en 135 (280)
+.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++| .++|++|++ .++..|++||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence 3589999999999999999999999999999999999999999999987 379999997 3557799999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+.++....... ...+ ...++.+ +......+++.+||||||||++|||||+.+| ++|+||||++++|
T Consensus 93 l~~~~~~~~~~-~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~llllDEPt~~LD 158 (205)
T cd03226 93 LLLGLKELDAG-NEQA-----ETVLKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSGK------DLLIFDEPTSGLD 158 (205)
T ss_pred HhhhhhhcCcc-HHHH-----HHHHHHc--CCchhcCCCchhCCHHHHHHHHHHHHHHhCC------CEEEEeCCCccCC
Confidence 98753221110 0111 1111111 2223345677899999999999999999998 8899999999998
Q ss_pred ceEEEeehhhhhc
Q psy850 216 SILLMEEVNVYVS 228 (280)
Q Consensus 216 ~illlDE~~~~~~ 228 (280)
..-.-.-.+++..
T Consensus 159 ~~~~~~l~~~l~~ 171 (205)
T cd03226 159 YKNMERVGELIRE 171 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 8554444444433
No 76
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.98 E-value=7.2e-32 Score=244.87 Aligned_cols=143 Identities=29% Similarity=0.417 Sum_probs=118.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|++|++.+++.|+++|
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~n 114 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN 114 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHh
Confidence 4799999999999999999999999999999999999999999999872 799999998888899999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+.+.......+....+....+...+..++.+..+.+++++.+||||||||++|||||+.+| ++|+||||++++|
T Consensus 115 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p------~llllDEPt~gLD 188 (257)
T cd03288 115 LDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS------SILIMDEATASID 188 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC------CEEEEeCCccCCC
Confidence 8654322222233333333444555566666777777888899999999999999999998 8899999999998
Q ss_pred ce
Q psy850 216 SI 217 (280)
Q Consensus 216 ~i 217 (280)
..
T Consensus 189 ~~ 190 (257)
T cd03288 189 MA 190 (257)
T ss_pred HH
Confidence 74
No 77
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=5.7e-32 Score=259.25 Aligned_cols=137 Identities=31% Similarity=0.379 Sum_probs=110.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+++||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|. ++|+||++.+| +.||.||+
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi 112 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNI 112 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999984 79999998776 67999999
Q ss_pred HhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.|+.... .....+.+ ...++.+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 113 ~~~l~~~~~~~~~~~~~v-----~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P------~lLLLDEP~s~ 179 (377)
T PRK11607 113 AFGLKQDKLPKAEIASRV-----NEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLAKRP------KLLLLDEPMGA 179 (377)
T ss_pred HHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCccc
Confidence 9874311 11111111 1122222 2334456788899999999999999999998 88999999999
Q ss_pred CCceE
Q psy850 214 LQSIL 218 (280)
Q Consensus 214 l~~il 218 (280)
+|...
T Consensus 180 LD~~~ 184 (377)
T PRK11607 180 LDKKL 184 (377)
T ss_pred CCHHH
Confidence 97643
No 78
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.98 E-value=1.5e-32 Score=262.01 Aligned_cols=139 Identities=25% Similarity=0.304 Sum_probs=112.5
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCCCCCC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEAWITN 129 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~~l~~ 129 (280)
.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| .++||||++++++
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 45689999999999999999999999999999999999999999999987 2799999998874
Q ss_pred -CcHHHHHHhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 130 -DTLRHNILFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 130 -~Tv~enI~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
.||++|+.++.... .....+.+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++|
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~-----~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p------~iL 151 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKAL-----ELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEP------DIL 151 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCC------CEE
Confidence 79999998864321 111111111 112211 3344567889999999999999999999998 889
Q ss_pred hhccccCCCCceE
Q psy850 206 VLLCPCVSLQSIL 218 (280)
Q Consensus 206 ~ldep~~~l~~il 218 (280)
+||||++++|+..
T Consensus 152 LlDEP~saLD~~~ 164 (363)
T TIGR01186 152 LMDEAFSALDPLI 164 (363)
T ss_pred EEeCCcccCCHHH
Confidence 9999999998754
No 79
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6.1e-32 Score=254.72 Aligned_cols=137 Identities=26% Similarity=0.342 Sum_probs=109.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .++|+||+++++
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 47999999999999999999999999999999999986 5799998765 379999999999
Q ss_pred CCcHHHHHHhCCCCC---hhhH-----HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhh
Q psy850 129 NDTLRHNILFGEPFE---PQRY-----YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQ 200 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~---~~~~-----~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~ 200 (280)
+.|+++|+.|+..+. .... ...++.+.+ ..+..+.+++++.+|||||||||+|||||+.+|
T Consensus 176 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p---- 244 (329)
T PRK14257 176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGGQQQRLCIARAIALEP---- 244 (329)
T ss_pred CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHHHHHHHHHHHHHHhCC----
Confidence 999999999764221 1111 111122221 112235677889999999999999999999998
Q ss_pred hhhhhhhccccCCCCceE
Q psy850 201 TFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~il 218 (280)
++|+||||++++|...
T Consensus 245 --~IlLLDEPts~LD~~~ 260 (329)
T PRK14257 245 --EVLLMDEPTSALDPIA 260 (329)
T ss_pred --CEEEEeCCcccCCHHH
Confidence 7899999999998743
No 80
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.98 E-value=6.7e-32 Score=248.68 Aligned_cols=144 Identities=31% Similarity=0.446 Sum_probs=124.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++| .++|+||++.+++.|+++|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 47999999999999999999999999999999999998 799999998 3799999999998899999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+........++..+.+..+.+...+..++.++.+.+.+.+..||||||||++|||||+.+| ++|+||||++++|
T Consensus 97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p------~illlDEpts~LD 170 (275)
T cd03289 97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA------KILLLDEPSAHLD 170 (275)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC------CEEEEECccccCC
Confidence 9643233344555666666666667778888888888888999999999999999999998 8899999999998
Q ss_pred ceEE
Q psy850 216 SILL 219 (280)
Q Consensus 216 ~ill 219 (280)
..-.
T Consensus 171 ~~~~ 174 (275)
T cd03289 171 PITY 174 (275)
T ss_pred HHHH
Confidence 7533
No 81
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.98 E-value=4.9e-32 Score=257.63 Aligned_cols=136 Identities=32% Similarity=0.397 Sum_probs=109.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++||||++.++ +.|+++|+
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni 95 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI 95 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHH
Confidence 4799999999999999999999999999999999999999999999873 79999998776 57999999
Q ss_pred HhCCCC-------ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 137 LFGEPF-------EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 137 ~~g~~~-------~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
.++... ......+.+ ...++.+ +.....++++.+|||||||||+|||||+.+| ++|+|||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArAL~~~P------~llLLDE 162 (353)
T PRK10851 96 AFGLTVLPRRERPNAAAIKAKV-----TQLLEMV--QLAHLADRYPAQLSGGQKQRVALARALAVEP------QILLLDE 162 (353)
T ss_pred HhhhhhcccccCCCHHHHHHHH-----HHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeC
Confidence 987431 111111111 1122222 2334456788999999999999999999998 8899999
Q ss_pred ccCCCCce
Q psy850 210 PCVSLQSI 217 (280)
Q Consensus 210 p~~~l~~i 217 (280)
|++++|.-
T Consensus 163 P~s~LD~~ 170 (353)
T PRK10851 163 PFGALDAQ 170 (353)
T ss_pred CCccCCHH
Confidence 99999753
No 82
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.98 E-value=2.9e-32 Score=240.01 Aligned_cols=148 Identities=29% Similarity=0.368 Sum_probs=113.0
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------EEEEecCCCC---CCCcHHHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------CAYVSQEAWI---TNDTLRHNI 136 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------ig~v~Q~~~l---~~~Tv~enI 136 (280)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+ +..|++||+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l 91 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHH
Confidence 35899999999999999999999999999999999999999999999883 8999999754 457999999
Q ss_pred HhCCCCC-------hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 137 LFGEPFE-------PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 137 ~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
.++.... .....+.+ ...+..+ +......+++.+|||||||||+|||||+.+| ++|||||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p------~llllDE 158 (213)
T cd03235 92 LMGLYGHKGLFRRLSKADKAKV-----DEALERV--GLSELADRQIGELSGGQQQRVLLARALVQDP------DLLLLDE 158 (213)
T ss_pred HhccccccccccCCCHHHHHHH-----HHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHHHHHcCC------CEEEEeC
Confidence 8754211 01111111 1122222 2233455678899999999999999999998 8899999
Q ss_pred ccCCCCceEEEeehhhhhc
Q psy850 210 PCVSLQSILLMEEVNVYVS 228 (280)
Q Consensus 210 p~~~l~~illlDE~~~~~~ 228 (280)
||+++|..-...-.+.+..
T Consensus 159 Pt~~LD~~~~~~l~~~l~~ 177 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRE 177 (213)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999988654444444443
No 83
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=4.7e-32 Score=243.02 Aligned_cols=140 Identities=31% Similarity=0.391 Sum_probs=108.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------eEEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------TCAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------~ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|+++|+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 95 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV 95 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHH
Confidence 479999999999999999999999999999999999999999999987 279999998776 57999999
Q ss_pred HhCCCCChh----hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 137 LFGEPFEPQ----RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 137 ~~g~~~~~~----~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
.++...... ....... .....+..+ +......+++.+|||||||||+|||||+.+| ++|+||||++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p------~llllDEP~~ 165 (239)
T cd03296 96 AFGLRVKPRSERPPEAEIRA--KVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARALAVEP------KVLLLDEPFG 165 (239)
T ss_pred hhhhhhccccccCCHHHHHH--HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCcc
Confidence 875321100 0000000 011112222 2233456677899999999999999999998 8899999999
Q ss_pred CCCceE
Q psy850 213 SLQSIL 218 (280)
Q Consensus 213 ~l~~il 218 (280)
++|..-
T Consensus 166 ~LD~~~ 171 (239)
T cd03296 166 ALDAKV 171 (239)
T ss_pred cCCHHH
Confidence 998743
No 84
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.7e-32 Score=267.20 Aligned_cols=162 Identities=30% Similarity=0.438 Sum_probs=146.2
Q ss_pred eEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHH
Q psy850 17 AVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSA 96 (280)
Q Consensus 17 ~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKST 96 (280)
.++++|++|.|+... .++|+|+||++++||.+||+|++||||||
T Consensus 336 ~l~~~~vsF~y~~~~------------------------------------~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 336 ALELRNVSFTYPGQQ------------------------------------TKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred eeeeccceeecCCCc------------------------------------cchhhccceeecCCCeEEEECCCCCCHHH
Confidence 789999999887642 35899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHHHHhCCCC-ChhhHHHHHHHhhhhhhHhh
Q psy850 97 LLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHNILFGEPF-EPQRYYKTLYNCALNTDIHI 162 (280)
Q Consensus 97 LLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~enI~~g~~~-~~~~~~~~~~~~~l~~~l~~ 162 (280)
|+..|+|-++|++|+|.++| .+++++|.+.+|..|+++|+.++.+. ..+...+.++...++..+..
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 99999999999999999998 26889999999999999999998754 45678888888899999999
Q ss_pred CCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEEE
Q psy850 163 LPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220 (280)
Q Consensus 163 l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~illl 220 (280)
.|+++.+.+++.+..||||||||++|||+|+++. .+++|||||.++|++-=-
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da------pl~lLDEPTegLD~~TE~ 511 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDA------PLWLLDEPTEGLDPITER 511 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC------CeEEecCCcccCChhhHH
Confidence 9999999999999999999999999999999998 678999999999886433
No 85
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.98 E-value=4.6e-32 Score=259.09 Aligned_cols=137 Identities=27% Similarity=0.335 Sum_probs=109.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|++|++.++ +.||++|+
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni 96 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENM 96 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999873 79999998776 57999999
Q ss_pred HhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.++... ......+.+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~-----~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~~P------~lLLLDEPts~ 163 (369)
T PRK11000 97 SFGLKLAGAKKEEINQRVN-----QVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEP------SVFLLDEPLSN 163 (369)
T ss_pred HhHHhhcCCCHHHHHHHHH-----HHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCccc
Confidence 986421 1111111111 112222 2334456778899999999999999999998 88999999999
Q ss_pred CCceE
Q psy850 214 LQSIL 218 (280)
Q Consensus 214 l~~il 218 (280)
+|...
T Consensus 164 LD~~~ 168 (369)
T PRK11000 164 LDAAL 168 (369)
T ss_pred CCHHH
Confidence 98653
No 86
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.98 E-value=4.6e-32 Score=238.44 Aligned_cols=146 Identities=27% Similarity=0.331 Sum_probs=112.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------eEEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------TCAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------~ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|+++|+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI 93 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence 479999999999999999999999999999999999999999999987 279999998766 56999999
Q ss_pred HhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.++... ......+.+ ...+..+ +.....++++.+||||||||++|||||+.+| ++|+||||+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~p------~llllDEPt~~ 160 (213)
T cd03301 94 AFGLKLRKVPKDEIDERV-----REVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVREP------KVFLMDEPLSN 160 (213)
T ss_pred HHHHHhcCCCHHHHHHHH-----HHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCccc
Confidence 875321 111111111 1112222 2334456778899999999999999999998 88999999999
Q ss_pred CCceEEEeehhhhh
Q psy850 214 LQSILLMEEVNVYV 227 (280)
Q Consensus 214 l~~illlDE~~~~~ 227 (280)
+|.--...-.+++.
T Consensus 161 LD~~~~~~l~~~l~ 174 (213)
T cd03301 161 LDAKLRVQMRAELK 174 (213)
T ss_pred CCHHHHHHHHHHHH
Confidence 98754443334443
No 87
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.2e-31 Score=251.72 Aligned_cols=164 Identities=25% Similarity=0.331 Sum_probs=125.2
Q ss_pred CCCCCCCCCeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEE
Q psy850 8 VSKPIDKSSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGIC 87 (280)
Q Consensus 8 ~~~~~~~~~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIi 87 (280)
++.|...+..|+++|++|.|..... ....+|+||||+|++||+++|+
T Consensus 12 ~~~~~~~~~~l~~~nl~~~y~~~~~---------------------------------~~~~~L~~vsl~i~~Ge~~~I~ 58 (320)
T PRK13631 12 VPNPLSDDIILRVKNLYCVFDEKQE---------------------------------NELVALNNISYTFEKNKIYFII 58 (320)
T ss_pred CCCCCCCCceEEEEeEEEEeCCCCc---------------------------------ccccceeeeEEEEcCCCEEEEE
Confidence 3445556778999999999953210 0124799999999999999999
Q ss_pred CCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------------------eEEEEecCC--CCCCCcHHHHH
Q psy850 88 GAVGSGKSALLYAILSQLRSTAGKLSREG-----------------------------TCAYVSQEA--WITNDTLRHNI 136 (280)
Q Consensus 88 GpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------------------~ig~v~Q~~--~l~~~Tv~enI 136 (280)
||||||||||+++|+|+++|++|+|.++| .++||+|++ .++..|+++|+
T Consensus 59 G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni 138 (320)
T PRK13631 59 GNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDI 138 (320)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHH
Confidence 99999999999999999999999999874 168999997 57778999999
Q ss_pred HhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 137 LFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 137 ~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
.++... ......+.+. ..+..+ +.. ...++++.+|||||||||+|||||+.+| ++|||||||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p------~iLLLDEPts 205 (320)
T PRK13631 139 MFGPVALGVKKSEAKKLAK-----FYLNKM--GLDDSYLERSPFGLSGGQKRRVAIAGILAIQP------EILIFDEPTA 205 (320)
T ss_pred HhhHHhcCCCHHHHHHHHH-----HHHHHc--CCChhHhcCCcccCCHHHHHHHHHHHHHHcCC------CEEEEECCcc
Confidence 886321 1111111111 112222 222 3456778899999999999999999998 8899999999
Q ss_pred CCCce
Q psy850 213 SLQSI 217 (280)
Q Consensus 213 ~l~~i 217 (280)
++|..
T Consensus 206 gLD~~ 210 (320)
T PRK13631 206 GLDPK 210 (320)
T ss_pred CCCHH
Confidence 99764
No 88
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=7.9e-32 Score=240.72 Aligned_cols=146 Identities=25% Similarity=0.290 Sum_probs=111.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCCCCC-CC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEAWIT-ND 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~~l~-~~ 130 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF 102 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence 479999999999999999999999999999999999999999999986 278999998766 46
Q ss_pred cHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 131 TLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 131 Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
|+++|+.++.. .......+.+ ...+..+ +......+++.+||||||||++|||||+.+| ++|||
T Consensus 103 tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la~al~~~p------~lllL 169 (233)
T PRK11629 103 TALENVAMPLLIGKKKPAEINSRA-----LEMLAAV--GLEHRANHRPSELSGGERQRVAIARALVNNP------RLVLA 169 (233)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEE
Confidence 99999987421 1111111111 1112222 2334456678899999999999999999998 88999
Q ss_pred ccccCCCCceEEEeehhhhh
Q psy850 208 LCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 208 dep~~~l~~illlDE~~~~~ 227 (280)
|||++++|..-...-.+++.
T Consensus 170 DEPt~~LD~~~~~~l~~~l~ 189 (233)
T PRK11629 170 DEPTGNLDARNADSIFQLLG 189 (233)
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99999998754433333333
No 89
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=4.2e-32 Score=240.29 Aligned_cols=146 Identities=19% Similarity=0.279 Sum_probs=110.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------eEEEEecCCCCC-CCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------TCAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------~ig~v~Q~~~l~-~~Tv~en 135 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|+++|
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN 93 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence 479999999999999999999999999999999999999999999987 379999998665 4699999
Q ss_pred HHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+.+.... ........+ ...+..+ +.....+.++.+|||||||||+|||||+.+| ++|+||||++
T Consensus 94 l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~p------~llllDEPt~ 160 (220)
T cd03265 94 LYIHARLYGVPGAERRERI-----DELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHRP------EVLFLDEPTI 160 (220)
T ss_pred HHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCcc
Confidence 9864211 111111111 1112222 2233446678899999999999999999998 8899999999
Q ss_pred CCCceEEEeehhhhh
Q psy850 213 SLQSILLMEEVNVYV 227 (280)
Q Consensus 213 ~l~~illlDE~~~~~ 227 (280)
++|..-.-.-.+.+.
T Consensus 161 ~LD~~~~~~l~~~l~ 175 (220)
T cd03265 161 GLDPQTRAHVWEYIE 175 (220)
T ss_pred CCCHHHHHHHHHHHH
Confidence 998754333333333
No 90
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=1.2e-33 Score=247.26 Aligned_cols=154 Identities=25% Similarity=0.391 Sum_probs=120.5
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCC-CC
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWIT-ND 130 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~ 130 (280)
.++.++++|||+|++||+++++|||||||||.+.++.|+++|++|+|.+++. +||+||++.+| ..
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~L 94 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKL 94 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcC
Confidence 3567999999999999999999999999999999999999999999999983 79999999888 67
Q ss_pred cHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 131 TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 131 Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
||++||..-.+..............+...++.+ ...+..+.++.+||||||+|+.|||||+.+| +|++||||
T Consensus 95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P------~fiLLDEP 166 (243)
T COG1137 95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANP------KFILLDEP 166 (243)
T ss_pred cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCC------CEEEecCC
Confidence 999999764332211111111111111122211 2334455677889999999999999999998 99999999
Q ss_pred cCCCCceEEEeehhhhh
Q psy850 211 CVSLQSILLMEEVNVYV 227 (280)
Q Consensus 211 ~~~l~~illlDE~~~~~ 227 (280)
|.+.|++-+-|..+++.
T Consensus 167 FAGVDPiaV~dIq~iI~ 183 (243)
T COG1137 167 FAGVDPIAVIDIQRIIK 183 (243)
T ss_pred ccCCCchhHHHHHHHHH
Confidence 99999999888776654
No 91
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=2.8e-32 Score=236.33 Aligned_cols=147 Identities=24% Similarity=0.350 Sum_probs=111.4
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------------EEEEecCC--CCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------------CAYVSQEA--WITND 130 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------------ig~v~Q~~--~l~~~ 130 (280)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++ .++..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 45899999999999999999999999999999999999999999998762 68999997 35677
Q ss_pred cHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 131 TLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 131 Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
|+++|+.++.. .......+.+. ..+..+ +.....++++.+||||||||++|||||+.+| ++|||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~llll 151 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVR-----EALTAV--GASGLRERPTHCLSGGEKKRVAIAGAVAMRP------DVLLL 151 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CchhhhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEE
Confidence 99999987421 11111111111 111211 2233456678899999999999999999998 88999
Q ss_pred ccccCCCCceEEEeehhhhh
Q psy850 208 LCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 208 dep~~~l~~illlDE~~~~~ 227 (280)
|||++++|..-.-.-.+++.
T Consensus 152 DEPt~~LD~~~~~~~~~~l~ 171 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILR 171 (190)
T ss_pred cCCcccCCHHHHHHHHHHHH
Confidence 99999998754443334443
No 92
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.97 E-value=1.1e-31 Score=237.37 Aligned_cols=137 Identities=26% Similarity=0.305 Sum_probs=107.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCCCCC-CC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEAWIT-ND 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~~l~-~~ 130 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 479999999999999999999999999999999999999999999875 279999998766 57
Q ss_pred cHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 131 TLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 131 Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
|+++|+.+... .......+.+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|+|
T Consensus 99 tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~illl 165 (221)
T TIGR02211 99 TALENVAMPLLIGKKSVKEAKERA-----YEMLEKV--GLEHRINHRPSELSGGERQRVAIARALVNQP------SLVLA 165 (221)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhCCC------CEEEE
Confidence 99999986421 1111111111 1122222 2334456677899999999999999999998 88999
Q ss_pred ccccCCCCceE
Q psy850 208 LCPCVSLQSIL 218 (280)
Q Consensus 208 dep~~~l~~il 218 (280)
|||++++|..-
T Consensus 166 DEPt~~LD~~~ 176 (221)
T TIGR02211 166 DEPTGNLDNNN 176 (221)
T ss_pred eCCCCcCCHHH
Confidence 99999998643
No 93
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=7.6e-32 Score=230.17 Aligned_cols=110 Identities=27% Similarity=0.419 Sum_probs=100.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCCCCCcHHHHHHhCCCCChhh
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWITNDTLRHNILFGEPFEPQR 146 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~ 146 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++.+++.|+++|+.++
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~------- 87 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP------- 87 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc-------
Confidence 479999999999999999999999999999999999999999999987 79999999887788999999752
Q ss_pred HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceE
Q psy850 147 YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 147 ~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~il 218 (280)
++.+||||||||++|||||+.+| ++|+||||++++|..-
T Consensus 88 ---------------------------~~~~LS~G~~~rv~laral~~~p------~~lllDEPt~~LD~~~ 126 (166)
T cd03223 88 ---------------------------WDDVLSGGEQQRLAFARLLLHKP------KFVFLDEATSALDEES 126 (166)
T ss_pred ---------------------------CCCCCCHHHHHHHHHHHHHHcCC------CEEEEECCccccCHHH
Confidence 23579999999999999999998 8899999999998643
No 94
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=5.9e-32 Score=237.92 Aligned_cols=147 Identities=23% Similarity=0.342 Sum_probs=111.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------------eEEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------------TCAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------------~ig~v~Q~~~l~-~~T 131 (280)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT 95 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence 479999999999999999999999999999999999999999999876 268999998776 479
Q ss_pred HHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
+.+|+.++... ........+ ...+..+ +......+++.+|||||||||+|||||+.+| ++||||
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p------~lllLD 162 (214)
T TIGR02673 96 VYENVALPLEVRGKKEREIQRRV-----GAALRQV--GLEHKADAFPEQLSGGEQQRVAIARAIVNSP------PLLLAD 162 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhCCC------CEEEEe
Confidence 99999875211 111111111 1112221 2223345667889999999999999999998 889999
Q ss_pred cccCCCCceEEEeehhhhhc
Q psy850 209 CPCVSLQSILLMEEVNVYVS 228 (280)
Q Consensus 209 ep~~~l~~illlDE~~~~~~ 228 (280)
||++++|..-...-.+++..
T Consensus 163 EPt~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 163 EPTGNLDPDLSERILDLLKR 182 (214)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999988654444444443
No 95
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=5.6e-32 Score=241.39 Aligned_cols=150 Identities=23% Similarity=0.271 Sum_probs=112.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCCC-CcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWITN-DTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~~-~Tv~ 133 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++ .|++
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 4799999999999999999999999999999999999999999998872 789999987664 6999
Q ss_pred HHHHhCCCCCh-hh--------HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 134 HNILFGEPFEP-QR--------YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 134 enI~~g~~~~~-~~--------~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
+|+.++..... .. ...... ......+..+ +.....++++.+|||||||||+|||||+.+| ++
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p------~l 164 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREAR-ERAEELLERV--GLADLADRPAGELSYGQQRRLEIARALATDP------KL 164 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHH-HHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHHHHhcCC------CE
Confidence 99987532110 00 000000 0111222222 2334456778899999999999999999998 88
Q ss_pred hhhccccCCCCceEEEeehhhhh
Q psy850 205 LVLLCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 205 l~ldep~~~l~~illlDE~~~~~ 227 (280)
|+||||++++|..-...-.+.+.
T Consensus 165 lllDEPt~~LD~~~~~~l~~~l~ 187 (236)
T cd03219 165 LLLDEPAAGLNPEETEELAELIR 187 (236)
T ss_pred EEEcCCcccCCHHHHHHHHHHHH
Confidence 99999999998754433333333
No 96
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=4.7e-32 Score=238.10 Aligned_cols=147 Identities=29% Similarity=0.355 Sum_probs=111.8
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCC--CCCCcH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAW--ITNDTL 132 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~--l~~~Tv 132 (280)
+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++. ++..|+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 35899999999999999999999999999999999999999999999873 689999973 567899
Q ss_pred HHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 133 RHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 133 ~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
++|+.++.. .........+. ..+..+ +....+.+++.+|||||||||+|||||+.+| ++|||||
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~p------~llllDE 160 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVE-----EALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP------DILLLDE 160 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC------CEEEEcC
Confidence 999987421 11111111111 112211 2233456778899999999999999999998 8899999
Q ss_pred ccCCCCceEEEeehhhhh
Q psy850 210 PCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 210 p~~~l~~illlDE~~~~~ 227 (280)
|++++|....-.-.+++.
T Consensus 161 Pt~~LD~~~~~~~~~~l~ 178 (211)
T cd03225 161 PTAGLDPAGRRELLELLK 178 (211)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999998854443334443
No 97
>KOG0056|consensus
Probab=99.97 E-value=1.9e-32 Score=264.36 Aligned_cols=159 Identities=29% Similarity=0.507 Sum_probs=142.3
Q ss_pred CCeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCcH
Q psy850 15 SSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGK 94 (280)
Q Consensus 15 ~~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGK 94 (280)
..-|++.|++|.|++. +++|+||||++.+|+.+|+|||+|+||
T Consensus 535 ~G~i~fsnvtF~Y~p~-------------------------------------k~vl~disF~v~pGktvAlVG~SGaGK 577 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPG-------------------------------------KPVLSDISFTVQPGKTVALVGPSGAGK 577 (790)
T ss_pred CCeEEEEEeEEecCCC-------------------------------------CceeecceEEecCCcEEEEECCCCCch
Confidence 5578999999998774 468999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHHHHhCCCC-ChhhHHHHHHHhhhhhhH
Q psy850 95 SALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHNILFGEPF-EPQRYYKTLYNCALNTDI 160 (280)
Q Consensus 95 STLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~enI~~g~~~-~~~~~~~~~~~~~l~~~l 160 (280)
||+||++.++++..+|.|+++|+ ||.|||+..+|+.|+..||.++++. ..++...+.+.+.+.+.+
T Consensus 578 STimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrI 657 (790)
T KOG0056|consen 578 STIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRI 657 (790)
T ss_pred hHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHH
Confidence 99999999999999999999994 8999999999999999999999754 345666777777788888
Q ss_pred hhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 161 ~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
..+|++..+.+++|+..|||||||||+|||+++..| .+++|||.||++|.
T Consensus 658 l~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P------~iIlLDEATSALDT 707 (790)
T KOG0056|consen 658 LQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP------SIILLDEATSALDT 707 (790)
T ss_pred hcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC------cEEEEcchhhhcCC
Confidence 899999999999999999999999999999999998 66777888777754
No 98
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7e-32 Score=243.54 Aligned_cols=151 Identities=28% Similarity=0.337 Sum_probs=118.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCC--CCCCCcH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEA--WITNDTL 132 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~--~l~~~Tv 132 (280)
.+|+++||+|++|++++|+||||||||||+++++|+++|++|.|.++|. +|||||+| .++..||
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV 97 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTV 97 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcH
Confidence 4799999999999999999999999999999999999999999988773 89999998 6778899
Q ss_pred HHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 133 RHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 133 ~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
.+.++||... ..++..+++.... ... +......+.+.+|||||||||+||.+|+.+| ++|||||
T Consensus 98 ~~evafg~~n~g~~~~e~~~rv~~~l-----~~v--gl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P------~iliLDE 164 (235)
T COG1122 98 EDEVAFGLENLGLPREEIEERVAEAL-----ELV--GLEELLDRPPFNLSGGQKQRVAIAGVLAMGP------EILLLDE 164 (235)
T ss_pred HHHHhhchhhcCCCHHHHHHHHHHHH-----HHc--CchhhccCCccccCCcceeeHHhhHHHHcCC------CEEEEcC
Confidence 9999998642 2222333332221 111 2333356788999999999999999999998 8899999
Q ss_pred ccCCCCceEEEeehhhhhccCcc
Q psy850 210 PCVSLQSILLMEEVNVYVSKPID 232 (280)
Q Consensus 210 p~~~l~~illlDE~~~~~~~~~~ 232 (280)
||+++|+--.-+-.+++.+.+-+
T Consensus 165 Pta~LD~~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 165 PTAGLDPKGRRELLELLKKLKEE 187 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999875444444444444433
No 99
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=9.2e-32 Score=238.33 Aligned_cols=141 Identities=30% Similarity=0.355 Sum_probs=105.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------------eEEEEecCC--CCC-C
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------------TCAYVSQEA--WIT-N 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------------~ig~v~Q~~--~l~-~ 129 (280)
.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++| .++|++|++ .++ .
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 479999999999999999999999999999999999999999999876 278999998 333 5
Q ss_pred CcHHHHHHhCCCCC-hhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 130 DTLRHNILFGEPFE-PQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 130 ~Tv~enI~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
.|+++|+.++.... ........... ....+..+ +. ....++++.+|||||||||+|||||+.+| ++|+|
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~-~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p------~lllL 169 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEA-VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVAIARALALNP------KLLIA 169 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHH-HHHHHHHC--CCChhHhhCCchhcCHHHHHHHHHHHHHhcCC------CEEEe
Confidence 79999997642110 00000000100 01112222 22 23456778899999999999999999998 88999
Q ss_pred ccccCCCCceE
Q psy850 208 LCPCVSLQSIL 218 (280)
Q Consensus 208 dep~~~l~~il 218 (280)
|||++++|..-
T Consensus 170 DEPt~~LD~~~ 180 (228)
T cd03257 170 DEPTSALDVSV 180 (228)
T ss_pred cCCCCCCCHHH
Confidence 99999998754
No 100
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.7e-32 Score=248.30 Aligned_cols=136 Identities=29% Similarity=0.440 Sum_probs=107.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC---------------eEEEEecCC--CCCCCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---------------TCAYVSQEA--WITNDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G---------------~ig~v~Q~~--~l~~~T 131 (280)
.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++|+||++ .++..|
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 479999999999999999999999999999999999999999999877 269999987 456789
Q ss_pred HHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCc--hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 132 LRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQ--TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 132 v~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~--~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
+++|+.++.. .......+.+. ..+..+ +.. +..++++.+||||||||++|||||+.+| ++||
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P------~lll 167 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVK-----RAMNIV--GLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEP------KILI 167 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHH-----HHHHHc--CCCchhhccCCcccCCHHHHHHHHHHHHHHcCC------CEEE
Confidence 9999987532 11111111111 112211 121 3456778899999999999999999998 8899
Q ss_pred hccccCCCCce
Q psy850 207 LLCPCVSLQSI 217 (280)
Q Consensus 207 ldep~~~l~~i 217 (280)
||||++++|..
T Consensus 168 lDEPt~gLD~~ 178 (287)
T PRK13637 168 LDEPTAGLDPK 178 (287)
T ss_pred EECCccCCCHH
Confidence 99999999764
No 101
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.97 E-value=6.2e-32 Score=238.43 Aligned_cols=145 Identities=24% Similarity=0.312 Sum_probs=111.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------eEEEEecCCCCCC-CcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------TCAYVSQEAWITN-DTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------~ig~v~Q~~~l~~-~Tv~en 135 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .|+++|
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 479999999999999999999999999999999999999999999987 2799999987765 699999
Q ss_pred HHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+.+.... ........+ ...++.+ +....+++++.+||||||||++|||||+.+| ++|+||||++
T Consensus 99 l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~illlDEPt~ 165 (218)
T cd03266 99 LEYFAGLYGLKGDELTARL-----EELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVHDP------PVLLLDEPTT 165 (218)
T ss_pred HHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC------CEEEEcCCCc
Confidence 9763211 111111111 1122222 2334456778899999999999999999998 8899999999
Q ss_pred CCCceEEEeehhhh
Q psy850 213 SLQSILLMEEVNVY 226 (280)
Q Consensus 213 ~l~~illlDE~~~~ 226 (280)
++|..-.-.-.+++
T Consensus 166 ~LD~~~~~~l~~~l 179 (218)
T cd03266 166 GLDVMATRALREFI 179 (218)
T ss_pred CCCHHHHHHHHHHH
Confidence 99875443333333
No 102
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=1.3e-31 Score=240.12 Aligned_cols=142 Identities=30% Similarity=0.345 Sum_probs=108.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l~-~~T 131 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT 95 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence 4799999999999999999999999999999999999999999999872 69999998766 579
Q ss_pred HHHHHHhCCCCChh---hH---HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 132 LRHNILFGEPFEPQ---RY---YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 132 v~enI~~g~~~~~~---~~---~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
+++|+.++...... .. ............+..+ +.....++++.+|||||||||+|||||+.+| ++|
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p------~ll 167 (243)
T TIGR02315 96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIARALAQQP------DLI 167 (243)
T ss_pred HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC------CEE
Confidence 99999875321100 00 0000000111112222 2334456778899999999999999999998 889
Q ss_pred hhccccCCCCceE
Q psy850 206 VLLCPCVSLQSIL 218 (280)
Q Consensus 206 ~ldep~~~l~~il 218 (280)
+||||++++|..-
T Consensus 168 llDEPt~~LD~~~ 180 (243)
T TIGR02315 168 LADEPIASLDPKT 180 (243)
T ss_pred EEeCCcccCCHHH
Confidence 9999999998643
No 103
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=1.1e-31 Score=250.41 Aligned_cols=136 Identities=26% Similarity=0.356 Sum_probs=107.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------eEEEEecCCCCC-CCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------TCAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------~ig~v~Q~~~l~-~~Tv~en 135 (280)
.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++||+||++.++ ..|++||
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~ 100 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVREN 100 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHH
Confidence 479999999999999999999999999999999999999999999987 389999998776 5799999
Q ss_pred HHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+.+.... ........+ ...+..+ +.....+++..+||||||||++|||||+++| ++|+||||++
T Consensus 101 l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P------~lllLDEPt~ 167 (306)
T PRK13537 101 LLVFGRYFGLSAAAARALV-----PPLLEFA--KLENKADAKVGELSGGMKRRLTLARALVNDP------DVLVLDEPTT 167 (306)
T ss_pred HHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHhCCC------CEEEEeCCCc
Confidence 9753211 111111111 1112211 2233445667789999999999999999998 8899999999
Q ss_pred CCCce
Q psy850 213 SLQSI 217 (280)
Q Consensus 213 ~l~~i 217 (280)
++|+.
T Consensus 168 gLD~~ 172 (306)
T PRK13537 168 GLDPQ 172 (306)
T ss_pred CCCHH
Confidence 99764
No 104
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.2e-32 Score=236.99 Aligned_cols=139 Identities=22% Similarity=0.350 Sum_probs=108.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC---------eEEEEecCCCCC-CCcHHHHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---------TCAYVSQEAWIT-NDTLRHNIL 137 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G---------~ig~v~Q~~~l~-~~Tv~enI~ 137 (280)
+.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|+++|+.
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 92 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLV 92 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHH
Confidence 3479999999999999999999999999999999999999999999987 389999998766 469999997
Q ss_pred hCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 138 FGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 138 ~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.... ......+.+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||++++
T Consensus 93 ~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p------~~lllDEP~~~L 159 (210)
T cd03269 93 YLAQLKGLKKEEARRRI-----DEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDP------ELLILDEPFSGL 159 (210)
T ss_pred HHHHHcCCChHHHHHHH-----HHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCCcCC
Confidence 64211 111111111 1122222 2334455677889999999999999999998 889999999999
Q ss_pred CceEE
Q psy850 215 QSILL 219 (280)
Q Consensus 215 ~~ill 219 (280)
|.--.
T Consensus 160 D~~~~ 164 (210)
T cd03269 160 DPVNV 164 (210)
T ss_pred CHHHH
Confidence 87533
No 105
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=8.5e-32 Score=236.50 Aligned_cols=138 Identities=29% Similarity=0.320 Sum_probs=108.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------------EEEEecCCCCC-CCcH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------------CAYVSQEAWIT-NDTL 132 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------------ig~v~Q~~~l~-~~Tv 132 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+ ++|++|++.++ ..|+
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence 4799999999999999999999999999999999999999999998873 68999998766 4799
Q ss_pred HHHHHhCCC----CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 133 RHNILFGEP----FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 133 ~enI~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
.+|+.++.. .......+.+ ...+..+ +....+.+++.+||||||||++|||||+.+| ++||||
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p------~llllD 160 (213)
T cd03262 94 LENITLAPIKVKGMSKAEAEERA-----LELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMNP------KVMLFD 160 (213)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHH-----HHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHhcCC------CEEEEe
Confidence 999987521 1111111111 1122222 2334456778899999999999999999998 889999
Q ss_pred cccCCCCceEE
Q psy850 209 CPCVSLQSILL 219 (280)
Q Consensus 209 ep~~~l~~ill 219 (280)
||++++|..-.
T Consensus 161 EP~~~LD~~~~ 171 (213)
T cd03262 161 EPTSALDPELV 171 (213)
T ss_pred CCccCCCHHHH
Confidence 99999987433
No 106
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.97 E-value=9.8e-32 Score=238.77 Aligned_cols=147 Identities=27% Similarity=0.363 Sum_probs=110.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCCceEEECCe---------------EEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-----RSTAGKLSREGT---------------CAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~-----~p~~G~I~i~G~---------------ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|. ++|++|++.++
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 93 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF 93 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence 4799999999999999999999999999999999999 999999998872 68999998777
Q ss_pred CCcHHHHHHhCCCCC---hhh-HHHHHHHhhhhhhHhhCCCCCchhhccC--CCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPFE---PQR-YYKTLYNCALNTDIHILPGGDQTEIGER--GINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~---~~~-~~~~~~~~~l~~~l~~l~~g~~~~i~~~--~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
..|+++|+.++.... ... ..+.+. ..+..+ +......++ +.+|||||||||+|||||+.+|
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p------ 160 (227)
T cd03260 94 PGSIYDNVAYGLRLHGIKLKEELDERVE-----EALRKA--ALWDEVKDRLHALGLSGGQQQRLCLARALANEP------ 160 (227)
T ss_pred cccHHHHHHhHHHhcCCCcHHHHHHHHH-----HHHHHc--CCChHHhccCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 789999998753211 100 111111 112211 222233344 4889999999999999999998
Q ss_pred hhhhhccccCCCCceEEEeehhhhhc
Q psy850 203 HFLVLLCPCVSLQSILLMEEVNVYVS 228 (280)
Q Consensus 203 ~ll~ldep~~~l~~illlDE~~~~~~ 228 (280)
++|+||||++++|..-...-.+++..
T Consensus 161 ~llllDEPt~~LD~~~~~~l~~~l~~ 186 (227)
T cd03260 161 EVLLLDEPTSALDPISTAKIEELIAE 186 (227)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 88999999999987544433344433
No 107
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=8e-32 Score=238.10 Aligned_cols=146 Identities=27% Similarity=0.394 Sum_probs=110.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCCC-CcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWITN-DTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~~-~Tv~ 133 (280)
.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++ .|++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 4799999999999999999999999999999999999999999998872 789999987664 6999
Q ss_pred HHHHhCCCCCh-hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 134 HNILFGEPFEP-QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 134 enI~~g~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+|+.++..... ......+. ..+..+. +.....++++.+|||||||||+|||||+.+| ++|+||||++
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~llllDEPt~ 161 (222)
T cd03224 94 ENLLLGAYARRRAKRKARLE-----RVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP------KLLLLDEPSE 161 (222)
T ss_pred HHHHHHhhhcCchhHHHHHH-----HHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC------CEEEECCCcc
Confidence 99987643211 11111111 1111110 1123345677889999999999999999998 8899999999
Q ss_pred CCCceEEEeehhhh
Q psy850 213 SLQSILLMEEVNVY 226 (280)
Q Consensus 213 ~l~~illlDE~~~~ 226 (280)
++|....-.-.+++
T Consensus 162 ~LD~~~~~~l~~~l 175 (222)
T cd03224 162 GLAPKIVEEIFEAI 175 (222)
T ss_pred cCCHHHHHHHHHHH
Confidence 99875443333333
No 108
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.3e-31 Score=245.81 Aligned_cols=136 Identities=24% Similarity=0.297 Sum_probs=108.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCC--CCCCCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEA--WITNDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~--~l~~~Tv~ 133 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++ .++..|+.
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 3799999999999999999999999999999999999999999999872 79999997 46678999
Q ss_pred HHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
+|+.++... ......+.+. ..+..+ +......+++.+|||||||||+|||||+.+| ++|+||||
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~~~p------~llllDEP 165 (274)
T PRK13647 99 DDVAFGPVNMGLDKDEVERRVE-----EALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLAMDP------DVIVLDEP 165 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHH-----HHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEECC
Confidence 999876321 1111111111 112211 2234456678899999999999999999998 88999999
Q ss_pred cCCCCce
Q psy850 211 CVSLQSI 217 (280)
Q Consensus 211 ~~~l~~i 217 (280)
++++|..
T Consensus 166 t~~LD~~ 172 (274)
T PRK13647 166 MAYLDPR 172 (274)
T ss_pred CcCCCHH
Confidence 9999764
No 109
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=7.6e-32 Score=236.52 Aligned_cols=138 Identities=25% Similarity=0.329 Sum_probs=107.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|+++|+
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 93 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence 5799999999999999999999999999999999999999999999872 78999998665 67999999
Q ss_pred HhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 137 LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 137 ~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.++....... ...+. ..+..+ +......+++.+|||||||||+|||||+.+| ++|+||||++++|.
T Consensus 94 ~~~~~~~~~~-~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p------~llllDEPt~~LD~ 159 (208)
T cd03268 94 RLLARLLGIR-KKRID-----EVLDVV--GLKDSAKKKVKGFSLGMKQRLGIALALLGNP------DLLILDEPTNGLDP 159 (208)
T ss_pred HHHHHhcCCc-HHHHH-----HHHHHc--CCHHHHhhhHhhCCHHHHHHHHHHHHHhcCC------CEEEECCCcccCCH
Confidence 7643211000 11111 111111 2223345667889999999999999999998 78999999999987
Q ss_pred eEEE
Q psy850 217 ILLM 220 (280)
Q Consensus 217 illl 220 (280)
.-.-
T Consensus 160 ~~~~ 163 (208)
T cd03268 160 DGIK 163 (208)
T ss_pred HHHH
Confidence 5433
No 110
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=2.2e-31 Score=237.14 Aligned_cols=148 Identities=27% Similarity=0.306 Sum_probs=112.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++.|+++|
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en 100 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDN 100 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHH
Confidence 4799999999999999999999999999999999999999999999872 789999988887899999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.+........... ......+..+ +. ....++++.+|||||||||+|||||+.+| ++||||||+.++
T Consensus 101 l~~~~~~~~~~~~~----~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p------~llllDEPt~~L 168 (225)
T PRK10247 101 LIFPWQIRNQQPDP----AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFMP------KVLLLDEITSAL 168 (225)
T ss_pred HHhHHhhcCCChHH----HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccC
Confidence 98642111100000 0111122222 22 23456778899999999999999999998 889999999999
Q ss_pred CceEEEeehhhhhc
Q psy850 215 QSILLMEEVNVYVS 228 (280)
Q Consensus 215 ~~illlDE~~~~~~ 228 (280)
|..-.-.-.+++.+
T Consensus 169 D~~~~~~l~~~l~~ 182 (225)
T PRK10247 169 DESNKHNVNEIIHR 182 (225)
T ss_pred CHHHHHHHHHHHHH
Confidence 87544333344443
No 111
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=6.9e-32 Score=237.24 Aligned_cols=147 Identities=27% Similarity=0.357 Sum_probs=112.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCCCC-Cc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWITN-DT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l~~-~T 131 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++ .|
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 4799999999999999999999999999999999999999999998863 799999987664 69
Q ss_pred HHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
+++|+.++... ......+.+ ...+..+ +.....+.++.+||||||||++|||||+.+| ++|+||
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~llllD 161 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRV-----PAALELV--GLSHKHRALPAELSGGEQQRVAIARAIVNSP------TILIAD 161 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHHHcCC------CEEEEe
Confidence 99999875311 111111111 1112221 2233445677899999999999999999998 889999
Q ss_pred cccCCCCceEEEeehhhhhc
Q psy850 209 CPCVSLQSILLMEEVNVYVS 228 (280)
Q Consensus 209 ep~~~l~~illlDE~~~~~~ 228 (280)
||++++|..-...-.+++..
T Consensus 162 EPt~~LD~~~~~~~~~~l~~ 181 (214)
T cd03292 162 EPTGNLDPDTTWEIMNLLKK 181 (214)
T ss_pred CCCCcCCHHHHHHHHHHHHH
Confidence 99999987544444444443
No 112
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-31 Score=254.18 Aligned_cols=136 Identities=29% Similarity=0.387 Sum_probs=108.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------------eEEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------------TCAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------------~ig~v~Q~~~l~-~~T 131 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t 98 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence 479999999999999999999999999999999999999999999986 279999998776 479
Q ss_pred HHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
+++|+.++... ........+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|+||
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p------~iLlLD 165 (343)
T PRK11153 99 VFDNVALPLELAGTPKAEIKARV-----TELLELV--GLSDKADRYPAQLSGGQKQRVAIARALASNP------KVLLCD 165 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHcCC------CEEEEe
Confidence 99999875321 111111111 1122222 2334456778899999999999999999998 889999
Q ss_pred cccCCCCce
Q psy850 209 CPCVSLQSI 217 (280)
Q Consensus 209 ep~~~l~~i 217 (280)
|||+++|..
T Consensus 166 EPts~LD~~ 174 (343)
T PRK11153 166 EATSALDPA 174 (343)
T ss_pred CCcccCCHH
Confidence 999999864
No 113
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.3e-31 Score=238.92 Aligned_cols=136 Identities=29% Similarity=0.385 Sum_probs=107.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCCCC-Cc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWITN-DT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l~~-~T 131 (280)
++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++. .|
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 5799999999999999999999999999999999999999999998762 689999987774 79
Q ss_pred HHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
+++|+.++... ........+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++||||
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p------~lllLD 165 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERV-----LELLELV--GLEDKADAYPAQLSGGQKQRVGIARALANNP------KVLLCD 165 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHHHhcCC------CEEEec
Confidence 99999864211 111111111 1122222 2334456677899999999999999999998 889999
Q ss_pred cccCCCCce
Q psy850 209 CPCVSLQSI 217 (280)
Q Consensus 209 ep~~~l~~i 217 (280)
||++++|..
T Consensus 166 EP~~~LD~~ 174 (233)
T cd03258 166 EATSALDPE 174 (233)
T ss_pred CCCCcCCHH
Confidence 999999864
No 114
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.97 E-value=9.4e-32 Score=237.58 Aligned_cols=147 Identities=24% Similarity=0.327 Sum_probs=111.1
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCCC-CCcHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l~-~~Tv~e 134 (280)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|+++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 35799999999999999999999999999999999999999999999873 69999998776 679999
Q ss_pred HHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 135 NILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 135 nI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
|+.+.... ......+.+. ..+..+ +.....+.++.+|||||||||+|||||+.+| ++|+||||+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p------~llllDEP~ 161 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVE-----LLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGGP------SVLLLDEPT 161 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcCC------CEEEECCCC
Confidence 99864211 1111111111 112211 2223345667889999999999999999998 889999999
Q ss_pred CCCCceEEEeehhhhh
Q psy850 212 VSLQSILLMEEVNVYV 227 (280)
Q Consensus 212 ~~l~~illlDE~~~~~ 227 (280)
+++|.--.-.-.+++.
T Consensus 162 ~~LD~~~~~~l~~~l~ 177 (220)
T cd03263 162 SGLDPASRRAIWDLIL 177 (220)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9998754333333333
No 115
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.97 E-value=1.2e-31 Score=238.81 Aligned_cols=137 Identities=28% Similarity=0.428 Sum_probs=107.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCCC-CcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWITN-DTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~~-~Tv~ 133 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++ .|++
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE 93 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence 4799999999999999999999999999999999999999999998762 789999987664 5999
Q ss_pred HHHHhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
+|+.++.... .......+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p------~llllDEP 160 (232)
T cd03218 94 ENILAVLEIRGLSKKEREEKL-----EELLEEF--HITHLRKSKASSLSGGERRRVEIARALATNP------KFLLLDEP 160 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEecCC
Confidence 9998743211 11111111 1122222 2334456778899999999999999999998 88999999
Q ss_pred cCCCCceE
Q psy850 211 CVSLQSIL 218 (280)
Q Consensus 211 ~~~l~~il 218 (280)
++++|..-
T Consensus 161 t~~LD~~~ 168 (232)
T cd03218 161 FAGVDPIA 168 (232)
T ss_pred cccCCHHH
Confidence 99998753
No 116
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-31 Score=245.36 Aligned_cols=136 Identities=26% Similarity=0.354 Sum_probs=108.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCC--CCCCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAW--ITNDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~--l~~~Tv~ 133 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++. ++..||+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 3799999999999999999999999999999999999999999999883 699999973 5577999
Q ss_pred HHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
+|+.++... ......+.+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++||||||
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~~~p------~lLlLDEP 167 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVN-----EALELV--GMQDFKEREPARLSGGQKQRVAIAGAVAMRP------KIIILDEA 167 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHH-----HHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHHcCC------CEEEEECC
Confidence 999886321 1111111111 112221 2334456778899999999999999999998 88999999
Q ss_pred cCCCCce
Q psy850 211 CVSLQSI 217 (280)
Q Consensus 211 ~~~l~~i 217 (280)
++++|..
T Consensus 168 t~~LD~~ 174 (279)
T PRK13650 168 TSMLDPE 174 (279)
T ss_pred cccCCHH
Confidence 9999764
No 117
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=5.7e-32 Score=251.19 Aligned_cols=152 Identities=26% Similarity=0.346 Sum_probs=117.0
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------eEEEEecCCCCC-CCcHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------TCAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------~ig~v~Q~~~l~-~~Tv~e 134 (280)
+.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++| ++||++|++.++ ..|++|
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e 97 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRE 97 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHH
Confidence 5789999999999999999999999999999999999999999999998 389999998655 779999
Q ss_pred HHHhCCCCChh---hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 135 NILFGEPFEPQ---RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 135 nI~~g~~~~~~---~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
|+.|....... ...+.+. ..+..+ ++....+++..+||+|||||++||+||+.+| ++|||||||
T Consensus 98 ~l~~~~~l~~~~~~~~~~~~~-----~~l~~~--~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P------~lliLDEPt 164 (293)
T COG1131 98 NLEFFARLYGLSKEEAEERIE-----ELLELF--GLEDKANKKVRTLSGGMKQRLSIALALLHDP------ELLILDEPT 164 (293)
T ss_pred HHHHHHHHhCCChhHHHHHHH-----HHHHHc--CCchhhCcchhhcCHHHHHHHHHHHHHhcCC------CEEEECCCC
Confidence 99874322110 1111111 112222 1111225567789999999999999999998 889999999
Q ss_pred CCCCceEEEeehhhhhccCcc
Q psy850 212 VSLQSILLMEEVNVYVSKPID 232 (280)
Q Consensus 212 ~~l~~illlDE~~~~~~~~~~ 232 (280)
+++|+....+-.+++.+..-+
T Consensus 165 ~GLDp~~~~~~~~~l~~l~~~ 185 (293)
T COG1131 165 SGLDPESRREIWELLRELAKE 185 (293)
T ss_pred cCCCHHHHHHHHHHHHHHHhC
Confidence 999987666655555554443
No 118
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.97 E-value=1.7e-31 Score=244.04 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=107.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCCCC-Cc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWITN-DT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l~~-~T 131 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++ .|
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 100 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMN 100 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCC
Confidence 4799999999999999999999999999999999999999999998862 789999987765 59
Q ss_pred HHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 132 LRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 132 v~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
+.+|+.++... ........+ ...+..+ +.....+.++.+|||||||||+|||||+.+| ++|||
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~laral~~~p------~lllL 167 (269)
T PRK11831 101 VFDNVAYPLREHTQLPAPLLHSTV-----MMKLEAV--GLRGAAKLMPSELSGGMARRAALARAIALEP------DLIMF 167 (269)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHH-----HHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEE
Confidence 99999864211 111001111 1112222 2233456678899999999999999999998 88999
Q ss_pred ccccCCCCceE
Q psy850 208 LCPCVSLQSIL 218 (280)
Q Consensus 208 dep~~~l~~il 218 (280)
||||+++|..-
T Consensus 168 DEPt~~LD~~~ 178 (269)
T PRK11831 168 DEPFVGQDPIT 178 (269)
T ss_pred cCCCccCCHHH
Confidence 99999998743
No 119
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=1.5e-31 Score=248.69 Aligned_cols=136 Identities=26% Similarity=0.379 Sum_probs=106.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------eEEEEecCCCCC-CCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------TCAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------~ig~v~Q~~~l~-~~Tv~en 135 (280)
.+|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|+++|
T Consensus 18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 97 (303)
T TIGR01288 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVREN 97 (303)
T ss_pred EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHH
Confidence 479999999999999999999999999999999999999999999987 279999998766 5799999
Q ss_pred HHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+.+... .........+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p------~lllLDEPt~ 164 (303)
T TIGR01288 98 LLVFGRYFGMSTREIEAVIP-----SLLEFA--RLESKADVRVALLSGGMKRRLTLARALINDP------QLLILDEPTT 164 (303)
T ss_pred HHHHHHHcCCCHHHHHHHHH-----HHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCCc
Confidence 975211 11111111111 112211 2233456677899999999999999999998 8899999999
Q ss_pred CCCce
Q psy850 213 SLQSI 217 (280)
Q Consensus 213 ~l~~i 217 (280)
++|+.
T Consensus 165 gLD~~ 169 (303)
T TIGR01288 165 GLDPH 169 (303)
T ss_pred CCCHH
Confidence 99874
No 120
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-31 Score=241.76 Aligned_cols=133 Identities=29% Similarity=0.398 Sum_probs=107.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------eEEEEecCCCCCC-CcHHHHHHhC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------TCAYVSQEAWITN-DTLRHNILFG 139 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--------~ig~v~Q~~~l~~-~Tv~enI~~g 139 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .|+++|+.++
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 105 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLG 105 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhc
Confidence 479999999999999999999999999999999999999999999877 3799999987664 7999999875
Q ss_pred CCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 140 EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
... .....+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++||||||++++|..
T Consensus 106 ~~~---~~~~~~~-----~~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~p------~lllLDEPt~~LD~~ 167 (257)
T PRK11247 106 LKG---QWRDAAL-----QALAAV--GLADRANEWPAALSGGQKQRVALARALIHRP------GLLLLDEPLGALDAL 167 (257)
T ss_pred ccc---hHHHHHH-----HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCCCCCCHH
Confidence 321 1111111 111111 2233456678899999999999999999998 889999999999864
No 121
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=2e-31 Score=257.31 Aligned_cols=136 Identities=30% Similarity=0.379 Sum_probs=109.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCC-CCCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWI-TNDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l-~~~Tv~e 134 (280)
.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+ ++|++|++.+ ++.|+++
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e 96 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQ 96 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHH
Confidence 4799999999999999999999999999999999999999999999872 7999999865 5789999
Q ss_pred HHHhCCCCC-------hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 135 NILFGEPFE-------PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 135 nI~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
|+.+++... .....+.+ ...++.+ +.....++++.+|||||||||+|||||+++| ++|+|
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~~~~v-----~~~le~v--gl~~~~~~~~~~LSgGerQRv~IArAL~~~P------~iLLL 163 (402)
T PRK09536 97 VVEMGRTPHRSRFDTWTETDRAAV-----ERAMERT--GVAQFADRPVTSLSGGERQRVLLARALAQAT------PVLLL 163 (402)
T ss_pred HHHhccchhcccccCCCHHHHHHH-----HHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEE
Confidence 999875311 01111111 1112221 2233456678899999999999999999998 88999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
|||++++|..
T Consensus 164 DEPtsgLD~~ 173 (402)
T PRK09536 164 DEPTASLDIN 173 (402)
T ss_pred ECCcccCCHH
Confidence 9999999874
No 122
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.97 E-value=2e-31 Score=238.56 Aligned_cols=138 Identities=25% Similarity=0.380 Sum_probs=108.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCC-CCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWI-TNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l-~~~Tv~en 135 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+ +..|+++|
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 94 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQN 94 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHH
Confidence 4799999999999999999999999999999999999999999999873 7899999866 46799999
Q ss_pred HHhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+.+..... .......+ ...+..+ +....+++++.+||||||||++|||||+.+| ++|+||||++
T Consensus 95 l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p------~llllDEP~~ 161 (236)
T TIGR03864 95 LRYHAALHGLSRAEARERI-----AALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP------ALLLLDEPTV 161 (236)
T ss_pred HHHHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCcc
Confidence 97643211 11111111 1112222 2334456778899999999999999999998 8899999999
Q ss_pred CCCceEE
Q psy850 213 SLQSILL 219 (280)
Q Consensus 213 ~l~~ill 219 (280)
++|..-.
T Consensus 162 ~LD~~~~ 168 (236)
T TIGR03864 162 GLDPASR 168 (236)
T ss_pred CCCHHHH
Confidence 9987533
No 123
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=4.2e-31 Score=231.87 Aligned_cols=136 Identities=27% Similarity=0.393 Sum_probs=108.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+++.|+++|
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~ 101 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN 101 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence 369999999999999999999999999999999999999999999987 2799999998888899999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+.+........ ... .+. +++++.+||||||||++|||||+.+| ++||||||++++|
T Consensus 102 l~~~~~~~~~~---~~~------~l~---------~~~~~~~LS~G~~qrv~laral~~~p------~llllDEP~~~LD 157 (207)
T cd03369 102 LDPFDEYSDEE---IYG------ALR---------VSEGGLNLSQGQRQLLCLARALLKRP------RVLVLDEATASID 157 (207)
T ss_pred hcccCCCCHHH---HHH------Hhh---------ccCCCCcCCHHHHHHHHHHHHHhhCC------CEEEEeCCcccCC
Confidence 97643221111 110 111 24567889999999999999999998 8899999999998
Q ss_pred ceEEEeehhhhhc
Q psy850 216 SILLMEEVNVYVS 228 (280)
Q Consensus 216 ~illlDE~~~~~~ 228 (280)
..-.-.-.+++.+
T Consensus 158 ~~~~~~l~~~l~~ 170 (207)
T cd03369 158 YATDALIQKTIRE 170 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 8543333344433
No 124
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-31 Score=242.24 Aligned_cols=137 Identities=29% Similarity=0.386 Sum_probs=107.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------EEEEecCCCCCC-CcHHHHHHhC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------CAYVSQEAWITN-DTLRHNILFG 139 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------ig~v~Q~~~l~~-~Tv~enI~~g 139 (280)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++ .|+.+|+.++
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 94 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFG 94 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhH
Confidence 4799999999999999999999999999999999999999999999873 799999987664 6999999875
Q ss_pred CCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 140 EPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 140 ~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
... ........+ ...+..+ +......+++.+|||||||||+|||||+.+| ++||||||++++|.
T Consensus 95 ~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~p------~lllLDEPt~~LD~ 161 (255)
T PRK11248 95 LQLAGVEKMQRLEIA-----HQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAANP------QLLLLDEPFGALDA 161 (255)
T ss_pred HHHcCCCHHHHHHHH-----HHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCCccCCH
Confidence 311 111111111 1122222 2233445678899999999999999999998 88999999999987
Q ss_pred eE
Q psy850 217 IL 218 (280)
Q Consensus 217 il 218 (280)
-.
T Consensus 162 ~~ 163 (255)
T PRK11248 162 FT 163 (255)
T ss_pred HH
Confidence 43
No 125
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.97 E-value=2.4e-31 Score=239.51 Aligned_cols=137 Identities=27% Similarity=0.363 Sum_probs=107.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEECCe---------------EEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST-----AGKLSREGT---------------CAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~-----~G~I~i~G~---------------ig~v~Q~~~l~ 128 (280)
.+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|. ++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 3799999999999999999999999999999999999998 999998762 78999998777
Q ss_pred CCcHHHHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCCCCCc----hhhccCCCCCCHHHHHHHHHHHHHhcCCchhh
Q psy850 129 NDTLRHNILFGEPFE----PQRYYKTLYNCALNTDIHILPGGDQ----TEIGERGINLSGGQKQRVALARALYSNSFEQQ 200 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~~g~~----~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~ 200 (280)
+.|+++|+.++.... .......+. ..+..+ +.. ..+++++.+|||||||||+|||||+.+|
T Consensus 95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p---- 163 (247)
T TIGR00972 95 PMSIYDNIAYGPRLHGIKDKKELDEIVE-----ESLKKA--ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEP---- 163 (247)
T ss_pred CCCHHHHHHhHHHhcCCCCHHHHHHHHH-----HHHHHc--CCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCC----
Confidence 799999998743211 111111111 111111 111 3456778899999999999999999998
Q ss_pred hhhhhhhccccCCCCceE
Q psy850 201 TFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~il 218 (280)
++|+||||++++|..-
T Consensus 164 --~llllDEPt~~LD~~~ 179 (247)
T TIGR00972 164 --EVLLLDEPTSALDPIA 179 (247)
T ss_pred --CEEEEeCCcccCCHHH
Confidence 8899999999998643
No 126
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=3.1e-31 Score=235.07 Aligned_cols=137 Identities=26% Similarity=0.348 Sum_probs=107.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCC-CCCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWI-TNDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l-~~~T 131 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+ +..|
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT 95 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence 4799999999999999999999999999999999999999999998862 6899999865 4679
Q ss_pred HHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
+++|+.++... ........+. ..+..+ +......+++.+|||||||||+|||||+.+| ++|+||
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~llllD 162 (222)
T PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVS-----AALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAVVNKP------AVLLAD 162 (222)
T ss_pred HHHHHHhHHHhcCCCHHHHHHHHH-----HHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHHHcCC------CEEEEe
Confidence 99999875321 1111111111 111211 2223345677899999999999999999998 889999
Q ss_pred cccCCCCceE
Q psy850 209 CPCVSLQSIL 218 (280)
Q Consensus 209 ep~~~l~~il 218 (280)
||++++|..-
T Consensus 163 EPt~~LD~~~ 172 (222)
T PRK10908 163 EPTGNLDDAL 172 (222)
T ss_pred CCCCcCCHHH
Confidence 9999998743
No 127
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.7e-31 Score=244.41 Aligned_cols=136 Identities=28% Similarity=0.369 Sum_probs=108.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCC--CCCCCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEA--WITNDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~--~l~~~Tv~ 133 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++ .++..|+.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 100 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ 100 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence 4799999999999999999999999999999999999999999999883 79999997 45678999
Q ss_pred HHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
+|+.++... ......+.+ ...+..+ +....+..++.+|||||||||+|||||+.+| ++||||||
T Consensus 101 enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~~~p------~lllLDEP 167 (279)
T PRK13635 101 DDVAFGLENIGVPREEMVERV-----DQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLALQP------DIIILDEA 167 (279)
T ss_pred HHHhhhHhhCCCCHHHHHHHH-----HHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHcCC------CEEEEeCC
Confidence 999875321 111111111 1111111 2334456778899999999999999999998 88999999
Q ss_pred cCCCCce
Q psy850 211 CVSLQSI 217 (280)
Q Consensus 211 ~~~l~~i 217 (280)
++++|..
T Consensus 168 t~gLD~~ 174 (279)
T PRK13635 168 TSMLDPR 174 (279)
T ss_pred cccCCHH
Confidence 9999764
No 128
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=1.4e-31 Score=291.58 Aligned_cols=142 Identities=27% Similarity=0.386 Sum_probs=122.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC-C-------------eEEEEecCCCCCCCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE-G-------------TCAYVSQEAWITNDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~-G-------------~ig~v~Q~~~l~~~Tv~e 134 (280)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ | +++||+|++.+|+.|++|
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e 478 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN 478 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence 47999999999999999999999999999999999999999999994 3 279999999999999999
Q ss_pred HHHhCCCC----------------------------------------------------------ChhhHHHHHHHhhh
Q psy850 135 NILFGEPF----------------------------------------------------------EPQRYYKTLYNCAL 156 (280)
Q Consensus 135 nI~~g~~~----------------------------------------------------------~~~~~~~~~~~~~l 156 (280)
||.++... ..++..+.++.+.+
T Consensus 479 NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l 558 (1466)
T PTZ00265 479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI 558 (1466)
T ss_pred HHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCc
Confidence 99997420 01122333334445
Q ss_pred hhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 157 NTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 157 ~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
...+..+|.+..|.+++++.+|||||||||+|||||+++| ++|||||||+++|.
T Consensus 559 ~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P------~ILlLDEpTSaLD~ 612 (1466)
T PTZ00265 559 HDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNP------KILILDEATSSLDN 612 (1466)
T ss_pred HHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCC------CEEEEeCcccccCH
Confidence 5566778999999999999999999999999999999998 88999999999976
No 129
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3e-31 Score=239.80 Aligned_cols=140 Identities=23% Similarity=0.313 Sum_probs=107.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECCe---------------EEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREGT---------------CAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G~---------------ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|. ++|++|++.++
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 369999999999999999999999999999999999987 4899998762 78999998777
Q ss_pred CCcHHHHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPFE----PQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
..|+++|+.++.... .......+.. .+..+. .......+.++.+|||||||||+|||||+.+|
T Consensus 101 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~-----~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p------ 169 (254)
T PRK14273 101 LMSIYDNISYGPKIHGTKDKKKLDEIVEQ-----SLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEP------ 169 (254)
T ss_pred cCcHHHHHHHHHHhcCCCCHHHHHHHHHH-----HHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCC------
Confidence 789999998753211 1111111111 111110 00122346678899999999999999999998
Q ss_pred hhhhhccccCCCCceEE
Q psy850 203 HFLVLLCPCVSLQSILL 219 (280)
Q Consensus 203 ~ll~ldep~~~l~~ill 219 (280)
++||||||++++|..-.
T Consensus 170 ~lllLDEPt~~LD~~~~ 186 (254)
T PRK14273 170 NVILMDEPTSALDPIST 186 (254)
T ss_pred CEEEEeCCCcccCHHHH
Confidence 88999999999987543
No 130
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-31 Score=241.76 Aligned_cols=144 Identities=24% Similarity=0.306 Sum_probs=106.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++| .++|++|++.++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 114 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPF 114 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccC
Confidence 47999999999999999999999999999999999864 6899998875 278999999887
Q ss_pred CCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 129 NDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
+.|+++|+.++.............. .....+..+. .......++++.+||||||||++|||||+.+| ++||
T Consensus 115 ~~tv~enl~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p------~lll 187 (268)
T PRK14248 115 PKSIYNNITHALKYAGERRKSVLDE-IVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKP------AVLL 187 (268)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCC------CEEE
Confidence 7799999987532111000000000 0011111110 01123456778899999999999999999998 8899
Q ss_pred hccccCCCCceEE
Q psy850 207 LLCPCVSLQSILL 219 (280)
Q Consensus 207 ldep~~~l~~ill 219 (280)
||||++++|..-.
T Consensus 188 LDEPt~~LD~~~~ 200 (268)
T PRK14248 188 LDEPASALDPISN 200 (268)
T ss_pred EcCCCcccCHHHH
Confidence 9999999986433
No 131
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3e-31 Score=245.39 Aligned_cols=137 Identities=31% Similarity=0.379 Sum_probs=108.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCC--CCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEA--WITN 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~--~l~~ 129 (280)
.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|+||++ .+++
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 4799999999999999999999999999999999999999999999873 68999987 4667
Q ss_pred CcHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 130 DTLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 130 ~Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
.|+++|+.++.. .......+.+. ..+..+ +.. ...++++.+|||||||||+|||||+.+| ++|
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P------~ll 167 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAR-----EMIELV--GLPEELLARSPFELSGGQMRRVAIAGVLAMEP------EVL 167 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHC--CCChhhhhCCcccCCHHHHHHHHHHHHHHcCC------CEE
Confidence 899999987632 11111111111 112222 222 2245678899999999999999999998 889
Q ss_pred hhccccCCCCceE
Q psy850 206 VLLCPCVSLQSIL 218 (280)
Q Consensus 206 ~ldep~~~l~~il 218 (280)
|||||++++|+.-
T Consensus 168 llDEPt~~LD~~~ 180 (290)
T PRK13634 168 VLDEPTAGLDPKG 180 (290)
T ss_pred EEECCcccCCHHH
Confidence 9999999998743
No 132
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.2e-31 Score=238.05 Aligned_cols=148 Identities=26% Similarity=0.350 Sum_probs=112.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCCC-CC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWIT-ND 130 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l~-~~ 130 (280)
+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 35799999999999999999999999999999999999999999998862 78999998666 47
Q ss_pred cHHHHHHhCCCCC-----------hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchh
Q psy850 131 TLRHNILFGEPFE-----------PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQ 199 (280)
Q Consensus 131 Tv~enI~~g~~~~-----------~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~ 199 (280)
|+++|+.++.... .......+ ...+..+ +.....++++.+|||||||||+|||||+.+|
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--- 163 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRA-----LAALERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQP--- 163 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHH-----HHHHHHc--CChhhhCCCcccCCHHHHHHHHHHHHHhcCC---
Confidence 9999998753210 00001111 1112222 2233456678899999999999999999998
Q ss_pred hhhhhhhhccccCCCCceEEEeehhhhhc
Q psy850 200 QTFHFLVLLCPCVSLQSILLMEEVNVYVS 228 (280)
Q Consensus 200 ~~~~ll~ldep~~~l~~illlDE~~~~~~ 228 (280)
++||||||++++|..-...-.+++..
T Consensus 164 ---~llllDEPt~~LD~~~~~~l~~~l~~ 189 (241)
T cd03256 164 ---KLILADEPVASLDPASSRQVMDLLKR 189 (241)
T ss_pred ---CEEEEeCccccCCHHHHHHHHHHHHH
Confidence 88999999999987544433444443
No 133
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.9e-31 Score=239.54 Aligned_cols=140 Identities=23% Similarity=0.329 Sum_probs=105.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 37999999999999999999999999999999999974 5899999876 279999998777
Q ss_pred CCcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+.|+++|+.++... ........+.. .+..+. ......+++++.+|||||||||+|||||+.+|
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~-----~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p------ 168 (253)
T PRK14242 100 PKSIFENVAYGLRVNGVKDKAYLAERVER-----SLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEP------ 168 (253)
T ss_pred cCcHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 77999999875311 11111111111 111110 00112346678899999999999999999998
Q ss_pred hhhhhccccCCCCceEE
Q psy850 203 HFLVLLCPCVSLQSILL 219 (280)
Q Consensus 203 ~ll~ldep~~~l~~ill 219 (280)
++|+||||++++|..-.
T Consensus 169 ~llllDEPt~~LD~~~~ 185 (253)
T PRK14242 169 EVLLMDEPASALDPIAT 185 (253)
T ss_pred CEEEEeCCcccCCHHHH
Confidence 88999999999987533
No 134
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.7e-31 Score=234.72 Aligned_cols=135 Identities=21% Similarity=0.305 Sum_probs=105.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------eEEEEecCCCCCC-CcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------TCAYVSQEAWITN-DTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------~ig~v~Q~~~l~~-~Tv~en 135 (280)
.+++++||+|++| +++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .|+.+|
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF 92 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence 4799999999999 9999999999999999999999999999999987 2799999987764 599999
Q ss_pred HHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+.+.... ......+.+. ..+..+ +.....+.++.+|||||||||+|||||+.+| ++|+||||++
T Consensus 93 l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p------~llllDEPt~ 159 (211)
T cd03264 93 LDYIAWLKGIPSKEVKARVD-----EVLELV--NLGDRAKKKIGSLSGGMRRRVGIAQALVGDP------SILIVDEPTA 159 (211)
T ss_pred HHHHHHHhCCCHHHHHHHHH-----HHHHHC--CCHHHHhCchhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCcc
Confidence 9763211 1111111111 111111 2223345677889999999999999999998 8899999999
Q ss_pred CCCce
Q psy850 213 SLQSI 217 (280)
Q Consensus 213 ~l~~i 217 (280)
++|..
T Consensus 160 ~LD~~ 164 (211)
T cd03264 160 GLDPE 164 (211)
T ss_pred cCCHH
Confidence 99874
No 135
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.1e-31 Score=243.87 Aligned_cols=136 Identities=27% Similarity=0.364 Sum_probs=107.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCC--CCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEA--WITN 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~--~l~~ 129 (280)
.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+||++ .++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 479999999999999999999999999999999999999999999987 269999986 4666
Q ss_pred CcHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 130 DTLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 130 ~Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
.|+.+|+.++.. .........+. ..+..+ +.. ...++++.+|||||||||+|||||+.+| ++|
T Consensus 101 ~tv~e~i~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p------~il 167 (286)
T PRK13646 101 DTVEREIIFGPKNFKMNLDEVKNYAH-----RLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNP------DII 167 (286)
T ss_pred hhHHHHHHhhHHHcCCCHHHHHHHHH-----HHHHHc--CCChhhhhCCcccCCHHHHHHHHHHHHHHhCC------CEE
Confidence 799999988632 11111111111 112222 333 2345678899999999999999999998 889
Q ss_pred hhccccCCCCce
Q psy850 206 VLLCPCVSLQSI 217 (280)
Q Consensus 206 ~ldep~~~l~~i 217 (280)
|||||++++|..
T Consensus 168 llDEPt~~LD~~ 179 (286)
T PRK13646 168 VLDEPTAGLDPQ 179 (286)
T ss_pred EEECCcccCCHH
Confidence 999999999763
No 136
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.5e-31 Score=236.78 Aligned_cols=135 Identities=29% Similarity=0.393 Sum_probs=107.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++..|+++|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDN 96 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHH
Confidence 4799999999999999999999999999999999999999999999872 789999988777899999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++....... ...+ ...+..+ +.. ....+++.+||||||||++|||||+.+| ++||||||++++
T Consensus 97 l~~~~~~~~~~-~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p------~llllDEPt~~L 162 (241)
T PRK14250 97 IEYGPMLKGEK-NVDV-----EYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP------EVLLLDEPTSAL 162 (241)
T ss_pred HhcchhhcCcH-HHHH-----HHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccC
Confidence 98753221110 0111 1111111 121 2345678899999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 163 D~~ 165 (241)
T PRK14250 163 DPT 165 (241)
T ss_pred CHH
Confidence 874
No 137
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.5e-31 Score=240.44 Aligned_cols=151 Identities=23% Similarity=0.329 Sum_probs=111.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++.++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 106 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPF 106 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccc
Confidence 47999999999999999999999999999999999987 6899999876 278999998877
Q ss_pred CCcHHHHHHhCCCCCh--hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 129 NDTLRHNILFGEPFEP--QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~~--~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
..|+++|+.++..... ....+.+... ...+.. ........++++.+|||||||||+|||||+.+| ++||
T Consensus 107 ~~tv~enl~~~~~~~~~~~~~~~~~~~~--l~~~~l-~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p------~lll 177 (269)
T PRK14259 107 PKSIYENIAFGARINGYTGDMDELVERS--LRKAAV-WDECKDKLNESGYSLSGGQQQRLCIARTIAIEP------EVIL 177 (269)
T ss_pred hhhHHHHHhhhhhhcCCcHHHHHHHHHH--HHHhCC-cchhhhhhCCCcccCCHHHHHHHHHHHHHhcCC------CEEE
Confidence 6799999987643211 1111111111 011110 001123456677899999999999999999998 8899
Q ss_pred hccccCCCCceEEEeehhhhhc
Q psy850 207 LLCPCVSLQSILLMEEVNVYVS 228 (280)
Q Consensus 207 ldep~~~l~~illlDE~~~~~~ 228 (280)
||||++++|..-...-.+++..
T Consensus 178 LDEPt~gLD~~~~~~l~~~l~~ 199 (269)
T PRK14259 178 MDEPCSALDPISTLKIEETMHE 199 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHH
Confidence 9999999987544433444433
No 138
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=4.4e-31 Score=249.96 Aligned_cols=141 Identities=26% Similarity=0.358 Sum_probs=109.7
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCCC-CCcHH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWIT-NDTLR 133 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l~-~~Tv~ 133 (280)
++.+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+||++.++ ..|+.
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 132 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVR 132 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHH
Confidence 345899999999999999999999999999999999999999999999873 79999998765 67999
Q ss_pred HHHHhCCC-C--ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEP-F--EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~-~--~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
+|+.+... + .......... ..+..+ +.....+++..+|||||||||+|||||+++| ++||||||
T Consensus 133 e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P------~lLiLDEP 199 (340)
T PRK13536 133 ENLLVFGRYFGMSTREIEAVIP-----SLLEFA--RLESKADARVSDLSGGMKRRLTLARALINDP------QLLILDEP 199 (340)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhcCC------CEEEEECC
Confidence 99975221 1 1111111111 111111 2233456677889999999999999999998 88999999
Q ss_pred cCCCCceEEE
Q psy850 211 CVSLQSILLM 220 (280)
Q Consensus 211 ~~~l~~illl 220 (280)
++++|+.-.-
T Consensus 200 t~gLD~~~r~ 209 (340)
T PRK13536 200 TTGLDPHARH 209 (340)
T ss_pred CCCCCHHHHH
Confidence 9999875433
No 139
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.97 E-value=1.8e-31 Score=247.99 Aligned_cols=137 Identities=22% Similarity=0.267 Sum_probs=108.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCCC-CCcHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l~-~~Tv~e 134 (280)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|+++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 46899999999999999999999999999999999999999999999872 79999998766 569999
Q ss_pred HHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 135 NILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 135 nI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
|+.+.... ........+ ...+..+ +.....++++.+|||||||||+|||||+++| ++|+|||||
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p------~lllLDEPt 152 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERA-----EELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQP------DVLFLDEPT 152 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCC
Confidence 99864211 111111111 1122222 2233456678899999999999999999998 889999999
Q ss_pred CCCCce
Q psy850 212 VSLQSI 217 (280)
Q Consensus 212 ~~l~~i 217 (280)
+++|+.
T Consensus 153 ~gLD~~ 158 (302)
T TIGR01188 153 TGLDPR 158 (302)
T ss_pred cCCCHH
Confidence 999764
No 140
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=3.7e-31 Score=289.07 Aligned_cols=142 Identities=31% Similarity=0.464 Sum_probs=131.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
++|+||||+|++||.+||||++|||||||+++|+|+++ .+|+|.++| +++||||+|.+|++|+++|
T Consensus 1233 ~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1233 AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 58999999999999999999999999999999999997 799999998 3799999999999999999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
|.....+..++..++++.+.+...+..+|.++++.+++.+.+||||||||++|||||+++| ++|||||||+++|
T Consensus 1312 Ldp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~------~ILlLDEaTS~lD 1385 (1490)
T TIGR01271 1312 LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA------KILLLDEPSAHLD 1385 (1490)
T ss_pred hCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC------CEEEEeCCcccCC
Confidence 9765556677888888888888888889999999999999999999999999999999998 7899999999997
Q ss_pred ce
Q psy850 216 SI 217 (280)
Q Consensus 216 ~i 217 (280)
.-
T Consensus 1386 ~~ 1387 (1490)
T TIGR01271 1386 PV 1387 (1490)
T ss_pred HH
Confidence 63
No 141
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.97 E-value=4.8e-31 Score=234.50 Aligned_cols=138 Identities=24% Similarity=0.299 Sum_probs=107.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCCCCCC-C
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEAWITN-D 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~~l~~-~ 130 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 379999999999999999999999999999999999999999999876 2789999987664 6
Q ss_pred cHHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 131 TLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 131 Tv~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
|+.+|+.++... ......+.+ ...+..+ +......+++.+||||||||++|||||+.+| ++|||
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p------~llll 170 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGA-----KALLEQL--GLGKRLDHLPAQLSGGEQQRVALARAFNGRP------DVLFA 170 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEE
Confidence 999999764211 111111111 1112222 2223445677899999999999999999998 88999
Q ss_pred ccccCCCCceEE
Q psy850 208 LCPCVSLQSILL 219 (280)
Q Consensus 208 dep~~~l~~ill 219 (280)
|||++++|..-.
T Consensus 171 DEPt~~LD~~~~ 182 (228)
T PRK10584 171 DEPTGNLDRQTG 182 (228)
T ss_pred eCCCCCCCHHHH
Confidence 999999987433
No 142
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.5e-31 Score=245.24 Aligned_cols=136 Identities=28% Similarity=0.370 Sum_probs=107.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------------------------------
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------------------------- 116 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------------------------- 116 (280)
.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 479999999999999999999999999999999999999999998853
Q ss_pred -----eEEEEecCC--CCCCCcHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHH
Q psy850 117 -----TCAYVSQEA--WITNDTLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQR 185 (280)
Q Consensus 117 -----~ig~v~Q~~--~l~~~Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQR 185 (280)
.+|||||++ .++..||++||.|+.. ...+...+.+. ..+..+ +.. ...++++.+||||||||
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~~LSgGqkqr 173 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAA-----KYIELV--GLDESYLQRSPFELSGGQKRR 173 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHH-----HHHHHc--CCChhhhhCChhhCCHHHHHH
Confidence 269999986 4667799999988642 11111111111 112221 222 34567788999999999
Q ss_pred HHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 186 VALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 186 V~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
|+|||||+.+| ++||||||++++|+.
T Consensus 174 valA~aL~~~P------~lLlLDEPt~~LD~~ 199 (305)
T PRK13651 174 VALAGILAMEP------DFLVFDEPTAGLDPQ 199 (305)
T ss_pred HHHHHHHHhCC------CEEEEeCCCCCCCHH
Confidence 99999999998 889999999999764
No 143
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=2.7e-31 Score=290.90 Aligned_cols=144 Identities=44% Similarity=0.679 Sum_probs=133.6
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhh
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQR 146 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~ 146 (280)
++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.++++|++|++|+++.|++|||.++...+.++
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~ 751 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAAR 751 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999987655556
Q ss_pred HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 147 YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 147 ~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+.+.+..|.+..++..++.++.+.+++++.+|||||||||+|||||+.+| ++++||||++++|.
T Consensus 752 ~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p------~illLDEP~saLD~ 815 (1560)
T PTZ00243 752 LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANR------DVYLLDDPLSALDA 815 (1560)
T ss_pred HHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCC------CEEEEcCccccCCH
Confidence 66777778888889999999999999999999999999999999999998 78899999999985
No 144
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.2e-31 Score=238.96 Aligned_cols=139 Identities=26% Similarity=0.365 Sum_probs=107.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 37999999999999999999999999999999999986 5899998876 278999998777
Q ss_pred CCcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+.|+++|+.++... ......+.+. ..+..+. ......+++++.+||||||||++|||||+.+|
T Consensus 107 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p------ 175 (260)
T PRK10744 107 PMSIYDNIAFGVRLFEKLSRAEMDERVE-----WALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRP------ 175 (260)
T ss_pred cCcHHHHHhhhHhhcCCCCHHHHHHHHH-----HHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCC------
Confidence 78999999875321 1111111111 1111111 01123456778899999999999999999998
Q ss_pred hhhhhccccCCCCceE
Q psy850 203 HFLVLLCPCVSLQSIL 218 (280)
Q Consensus 203 ~ll~ldep~~~l~~il 218 (280)
++||||||++++|..-
T Consensus 176 ~lllLDEPt~~LD~~~ 191 (260)
T PRK10744 176 EVLLLDEPCSALDPIS 191 (260)
T ss_pred CEEEEcCCCccCCHHH
Confidence 8899999999998743
No 145
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.2e-31 Score=242.63 Aligned_cols=136 Identities=29% Similarity=0.367 Sum_probs=107.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCC--CCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEA--WITN 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~--~l~~ 129 (280)
.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++||+|++ .++.
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 3799999999999999999999999999999999999999999999872 68999987 5677
Q ss_pred CcHHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 130 DTLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 130 ~Tv~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
.|+.+|+.|+... ........+ ...+..+ +.. ...++.+.+||||||||++|||||+.+| ++|
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p------~il 166 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIA-----AEKLEMV--GLADEFWEKSPFELSGGQMRRVAIAGILAMEP------EVL 166 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhccCCcccCCHHHHHHHHHHHHHHhCC------CEE
Confidence 8999999886421 111111111 1112211 121 2345778899999999999999999998 889
Q ss_pred hhccccCCCCce
Q psy850 206 VLLCPCVSLQSI 217 (280)
Q Consensus 206 ~ldep~~~l~~i 217 (280)
|||||++++|..
T Consensus 167 lLDEPt~gLD~~ 178 (288)
T PRK13643 167 VLDEPTAGLDPK 178 (288)
T ss_pred EEECCccCCCHH
Confidence 999999999763
No 146
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=2.7e-31 Score=232.24 Aligned_cols=139 Identities=29% Similarity=0.382 Sum_probs=107.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCCCCCC-
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEAWITN- 129 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~~l~~- 129 (280)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN 90 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence 45899999999999999999999999999999999999999999988762 689999987764
Q ss_pred CcHHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 130 DTLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 130 ~Tv~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
.|+++|+.++... ......+.+. ..+..+ +.....++++.+||||||||++|||||+.+| ++||
T Consensus 91 ~t~~e~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~~~p------~lll 157 (206)
T TIGR03608 91 ETVEENLDLGLKYKKLSKKEKREKKK-----EALEKV--GLNLKLKQKIYELSGGEQQRVALARAILKDP------PLIL 157 (206)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHc--CchhhhcCChhhCCHHHHHHHHHHHHHHcCC------CEEE
Confidence 7999999874321 1111111111 112211 2233445677889999999999999999998 8889
Q ss_pred hccccCCCCceEE
Q psy850 207 LLCPCVSLQSILL 219 (280)
Q Consensus 207 ldep~~~l~~ill 219 (280)
||||++++|..-.
T Consensus 158 lDEPt~~LD~~~~ 170 (206)
T TIGR03608 158 ADEPTGSLDPKNR 170 (206)
T ss_pred EeCCcCCCCHHHH
Confidence 9999999976433
No 147
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.8e-31 Score=237.57 Aligned_cols=136 Identities=26% Similarity=0.374 Sum_probs=106.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCC-CCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~-~~Tv~e 134 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|+++
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence 4799999999999999999999999999999999999999999999872 68999998776 579999
Q ss_pred HHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCc--hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 135 NILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQ--TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 135 nI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~--~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
|+.++... ........+ ...+..+ +.. ....+++.+|||||||||+|||||+.+| ++|+|||
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~-----~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p------~llllDE 161 (242)
T cd03295 95 NIALVPKLLKWPKEKIRERA-----DELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAADP------PLLLMDE 161 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC------CEEEecC
Confidence 99875321 111111111 1122222 122 2346677899999999999999999998 8899999
Q ss_pred ccCCCCce
Q psy850 210 PCVSLQSI 217 (280)
Q Consensus 210 p~~~l~~i 217 (280)
|++++|..
T Consensus 162 Pt~~LD~~ 169 (242)
T cd03295 162 PFGALDPI 169 (242)
T ss_pred CcccCCHH
Confidence 99999764
No 148
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.4e-31 Score=236.59 Aligned_cols=143 Identities=19% Similarity=0.261 Sum_probs=109.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCCC-CcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWITN-DTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~~-~Tv~ 133 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++. .|++
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (255)
T PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVI 98 (255)
T ss_pred EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHH
Confidence 4799999999999999999999999999999999999999999999873 678999987764 6999
Q ss_pred HHHHhCCCCCh------h-----hHH--HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhh
Q psy850 134 HNILFGEPFEP------Q-----RYY--KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQ 200 (280)
Q Consensus 134 enI~~g~~~~~------~-----~~~--~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~ 200 (280)
+|+.++..... . ... ...........+..+ +.....++++.+|||||||||+|||||+.+|
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p---- 172 (255)
T PRK11300 99 ENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQRRLEIARCMVTQP---- 172 (255)
T ss_pred HHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHHHHHHHHHHhcCC----
Confidence 99987532100 0 000 000000111112222 3334567788899999999999999999998
Q ss_pred hhhhhhhccccCCCCceEE
Q psy850 201 TFHFLVLLCPCVSLQSILL 219 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~ill 219 (280)
++||||||++++|..-.
T Consensus 173 --~llllDEPt~~LD~~~~ 189 (255)
T PRK11300 173 --EILMLDEPAAGLNPKET 189 (255)
T ss_pred --CEEEEcCCccCCCHHHH
Confidence 88999999999987543
No 149
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.9e-31 Score=240.79 Aligned_cols=136 Identities=27% Similarity=0.398 Sum_probs=107.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCC--CCCCCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEA--WITNDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~--~l~~~Tv~ 133 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++ .++..|++
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 102 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVE 102 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHH
Confidence 4799999999999999999999999999999999999999999998872 79999997 45577999
Q ss_pred HHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
+|+.++.. .........+ ...+..+ +.....++++.+||||||||++|||||+.+| ++|+||||
T Consensus 103 enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~p------~lllLDEP 169 (271)
T PRK13632 103 DDIAFGLENKKVPPKKMKDII-----DDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLALNP------EIIIFDES 169 (271)
T ss_pred HHHHhHHHHcCCCHHHHHHHH-----HHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHHcCC------CEEEEeCC
Confidence 99987532 1111111111 1112222 2334456778899999999999999999998 88999999
Q ss_pred cCCCCce
Q psy850 211 CVSLQSI 217 (280)
Q Consensus 211 ~~~l~~i 217 (280)
++++|..
T Consensus 170 ~~gLD~~ 176 (271)
T PRK13632 170 TSMLDPK 176 (271)
T ss_pred cccCCHH
Confidence 9999764
No 150
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1e-31 Score=234.74 Aligned_cols=138 Identities=26% Similarity=0.319 Sum_probs=110.4
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------EEEEecCCCC-CCCcHHHHHHh
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------CAYVSQEAWI-TNDTLRHNILF 138 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------ig~v~Q~~~l-~~~Tv~enI~~ 138 (280)
..+|+|+|++|.+||+++++|||||||||||++++|+++|..|+|.++|+ .|.|||++.+ +..++.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999986 5899999755 57799999999
Q ss_pred CCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 139 GEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 139 g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
|.... +.............. ++...-.+++.+|||||||||.|||||+.+| ++|+||||++++|
T Consensus 98 gL~l~Gi~k~~R~~~a~q~l~~V-------gL~~~~~~~i~qLSGGmrQRvGiARALa~eP------~~LlLDEPfgAlD 164 (259)
T COG4525 98 GLQLRGIEKAQRREIAHQMLALV-------GLEGAEHKYIWQLSGGMRQRVGIARALAVEP------QLLLLDEPFGALD 164 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHh-------CcccccccceEeecchHHHHHHHHHHhhcCc------ceEeecCchhhHH
Confidence 86432 111111111111111 2222235778899999999999999999998 8999999999998
Q ss_pred ceE
Q psy850 216 SIL 218 (280)
Q Consensus 216 ~il 218 (280)
...
T Consensus 165 a~t 167 (259)
T COG4525 165 ALT 167 (259)
T ss_pred HHH
Confidence 754
No 151
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=4.5e-31 Score=234.93 Aligned_cols=147 Identities=31% Similarity=0.422 Sum_probs=110.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------------eEEEEecCCCCCC-CcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------------TCAYVSQEAWITN-DTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--------------~ig~v~Q~~~l~~-~Tv~ 133 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+++ .|+.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence 479999999999999999999999999999999999999999999986 2789999987764 5999
Q ss_pred HHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 134 HNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 134 enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
+|+.++.............. .+..+. +.....++++.+||||||||++|||||+.+| ++|+||||+++
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~-----~l~~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p------~illlDEPt~~ 161 (230)
T TIGR03410 94 ENLLTGLAALPRRSRKIPDE-----IYELFP-VLKEMLGRRGGDLSGGQQQQLAIARALVTRP------KLLLLDEPTEG 161 (230)
T ss_pred HHHHHHHHhcCcchHHHHHH-----HHHHHH-hHHHHhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEecCCccc
Confidence 99987532111110111111 111110 1122345677889999999999999999998 88999999999
Q ss_pred CCceEEEeehhhhh
Q psy850 214 LQSILLMEEVNVYV 227 (280)
Q Consensus 214 l~~illlDE~~~~~ 227 (280)
+|..-.-.-.+++.
T Consensus 162 LD~~~~~~l~~~l~ 175 (230)
T TIGR03410 162 IQPSIIKDIGRVIR 175 (230)
T ss_pred CCHHHHHHHHHHHH
Confidence 98754433333333
No 152
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=4.4e-31 Score=237.77 Aligned_cols=137 Identities=28% Similarity=0.306 Sum_probs=106.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC---------------------eEEEEecCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---------------------TCAYVSQEAWI 127 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G---------------------~ig~v~Q~~~l 127 (280)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 479999999999999999999999999999999999999999998765 26899999876
Q ss_pred C-CCcHHHHHHhCCC----CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 128 T-NDTLRHNILFGEP----FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 128 ~-~~Tv~enI~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+ ..|+.+|+.++.. .......+.+ ...+..+ +.....+.++.+|||||||||+|||||+.+|
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p------ 163 (250)
T PRK11264 97 FPHRTVLENIIEGPVIVKGEPKEEATARA-----RELLAKV--GLAGKETSYPRRLSGGQQQRVAIARALAMRP------ 163 (250)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCcchhhCChhhCChHHHHHHHHHHHHhcCC------
Confidence 6 5799999976421 1111111111 1112222 2233346678899999999999999999998
Q ss_pred hhhhhccccCCCCceE
Q psy850 203 HFLVLLCPCVSLQSIL 218 (280)
Q Consensus 203 ~ll~ldep~~~l~~il 218 (280)
++||||||++++|.--
T Consensus 164 ~lllLDEPt~~LD~~~ 179 (250)
T PRK11264 164 EVILFDEPTSALDPEL 179 (250)
T ss_pred CEEEEeCCCccCCHHH
Confidence 8899999999998743
No 153
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.6e-31 Score=242.22 Aligned_cols=137 Identities=26% Similarity=0.358 Sum_probs=107.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCC--CCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEA--WITN 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~--~l~~ 129 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++ .++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 100 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE 100 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence 4799999999999999999999999999999999999999999999873 68999997 4567
Q ss_pred CcHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 130 DTLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 130 ~Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
.|+++|+.++.. .........+ ...+..+ +.. ....+++.+|||||||||+|||||+.+| ++|
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~laral~~~p------~lL 167 (287)
T PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEKA-----LKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEP------EIL 167 (287)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhhCCcccCCHHHHHHHHHHHHHHcCC------CEE
Confidence 899999987531 1111111111 1112222 222 2346778899999999999999999998 889
Q ss_pred hhccccCCCCceE
Q psy850 206 VLLCPCVSLQSIL 218 (280)
Q Consensus 206 ~ldep~~~l~~il 218 (280)
|||||++++|..-
T Consensus 168 lLDEPt~gLD~~~ 180 (287)
T PRK13641 168 CLDEPAAGLDPEG 180 (287)
T ss_pred EEECCCCCCCHHH
Confidence 9999999998643
No 154
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=238.04 Aligned_cols=137 Identities=25% Similarity=0.291 Sum_probs=107.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCC-CCCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWI-TNDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l-~~~Tv~e 134 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+ +..|+.+
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE 104 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHH
Confidence 3799999999999999999999999999999999999999999999872 7999999654 4569999
Q ss_pred HHHhCCCCC-------hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 135 NILFGEPFE-------PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 135 nI~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
|+.++.... .......+ ...+..+ +....++.++.+|||||||||+|||||+.+| ++|||
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~p------~lllL 171 (265)
T PRK10575 105 LVAIGRYPWHGALGRFGAADREKV-----EEAISLV--GLKPLAHRLVDSLSGGERQRAWIAMLVAQDS------RCLLL 171 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHH-----HHHHHHc--CCHHHhcCCcccCCHHHHHHHHHHHHHhcCC------CEEEE
Confidence 998753210 00111111 1112222 2233456678899999999999999999998 88999
Q ss_pred ccccCCCCceE
Q psy850 208 LCPCVSLQSIL 218 (280)
Q Consensus 208 dep~~~l~~il 218 (280)
|||++++|..-
T Consensus 172 DEPt~~LD~~~ 182 (265)
T PRK10575 172 DEPTSALDIAH 182 (265)
T ss_pred cCCcccCCHHH
Confidence 99999998754
No 155
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=1.9e-31 Score=230.63 Aligned_cols=141 Identities=29% Similarity=0.334 Sum_probs=109.8
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHHHhCC
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNILFGE 140 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI~~g~ 140 (280)
..+++|+.||+++|+|||||||||||++|+|+..|.+|+|.++|. ++++||+..+| +.||.+||.+|.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl 96 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGL 96 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccC
Confidence 468899999999999999999999999999999999999999985 68999998887 789999999987
Q ss_pred CCCh---hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 141 PFEP---QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 141 ~~~~---~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.... ....+.+....... |.....++.|.+|||||||||+|||+|+++.+ +|+||||++++|+-
T Consensus 97 ~P~LkL~a~~r~~v~~aa~~v-------Gl~~~~~RLP~~LSGGqRQRvALARclvR~~P------ilLLDEPFsALdP~ 163 (231)
T COG3840 97 SPGLKLNAEQREKVEAAAAQV-------GLAGFLKRLPGELSGGQRQRVALARCLVREQP------ILLLDEPFSALDPA 163 (231)
T ss_pred CcccccCHHHHHHHHHHHHHh-------ChhhHhhhCccccCchHHHHHHHHHHHhccCC------eEEecCchhhcCHH
Confidence 5321 11111111111111 33444556788999999999999999999874 57999999999886
Q ss_pred EEEeehhhh
Q psy850 218 LLMEEVNVY 226 (280)
Q Consensus 218 lllDE~~~~ 226 (280)
|.-+-..+.
T Consensus 164 LR~eMl~Lv 172 (231)
T COG3840 164 LRAEMLALV 172 (231)
T ss_pred HHHHHHHHH
Confidence 654444333
No 156
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9e-31 Score=234.78 Aligned_cols=137 Identities=25% Similarity=0.391 Sum_probs=107.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------------eEEEEecCCCCCC-CcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------------TCAYVSQEAWITN-DTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--------------~ig~v~Q~~~l~~-~Tv~ 133 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .|+.
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVY 96 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHH
Confidence 479999999999999999999999999999999999999999999987 2799999987664 6999
Q ss_pred HHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 134 HNILFGEPFE----PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 134 enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
+|+.+..... .......+ ...+..+ +.....+.++.+|||||||||+|||||+.+| ++|+|||
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~llllDE 163 (241)
T PRK10895 97 DNLMAVLQIRDDLSAEQREDRA-----NELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAANP------KFILLDE 163 (241)
T ss_pred HHHhhhhhcccccCHHHHHHHH-----HHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhcCC------CEEEEcC
Confidence 9998753211 11111111 1122222 2333456677889999999999999999998 8899999
Q ss_pred ccCCCCceE
Q psy850 210 PCVSLQSIL 218 (280)
Q Consensus 210 p~~~l~~il 218 (280)
|++++|..-
T Consensus 164 Pt~~LD~~~ 172 (241)
T PRK10895 164 PFAGVDPIS 172 (241)
T ss_pred CcccCCHHH
Confidence 999998643
No 157
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.97 E-value=7.5e-31 Score=243.91 Aligned_cols=136 Identities=28% Similarity=0.378 Sum_probs=107.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------eEEEEecCCCCC-CCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------TCAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------~ig~v~Q~~~l~-~~Tv~en 135 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+||++.++ ..|+.||
T Consensus 16 ~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~ 95 (301)
T TIGR03522 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREY 95 (301)
T ss_pred EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHH
Confidence 479999999999999999999999999999999999999999999987 279999998776 5699999
Q ss_pred HHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+.+.... ......+.+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||++
T Consensus 96 l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p------~lliLDEPt~ 162 (301)
T TIGR03522 96 LQFIAGIYGMKGQLLKQRV-----EEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDP------KVLILDEPTT 162 (301)
T ss_pred HHHHHHHcCCCHHHHHHHH-----HHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCcc
Confidence 9763211 111111111 1122222 2334456778899999999999999999998 8899999999
Q ss_pred CCCce
Q psy850 213 SLQSI 217 (280)
Q Consensus 213 ~l~~i 217 (280)
++|+.
T Consensus 163 gLD~~ 167 (301)
T TIGR03522 163 GLDPN 167 (301)
T ss_pred cCCHH
Confidence 99764
No 158
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=7e-31 Score=225.81 Aligned_cols=105 Identities=32% Similarity=0.580 Sum_probs=96.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCCCCCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWITNDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l~~~Tv~enI 136 (280)
.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++.|+++|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i 95 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL 95 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh
Confidence 4799999999999999999999999999999999999999999999873 7899999888778998887
Q ss_pred HhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 137 LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 137 ~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+.+||||||||++|||||+.+| ++|+||||++++|.
T Consensus 96 --------------------------------------~~~LS~G~~qrv~laral~~~p------~~lllDEP~~~LD~ 131 (178)
T cd03247 96 --------------------------------------GRRFSGGERQRLALARILLQDA------PIVLLDEPTVGLDP 131 (178)
T ss_pred --------------------------------------cccCCHHHHHHHHHHHHHhcCC------CEEEEECCcccCCH
Confidence 3469999999999999999998 88999999999986
Q ss_pred e
Q psy850 217 I 217 (280)
Q Consensus 217 i 217 (280)
.
T Consensus 132 ~ 132 (178)
T cd03247 132 I 132 (178)
T ss_pred H
Confidence 4
No 159
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.6e-31 Score=235.71 Aligned_cols=139 Identities=26% Similarity=0.339 Sum_probs=106.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEECCe-------------EEEEecCCCCCCCcH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR---STAGKLSREGT-------------CAYVSQEAWITNDTL 132 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~---p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv 132 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|. ++|+||++.+++.|+
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv 95 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSI 95 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccH
Confidence 47999999999999999999999999999999999974 68999999873 799999998888899
Q ss_pred HHHHHhCCCCCh-----hhHHHHHHHhhhhhhHhhCCC--CCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 133 RHNILFGEPFEP-----QRYYKTLYNCALNTDIHILPG--GDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 133 ~enI~~g~~~~~-----~~~~~~~~~~~l~~~l~~l~~--g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
++|+.++..... ......+. ..++.+.. .......+++.+|||||||||+|||||+.+| ++|
T Consensus 96 ~eni~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p------~ll 164 (246)
T PRK14269 96 YENISYAPKLHGMIKNKDEEEALVV-----DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP------KLL 164 (246)
T ss_pred HHHhhhHHhhcCcccChHHHHHHHH-----HHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC------CEE
Confidence 999987532110 11111111 11111100 0012345677889999999999999999998 889
Q ss_pred hhccccCCCCceE
Q psy850 206 VLLCPCVSLQSIL 218 (280)
Q Consensus 206 ~ldep~~~l~~il 218 (280)
+||||++++|..-
T Consensus 165 lLDEP~~~LD~~~ 177 (246)
T PRK14269 165 LLDEPTSALDPIS 177 (246)
T ss_pred EEcCCcccCCHHH
Confidence 9999999998743
No 160
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.9e-31 Score=240.61 Aligned_cols=136 Identities=30% Similarity=0.340 Sum_probs=107.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCC--CCCCcH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAW--ITNDTL 132 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~--l~~~Tv 132 (280)
.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++. ++..|+
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 3799999999999999999999999999999999999999999998862 789999974 456799
Q ss_pred HHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 133 RHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 133 ~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
.+|+.++... ......+.+. ..+..+ +.....+.++..|||||||||+|||||+.+| ++|||||
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~~~p------~lllLDE 162 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVD-----RALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILTMEP------ECLIFDE 162 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHH-----HHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHHcCC------CEEEEeC
Confidence 9999875321 1111111111 112222 2334456678899999999999999999998 8899999
Q ss_pred ccCCCCce
Q psy850 210 PCVSLQSI 217 (280)
Q Consensus 210 p~~~l~~i 217 (280)
|++++|..
T Consensus 163 Pt~gLD~~ 170 (274)
T PRK13644 163 VTSMLDPD 170 (274)
T ss_pred CcccCCHH
Confidence 99999753
No 161
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9e-31 Score=241.28 Aligned_cols=136 Identities=27% Similarity=0.364 Sum_probs=107.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------------EEEEecCC--CCCCCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------------CAYVSQEA--WITNDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------------ig~v~Q~~--~l~~~T 131 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++ .++..|
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 99 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS 99 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcccc
Confidence 3799999999999999999999999999999999999999999999872 69999997 456789
Q ss_pred HHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
+++|+.++.. .......+.+. ..+..+ +.....++++.+||||||||++|||||+.+| ++||||
T Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~LS~G~~qrl~laraL~~~p------~lLilD 166 (283)
T PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVD-----NALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP------KVLVLD 166 (283)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHH-----HHHHHC--CChhhhhCCcccCCHHHHHHHHHHHHHHcCC------CEEEEe
Confidence 9999987532 11111111111 111111 2233456778899999999999999999998 889999
Q ss_pred cccCCCCce
Q psy850 209 CPCVSLQSI 217 (280)
Q Consensus 209 ep~~~l~~i 217 (280)
||++++|..
T Consensus 167 EPt~gLD~~ 175 (283)
T PRK13636 167 EPTAGLDPM 175 (283)
T ss_pred CCccCCCHH
Confidence 999999763
No 162
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.2e-30 Score=229.41 Aligned_cols=142 Identities=26% Similarity=0.329 Sum_probs=108.3
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCCC-CcHHHHHHhCC
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWITN-DTLRHNILFGE 140 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~~-~Tv~enI~~g~ 140 (280)
++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++ .|+++|+.++.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 899999999999999999999999999999999999999999873 799999987764 69999998754
Q ss_pred CCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 141 PFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 141 ~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
... .......+ ...+..+ +.....++++.+||||||||++|||||+.+| ++|+||||++++|..
T Consensus 96 ~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p------~llllDEP~~~LD~~ 162 (211)
T cd03298 96 SPGLKLTAEDRQAI-----EVALARV--GLAGLEKRLPGELSGGERQRVALARVLVRDK------PVLLLDEPFAALDPA 162 (211)
T ss_pred ccccCccHHHHHHH-----HHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHHHHhcCC------CEEEEcCCcccCCHH
Confidence 211 00111111 1112211 2233455677899999999999999999998 889999999999875
Q ss_pred EEEeehhhhh
Q psy850 218 LLMEEVNVYV 227 (280)
Q Consensus 218 lllDE~~~~~ 227 (280)
-...-.+++.
T Consensus 163 ~~~~l~~~l~ 172 (211)
T cd03298 163 LRAEMLDLVL 172 (211)
T ss_pred HHHHHHHHHH
Confidence 4443334343
No 163
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=238.63 Aligned_cols=139 Identities=24% Similarity=0.397 Sum_probs=106.2
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC---------------eEEEEecCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG---------------TCAYVSQEAWI 127 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G---------------~ig~v~Q~~~l 127 (280)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++.+
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 3589999999999999999999999999999999999975 899999876 26899999887
Q ss_pred CCCcHHHHHHhCCCCC-----hhhHHHHHHHhhhhhhHhhCCC--CCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhh
Q psy850 128 TNDTLRHNILFGEPFE-----PQRYYKTLYNCALNTDIHILPG--GDQTEIGERGINLSGGQKQRVALARALYSNSFEQQ 200 (280)
Q Consensus 128 ~~~Tv~enI~~g~~~~-----~~~~~~~~~~~~l~~~l~~l~~--g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~ 200 (280)
++.|+.+|+.++.... .......+. ..+..+.- ......++++.+|||||||||+|||||+.+|
T Consensus 112 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p---- 182 (267)
T PRK14235 112 FPKSIYENVAYGPRIHGLARSKAELDEIVE-----TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSP---- 182 (267)
T ss_pred CCCcHHHHHHHHHHhcccccchHHHHHHHH-----HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCC----
Confidence 7779999998753211 111111111 11111100 0012345678899999999999999999998
Q ss_pred hhhhhhhccccCCCCce
Q psy850 201 TFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~i 217 (280)
++||||||++++|..
T Consensus 183 --~lllLDEPt~~LD~~ 197 (267)
T PRK14235 183 --EVILMDEPCSALDPI 197 (267)
T ss_pred --CEEEEeCCCcCCCHH
Confidence 889999999999764
No 164
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=8.2e-31 Score=234.92 Aligned_cols=139 Identities=30% Similarity=0.360 Sum_probs=109.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC---------------eEEEEecCCCCC-CCcH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---------------TCAYVSQEAWIT-NDTL 132 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G---------------~ig~v~Q~~~l~-~~Tv 132 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|+
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA 94 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence 479999999999999999999999999999999999999999999887 268999998666 5799
Q ss_pred HHHHHhCCC----CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 133 RHNILFGEP----FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 133 ~enI~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
++|+.++.. .........+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|+||
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p------~llllD 161 (240)
T PRK09493 95 LENVMFGPLRVRGASKEEAEKQA-----RELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKP------KLMLFD 161 (240)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHH-----HHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHHhcCC------CEEEEc
Confidence 999987531 1111111111 1122222 3344556778899999999999999999998 889999
Q ss_pred cccCCCCceEEE
Q psy850 209 CPCVSLQSILLM 220 (280)
Q Consensus 209 ep~~~l~~illl 220 (280)
||++++|..-..
T Consensus 162 EP~~~LD~~~~~ 173 (240)
T PRK09493 162 EPTSALDPELRH 173 (240)
T ss_pred CCcccCCHHHHH
Confidence 999999875433
No 165
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=1.2e-30 Score=233.87 Aligned_cols=151 Identities=21% Similarity=0.237 Sum_probs=112.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCCC-CcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWITN-DTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~~-~Tv~ 133 (280)
.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|. ++|++|++.+++ .|++
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF 95 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence 4799999999999999999999999999999999999999999999872 789999987764 6999
Q ss_pred HHHHhCCCCChh---h---HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 134 HNILFGEPFEPQ---R---YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 134 enI~~g~~~~~~---~---~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
+|+.++...... . .............+..+ +.....++++.+|||||||||+|||||+.+| ++|+|
T Consensus 96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral~~~p------~~lll 167 (242)
T TIGR03411 96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLLMQDP------KLLLL 167 (242)
T ss_pred HHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEe
Confidence 999875321100 0 00000001111222222 2334456778899999999999999999998 88999
Q ss_pred ccccCCCCceEEEeehhhhh
Q psy850 208 LCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 208 dep~~~l~~illlDE~~~~~ 227 (280)
|||++++|..-...-.+++.
T Consensus 168 DEPt~~LD~~~~~~l~~~l~ 187 (242)
T TIGR03411 168 DEPVAGMTDEETEKTAELLK 187 (242)
T ss_pred cCCccCCCHHHHHHHHHHHH
Confidence 99999998754433334333
No 166
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.5e-31 Score=229.81 Aligned_cols=127 Identities=28% Similarity=0.296 Sum_probs=104.9
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEECCe------------EEEEecCCCCC-CCc
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR---STAGKLSREGT------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~---p~~G~I~i~G~------------ig~v~Q~~~l~-~~T 131 (280)
+.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|. ++|++|++.++ ..|
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 99 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLT 99 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCc
Confidence 357999999999999999999999999999999999999 89999998873 78999998665 569
Q ss_pred HHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 132 LRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 132 v~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
+++|+.++... . ..+++..||||||||++|||||+.+| ++|+||||+
T Consensus 100 v~~~l~~~~~~---------~------------------~~~~~~~LS~Ge~qrl~laral~~~p------~llllDEPt 146 (202)
T cd03233 100 VRETLDFALRC---------K------------------GNEFVRGISGGERKRVSIAEALVSRA------SVLCWDNST 146 (202)
T ss_pred HHHHHhhhhhh---------c------------------cccchhhCCHHHHHHHHHHHHHhhCC------CEEEEcCCC
Confidence 99999764210 0 23455679999999999999999998 889999999
Q ss_pred CCCCceEEEeehhhhh
Q psy850 212 VSLQSILLMEEVNVYV 227 (280)
Q Consensus 212 ~~l~~illlDE~~~~~ 227 (280)
+++|..-.-.-.+++.
T Consensus 147 ~~LD~~~~~~~~~~l~ 162 (202)
T cd03233 147 RGLDSSTALEILKCIR 162 (202)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9998754433333333
No 167
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=235.47 Aligned_cols=147 Identities=22% Similarity=0.275 Sum_probs=108.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECCe-------------EEEEecCCCC-CC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREGT-------------CAYVSQEAWI-TN 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G~-------------ig~v~Q~~~l-~~ 129 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|. ++|++|++.+ +.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 479999999999999999999999999999999999974 6999999873 7899999864 46
Q ss_pred CcHHHHHHhCCCCC-----hhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 130 DTLRHNILFGEPFE-----PQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 130 ~Tv~enI~~g~~~~-----~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
.|+.+|+.++.... .....+.+. ..+..+. .......+.++.+|||||||||+|||||+.+|
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p------ 165 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKSKKELQERVR-----WALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQP------ 165 (250)
T ss_pred CcHHHHHHHHHHhccccCCHHHHHHHHH-----HHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 79999998753211 111111111 1111110 00112346677899999999999999999998
Q ss_pred hhhhhccccCCCCceEEEeehhhh
Q psy850 203 HFLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 203 ~ll~ldep~~~l~~illlDE~~~~ 226 (280)
++|+||||++++|..-.-.-.+++
T Consensus 166 ~lllLDEP~~~LD~~~~~~l~~~l 189 (250)
T PRK14247 166 EVLLADEPTANLDPENTAKIESLF 189 (250)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHH
Confidence 889999999999875443333333
No 168
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=3.7e-31 Score=227.08 Aligned_cols=136 Identities=26% Similarity=0.298 Sum_probs=110.1
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCCC-CCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEAW-ITN 129 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~~-l~~ 129 (280)
-.+|++|+|.|++||.++||||+||||||||-.++|+..|++|+|++.|+ +|+|||... +++
T Consensus 23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ 102 (228)
T COG4181 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN 102 (228)
T ss_pred eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc
Confidence 45899999999999999999999999999999999999999999999873 799999975 568
Q ss_pred CcHHHHHHhCCCCChh---hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 130 DTLRHNILFGEPFEPQ---RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 130 ~Tv~enI~~g~~~~~~---~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
+|..||+.+......+ ..+.... ..+.. .|+...+..+|.+|||||||||+||||++.+| ++|+
T Consensus 103 ltAlENV~lPleL~ge~~~~~~~~A~-----~lL~~--vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P------~vLf 169 (228)
T COG4181 103 LTALENVALPLELRGESSADSRAGAK-----ALLEA--VGLGKRLTHYPAQLSGGEQQRVALARAFAGRP------DVLF 169 (228)
T ss_pred chhhhhccchhhhcCCccccHHHHHH-----HHHHH--hCcccccccCccccCchHHHHHHHHHHhcCCC------CEEe
Confidence 8999999886543221 1111111 11111 14445567789999999999999999999998 8899
Q ss_pred hccccCCCCc
Q psy850 207 LLCPCVSLQS 216 (280)
Q Consensus 207 ldep~~~l~~ 216 (280)
.||||+++|.
T Consensus 170 ADEPTGNLD~ 179 (228)
T COG4181 170 ADEPTGNLDR 179 (228)
T ss_pred ccCCCCCcch
Confidence 9999999975
No 169
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=1.8e-30 Score=227.57 Aligned_cols=143 Identities=23% Similarity=0.276 Sum_probs=110.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------eEEEEecCCCCC-CCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------TCAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------~ig~v~Q~~~l~-~~Tv~en 135 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|+++|
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 93 (201)
T cd03231 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLEN 93 (201)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHH
Confidence 479999999999999999999999999999999999999999999886 378999987654 6799999
Q ss_pred HHhCCCCC-hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPFE-PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.+..... .++....+... +.......++.+||||||||++|||||+.+| ++||||||++++
T Consensus 94 l~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~laral~~~p------~llllDEPt~~L 156 (201)
T cd03231 94 LRFWHADHSDEQVEEALARV-----------GLNGFEDRPVAQLSAGQQRRVALARLLLSGR------PLWILDEPTTAL 156 (201)
T ss_pred HHhhcccccHHHHHHHHHHc-----------CChhhhcCchhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCCCCC
Confidence 98753221 11111111111 1112234567789999999999999999998 889999999999
Q ss_pred CceEEEeehhhhhc
Q psy850 215 QSILLMEEVNVYVS 228 (280)
Q Consensus 215 ~~illlDE~~~~~~ 228 (280)
|....-.-.+++..
T Consensus 157 D~~~~~~l~~~l~~ 170 (201)
T cd03231 157 DKAGVARFAEAMAG 170 (201)
T ss_pred CHHHHHHHHHHHHH
Confidence 88655544555543
No 170
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.97 E-value=1.2e-30 Score=246.22 Aligned_cols=138 Identities=22% Similarity=0.291 Sum_probs=108.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCC--CCC-C
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEA--WIT-N 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~--~l~-~ 129 (280)
.+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++||+|++ .++ .
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 114 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR 114 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence 4899999999999999999999999999999999999999999999872 79999997 344 5
Q ss_pred CcHHHHHHhCCC-----CChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 130 DTLRHNILFGEP-----FEPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 130 ~Tv~enI~~g~~-----~~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
.|+.+||.++.. .......+.+. ..++.+ +. ....++++.+|||||||||+|||||+.+| +
T Consensus 115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~-----~~l~~v--gl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P------~ 181 (331)
T PRK15079 115 MTIGEIIAEPLRTYHPKLSRQEVKDRVK-----AMMLKV--GLLPNLINRYPHEFSGGQCQRIGIARALILEP------K 181 (331)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHH-----HHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCC------C
Confidence 799999975421 11111111111 112221 11 23457889999999999999999999998 8
Q ss_pred hhhhccccCCCCceEE
Q psy850 204 FLVLLCPCVSLQSILL 219 (280)
Q Consensus 204 ll~ldep~~~l~~ill 219 (280)
+||+|||++++|....
T Consensus 182 llilDEPts~LD~~~~ 197 (331)
T PRK15079 182 LIICDEPVSALDVSIQ 197 (331)
T ss_pred EEEEeCCCccCCHHHH
Confidence 8999999999986543
No 171
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.1e-30 Score=229.14 Aligned_cols=147 Identities=24% Similarity=0.295 Sum_probs=110.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCCC-CCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l~-~~Tv~en 135 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|+.||
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~ 94 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALEN 94 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHH
Confidence 4799999999999999999999999999999999999999999999873 78999987665 5799999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+.+............+. ..++.+ +.....++++.+||||||||++|||||+.+| ++|+||||+.++|
T Consensus 95 l~~~~~~~~~~~~~~~~-----~~l~~~--gl~~~~~~~~~~LS~G~~qrl~la~al~~~p------~llllDEPt~~LD 161 (204)
T PRK13538 95 LRFYQRLHGPGDDEALW-----EALAQV--GLAGFEDVPVRQLSAGQQRRVALARLWLTRA------PLWILDEPFTAID 161 (204)
T ss_pred HHHHHHhcCccHHHHHH-----HHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHHhcCC------CEEEEeCCCccCC
Confidence 98753211101111111 111111 2223345667889999999999999999998 8899999999998
Q ss_pred ceEEEeehhhhhc
Q psy850 216 SILLMEEVNVYVS 228 (280)
Q Consensus 216 ~illlDE~~~~~~ 228 (280)
..-.-.-.+++..
T Consensus 162 ~~~~~~l~~~l~~ 174 (204)
T PRK13538 162 KQGVARLEALLAQ 174 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 7544444444443
No 172
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.7e-31 Score=240.79 Aligned_cols=140 Identities=26% Similarity=0.350 Sum_probs=110.1
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCCCCC-
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEAWIT- 128 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~~l~- 128 (280)
...+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 45689999999999999999999999999999999999999999999876 278999998776
Q ss_pred CCcHHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 129 NDTLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 129 ~~Tv~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
..|+++|+.++... ........+ ...+..+ +....++.++.+|||||||||+|||||+.+| ++|
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p------~il 182 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERA-----AEALELV--GLEGWEHKYPDELSGGMQQRVGLARALAVDP------DIL 182 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHHhcCC------CEE
Confidence 57999999875311 111111111 1112222 2334456778899999999999999999998 889
Q ss_pred hhccccCCCCceEE
Q psy850 206 VLLCPCVSLQSILL 219 (280)
Q Consensus 206 ~ldep~~~l~~ill 219 (280)
||||||+++|..-.
T Consensus 183 lLDEPt~~LD~~~~ 196 (269)
T cd03294 183 LMDEAFSALDPLIR 196 (269)
T ss_pred EEcCCCccCCHHHH
Confidence 99999999987543
No 173
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.5e-30 Score=227.64 Aligned_cols=136 Identities=30% Similarity=0.376 Sum_probs=106.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------eEEEEecCCCCC-CCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------TCAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------~ig~v~Q~~~l~-~~Tv~en 135 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++|++|++.++ ..|+++|
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 94 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN 94 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHH
Confidence 479999999999999999999999999999999999999999999987 279999998665 6799999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+.++...... ...+ ...+..+ +.....+.+..+||||||||++|||||+.+| ++|+||||++++|
T Consensus 95 ~~~~~~~~~~--~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p------~~lilDEP~~~LD 159 (200)
T PRK13540 95 CLYDIHFSPG--AVGI-----TELCRLF--SLEHLIDYPCGLLSSGQKRQVALLRLWMSKA------KLWLLDEPLVALD 159 (200)
T ss_pred HHHHHhcCcc--hHHH-----HHHHHHc--CCchhhhCChhhcCHHHHHHHHHHHHHhcCC------CEEEEeCCCcccC
Confidence 9875321111 0111 1112211 1112334556789999999999999999998 7889999999998
Q ss_pred ceEE
Q psy850 216 SILL 219 (280)
Q Consensus 216 ~ill 219 (280)
..-.
T Consensus 160 ~~~~ 163 (200)
T PRK13540 160 ELSL 163 (200)
T ss_pred HHHH
Confidence 7433
No 174
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=1.1e-30 Score=228.02 Aligned_cols=137 Identities=23% Similarity=0.310 Sum_probs=106.0
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCCC-CCcHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l~-~~Tv~e 134 (280)
+.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|+.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE 92 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHH
Confidence 35799999999999999999999999999999999999999999999873 68999987665 479999
Q ss_pred HHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 135 NILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 135 nI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
|+.+........ ...+. ..+..+ +.....+.++.+|||||||||+||||++.+| ++|+||||++++
T Consensus 93 ~l~~~~~~~~~~-~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p------~llllDEPt~~L 158 (198)
T TIGR01189 93 NLHFWAAIHGGA-QRTIE-----DALAAV--GLTGFEDLPAAQLSAGQQRRLALARLWLSRA------PLWILDEPTTAL 158 (198)
T ss_pred HHHHHHHHcCCc-HHHHH-----HHHHHc--CCHHHhcCChhhcCHHHHHHHHHHHHHhcCC------CEEEEeCCCcCC
Confidence 997643211100 11111 111111 1223345667889999999999999999998 888999999999
Q ss_pred CceE
Q psy850 215 QSIL 218 (280)
Q Consensus 215 ~~il 218 (280)
|..-
T Consensus 159 D~~~ 162 (198)
T TIGR01189 159 DKAG 162 (198)
T ss_pred CHHH
Confidence 8753
No 175
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=234.29 Aligned_cols=142 Identities=25% Similarity=0.353 Sum_probs=107.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST-----AGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~-----~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++| .++|++|++.++
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 3799999999999999999999999999999999999987 69998765 279999999877
Q ss_pred CCcHHHHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGEPFE----PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
+.|+++|+.++.... .+...+.+.... .... +........++++.+|||||||||+|||||+.+| ++
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l--~~~~-l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p------~l 168 (251)
T PRK14249 98 PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSL--RQAA-LWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEP------EV 168 (251)
T ss_pred cCcHHHHHhhHHHhcCCChhhHHHHHHHHHH--HHhC-CchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC------CE
Confidence 779999998753211 111111111110 0000 1001123456778899999999999999999998 88
Q ss_pred hhhccccCCCCceEE
Q psy850 205 LVLLCPCVSLQSILL 219 (280)
Q Consensus 205 l~ldep~~~l~~ill 219 (280)
||||||++++|.-..
T Consensus 169 llLDEPt~~LD~~~~ 183 (251)
T PRK14249 169 ILMDEPCSALDPVST 183 (251)
T ss_pred EEEeCCCccCCHHHH
Confidence 999999999986433
No 176
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-30 Score=234.77 Aligned_cols=136 Identities=25% Similarity=0.300 Sum_probs=107.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCC-CCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~-~~Tv~e 134 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|+.+
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 95 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRE 95 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHH
Confidence 4799999999999999999999999999999999999999999999872 79999998666 459999
Q ss_pred HHHhCCCC-----C--hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 135 NILFGEPF-----E--PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 135 nI~~g~~~-----~--~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
|+.++... . .......+ ...+..+ +.....+.++.+|||||||||+|||||+.+| ++|||
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~llll 162 (255)
T PRK11231 96 LVAYGRSPWLSLWGRLSAEDNARV-----NQAMEQT--RINHLADRRLTDLSGGQRQRAFLAMVLAQDT------PVVLL 162 (255)
T ss_pred HHHhccchhhhhccCCCHHHHHHH-----HHHHHHc--CCHHHHcCCcccCCHHHHHHHHHHHHHhcCC------CEEEE
Confidence 99876311 0 01111111 1111111 2233456678899999999999999999998 88999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
|||++++|..
T Consensus 163 DEP~~~LD~~ 172 (255)
T PRK11231 163 DEPTTYLDIN 172 (255)
T ss_pred cCCcccCCHH
Confidence 9999999874
No 177
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=1e-30 Score=236.06 Aligned_cols=136 Identities=26% Similarity=0.308 Sum_probs=107.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------------------------eEEEEe
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------------------------TCAYVS 122 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--------------------------~ig~v~ 122 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 479999999999999999999999999999999999999999998876 278999
Q ss_pred cCCCCC-CCcHHHHHHhCCC----CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCc
Q psy850 123 QEAWIT-NDTLRHNILFGEP----FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSF 197 (280)
Q Consensus 123 Q~~~l~-~~Tv~enI~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~ 197 (280)
|++.++ ..|+.+|+.++.. .........+ ...+..+ +....+++.+.+||||||||++|||||+.+|
T Consensus 94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~~~p- 165 (252)
T TIGR03005 94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRA-----MELLDMV--GLADKADHMPAQLSGGQQQRVAIARALAMRP- 165 (252)
T ss_pred cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CChhHhhcChhhcCHHHHHHHHHHHHHHcCC-
Confidence 998766 5799999987421 1111111111 1122222 2334456778899999999999999999998
Q ss_pred hhhhhhhhhhccccCCCCce
Q psy850 198 EQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 198 i~~~~~ll~ldep~~~l~~i 217 (280)
++|+||||++++|..
T Consensus 166 -----~llllDEP~~~LD~~ 180 (252)
T TIGR03005 166 -----KVMLFDEVTSALDPE 180 (252)
T ss_pred -----CEEEEeCCcccCCHH
Confidence 889999999999864
No 178
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-30 Score=233.51 Aligned_cols=136 Identities=27% Similarity=0.338 Sum_probs=106.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------------EEEEecCCCCC-
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------------CAYVSQEAWIT- 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------------ig~v~Q~~~l~- 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 4799999999999999999999999999999999999999999998762 68999998766
Q ss_pred CCcHHHHHHhCC-C---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGE-P---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~-~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
..|+.+|+.+.. . ......... ....+..+ +....+++++.+|||||||||+|||||+.+| ++
T Consensus 96 ~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~~~p------~l 162 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGLSKDQALAR-----AEKLLERL--RLKPYADRFPLHLSGGQQQRVAIARALMMEP------QV 162 (242)
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCC------CE
Confidence 469999996421 0 111111111 11122222 2334456778899999999999999999998 88
Q ss_pred hhhccccCCCCce
Q psy850 205 LVLLCPCVSLQSI 217 (280)
Q Consensus 205 l~ldep~~~l~~i 217 (280)
||||||++++|..
T Consensus 163 lilDEPt~~LD~~ 175 (242)
T PRK11124 163 LLFDEPTAALDPE 175 (242)
T ss_pred EEEcCCCCcCCHH
Confidence 9999999999874
No 179
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=236.23 Aligned_cols=138 Identities=22% Similarity=0.331 Sum_probs=105.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECCe---------------EEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREGT---------------CAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G~---------------ig~v~Q~~~l~ 128 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|. ++|++|++.++
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 479999999999999999999999999999999999985 7999998762 68999998777
Q ss_pred CCcHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCC--CCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 129 NDTLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPG--GDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 129 ~~Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~--g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
..|+++|+.++.. .........+. ..+..+.. .....+++++.+|||||||||+|||||+.+| +
T Consensus 106 ~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p------~ 174 (258)
T PRK14268 106 PMSIYDNVAYGPRIHGANKKDLDGVVE-----NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKP------K 174 (258)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCC------C
Confidence 7899999987521 11111111111 11111100 0123345677889999999999999999998 8
Q ss_pred hhhhccccCCCCce
Q psy850 204 FLVLLCPCVSLQSI 217 (280)
Q Consensus 204 ll~ldep~~~l~~i 217 (280)
+|+||||++++|..
T Consensus 175 llllDEPt~~LD~~ 188 (258)
T PRK14268 175 IILFDEPTSALDPI 188 (258)
T ss_pred EEEEeCCCcccCHH
Confidence 89999999999764
No 180
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=236.38 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=107.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCC-CCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~-~~Tv~e 134 (280)
.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|+++
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 100 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQE 100 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHH
Confidence 4799999999999999999999999999999999999999999999873 79999998665 579999
Q ss_pred HHHhCCCCC-------hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 135 NILFGEPFE-------PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 135 nI~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
|+.++.... .......+ ...+..+ +.....++++.+||||||||++|||||+.+| ++|+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~laral~~~p------~llll 167 (265)
T PRK10253 101 LVARGRYPHQPLFTRWRKEDEEAV-----TKAMQAT--GITHLADQSVDTLSGGQRQRAWIAMVLAQET------AIMLL 167 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHH-----HHHHHHc--CCHHHhcCCcccCChHHHHHHHHHHHHhcCC------CEEEE
Confidence 998753110 01111111 1112211 2233456778899999999999999999998 88999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
|||++++|..
T Consensus 168 DEPt~gLD~~ 177 (265)
T PRK10253 168 DEPTTWLDIS 177 (265)
T ss_pred eCccccCCHH
Confidence 9999999854
No 181
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-30 Score=232.07 Aligned_cols=139 Identities=27% Similarity=0.446 Sum_probs=107.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCCC-CcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWITN-DTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~~-~Tv~ 133 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++ .|+.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE 98 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHH
Confidence 4799999999999999999999999999999999999999999998872 789999987665 6999
Q ss_pred HHHHhCCCCC-hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 134 HNILFGEPFE-PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 134 enI~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+|+.++.... .......+.. .+..+. +.......++.+|||||||||+|||||+.+| ++|+||||++
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~~-----~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p------~illlDEPt~ 166 (237)
T PRK11614 99 ENLAMGGFFAERDQFQERIKW-----VYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQP------RLLLLDEPSL 166 (237)
T ss_pred HHHHHhhhccChhHHHHHHHH-----HHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhCC------CEEEEcCccc
Confidence 9998754211 1111111111 111110 0112234567789999999999999999998 8899999999
Q ss_pred CCCceEE
Q psy850 213 SLQSILL 219 (280)
Q Consensus 213 ~l~~ill 219 (280)
++|..-.
T Consensus 167 ~LD~~~~ 173 (237)
T PRK11614 167 GLAPIII 173 (237)
T ss_pred cCCHHHH
Confidence 9987543
No 182
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-30 Score=238.33 Aligned_cols=136 Identities=26% Similarity=0.345 Sum_probs=106.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCC--CCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEA--WITN 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~--~l~~ 129 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++ .++.
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 4799999999999999999999999999999999999999999998762 68999997 4567
Q ss_pred CcHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 130 DTLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 130 ~Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
.|+++|+.++.. .........+. ..+..+ +.. ....+++.+|||||||||+|||||+.+| ++|
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p------~ll 167 (280)
T PRK13649 101 ETVLKDVAFGPQNFGVSQEEAEALAR-----EKLALV--GISESLFEKNPFELSGGQMRRVAIAGILAMEP------KIL 167 (280)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCChhhhhCCcccCCHHHHHHHHHHHHHHcCC------CEE
Confidence 799999986421 11111111111 111111 222 2346678899999999999999999998 889
Q ss_pred hhccccCCCCce
Q psy850 206 VLLCPCVSLQSI 217 (280)
Q Consensus 206 ~ldep~~~l~~i 217 (280)
|||||++++|..
T Consensus 168 lLDEPt~~LD~~ 179 (280)
T PRK13649 168 VLDEPTAGLDPK 179 (280)
T ss_pred EEeCCcccCCHH
Confidence 999999999764
No 183
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2e-30 Score=229.33 Aligned_cols=136 Identities=24% Similarity=0.280 Sum_probs=105.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------EEEEecCCCCCC-CcHHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------CAYVSQEAWITN-DTLRHNIL 137 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------ig~v~Q~~~l~~-~Tv~enI~ 137 (280)
.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++. .|+++|+.
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 104 (214)
T PRK13543 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLH 104 (214)
T ss_pred eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHH
Confidence 3799999999999999999999999999999999999999999999873 799999986664 59999997
Q ss_pred hCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 138 FGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+..........+... ..+..+ +.....+.++.+|||||||||+||||++.+| ++|+||||++++|..
T Consensus 105 ~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~llllDEPt~~LD~~ 171 (214)
T PRK13543 105 FLCGLHGRRAKQMPG-----SALAIV--GLAGYEDTLVRQLSAGQKKRLALARLWLSPA------PLWLLDEPYANLDLE 171 (214)
T ss_pred HHHHhcCCcHHHHHH-----HHHHHc--CChhhccCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccCCHH
Confidence 642211101111111 111111 1222345667889999999999999999998 788999999999874
No 184
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-30 Score=235.21 Aligned_cols=137 Identities=26% Similarity=0.322 Sum_probs=107.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCC-CCCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWI-TNDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l-~~~Tv~e 134 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+ +..|+++
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 95 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE 95 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH
Confidence 4799999999999999999999999999999999999999999999873 6899999866 5779999
Q ss_pred HHHhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhc------CCchhhhhhhh
Q psy850 135 NILFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYS------NSFEQQTFHFL 205 (280)
Q Consensus 135 nI~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~------~p~i~~~~~ll 205 (280)
|+.++.... .......+. ..+..+ +.....+.++.+|||||||||+|||||+. +| ++|
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p------~ll 162 (258)
T PRK13548 96 VVAMGRAPHGLSRAEDDALVA-----AALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP------RWL 162 (258)
T ss_pred HHHhhhcccCCCcHHHHHHHH-----HHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC------CEE
Confidence 998753211 111111111 112211 22334566788999999999999999994 66 889
Q ss_pred hhccccCCCCceE
Q psy850 206 VLLCPCVSLQSIL 218 (280)
Q Consensus 206 ~ldep~~~l~~il 218 (280)
+||||++++|..-
T Consensus 163 lLDEPt~~LD~~~ 175 (258)
T PRK13548 163 LLDEPTSALDLAH 175 (258)
T ss_pred EEeCCcccCCHHH
Confidence 9999999998753
No 185
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.6e-30 Score=237.43 Aligned_cols=136 Identities=30% Similarity=0.443 Sum_probs=107.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCC--CCCCCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEA--WITNDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~--~l~~~Tv~ 133 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++ .++..|+.
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE 97 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence 3799999999999999999999999999999999999999999999873 79999997 35578999
Q ss_pred HHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
+|+.++.. .......+.+. ..+..+ +......+++.+||||||||++|||||+.+| ++||||||
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p------~llilDEP 164 (277)
T PRK13652 98 QDIAFGPINLGLDEETVAHRVS-----SALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIAMEP------QVLVLDEP 164 (277)
T ss_pred HHHHhHHHHcCCCHHHHHHHHH-----HHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHHcCC------CEEEEeCC
Confidence 99986432 11111111111 111211 2233456678899999999999999999998 88999999
Q ss_pred cCCCCce
Q psy850 211 CVSLQSI 217 (280)
Q Consensus 211 ~~~l~~i 217 (280)
++++|..
T Consensus 165 t~gLD~~ 171 (277)
T PRK13652 165 TAGLDPQ 171 (277)
T ss_pred cccCCHH
Confidence 9999864
No 186
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.97 E-value=1.9e-30 Score=235.26 Aligned_cols=136 Identities=26% Similarity=0.332 Sum_probs=105.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------------------------eEEEEe
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------------------------TCAYVS 122 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--------------------------~ig~v~ 122 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 98 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence 479999999999999999999999999999999999999999998876 269999
Q ss_pred cCCCCCC-CcHHHHHHhCC----CCChhhHHHHHHHhhhhhhHhhCCCCCchhh-ccCCCCCCHHHHHHHHHHHHHhcCC
Q psy850 123 QEAWITN-DTLRHNILFGE----PFEPQRYYKTLYNCALNTDIHILPGGDQTEI-GERGINLSGGQKQRVALARALYSNS 196 (280)
Q Consensus 123 Q~~~l~~-~Tv~enI~~g~----~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i-~~~~~~LSGGQrQRV~LARAL~~~p 196 (280)
|++.++. .|++||+.++. ..........+ ...+..+ +..... .+++.+||||||||++|||||+.+|
T Consensus 99 q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~~LS~G~~qrv~laral~~~p 171 (257)
T PRK10619 99 QHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA-----VKYLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEP 171 (257)
T ss_pred cCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9987764 69999997632 11111111111 1112222 222222 5667889999999999999999998
Q ss_pred chhhhhhhhhhccccCCCCce
Q psy850 197 FEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 197 ~i~~~~~ll~ldep~~~l~~i 217 (280)
++||||||+.++|..
T Consensus 172 ------~llllDEPt~~LD~~ 186 (257)
T PRK10619 172 ------EVLLFDEPTSALDPE 186 (257)
T ss_pred ------CEEEEeCCcccCCHH
Confidence 889999999999763
No 187
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.2e-30 Score=236.05 Aligned_cols=139 Identities=25% Similarity=0.355 Sum_probs=105.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 37999999999999999999999999999999999987 4899999876 268999998877
Q ss_pred CCcHHHHHHhCCCCC----hhhHHHHHHHhhhhhhHhhC--CCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPFE----PQRYYKTLYNCALNTDIHIL--PGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l--~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+.|+++|+.++.... .....+.+.. .+..+ .....+.+++++.+|||||||||+|||||+.+|
T Consensus 119 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~-----~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p------ 187 (272)
T PRK14236 119 PKSIYENVVYGLRLQGINNRRVLDEAVER-----SLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEP------ 187 (272)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHH-----HHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCC------
Confidence 679999998753211 1111111111 11111 000113456678899999999999999999998
Q ss_pred hhhhhccccCCCCceE
Q psy850 203 HFLVLLCPCVSLQSIL 218 (280)
Q Consensus 203 ~ll~ldep~~~l~~il 218 (280)
++||||||++++|..-
T Consensus 188 ~lllLDEPt~gLD~~~ 203 (272)
T PRK14236 188 EVLLLDEPTSALDPIS 203 (272)
T ss_pred CEEEEeCCcccCCHHH
Confidence 8899999999998753
No 188
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=1.1e-30 Score=260.92 Aligned_cols=136 Identities=22% Similarity=0.241 Sum_probs=115.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+|+.|+++|
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 435 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD 435 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence 4799999999999999999999999999999999999999999999983 689999999999999999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
.. .....++..+.++.+.+...+..+|.|+.+. .+||||||||++|||||+.+| ++||||||++++|
T Consensus 436 ~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~------~ililDE~ts~LD 502 (555)
T TIGR01194 436 EG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDR------PILLFDEWAADQD 502 (555)
T ss_pred cc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCC------CEEEEeCCccCCC
Confidence 52 1222344445555555666666777776653 679999999999999999998 7899999999998
Q ss_pred ce
Q psy850 216 SI 217 (280)
Q Consensus 216 ~i 217 (280)
+-
T Consensus 503 ~~ 504 (555)
T TIGR01194 503 PA 504 (555)
T ss_pred HH
Confidence 74
No 189
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.97 E-value=8.5e-31 Score=251.40 Aligned_cols=141 Identities=23% Similarity=0.324 Sum_probs=111.7
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC---------------------eEEEEecC
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---------------------TCAYVSQE 124 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G---------------------~ig~v~Q~ 124 (280)
+...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 345689999999999999999999999999999999999999999999986 27999999
Q ss_pred CCCCC-CcHHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhh
Q psy850 125 AWITN-DTLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQ 200 (280)
Q Consensus 125 ~~l~~-~Tv~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~ 200 (280)
+.+++ .|+++|+.++... ......... ...++.+ +.....+.++.+|||||||||+|||||+.+|
T Consensus 115 ~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a-----~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P---- 183 (382)
T TIGR03415 115 FALMPWLTVEENVAFGLEMQGMPEAERRKRV-----DEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDA---- 183 (382)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCC----
Confidence 88774 7999999986421 111111111 1112222 2334456778899999999999999999998
Q ss_pred hhhhhhhccccCCCCceEE
Q psy850 201 TFHFLVLLCPCVSLQSILL 219 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~ill 219 (280)
++|++|||++++|+...
T Consensus 184 --~ILLlDEPts~LD~~~r 200 (382)
T TIGR03415 184 --DILLMDEPFSALDPLIR 200 (382)
T ss_pred --CEEEEECCCccCCHHHH
Confidence 88999999999987543
No 190
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=2e-30 Score=229.74 Aligned_cols=146 Identities=29% Similarity=0.323 Sum_probs=112.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCCCC-Cc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWITN-DT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l~~-~T 131 (280)
.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++. .|
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence 4799999999999999999999999999999999999999999998863 799999987664 79
Q ss_pred HHHHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 132 LRHNILFGEPFE----PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 132 v~enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
+.+|+.++.... .......+ ...+..+ +.......++.+||+|||||++|||||+.+| ++|+|
T Consensus 99 ~~~n~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~laral~~~p------~illl 165 (220)
T TIGR02982 99 ARQNVQMALELQPNLSYQEARERA-----RAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIARALVHRP------KLVLA 165 (220)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcCC------CEEEE
Confidence 999998753211 11111111 1122222 2334456677899999999999999999998 88999
Q ss_pred ccccCCCCceEEEeehhhhh
Q psy850 208 LCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 208 dep~~~l~~illlDE~~~~~ 227 (280)
|||++++|.--...-.+++.
T Consensus 166 DEP~~~LD~~~~~~l~~~l~ 185 (220)
T TIGR02982 166 DEPTAALDSKSGRDVVELMQ 185 (220)
T ss_pred eCCCCcCCHHHHHHHHHHHH
Confidence 99999998755443334443
No 191
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.97 E-value=2e-30 Score=258.44 Aligned_cols=134 Identities=25% Similarity=0.328 Sum_probs=105.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+|+.|+++|
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 416 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE 416 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence 3799999999999999999999999999999999999999999999873 799999999999999988
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+.....+...+.+..+.+...... +.+. ..+.+||||||||++||||++++| ++|||||||+++|
T Consensus 417 ---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~------~ililDE~ts~LD 481 (547)
T PRK10522 417 ---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEER------DILLLDEWAADQD 481 (547)
T ss_pred ---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCC------CEEEEECCCCCCC
Confidence 222222233333333222222111 1110 125689999999999999999998 8899999999998
Q ss_pred ce
Q psy850 216 SI 217 (280)
Q Consensus 216 ~i 217 (280)
..
T Consensus 482 ~~ 483 (547)
T PRK10522 482 PH 483 (547)
T ss_pred HH
Confidence 73
No 192
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.9e-30 Score=237.76 Aligned_cols=136 Identities=29% Similarity=0.357 Sum_probs=107.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC---ceEEECCe-------------EEEEecCC--CCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTA---GKLSREGT-------------CAYVSQEA--WITND 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~---G~I~i~G~-------------ig~v~Q~~--~l~~~ 130 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|. ++|++|++ .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 37999999999999999999999999999999999999987 89998873 79999997 35578
Q ss_pred cHHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 131 TLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 131 Tv~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
|+++|+.++... ......+.+.. .+..+ +.....++++.+|||||||||+|||||+.+| ++|||
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~-----~l~~~--~L~~~~~~~~~~LS~G~~qrv~laral~~~P------~llll 167 (282)
T PRK13640 101 TVGDDVAFGLENRAVPRPEMIKIVRD-----VLADV--GMLDYIDSEPANLSGGQKQRVAIAGILAVEP------KIIIL 167 (282)
T ss_pred CHHHHHHhhHHhCCCCHHHHHHHHHH-----HHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHHcCC------CEEEE
Confidence 999999875321 11111111111 11211 2334456778899999999999999999998 88999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
|||++++|..
T Consensus 168 DEPt~gLD~~ 177 (282)
T PRK13640 168 DESTSMLDPA 177 (282)
T ss_pred ECCcccCCHH
Confidence 9999999764
No 193
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=1.9e-30 Score=222.39 Aligned_cols=112 Identities=37% Similarity=0.508 Sum_probs=98.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+++.|+++|
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 95 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAEN 95 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHH
Confidence 479999999999999999999999999999999999999999999987 2789999987777788888
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+ ||||||||++|||||+.+| ++|+||||+.++|
T Consensus 96 l-----------------------------------------LS~G~~qrv~la~al~~~p------~~lllDEPt~~LD 128 (173)
T cd03246 96 I-----------------------------------------LSGGQRQRLGLARALYGNP------RILVLDEPNSHLD 128 (173)
T ss_pred C-----------------------------------------cCHHHHHHHHHHHHHhcCC------CEEEEECCccccC
Confidence 6 9999999999999999998 8899999999998
Q ss_pred ceEEEeehhhhh
Q psy850 216 SILLMEEVNVYV 227 (280)
Q Consensus 216 ~illlDE~~~~~ 227 (280)
..-.-.-.+++.
T Consensus 129 ~~~~~~l~~~l~ 140 (173)
T cd03246 129 VEGERALNQAIA 140 (173)
T ss_pred HHHHHHHHHHHH
Confidence 754333333333
No 194
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.1e-30 Score=237.80 Aligned_cols=136 Identities=30% Similarity=0.404 Sum_probs=106.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------------EEEEecCC--CCCCCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------------CAYVSQEA--WITNDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------------ig~v~Q~~--~l~~~T 131 (280)
.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++ .++..|
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT 95 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence 4799999999999999999999999999999999999999999998872 68999996 456779
Q ss_pred HHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
+.+|+.++... ........+. ..+..+ +.....++++.+||||||||++|||||+.+| ++|+||
T Consensus 96 v~e~i~~~~~~~~~~~~~~~~~~~-----~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral~~~p------~llllD 162 (275)
T PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVK-----EALKAV--GMEGFENKPPHHLSGGQKKRVAIAGILAMKP------EIIVLD 162 (275)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEEe
Confidence 99999875311 1111111111 112211 2223445678899999999999999999998 889999
Q ss_pred cccCCCCce
Q psy850 209 CPCVSLQSI 217 (280)
Q Consensus 209 ep~~~l~~i 217 (280)
||++++|..
T Consensus 163 EPt~gLD~~ 171 (275)
T PRK13639 163 EPTSGLDPM 171 (275)
T ss_pred CCCcCCCHH
Confidence 999999764
No 195
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-30 Score=235.09 Aligned_cols=138 Identities=23% Similarity=0.325 Sum_probs=106.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++.++
T Consensus 34 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 113 (267)
T PRK14237 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPF 113 (267)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccc
Confidence 47999999999999999999999999999999999996 5899998876 269999998877
Q ss_pred CCcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+.|+++|+.++... ........+.. .+..+. ......+++++.+||||||||++|||||+.+|
T Consensus 114 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~-----~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p------ 182 (267)
T PRK14237 114 AKSIYENITFALERAGVKDKKVLDEIVET-----SLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKP------ 182 (267)
T ss_pred cccHHHHHHhHHHhcCCCCHHHHHHHHHH-----HHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 78999999875321 11111111111 111110 01123456778899999999999999999998
Q ss_pred hhhhhccccCCCCce
Q psy850 203 HFLVLLCPCVSLQSI 217 (280)
Q Consensus 203 ~ll~ldep~~~l~~i 217 (280)
++|+||||++++|..
T Consensus 183 ~lllLDEPt~~LD~~ 197 (267)
T PRK14237 183 DILLMDEPASALDPI 197 (267)
T ss_pred CEEEEeCCcccCCHH
Confidence 889999999999764
No 196
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.97 E-value=4.6e-30 Score=233.06 Aligned_cols=133 Identities=27% Similarity=0.370 Sum_probs=104.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCCCC---CcHHHHHHhCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWITN---DTLRHNILFGEPFE 143 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l~~---~Tv~enI~~g~~~~ 143 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++.++. .++.+++.+.....
T Consensus 18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~ 97 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTK 97 (251)
T ss_pred eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccccc
Confidence 479999999999999999999999999999999999999999999987 5899999976542 47888876532111
Q ss_pred hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceE
Q psy850 144 PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 144 ~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~il 218 (280)
..+....+... +....++.++.+|||||||||+|||||+.+| ++|+||||++++|..-
T Consensus 98 ~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qrv~laral~~~p------~lllLDEPt~~LD~~~ 155 (251)
T PRK09544 98 KEDILPALKRV-----------QAGHLIDAPMQKLSGGETQRVLLARALLNRP------QLLVLDEPTQGVDVNG 155 (251)
T ss_pred HHHHHHHHHHc-----------CChHHHhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCCcCCCHHH
Confidence 11111111111 1223345667889999999999999999998 8899999999998643
No 197
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.4e-30 Score=234.60 Aligned_cols=136 Identities=24% Similarity=0.303 Sum_probs=106.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCC--CCCCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAW--ITNDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~--l~~~Tv~ 133 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++. ++..|+.
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 3699999999999999999999999999999999999999999999873 699999974 4567899
Q ss_pred HHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
+|+.++... ........+. ..+..+ +.....+.++.+||||||||++|||||+.+| ++||||||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~p------~lllLDEP 169 (269)
T PRK13648 103 YDVAFGLENHAVPYDEMHRRVS-----EALKQV--DMLERADYEPNALSGGQKQRVAIAGVLALNP------SVIILDEA 169 (269)
T ss_pred HHHHhhHHhcCCCHHHHHHHHH-----HHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHHcCC------CEEEEeCC
Confidence 999875321 1111111111 111111 1223345678899999999999999999998 88999999
Q ss_pred cCCCCce
Q psy850 211 CVSLQSI 217 (280)
Q Consensus 211 ~~~l~~i 217 (280)
++++|..
T Consensus 170 t~~LD~~ 176 (269)
T PRK13648 170 TSMLDPD 176 (269)
T ss_pred cccCCHH
Confidence 9999764
No 198
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-30 Score=237.85 Aligned_cols=140 Identities=22% Similarity=0.369 Sum_probs=107.4
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWI 127 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l 127 (280)
+.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++.+
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 468999999999999999999999999999999999987 6899999876 26899999887
Q ss_pred CCCcHHHHHHhCCCCC--hhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 128 TNDTLRHNILFGEPFE--PQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 128 ~~~Tv~enI~~g~~~~--~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
++.|+.+|+.++.... .......+. ..+..+. ......+++++.+|||||||||+|||||+.+| +
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p------~ 200 (285)
T PRK14254 132 FPKSIYDNVAYGLKIQGYDGDIDERVE-----ESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDP------E 200 (285)
T ss_pred CcCCHHHHHHHHHHHcCCcHHHHHHHH-----HHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCC------C
Confidence 7679999998642111 111111111 1111110 00112456778899999999999999999998 8
Q ss_pred hhhhccccCCCCceE
Q psy850 204 FLVLLCPCVSLQSIL 218 (280)
Q Consensus 204 ll~ldep~~~l~~il 218 (280)
+||||||++++|..-
T Consensus 201 lLLLDEPts~LD~~~ 215 (285)
T PRK14254 201 VILMDEPASALDPVA 215 (285)
T ss_pred EEEEeCCCCCCCHHH
Confidence 899999999998753
No 199
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.1e-30 Score=239.45 Aligned_cols=147 Identities=22% Similarity=0.312 Sum_probs=108.8
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWI 127 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l 127 (280)
+.+|+++||+|++||+++|+|||||||||||++|+|+++ |++|+|.++| .++|++|++.+
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 137 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNP 137 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcc
Confidence 458999999999999999999999999999999999986 6899999876 27899999887
Q ss_pred CCCcHHHHHHhCCCCChh-----------hHHHHHHHhhhhhhHhhC--CCCCchhhccCCCCCCHHHHHHHHHHHHHhc
Q psy850 128 TNDTLRHNILFGEPFEPQ-----------RYYKTLYNCALNTDIHIL--PGGDQTEIGERGINLSGGQKQRVALARALYS 194 (280)
Q Consensus 128 ~~~Tv~enI~~g~~~~~~-----------~~~~~~~~~~l~~~l~~l--~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~ 194 (280)
++.|+++|+.++...... ..............+..+ .....+.+++++.+|||||||||+|||||++
T Consensus 138 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~ 217 (305)
T PRK14264 138 FPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV 217 (305)
T ss_pred ccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc
Confidence 778999999875321000 000000000011111111 1112234567788999999999999999999
Q ss_pred CCchhhhhhhhhhccccCCCCceEEE
Q psy850 195 NSFEQQTFHFLVLLCPCVSLQSILLM 220 (280)
Q Consensus 195 ~p~i~~~~~ll~ldep~~~l~~illl 220 (280)
+| ++||||||++++|..-..
T Consensus 218 ~p------~lLLLDEPtsgLD~~~~~ 237 (305)
T PRK14264 218 DP------EVILMDEPASALDPIATS 237 (305)
T ss_pred CC------CEEEEeCCcccCCHHHHH
Confidence 98 889999999999874333
No 200
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.6e-30 Score=238.60 Aligned_cols=136 Identities=27% Similarity=0.311 Sum_probs=105.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------------eEEEEecCCC--CC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------------TCAYVSQEAW--IT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------------~ig~v~Q~~~--l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++. ++
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 379999999999999999999999999999999999999999998875 2689999973 45
Q ss_pred CCcHHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
..|+++|+.++... ........+. ..+..+ +. ....++++.+|||||||||+|||||+.+| ++
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~-----~ll~~~--~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p------~l 171 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVP-----ELLKLV--QLPEDYVKRSPFELSGGQKRRVALAGIIAMDG------NT 171 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHHhCC------CE
Confidence 67999999875321 1111111111 111111 12 12345677899999999999999999998 88
Q ss_pred hhhccccCCCCce
Q psy850 205 LVLLCPCVSLQSI 217 (280)
Q Consensus 205 l~ldep~~~l~~i 217 (280)
||||||++++|..
T Consensus 172 LlLDEPt~~LD~~ 184 (289)
T PRK13645 172 LVLDEPTGGLDPK 184 (289)
T ss_pred EEEeCCcccCCHH
Confidence 9999999999874
No 201
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.8e-30 Score=236.64 Aligned_cols=136 Identities=28% Similarity=0.351 Sum_probs=107.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCC--CCCCcH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAW--ITNDTL 132 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~--l~~~Tv 132 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+||++. ++..|+
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 103 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV 103 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence 4799999999999999999999999999999999999999999999862 689999973 456689
Q ss_pred HHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 133 RHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 133 ~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
.+|+.++... ......+.+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++|||||
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~~~p------~llllDE 170 (280)
T PRK13633 104 EEDVAFGPENLGIPPEEIRERVD-----ESLKKV--GMYEYRRHAPHLLSGGQKQRVAIAGILAMRP------ECIIFDE 170 (280)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHH-----HHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHHcCC------CEEEEeC
Confidence 9999876321 1111111111 112211 2334456778899999999999999999998 8899999
Q ss_pred ccCCCCce
Q psy850 210 PCVSLQSI 217 (280)
Q Consensus 210 p~~~l~~i 217 (280)
|++++|..
T Consensus 171 Pt~gLD~~ 178 (280)
T PRK13633 171 PTAMLDPS 178 (280)
T ss_pred CcccCCHH
Confidence 99999763
No 202
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.8e-30 Score=233.45 Aligned_cols=139 Identities=23% Similarity=0.403 Sum_probs=105.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC--C---CCceEEECCe---------------EEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR--S---TAGKLSREGT---------------CAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~--p---~~G~I~i~G~---------------ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|. ++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 47999999999999999999999999999999999987 3 5899988762 68999998877
Q ss_pred CCcHHHHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPFE----PQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+.|+++|+.++.... .......+.. .+..+. ....+.++.++.+||||||||++|||||+.+|
T Consensus 106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~-----~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p------ 174 (259)
T PRK14274 106 PQSIFDNVAYGPRIHGTKNKKKLQEIVEK-----SLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNP------ 174 (259)
T ss_pred ccCHHHHHHhHHHhcCCCCHHHHHHHHHH-----HHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 779999998753211 1111111111 111110 00113346678899999999999999999998
Q ss_pred hhhhhccccCCCCceE
Q psy850 203 HFLVLLCPCVSLQSIL 218 (280)
Q Consensus 203 ~ll~ldep~~~l~~il 218 (280)
++|+||||++++|..-
T Consensus 175 ~llllDEPt~~LD~~~ 190 (259)
T PRK14274 175 DVLLMDEPTSALDPVS 190 (259)
T ss_pred CEEEEcCCcccCCHHH
Confidence 8899999999998743
No 203
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8e-31 Score=231.32 Aligned_cols=144 Identities=26% Similarity=0.298 Sum_probs=115.0
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCC-CCCCc
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAW-ITNDT 131 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~-l~~~T 131 (280)
.++.+|++|+|++++||+++|+||||||||||||.|+|++.|++|++.++|. .+.+||+.. -|+.|
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 4577899999999999999999999999999999999999999999999984 589999965 47889
Q ss_pred HHHHHHhCCCCC-----hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 132 LRHNILFGEPFE-----PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 132 v~enI~~g~~~~-----~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
|+|.|.||+... ..+..++...+....++..+.. +...+|||||||||.|||+|++-......+++|+
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-------R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~ 164 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-------RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLF 164 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-------cchhhcCchHHHHHHHHHHHHHccCCCCCCceEE
Confidence 999999997432 1123333444444444444432 3334699999999999999999776666668889
Q ss_pred hccccCCCCc
Q psy850 207 LLCPCVSLQS 216 (280)
Q Consensus 207 ldep~~~l~~ 216 (280)
|||||+++|-
T Consensus 165 LDEPtsaLDi 174 (259)
T COG4559 165 LDEPTSALDI 174 (259)
T ss_pred ecCCccccch
Confidence 9999998864
No 204
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=251.69 Aligned_cols=138 Identities=25% Similarity=0.337 Sum_probs=110.2
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCCCCC-C
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEAWIT-N 129 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~~l~-~ 129 (280)
..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ +
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~ 120 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH 120 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC
Confidence 4589999999999999999999999999999999999999999999876 379999998776 5
Q ss_pred CcHHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 130 DTLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 130 ~Tv~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
.|+++|+.++... ........+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++||
T Consensus 121 ~Tv~enl~~~~~~~~~~~~~~~~~~-----~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P------~iLL 187 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAEERREKA-----LDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINP------DILL 187 (400)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCC------CEEE
Confidence 7999999876321 111111111 1112222 2334456788899999999999999999998 8899
Q ss_pred hccccCCCCceE
Q psy850 207 LLCPCVSLQSIL 218 (280)
Q Consensus 207 ldep~~~l~~il 218 (280)
|||||+++|+..
T Consensus 188 LDEPts~LD~~~ 199 (400)
T PRK10070 188 MDEAFSALDPLI 199 (400)
T ss_pred EECCCccCCHHH
Confidence 999999998753
No 205
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.1e-30 Score=236.98 Aligned_cols=136 Identities=26% Similarity=0.316 Sum_probs=104.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------------EEEEecCCC--CCCCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------------CAYVSQEAW--ITNDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------------ig~v~Q~~~--l~~~T 131 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+ ++|++|++. ++..+
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 94 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTD 94 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccccc
Confidence 4799999999999999999999999999999999999999999998762 689999974 45568
Q ss_pred HHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
+.+|+.++.. .......+.+. ..+..+ +......+++.+||||||||++|||||+.+| ++||||
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL~~~p------~lllLD 161 (271)
T PRK13638 95 IDSDIAFSLRNLGVPEAEITRRVD-----EALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGALVLQA------RYLLLD 161 (271)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHHHcCC------CEEEEe
Confidence 9999976421 11111111111 112111 1222345667889999999999999999998 889999
Q ss_pred cccCCCCce
Q psy850 209 CPCVSLQSI 217 (280)
Q Consensus 209 ep~~~l~~i 217 (280)
||++++|..
T Consensus 162 EPt~~LD~~ 170 (271)
T PRK13638 162 EPTAGLDPA 170 (271)
T ss_pred CCcccCCHH
Confidence 999999764
No 206
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.97 E-value=1.5e-30 Score=232.68 Aligned_cols=134 Identities=31% Similarity=0.388 Sum_probs=104.9
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------EEEEecCCCCCC-CcHHHHHHhCCC
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------CAYVSQEAWITN-DTLRHNILFGEP 141 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------ig~v~Q~~~l~~-~Tv~enI~~g~~ 141 (280)
|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|++.++. .|+.+|+.++..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999884 489999987664 799999986421
Q ss_pred -----CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 142 -----FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 142 -----~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.........+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++||||||++++|.
T Consensus 81 ~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p------~lllLDEPt~gLD~ 147 (230)
T TIGR01184 81 RVLPDLSKSERRAIV-----EEHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRP------KVLLLDEPFGALDA 147 (230)
T ss_pred hcccCCCHHHHHHHH-----HHHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEcCCCcCCCH
Confidence 1111111111 1112222 2233456678899999999999999999998 88999999999986
Q ss_pred e
Q psy850 217 I 217 (280)
Q Consensus 217 i 217 (280)
.
T Consensus 148 ~ 148 (230)
T TIGR01184 148 L 148 (230)
T ss_pred H
Confidence 4
No 207
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.97 E-value=4e-30 Score=226.81 Aligned_cols=136 Identities=28% Similarity=0.362 Sum_probs=105.6
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCCC-CcHHHHHHh
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWITN-DTLRHNILF 138 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~~-~Tv~enI~~ 138 (280)
++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++. .|+.+|+.+
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 56999999999999999999999999999999999999999999873 789999987764 699999976
Q ss_pred CCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 139 GEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 139 g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+.... .......+ ...+..+ +.....++.+.+||||||||++|||||+.+| ++|+||||+.++|
T Consensus 94 ~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~p------~llllDEPt~~LD 160 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKV-----VDAAQQV--GIADYLDRLPEQLSGGQRQRVALARCLVRPN------PILLLDEPFSALD 160 (213)
T ss_pred HhhccCCccHHHHHHH-----HHHHHHc--CcHHHhhCCcccCCHHHHHHHHHHHHHhcCC------CEEEEcCCCccCC
Confidence 42110 00001111 1112221 2233456677899999999999999999998 7899999999998
Q ss_pred ceEE
Q psy850 216 SILL 219 (280)
Q Consensus 216 ~ill 219 (280)
..-.
T Consensus 161 ~~~~ 164 (213)
T TIGR01277 161 PLLR 164 (213)
T ss_pred HHHH
Confidence 7533
No 208
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4e-30 Score=231.80 Aligned_cols=139 Identities=24% Similarity=0.327 Sum_probs=105.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC--CC---CCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL--RS---TAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~--~p---~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++| .++|++|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 3799999999999999999999999999999999985 36 489999876 278999999887
Q ss_pred CCcHHHHHHhCCCC---C-hhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPF---E-PQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~---~-~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+.|+++|+.++... . .......+. ..+..+. ....+..++++.+|||||||||+|||||+.+|
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p------ 167 (252)
T PRK14239 99 PMSIYENVVYGLRLKGIKDKQVLDEAVE-----KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSP------ 167 (252)
T ss_pred cCcHHHHHHHHHHHcCCCcHHHHHHHHH-----HHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCC------
Confidence 88999999865211 1 111111111 1111110 01123456778899999999999999999998
Q ss_pred hhhhhccccCCCCceE
Q psy850 203 HFLVLLCPCVSLQSIL 218 (280)
Q Consensus 203 ~ll~ldep~~~l~~il 218 (280)
++||||||++++|..-
T Consensus 168 ~llllDEPt~~LD~~~ 183 (252)
T PRK14239 168 KIILLDEPTSALDPIS 183 (252)
T ss_pred CEEEEcCCccccCHHH
Confidence 8899999999997643
No 209
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-30 Score=232.12 Aligned_cols=139 Identities=22% Similarity=0.314 Sum_probs=105.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 379999999999999999999999999999999999763 689999886 268999998777
Q ss_pred CCcHHHHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPFE----PQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+.|+++|+.++.... .....+.+.. .+..+. .......++++.+|||||||||+|||||+.+|
T Consensus 97 ~~t~~~ni~~~~~~~~~~~~~~~~~~~~~-----~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p------ 165 (250)
T PRK14240 97 PMSIYDNVAYGPRTHGIKDKKKLDEIVEK-----SLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEP------ 165 (250)
T ss_pred cccHHHHHHHHHHhcCCCCHHHHHHHHHH-----HHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCC------
Confidence 789999998753211 1111111111 111110 01113345678899999999999999999998
Q ss_pred hhhhhccccCCCCceE
Q psy850 203 HFLVLLCPCVSLQSIL 218 (280)
Q Consensus 203 ~ll~ldep~~~l~~il 218 (280)
++|+||||++++|..-
T Consensus 166 ~llllDEP~~~LD~~~ 181 (250)
T PRK14240 166 EVLLMDEPTSALDPIS 181 (250)
T ss_pred CEEEEeCCCccCCHHH
Confidence 8899999999998743
No 210
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.97 E-value=4.1e-30 Score=232.89 Aligned_cols=141 Identities=28% Similarity=0.341 Sum_probs=107.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCC-CCCCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAW-ITNDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~-l~~~Tv~e 134 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++. .+..|+++
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD 94 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence 4799999999999999999999999999999999999999999999872 789999975 45679999
Q ss_pred HHHhCCCCChh----hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 135 NILFGEPFEPQ----RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 135 nI~~g~~~~~~----~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
|+.++...... ...... ......+..+ +......+++.+|||||||||+|||||+.+| ++++||||
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p------~llllDEP 164 (256)
T TIGR03873 95 VVALGRIPHRSLWAGDSPHDA--AVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP------KLLLLDEP 164 (256)
T ss_pred HHHhcchhhhhhccCCCHHHH--HHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC------CEEEEcCc
Confidence 99875311000 000000 0111122222 2233456678899999999999999999998 88999999
Q ss_pred cCCCCceEE
Q psy850 211 CVSLQSILL 219 (280)
Q Consensus 211 ~~~l~~ill 219 (280)
++++|..-.
T Consensus 165 t~~LD~~~~ 173 (256)
T TIGR03873 165 TNHLDVRAQ 173 (256)
T ss_pred cccCCHHHH
Confidence 999987433
No 211
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=5.1e-30 Score=261.11 Aligned_cols=141 Identities=28% Similarity=0.417 Sum_probs=115.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCCCCCcHHHHHHhCCC-----
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWITNDTLRHNILFGEP----- 141 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l~~~Tv~enI~~g~~----- 141 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +++|++|++.+++.|++||+.++..
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 545 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMK 545 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhh
Confidence 579999999999999999999999999999999999999999999864 5899999999988899999998642
Q ss_pred ---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 142 ---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 142 ---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
...++..+.++...+...+.. +.+.++..+ .+.+||||||||++|||||+++| ++|||||||+++|..
T Consensus 546 ~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p------~illLDEpts~LD~~ 616 (659)
T TIGR00954 546 RRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKP------QFAILDECTSAVSVD 616 (659)
T ss_pred ccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCC------CEEEEeCCccCCCHH
Confidence 112233344444444444433 445555543 56789999999999999999998 889999999999874
No 212
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.7e-30 Score=231.64 Aligned_cols=139 Identities=22% Similarity=0.321 Sum_probs=106.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECCe---------------EEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREGT---------------CAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G~---------------ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|. ++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 479999999999999999999999999999999999875 7899998762 79999999887
Q ss_pred CCcHHHHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPFE----PQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+.|+++|+.++.... .......+.. .+..+. .+.....+.++.+||||||||++|||||+.+|
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~-----~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p------ 166 (251)
T PRK14270 98 PMSIYDNVAYGPRIHGIKDKKELDKIVEW-----ALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKP------ 166 (251)
T ss_pred CCcHHHHHHhHHHhcCCCcHHHHHHHHHH-----HHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 899999998753211 1111111111 111110 01122345678899999999999999999998
Q ss_pred hhhhhccccCCCCceE
Q psy850 203 HFLVLLCPCVSLQSIL 218 (280)
Q Consensus 203 ~ll~ldep~~~l~~il 218 (280)
++|+||||++++|..-
T Consensus 167 ~llllDEP~~~LD~~~ 182 (251)
T PRK14270 167 DVILMDEPTSALDPIS 182 (251)
T ss_pred CEEEEeCCcccCCHHH
Confidence 8899999999998743
No 213
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.8e-30 Score=232.96 Aligned_cols=141 Identities=23% Similarity=0.372 Sum_probs=105.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++.++
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 103 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF 103 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence 47999999999999999999999999999999999986 4799999876 279999998777
Q ss_pred CCcHHHHHHhCCCCCh--hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 129 NDTLRHNILFGEPFEP--QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~~--~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
+.|+.+|+.++..... ....+...... ...... .......++++.+||||||||++|||||+.+| ++||
T Consensus 104 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l--~~~~l~-~~l~~~~~~~~~~LSgGq~qrv~laral~~~p------~lll 174 (264)
T PRK14243 104 PKSIYDNIAYGARINGYKGDMDELVERSL--RQAALW-DEVKDKLKQSGLSLSGGQQQRLCIARAIAVQP------EVIL 174 (264)
T ss_pred cccHHHHHHhhhhhcCcchHHHHHHHHHH--HHhCch-hhHHHHhcCCcccCCHHHHHHHHHHHHHhcCC------CEEE
Confidence 6799999987642210 11111111100 000000 00112345678899999999999999999998 8899
Q ss_pred hccccCCCCceE
Q psy850 207 LLCPCVSLQSIL 218 (280)
Q Consensus 207 ldep~~~l~~il 218 (280)
||||++++|.--
T Consensus 175 LDEPt~~LD~~~ 186 (264)
T PRK14243 175 MDEPCSALDPIS 186 (264)
T ss_pred EeCCCccCCHHH
Confidence 999999997643
No 214
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=4.2e-30 Score=226.18 Aligned_cols=137 Identities=28% Similarity=0.361 Sum_probs=105.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------EEEEecCCCC-CCCcHHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------CAYVSQEAWI-TNDTLRHNIL 137 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------ig~v~Q~~~l-~~~Tv~enI~ 137 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+ +..|+.+|+.
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 95 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLE 95 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHH
Confidence 4799999999999999999999999999999999999999999999873 6899987654 4679999997
Q ss_pred hCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 138 FGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+........ .+.+. ..+..+ +.......++.+||||||||++|||||+.+| ++|+||||++++|..
T Consensus 96 ~~~~~~~~~-~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p------~llllDEPt~~LD~~ 161 (207)
T PRK13539 96 FWAAFLGGE-ELDIA-----AALEAV--GLAPLAHLPFGYLSAGQKRRVALARLLVSNR------PIWILDEPTAALDAA 161 (207)
T ss_pred HHHHhcCCc-HHHHH-----HHHHHc--CCHHHHcCChhhcCHHHHHHHHHHHHHhcCC------CEEEEeCCcccCCHH
Confidence 643211111 01111 111111 1222334567789999999999999999998 889999999999875
Q ss_pred EE
Q psy850 218 LL 219 (280)
Q Consensus 218 ll 219 (280)
-.
T Consensus 162 ~~ 163 (207)
T PRK13539 162 AV 163 (207)
T ss_pred HH
Confidence 33
No 215
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.6e-30 Score=231.76 Aligned_cols=148 Identities=20% Similarity=0.271 Sum_probs=108.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 479999999999999999999999999999999999987 499998875 268999998776
Q ss_pred -CCcHHHHHHhCCCC-----ChhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhh
Q psy850 129 -NDTLRHNILFGEPF-----EPQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQ 200 (280)
Q Consensus 129 -~~Tv~enI~~g~~~-----~~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~ 200 (280)
..|+.+|+.++... ........+.. .+..+. .......++++.+|||||||||+|||||+.+|
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---- 168 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKKELDERVEW-----ALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKP---- 168 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHHHHHHHHHH-----HHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCC----
Confidence 46999999864311 11111111111 111110 00112346678899999999999999999998
Q ss_pred hhhhhhhccccCCCCceEEEeehhhhh
Q psy850 201 TFHFLVLLCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~illlDE~~~~~ 227 (280)
++||||||++++|..-...-.+++.
T Consensus 169 --~llllDEP~~~LD~~~~~~l~~~l~ 193 (253)
T PRK14267 169 --KILLMDEPTANIDPVGTAKIEELLF 193 (253)
T ss_pred --CEEEEcCCCccCCHHHHHHHHHHHH
Confidence 8899999999998754333333333
No 216
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.4e-30 Score=231.15 Aligned_cols=140 Identities=22% Similarity=0.299 Sum_probs=105.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC---CCC--CCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ---LRS--TAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl---~~p--~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++| .++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPF 96 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccC
Confidence 379999999999999999999999999999999997 454 589998876 279999998777
Q ss_pred CCcHHHHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPFE----PQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+.|+.+|+.++.... .....+.+. ..+..+. ....+.+.+++.+||||||||++|||||+.+|
T Consensus 97 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p------ 165 (250)
T PRK14245 97 PKSIFENVAYGLRVNGVKDNAFIRQRVE-----ETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSP------ 165 (250)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHH-----HHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 789999998653211 111111111 1111111 00113356678899999999999999999998
Q ss_pred hhhhhccccCCCCceEE
Q psy850 203 HFLVLLCPCVSLQSILL 219 (280)
Q Consensus 203 ~ll~ldep~~~l~~ill 219 (280)
++||||||++++|..-.
T Consensus 166 ~lllLDEPt~~LD~~~~ 182 (250)
T PRK14245 166 SVLLMDEPASALDPIST 182 (250)
T ss_pred CEEEEeCCCccCCHHHH
Confidence 88999999999986433
No 217
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.6e-30 Score=235.16 Aligned_cols=135 Identities=26% Similarity=0.304 Sum_probs=105.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCC--CCCCCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEA--WITNDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~--~l~~~Tv~ 133 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++ .++..|+.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 3799999999999999999999999999999999999999999999872 79999997 35678999
Q ss_pred HHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
+|+.++.. .......+.+. ..+..+ +.......++.+|||||||||+|||||+.+| ++||||||
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p------~llllDEP 167 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVD-----EALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIALRP------EIIILDES 167 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHH-----HHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHHcCC------CEEEEeCC
Confidence 99986532 11111111111 111111 2223345677899999999999999999998 88999999
Q ss_pred cCCCCc
Q psy850 211 CVSLQS 216 (280)
Q Consensus 211 ~~~l~~ 216 (280)
++++|.
T Consensus 168 t~~LD~ 173 (277)
T PRK13642 168 TSMLDP 173 (277)
T ss_pred cccCCH
Confidence 999975
No 218
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.8e-30 Score=228.55 Aligned_cols=132 Identities=30% Similarity=0.368 Sum_probs=104.7
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCCC-CcHHHHHHhCC
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWITN-DTLRHNILFGE 140 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~~-~Tv~enI~~g~ 140 (280)
++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+ ++|++|++.++. .|+.+|+.++.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 899999999999999999999999999999999999999999873 799999987765 69999998753
Q ss_pred CCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 141 PFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 141 ~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
... .......+ ...+..+ +....+++++.+|||||||||+|||||+.+| ++||||||++++|.-
T Consensus 97 ~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~lllLDEP~~gLD~~ 163 (232)
T PRK10771 97 NPGLKLNAAQREKL-----HAIARQM--GIEDLLARLPGQLSGGQRQRVALARCLVREQ------PILLLDEPFSALDPA 163 (232)
T ss_pred ccccCCCHHHHHHH-----HHHHHHc--CcHHHHhCCcccCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccCCHH
Confidence 211 11111111 1112222 2334566778899999999999999999998 889999999999874
No 219
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.4e-30 Score=230.57 Aligned_cols=138 Identities=22% Similarity=0.304 Sum_probs=105.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECCe---------------EEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREGT---------------CAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G~---------------ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+ ++|++|++.++
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 37999999999999999999999999999999999997 47999998762 68999998877
Q ss_pred CCcHHHHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPFE----PQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
..|+++|+.++.... .+...+.+.. .+..+. .......++++.+||||||||++|||||+.+|
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~-----~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p------ 166 (251)
T PRK14251 98 PFSVYDNVAYGLKIAGVKDKELIDQRVEE-----SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRP------ 166 (251)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCC------
Confidence 789999998753211 1111111111 111110 00012345677899999999999999999998
Q ss_pred hhhhhccccCCCCce
Q psy850 203 HFLVLLCPCVSLQSI 217 (280)
Q Consensus 203 ~ll~ldep~~~l~~i 217 (280)
++||||||++++|.-
T Consensus 167 ~llllDEP~~~LD~~ 181 (251)
T PRK14251 167 KVVLLDEPTSALDPI 181 (251)
T ss_pred CEEEecCCCccCCHH
Confidence 889999999999874
No 220
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=5.1e-30 Score=227.44 Aligned_cols=136 Identities=26% Similarity=0.337 Sum_probs=105.8
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------EEEEecCCCCC-CCcHHHHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------CAYVSQEAWIT-NDTLRHNIL 137 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------ig~v~Q~~~l~-~~Tv~enI~ 137 (280)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|+++|+.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~ 92 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLK 92 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHH
Confidence 35799999999999999999999999999999999999999999999873 68999998666 479999997
Q ss_pred hCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 138 FGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+........ ...+. ..+..+ +.....+.++.+||||||||++||||++.+| ++|+||||++++|.-
T Consensus 93 ~~~~~~~~~-~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p------~llllDEP~~~LD~~ 158 (223)
T TIGR03740 93 VHTTLLGLP-DSRID-----EVLNIV--DLTNTGKKKAKQFSLGMKQRLGIAIALLNHP------KLLILDEPTNGLDPI 158 (223)
T ss_pred HHHHHcCCC-HHHHH-----HHHHHc--CCcHHHhhhHhhCCHHHHHHHHHHHHHhcCC------CEEEECCCccCCCHH
Confidence 642110000 01111 111111 2223345667889999999999999999998 889999999999764
No 221
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.97 E-value=6.7e-30 Score=232.21 Aligned_cols=140 Identities=26% Similarity=0.341 Sum_probs=106.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEECCe------------------EEEEecCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST---AGKLSREGT------------------CAYVSQEAWI 127 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~---~G~I~i~G~------------------ig~v~Q~~~l 127 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|. ++|+||++.+
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 4799999999999999999999999999999999999986 499998872 6899999876
Q ss_pred CC-CcHHHHHHhCCCCChh-------hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchh
Q psy850 128 TN-DTLRHNILFGEPFEPQ-------RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQ 199 (280)
Q Consensus 128 ~~-~Tv~enI~~g~~~~~~-------~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~ 199 (280)
++ .|+++|+.++...... ...... .......+..+ +.....++++.+|||||||||+|||||+.+|
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p--- 171 (262)
T PRK09984 98 VNRLSVLENVLIGALGSTPFWRTCFSWFTREQ-KQRALQALTRV--GMVHFAHQRVSTLSGGQQQRVAIARALMQQA--- 171 (262)
T ss_pred ccCCcHHHHHHhhhcccccchhhhcccccHHH-HHHHHHHHHHc--CCHHHHhCCccccCHHHHHHHHHHHHHhcCC---
Confidence 64 6999999876321000 000000 00111122222 2333456778899999999999999999998
Q ss_pred hhhhhhhhccccCCCCce
Q psy850 200 QTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 200 ~~~~ll~ldep~~~l~~i 217 (280)
++||||||++++|.-
T Consensus 172 ---~llllDEPt~~LD~~ 186 (262)
T PRK09984 172 ---KVILADEPIASLDPE 186 (262)
T ss_pred ---CEEEecCccccCCHH
Confidence 889999999999764
No 222
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.6e-30 Score=219.49 Aligned_cols=106 Identities=36% Similarity=0.539 Sum_probs=95.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCCCC-CcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWITN-DTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l~~-~Tv~en 135 (280)
.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++. .|+.+|
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVREN 93 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHH
Confidence 4799999999999999999999999999999999999999999998873 689999987664 599988
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+. ||||||||++|||||+.+| ++|+||||++++|
T Consensus 94 ~~----------------------------------------LS~G~~qrv~laral~~~p------~illlDEPt~~LD 127 (173)
T cd03230 94 LK----------------------------------------LSGGMKQRLALAQALLHDP------ELLILDEPTSGLD 127 (173)
T ss_pred hh----------------------------------------cCHHHHHHHHHHHHHHcCC------CEEEEeCCccCCC
Confidence 73 9999999999999999998 7889999999998
Q ss_pred ceEEE
Q psy850 216 SILLM 220 (280)
Q Consensus 216 ~illl 220 (280)
.--.-
T Consensus 128 ~~~~~ 132 (173)
T cd03230 128 PESRR 132 (173)
T ss_pred HHHHH
Confidence 74433
No 223
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.8e-30 Score=234.94 Aligned_cols=140 Identities=21% Similarity=0.303 Sum_probs=107.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| .++|++|++.++
T Consensus 38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 117 (271)
T PRK14238 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPF 117 (271)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccc
Confidence 47999999999999999999999999999999999987 6999999876 279999998877
Q ss_pred CCcHHHHHHhCCCC---ChhhH-HHHHHHhhhhhhHhhC--CCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPF---EPQRY-YKTLYNCALNTDIHIL--PGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~---~~~~~-~~~~~~~~l~~~l~~l--~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
..|+++|+.++... ..... ...+. ..+..+ ..+....+++++.+|||||||||+|||||+.+|
T Consensus 118 ~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p------ 186 (271)
T PRK14238 118 PKSIYDNVTYGPKIHGIKDKKTLDEIVE-----KSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEP------ 186 (271)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHH-----HHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCC------
Confidence 77999999865211 11111 11111 111111 001223456778899999999999999999998
Q ss_pred hhhhhccccCCCCceEE
Q psy850 203 HFLVLLCPCVSLQSILL 219 (280)
Q Consensus 203 ~ll~ldep~~~l~~ill 219 (280)
++||||||++++|..-.
T Consensus 187 ~lllLDEPt~~LD~~~~ 203 (271)
T PRK14238 187 DVILMDEPTSALDPIST 203 (271)
T ss_pred CEEEEeCCCCcCCHHHH
Confidence 88999999999987433
No 224
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.97 E-value=4.2e-30 Score=234.28 Aligned_cols=137 Identities=25% Similarity=0.330 Sum_probs=105.4
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------------eEEEEecCCC--CC-
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------------TCAYVSQEAW--IT- 128 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------------~ig~v~Q~~~--l~- 128 (280)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++. ++
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 3579999999999999999999999999999999999999999999886 2799999962 33
Q ss_pred CCcHHHHHHhCCC----CChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 129 NDTLRHNILFGEP----FEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 129 ~~Tv~enI~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
..|+++|+.+... .........+ ...+..+ +.. ...+.++.+|||||||||+|||||+++| +
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~~LSgGe~qrv~laral~~~p------~ 170 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARI-----AELLDMV--GLRSEDADKLPRQLSGGQLQRINIARALAVKP------K 170 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCChhhCCHHHHHHHHHHHHHhcCC------C
Confidence 5799999965321 1111111111 1112222 221 2345677899999999999999999998 8
Q ss_pred hhhhccccCCCCce
Q psy850 204 FLVLLCPCVSLQSI 217 (280)
Q Consensus 204 ll~ldep~~~l~~i 217 (280)
+||||||++++|..
T Consensus 171 illLDEPt~~LD~~ 184 (265)
T TIGR02769 171 LIVLDEAVSNLDMV 184 (265)
T ss_pred EEEEeCCcccCCHH
Confidence 89999999999874
No 225
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.9e-30 Score=230.12 Aligned_cols=140 Identities=24% Similarity=0.321 Sum_probs=106.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC--------------eEEEEecCCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG--------------TCAYVSQEAWITN 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G--------------~ig~v~Q~~~l~~ 129 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++.+++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP 96 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc
Confidence 479999999999999999999999999999999999986 599999876 2789999988777
Q ss_pred CcHHHHHHhCCCCC---hh-hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 130 DTLRHNILFGEPFE---PQ-RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 130 ~Tv~enI~~g~~~~---~~-~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
.|+.+|+.++.... .. ...+.+..+. .... +.......++.++.+|||||||||+|||||+.+| ++|
T Consensus 97 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~-l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p------~ll 167 (249)
T PRK14253 97 MSIYENVAYGLRAQGIKDKKVLDEVVERSL--RGAA-LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEP------DVI 167 (249)
T ss_pred ccHHHHHHhHHHhcCCCchHHHHHHHHHHH--HHcC-CchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCC------CEE
Confidence 89999998753211 11 1111111110 0000 0001123456678899999999999999999998 889
Q ss_pred hhccccCCCCce
Q psy850 206 VLLCPCVSLQSI 217 (280)
Q Consensus 206 ~ldep~~~l~~i 217 (280)
|||||++++|..
T Consensus 168 llDEP~~~LD~~ 179 (249)
T PRK14253 168 LMDEPTSALDPI 179 (249)
T ss_pred EEeCCCccCCHH
Confidence 999999999764
No 226
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7e-30 Score=230.19 Aligned_cols=140 Identities=26% Similarity=0.355 Sum_probs=105.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++.++
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 479999999999999999999999999999999999874 899999876 278999998877
Q ss_pred CCcHHHHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGEPFE----PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
..|+++|+.++.... .....+.+.... ..+. +........++++.+||||||||++|||||+.+| ++
T Consensus 97 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l--~~~~-l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p------~l 167 (250)
T PRK14262 97 PMSIYDNVAFGPRIHGVKSKHKLDRIVEESL--KKAA-LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEP------EV 167 (250)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HHcC-CCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCC------CE
Confidence 789999998753111 111111111100 0010 0000112356678899999999999999999998 88
Q ss_pred hhhccccCCCCce
Q psy850 205 LVLLCPCVSLQSI 217 (280)
Q Consensus 205 l~ldep~~~l~~i 217 (280)
|+||||++++|..
T Consensus 168 lllDEP~~~LD~~ 180 (250)
T PRK14262 168 ILLDEPTSALDPI 180 (250)
T ss_pred EEEeCCccccCHH
Confidence 9999999999764
No 227
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.7e-30 Score=234.85 Aligned_cols=138 Identities=21% Similarity=0.268 Sum_probs=106.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC--------------eEEEEecCCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG--------------TCAYVSQEAWITN 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G--------------~ig~v~Q~~~l~~ 129 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++.+++
T Consensus 35 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~ 114 (276)
T PRK14271 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP 114 (276)
T ss_pred EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC
Confidence 479999999999999999999999999999999999986 699999876 2689999988777
Q ss_pred CcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhC--CCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 130 DTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHIL--PGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 130 ~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l--~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
.|+++|+.++... .......... ..+..+ .....+.+.+.+.+||||||||++|||||+.+| +
T Consensus 115 ~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p------~ 183 (276)
T PRK14271 115 MSIMDNVLAGVRAHKLVPRKEFRGVAQ-----ARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNP------E 183 (276)
T ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHH-----HHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCC------C
Confidence 8999999875321 1111111111 111111 111113345678899999999999999999998 8
Q ss_pred hhhhccccCCCCce
Q psy850 204 FLVLLCPCVSLQSI 217 (280)
Q Consensus 204 ll~ldep~~~l~~i 217 (280)
+||||||++++|.-
T Consensus 184 lllLDEPt~~LD~~ 197 (276)
T PRK14271 184 VLLLDEPTSALDPT 197 (276)
T ss_pred EEEEcCCcccCCHH
Confidence 89999999999764
No 228
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.6e-30 Score=230.56 Aligned_cols=140 Identities=25% Similarity=0.374 Sum_probs=105.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+.++ ++|+|.++| .++|++|++.++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 379999999999999999999999999999999999763 489998876 268999998877
Q ss_pred CCcHHHHHHhCCCCCh----hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGEPFEP----QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~~----~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
+.|+++|+.++..... ......+.... ..+. +.....+.+++++.+||||||||++|||||+.+| ++
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l--~~~~-l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~l 170 (253)
T PRK14261 100 PKSIYENVAYGPRIHGEKNKKTLDTIVEKSL--KGAA-LWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNP------EV 170 (253)
T ss_pred cccHHHHHHhhHHhcCCCCHHHHHHHHHHHH--HHhc-CchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCC------CE
Confidence 7799999987632110 11111111110 0010 1111123456778899999999999999999998 88
Q ss_pred hhhccccCCCCce
Q psy850 205 LVLLCPCVSLQSI 217 (280)
Q Consensus 205 l~ldep~~~l~~i 217 (280)
++||||++++|..
T Consensus 171 llLDEP~~gLD~~ 183 (253)
T PRK14261 171 ILMDEPCSALDPI 183 (253)
T ss_pred EEEeCCcccCCHH
Confidence 9999999999874
No 229
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.1e-30 Score=229.91 Aligned_cols=138 Identities=22% Similarity=0.321 Sum_probs=104.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC--C---CCceEEECCe---------------EEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR--S---TAGKLSREGT---------------CAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~--p---~~G~I~i~G~---------------ig~v~Q~~~l~ 128 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|. ++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 37999999999999999999999999999999999986 4 6899998762 78999998776
Q ss_pred C-CcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCCC--CCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhh
Q psy850 129 N-DTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPG--GDQTEIGERGINLSGGQKQRVALARALYSNSFEQQT 201 (280)
Q Consensus 129 ~-~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~--g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~ 201 (280)
. .|+++|+.++... ......+.+. ..+..+.. ......+..+.+||||||||++|||||+.+|
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p----- 167 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNRSEADEIVE-----SSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKP----- 167 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCHHHHHHHHH-----HHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCC-----
Confidence 5 6999999864211 1111111111 11111110 0112345567889999999999999999998
Q ss_pred hhhhhhccccCCCCce
Q psy850 202 FHFLVLLCPCVSLQSI 217 (280)
Q Consensus 202 ~~ll~ldep~~~l~~i 217 (280)
++||||||++++|.-
T Consensus 168 -~llllDEP~~gLD~~ 182 (252)
T PRK14256 168 -EVILMDEPASALDPI 182 (252)
T ss_pred -CEEEEcCCcccCCHH
Confidence 889999999999774
No 230
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.97 E-value=5.2e-30 Score=229.42 Aligned_cols=150 Identities=19% Similarity=0.119 Sum_probs=106.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEECCe--------------EEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL--RSTAGKLSREGT--------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~--~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~T 131 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|. ++|++|++.++ ..|
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS 93 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence 4799999999999999999999999999999999995 799999999872 68999998766 469
Q ss_pred HHHHHHhCCCCCh----h-hHH-HHHHHhhhhhhHhhCCCCCc-hhhccCCC-CCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 132 LRHNILFGEPFEP----Q-RYY-KTLYNCALNTDIHILPGGDQ-TEIGERGI-NLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 132 v~enI~~g~~~~~----~-~~~-~~~~~~~l~~~l~~l~~g~~-~~i~~~~~-~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
+++|+.+...... . ... .... ......+..+ +.. ...++++. +|||||||||+|||||+.+| +
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p------~ 164 (243)
T TIGR01978 94 NLEFLRSALNARRSARGEEPLDLLDFL-KLLKAKLALL--GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP------K 164 (243)
T ss_pred HHHHHHHHHHHhhcccccccccHHHHH-HHHHHHHHHc--CCchhhcccccccCcCHHHHHHHHHHHHHhcCC------C
Confidence 9999876421100 0 000 0000 0111112211 121 12344555 49999999999999999998 8
Q ss_pred hhhhccccCCCCceEEEeehhhhh
Q psy850 204 FLVLLCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 204 ll~ldep~~~l~~illlDE~~~~~ 227 (280)
+||||||++++|..-.-.-.+++.
T Consensus 165 llllDEPt~~LD~~~~~~l~~~l~ 188 (243)
T TIGR01978 165 LAILDEIDSGLDIDALKIVAEGIN 188 (243)
T ss_pred EEEecCCcccCCHHHHHHHHHHHH
Confidence 899999999998754433334433
No 231
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.8e-30 Score=240.85 Aligned_cols=139 Identities=25% Similarity=0.294 Sum_probs=103.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC----CCCceEEECCe-----------------EEEEecCCC-
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR----STAGKLSREGT-----------------CAYVSQEAW- 126 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~----p~~G~I~i~G~-----------------ig~v~Q~~~- 126 (280)
.+|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+ ++||||++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 47999999999999999999999999999999999997 48999999872 799999973
Q ss_pred -C-CCCcHHHHHHhCC----CCChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchh
Q psy850 127 -I-TNDTLRHNILFGE----PFEPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQ 199 (280)
Q Consensus 127 -l-~~~Tv~enI~~g~----~~~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~ 199 (280)
+ +..|+.+++.... ..........+. ..+..+.-.. ...+++++.+|||||||||+|||||+.+|
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~-----~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P--- 172 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAI-----DLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRP--- 172 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCC---
Confidence 3 3468877764321 111111111111 1122111111 23456789999999999999999999998
Q ss_pred hhhhhhhhccccCCCCceE
Q psy850 200 QTFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 200 ~~~~ll~ldep~~~l~~il 218 (280)
++||+||||+++|...
T Consensus 173 ---~llilDEPts~LD~~~ 188 (326)
T PRK11022 173 ---KLLIADEPTTALDVTI 188 (326)
T ss_pred ---CEEEEeCCCCCCCHHH
Confidence 8899999999998653
No 232
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.8e-30 Score=231.70 Aligned_cols=138 Identities=24% Similarity=0.335 Sum_probs=104.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 479999999999999999999999999999999999974 699999876 278999998766
Q ss_pred -CCcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCCC--CCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhh
Q psy850 129 -NDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPG--GDQTEIGERGINLSGGQKQRVALARALYSNSFEQQT 201 (280)
Q Consensus 129 -~~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~--g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~ 201 (280)
..|+++|+.++... ......+.+. ..+..+.. ........++.+|||||||||+|||||+.+|
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p----- 167 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNKKDLDELVE-----KSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEP----- 167 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC-----
Confidence 46999999864311 1111111111 11111100 0123446677899999999999999999998
Q ss_pred hhhhhhccccCCCCce
Q psy850 202 FHFLVLLCPCVSLQSI 217 (280)
Q Consensus 202 ~~ll~ldep~~~l~~i 217 (280)
++||||||++++|..
T Consensus 168 -~llllDEPt~~LD~~ 182 (258)
T PRK14241 168 -DVLLMDEPCSALDPI 182 (258)
T ss_pred -CEEEEcCCCccCCHH
Confidence 889999999999864
No 233
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.97 E-value=2.6e-30 Score=229.99 Aligned_cols=152 Identities=24% Similarity=0.354 Sum_probs=110.7
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEECCe----------EEEEecCCCCCC-CcHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR---STAGKLSREGT----------CAYVSQEAWITN-DTLR 133 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~---p~~G~I~i~G~----------ig~v~Q~~~l~~-~Tv~ 133 (280)
+.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|. ++|++|++.+++ .|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 458999999999999999999999999999999999999 99999999873 799999987664 5999
Q ss_pred HHHHhCCCCCh-hhHHHHHHHhhhhh-hHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 134 HNILFGEPFEP-QRYYKTLYNCALNT-DIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 134 enI~~g~~~~~-~~~~~~~~~~~l~~-~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
+|+.++..... .............. .+..+ +......+.+.+|||||||||+|||||+.+| ++|++|||+
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~p------~illlDEP~ 171 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQLLWDP------KVLILDEPT 171 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHHHhCC------CEEEEeCCC
Confidence 99987422110 00000000000011 11111 2223345567889999999999999999998 889999999
Q ss_pred CCCCceEEEeehhhhh
Q psy850 212 VSLQSILLMEEVNVYV 227 (280)
Q Consensus 212 ~~l~~illlDE~~~~~ 227 (280)
+++|..-.-.-.+++.
T Consensus 172 ~gLD~~~~~~~~~~l~ 187 (226)
T cd03234 172 SGLDSFTALNLVSTLS 187 (226)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9998754443334443
No 234
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.5e-30 Score=220.47 Aligned_cols=105 Identities=38% Similarity=0.508 Sum_probs=94.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC---------------eEEEEecCCCCC-CCcH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---------------TCAYVSQEAWIT-NDTL 132 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G---------------~ig~v~Q~~~l~-~~Tv 132 (280)
.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|+
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTV 93 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCH
Confidence 479999999999999999999999999999999999999999999876 267999998665 4699
Q ss_pred HHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 133 RHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 133 ~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
++|+.+. ||||||||++|||||+.+| ++++||||+.
T Consensus 94 ~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p------~llilDEP~~ 129 (178)
T cd03229 94 LENIALG--------------------------------------LSGGQQQRVALARALAMDP------DVLLLDEPTS 129 (178)
T ss_pred HHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC------CEEEEeCCcc
Confidence 8887542 9999999999999999998 7889999999
Q ss_pred CCCce
Q psy850 213 SLQSI 217 (280)
Q Consensus 213 ~l~~i 217 (280)
++|.-
T Consensus 130 ~LD~~ 134 (178)
T cd03229 130 ALDPI 134 (178)
T ss_pred cCCHH
Confidence 99874
No 235
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.2e-30 Score=219.30 Aligned_cols=104 Identities=38% Similarity=0.567 Sum_probs=94.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++.|+.||
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~ 95 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIREN 95 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHH
Confidence 4799999999999999999999999999999999999999999999873 689999987777788877
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+ |||||||||+|||||+.+| ++|+||||+.++|
T Consensus 96 l-----------------------------------------LS~G~~~rl~la~al~~~p------~llllDEP~~gLD 128 (171)
T cd03228 96 I-----------------------------------------LSGGQRQRIAIARALLRDP------PILILDEATSALD 128 (171)
T ss_pred h-----------------------------------------hCHHHHHHHHHHHHHhcCC------CEEEEECCCcCCC
Confidence 6 9999999999999999998 8899999999998
Q ss_pred ceEE
Q psy850 216 SILL 219 (280)
Q Consensus 216 ~ill 219 (280)
..-.
T Consensus 129 ~~~~ 132 (171)
T cd03228 129 PETE 132 (171)
T ss_pred HHHH
Confidence 7443
No 236
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=1.7e-29 Score=224.04 Aligned_cols=137 Identities=23% Similarity=0.259 Sum_probs=104.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC--C-------------------eEEEEecCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE--G-------------------TCAYVSQEAWI 127 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~--G-------------------~ig~v~Q~~~l 127 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ | .++|++|++.+
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 47999999999999999999999999999999999999999999986 3 26899999866
Q ss_pred C-CCcHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCch-hhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 128 T-NDTLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQT-EIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 128 ~-~~Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~-~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+ ..|+++|+.+... .......+.+ ...+..+ +... ....++.+||||||||++|||||+.+|
T Consensus 102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~laral~~~p------ 168 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGVPREAARARA-----RELLARL--NIPERLWHLPPATFSGGEQQRVNIARGFIADY------ 168 (224)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhhhCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 5 5699999976321 1111111111 1112222 1111 224567889999999999999999998
Q ss_pred hhhhhccccCCCCceE
Q psy850 203 HFLVLLCPCVSLQSIL 218 (280)
Q Consensus 203 ~ll~ldep~~~l~~il 218 (280)
++|++|||++++|..-
T Consensus 169 ~llllDEPt~~LD~~~ 184 (224)
T TIGR02324 169 PILLLDEPTASLDAAN 184 (224)
T ss_pred CEEEEcCCcccCCHHH
Confidence 8899999999998743
No 237
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6e-30 Score=230.96 Aligned_cols=139 Identities=23% Similarity=0.348 Sum_probs=105.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|.+||+++|+||||||||||+++|+|+.+ |++|+|.++| .++|++|++.++
T Consensus 19 ~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 98 (251)
T PRK14244 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF 98 (251)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccc
Confidence 47999999999999999999999999999999999986 4799999876 268999998877
Q ss_pred CCcHHHHHHhCCCCC-----hhhHHHHHHHhhhhhhHhhCCCC--CchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhh
Q psy850 129 NDTLRHNILFGEPFE-----PQRYYKTLYNCALNTDIHILPGG--DQTEIGERGINLSGGQKQRVALARALYSNSFEQQT 201 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~-----~~~~~~~~~~~~l~~~l~~l~~g--~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~ 201 (280)
+.|+.+|+.++.... .......+. ..+..+.-. ..+.++.++.+|||||||||+|||||+.+|
T Consensus 99 ~~tv~~ni~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p----- 168 (251)
T PRK14244 99 PKSIYDNVAYGPKLHGLAKNKKKLDEIVE-----KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKP----- 168 (251)
T ss_pred cCCHHHHHHHHHHhcCCCCCHHHHHHHHH-----HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCC-----
Confidence 779999998752110 111111111 111111100 012345677889999999999999999998
Q ss_pred hhhhhhccccCCCCceE
Q psy850 202 FHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 202 ~~ll~ldep~~~l~~il 218 (280)
++|+||||++++|..-
T Consensus 169 -~llllDEPt~~LD~~~ 184 (251)
T PRK14244 169 -TMLLMDEPCSALDPVA 184 (251)
T ss_pred -CEEEEeCCCccCCHHH
Confidence 8899999999997743
No 238
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.9e-30 Score=235.12 Aligned_cols=139 Identities=24% Similarity=0.301 Sum_probs=106.1
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWI 127 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l 127 (280)
..+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++| .++|++|++.+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 458999999999999999999999999999999999864 4999999876 27899999887
Q ss_pred CCCcHHHHHHhCCCC---C-hhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhh
Q psy850 128 TNDTLRHNILFGEPF---E-PQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQT 201 (280)
Q Consensus 128 ~~~Tv~enI~~g~~~---~-~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~ 201 (280)
++.|+.+|+.++... . .......+.. .+..+. ........+++..|||||||||+|||||+.+|
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~-----~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p----- 201 (286)
T PRK14275 132 FPKSIFDNIAYGPRLHGINDKKQLEEIVEK-----SLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEP----- 201 (286)
T ss_pred CccCHHHHHHhHHHhcCCCcHHHHHHHHHH-----HHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCC-----
Confidence 777999999875321 1 1111111111 111110 01123346678899999999999999999998
Q ss_pred hhhhhhccccCCCCce
Q psy850 202 FHFLVLLCPCVSLQSI 217 (280)
Q Consensus 202 ~~ll~ldep~~~l~~i 217 (280)
++||||||++++|..
T Consensus 202 -~lllLDEPt~gLD~~ 216 (286)
T PRK14275 202 -EILLLDEPTSALDPK 216 (286)
T ss_pred -CEEEEeCCCccCCHH
Confidence 889999999999864
No 239
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=229.12 Aligned_cols=141 Identities=23% Similarity=0.322 Sum_probs=105.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC--C---CCceEEECCe---------------EEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR--S---TAGKLSREGT---------------CAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~--p---~~G~I~i~G~---------------ig~v~Q~~~l~ 128 (280)
.+|+++||+|.+||+++|+||||||||||+++|+|+.+ | ++|+|.++|. ++|++|++.++
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF 98 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccC
Confidence 47999999999999999999999999999999999875 4 5899988762 78999998777
Q ss_pred CCcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
+.|+++|+.++... ........+... + .... +..........++.+|||||||||+|||||+.+| ++
T Consensus 99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~-l-~~~~-l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p------~l 169 (252)
T PRK14255 99 PFSIYENVIYGLRLAGVKDKAVLDEAVETS-L-KQAA-IWDEVKDHLHESALSLSGGQQQRVCIARVLAVKP------DV 169 (252)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHHH-H-HHcC-CccchhhHHhcCcccCCHHHHHHHHHHHHHhcCC------CE
Confidence 78999999864211 111111111111 0 0010 0001123456678899999999999999999998 88
Q ss_pred hhhccccCCCCceE
Q psy850 205 LVLLCPCVSLQSIL 218 (280)
Q Consensus 205 l~ldep~~~l~~il 218 (280)
||||||++++|..-
T Consensus 170 lllDEPt~~LD~~~ 183 (252)
T PRK14255 170 ILLDEPTSALDPIS 183 (252)
T ss_pred EEEcCCCccCCHHH
Confidence 99999999998753
No 240
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=1.1e-29 Score=230.32 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=104.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------------EEEEecCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------------CAYVSQEAW 126 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------------ig~v~Q~~~ 126 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR 99 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence 4799999999999999999999999999999999999999999988762 689999973
Q ss_pred --CC-CCcHHHHHHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 127 --IT-NDTLRHNILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 127 --l~-~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
++ ..|+.+|+.+... ........ ... .....+..+.. ..+.+++++.+|||||||||+|||||+.+|
T Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~-~~~~~l~~~~l-~~~~~~~~~~~LS~Gq~qrl~laral~~~p------ 170 (258)
T PRK11701 100 DGLRMQVSAGGNIGERLMAVGARHYGD-IRA-TAGDWLERVEI-DAARIDDLPTTFSGGMQQRLQIARNLVTHP------ 170 (258)
T ss_pred cccCccccHHHHHHHHHHHhccCcHHH-HHH-HHHHHHHHcCC-ChhHHhCCCccCCHHHHHHHHHHHHHhcCC------
Confidence 22 4588888864210 00000000 110 11122233321 113456788899999999999999999998
Q ss_pred hhhhhccccCCCCceE
Q psy850 203 HFLVLLCPCVSLQSIL 218 (280)
Q Consensus 203 ~ll~ldep~~~l~~il 218 (280)
++|+||||++++|...
T Consensus 171 ~llllDEPt~~LD~~~ 186 (258)
T PRK11701 171 RLVFMDEPTGGLDVSV 186 (258)
T ss_pred CEEEEcCCcccCCHHH
Confidence 8899999999998743
No 241
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.2e-30 Score=229.78 Aligned_cols=140 Identities=22% Similarity=0.310 Sum_probs=104.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST-----AGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~-----~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++| .++|++|++.++
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 4799999999999999999999999999999999999874 79999876 278999998776
Q ss_pred C-CcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 129 N-DTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 129 ~-~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
. .|+.+|+.++... ..+...+.+... ...+... .......+.++.+||||||||++|||||+.+| +
T Consensus 98 ~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~--l~~~~l~-~~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~ 168 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRDRDHLMEVAERS--LRGAALW-DEVKDRLKTPATGLSGGQQQRLCIARALAVEP------E 168 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHcCcc-hhhhhhhcCCcccCCHHHHHHHHHHHHHhcCC------C
Confidence 5 6999999864311 111111111110 0001000 01112345667889999999999999999998 8
Q ss_pred hhhhccccCCCCce
Q psy850 204 FLVLLCPCVSLQSI 217 (280)
Q Consensus 204 ll~ldep~~~l~~i 217 (280)
+|+||||++++|..
T Consensus 169 llllDEP~~~LD~~ 182 (252)
T PRK14272 169 ILLMDEPTSALDPA 182 (252)
T ss_pred EEEEeCCCccCCHH
Confidence 89999999999764
No 242
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=232.64 Aligned_cols=136 Identities=29% Similarity=0.362 Sum_probs=104.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------eEEEEecCCCC---CCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------TCAYVSQEAWI---TNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------~ig~v~Q~~~l---~~~Tv~en 135 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+ +..++++|
T Consensus 21 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~ 100 (272)
T PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDV 100 (272)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhh
Confidence 479999999999999999999999999999999999999999999987 38999999754 34478888
Q ss_pred HHhCCCC-------ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 136 ILFGEPF-------EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 136 I~~g~~~-------~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
+.++... .......... ..+..+ +.....++++.+||||||||++|||||+.+| ++|+||
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--gl~~~~~~~~~~LSgG~~qrv~laraL~~~p------~llllD 167 (272)
T PRK15056 101 VMMGRYGHMGWLRRAKKRDRQIVT-----AALARV--DMVEFRHRQIGELSGGQKKRVFLARAIAQQG------QVILLD 167 (272)
T ss_pred eecccccccccccCCCHHHHHHHH-----HHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhcCC------CEEEEe
Confidence 8654210 0011111111 111211 2223345678899999999999999999998 889999
Q ss_pred cccCCCCce
Q psy850 209 CPCVSLQSI 217 (280)
Q Consensus 209 ep~~~l~~i 217 (280)
||++++|..
T Consensus 168 EPt~~LD~~ 176 (272)
T PRK15056 168 EPFTGVDVK 176 (272)
T ss_pred CCCccCCHH
Confidence 999999764
No 243
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.96 E-value=1.2e-29 Score=239.16 Aligned_cols=146 Identities=22% Similarity=0.341 Sum_probs=107.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEECC-----------------eEEEEecCC--C
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST---AGKLSREG-----------------TCAYVSQEA--W 126 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~---~G~I~i~G-----------------~ig~v~Q~~--~ 126 (280)
.+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++| .++||||++ .
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 109 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS 109 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence 4799999999999999999999999999999999999996 99999987 279999997 3
Q ss_pred CC-CCcHHHHHHhCC----CCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhh
Q psy850 127 IT-NDTLRHNILFGE----PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQT 201 (280)
Q Consensus 127 l~-~~Tv~enI~~g~----~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~ 201 (280)
+. ..|+.+++.... ..........+.+. + ..+ .++. ....+++++.+|||||||||+|||||+.+|
T Consensus 110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~-L-~~v-gL~~-~~~~~~~~p~~LSgG~~QRv~IArAL~~~P----- 180 (330)
T PRK09473 110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM-L-DAV-KMPE-ARKRMKMYPHEFSGGMRQRVMIAMALLCRP----- 180 (330)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH-H-HHc-CCCC-hHHHhcCCcccCCHHHHHHHHHHHHHHcCC-----
Confidence 33 568888875421 11111111111111 1 111 1111 123356789999999999999999999998
Q ss_pred hhhhhhccccCCCCceEEEeehh
Q psy850 202 FHFLVLLCPCVSLQSILLMEEVN 224 (280)
Q Consensus 202 ~~ll~ldep~~~l~~illlDE~~ 224 (280)
++||+|||++++|.....+-.+
T Consensus 181 -~llilDEPts~LD~~~~~~i~~ 202 (330)
T PRK09473 181 -KLLIADEPTTALDVTVQAQIMT 202 (330)
T ss_pred -CEEEEeCCCccCCHHHHHHHHH
Confidence 8899999999998754433333
No 244
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.3e-29 Score=220.87 Aligned_cols=141 Identities=25% Similarity=0.295 Sum_probs=106.3
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------EEEEecCCCC-CCCcHHHHHHhCC
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------CAYVSQEAWI-TNDTLRHNILFGE 140 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------ig~v~Q~~~l-~~~Tv~enI~~g~ 140 (280)
+.++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++|++|++.+ +..|+++|+.+..
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~ 95 (195)
T PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWS 95 (195)
T ss_pred EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHH
Confidence 33599999999999999999999999999999999999999999883 6899998644 5789999998743
Q ss_pred CCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEEE
Q psy850 141 PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220 (280)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~illl 220 (280)
..... ...+. ..+..+ +......+++.+||||||||++||||++.+| ++|+||||++++|.....
T Consensus 96 ~~~~~--~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~~rl~la~al~~~p------~~lllDEP~~~LD~~~~~ 160 (195)
T PRK13541 96 EIYNS--AETLY-----AAIHYF--KLHDLLDEKCYSLSSGMQKIVAIARLIACQS------DLWLLDEVETNLSKENRD 160 (195)
T ss_pred Hhccc--HHHHH-----HHHHHc--CCHhhhccChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccCCHHHHH
Confidence 21110 01111 111111 1223345667889999999999999999998 889999999999876543
Q ss_pred eehhhh
Q psy850 221 EEVNVY 226 (280)
Q Consensus 221 DE~~~~ 226 (280)
.-.+++
T Consensus 161 ~l~~~l 166 (195)
T PRK13541 161 LLNNLI 166 (195)
T ss_pred HHHHHH
Confidence 333433
No 245
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-30 Score=228.92 Aligned_cols=136 Identities=28% Similarity=0.309 Sum_probs=106.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------eEEEEecCCCCC-CCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------TCAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------~ig~v~Q~~~l~-~~Tv~en 135 (280)
.+++||||++++||+++|+|||||||||+||+|++++.|++|.|.++| +||.++-+..++ .+|++||
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEn 95 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAREN 95 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHH
Confidence 479999999999999999999999999999999999999999999987 378888665555 7799999
Q ss_pred HHhCCC-CCh--hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGEP-FEP--QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~~-~~~--~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
|.|... +.. ........ .....+ +....++++...||-||||||+|||||+++| +++++||||+
T Consensus 96 l~~Fa~L~~l~~~~~kari~-----~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P------~i~vlDEP~s 162 (245)
T COG4555 96 LKYFARLNGLSRKEIKARIA-----ELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDP------SILVLDEPTS 162 (245)
T ss_pred HHHHHHHhhhhhhHHHHHHH-----HHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCC------CeEEEcCCCC
Confidence 986321 111 11111111 111111 3445667888899999999999999999999 7889999999
Q ss_pred CCCce
Q psy850 213 SLQSI 217 (280)
Q Consensus 213 ~l~~i 217 (280)
++|-.
T Consensus 163 GLDi~ 167 (245)
T COG4555 163 GLDIR 167 (245)
T ss_pred CccHH
Confidence 99753
No 246
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=8.5e-30 Score=251.41 Aligned_cols=140 Identities=23% Similarity=0.305 Sum_probs=107.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------------eEEEEecCCCCC-CCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------------TCAYVSQEAWIT-NDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--------------~ig~v~Q~~~l~-~~Tv~ 133 (280)
.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.++ ..|++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIA 97 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHH
Confidence 479999999999999999999999999999999999999999999986 279999997655 57999
Q ss_pred HHHHhCCCCCh--hhH-HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEPFEP--QRY-YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~~~~--~~~-~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
+|+.++..... ... ...... .....+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||
T Consensus 98 e~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p------~lllLDEP 168 (501)
T PRK10762 98 ENIFLGREFVNRFGRIDWKKMYA-EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAKVLSFES------KVIIMDEP 168 (501)
T ss_pred HHhhhccccccccCccCHHHHHH-HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHhcCC------CEEEEeCC
Confidence 99988643210 000 000000 111122222 2223345677899999999999999999998 88999999
Q ss_pred cCCCCce
Q psy850 211 CVSLQSI 217 (280)
Q Consensus 211 ~~~l~~i 217 (280)
|+++|..
T Consensus 169 t~~LD~~ 175 (501)
T PRK10762 169 TDALTDT 175 (501)
T ss_pred cCCCCHH
Confidence 9999873
No 247
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=230.11 Aligned_cols=142 Identities=22% Similarity=0.290 Sum_probs=106.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++| .++|++|++.++
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 379999999999999999999999999999999999985 489999876 278999998877
Q ss_pred CCcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
+.|+++|+.++... ......+....+.....+ ........++++.+|||||||||+|||||+.+| ++
T Consensus 101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l---~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~l 171 (259)
T PRK14260 101 PMSIYENVAYGVRISAKLPQADLDEIVESALKGAAL---WQEVKDKLNKSALGLSGGQQQRLCIARALAIKP------KV 171 (259)
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC---cchhhhHhcCCcccCCHHHHHHHHHHHHHhcCC------CE
Confidence 79999999865211 111111111111100000 000112345677899999999999999999998 88
Q ss_pred hhhccccCCCCceEE
Q psy850 205 LVLLCPCVSLQSILL 219 (280)
Q Consensus 205 l~ldep~~~l~~ill 219 (280)
|+||||++++|..-.
T Consensus 172 llLDEPt~~LD~~~~ 186 (259)
T PRK14260 172 LLMDEPCSALDPIAT 186 (259)
T ss_pred EEEcCCCccCCHHHH
Confidence 999999999986433
No 248
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.2e-29 Score=235.23 Aligned_cols=137 Identities=23% Similarity=0.297 Sum_probs=105.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------------eEEEEecCCC--CC-C
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------------TCAYVSQEAW--IT-N 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------------~ig~v~Q~~~--l~-~ 129 (280)
.+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +++||||++. +. .
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 479999999999999999999999999999999999999999999987 2799999973 33 4
Q ss_pred CcHHHHHHhCC----CCChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 130 DTLRHNILFGE----PFEPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 130 ~Tv~enI~~g~----~~~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
.++.+++.... ..........+. ..+..+ +. ...+++++.+|||||||||+|||||+.+| ++
T Consensus 109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P------~l 175 (327)
T PRK11308 109 KKVGQILEEPLLINTSLSAAERREKAL-----AMMAKV--GLRPEHYDRYPHMFSGGQRQRIAIARALMLDP------DV 175 (327)
T ss_pred cCHHHHHHHHHHHccCCCHHHHHHHHH-----HHHHHC--CCChHHhcCCCccCCHHHHHHHHHHHHHHcCC------CE
Confidence 69998886421 111111111111 112221 11 12456789999999999999999999998 88
Q ss_pred hhhccccCCCCceE
Q psy850 205 LVLLCPCVSLQSIL 218 (280)
Q Consensus 205 l~ldep~~~l~~il 218 (280)
||+||||+++|...
T Consensus 176 LilDEPts~LD~~~ 189 (327)
T PRK11308 176 VVADEPVSALDVSV 189 (327)
T ss_pred EEEECCCccCCHHH
Confidence 99999999998653
No 249
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=2.2e-29 Score=249.27 Aligned_cols=135 Identities=28% Similarity=0.386 Sum_probs=107.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCC-CCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWIT-NDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~Tv~ 133 (280)
.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|. ++|++|++.++ ..|++
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 104 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVK 104 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHH
Confidence 4799999999999999999999999999999999999999999999872 78999998655 57999
Q ss_pred HHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 134 HNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 134 enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
+|+.++..... ...+.+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++|||||||++
T Consensus 105 e~l~~~~~~~~-~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p------~lllLDEPt~~ 170 (510)
T PRK15439 105 ENILFGLPKRQ-ASMQKMK-----QLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRDS------RILILDEPTAS 170 (510)
T ss_pred HHhhcccccch-HHHHHHH-----HHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcCC------CEEEEECCCCC
Confidence 99988643211 1111111 112222 2223345678899999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|+.
T Consensus 171 LD~~ 174 (510)
T PRK15439 171 LTPA 174 (510)
T ss_pred CCHH
Confidence 9864
No 250
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.96 E-value=1.6e-29 Score=226.74 Aligned_cols=136 Identities=33% Similarity=0.415 Sum_probs=106.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------eEEEEecCCCCCC-CcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------TCAYVSQEAWITN-DTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------~ig~v~Q~~~l~~-~Tv~enI 136 (280)
.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+++ .|+.+|+
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 93 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI 93 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence 479999999999999999999999999999999999999999999876 2799999987774 6999999
Q ss_pred HhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.+..... .....+.+ ...+..+ +.....++.+.+||+||+||++|||||+.+| ++++||||+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~p------~llllDEP~~~ 160 (237)
T TIGR00968 94 AFGLEIRKHPKAKIKARV-----EELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVEP------QVLLLDEPFGA 160 (237)
T ss_pred HhHHHhcCCCHHHHHHHH-----HHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCccc
Confidence 8754211 11111111 1222222 2223345667889999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|.-
T Consensus 161 LD~~ 164 (237)
T TIGR00968 161 LDAK 164 (237)
T ss_pred CCHH
Confidence 9763
No 251
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-29 Score=250.33 Aligned_cols=135 Identities=27% Similarity=0.353 Sum_probs=106.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEECCe--------------EEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS--TAGKLSREGT--------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p--~~G~I~i~G~--------------ig~v~Q~~~l~-~~T 131 (280)
.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|. ++|++|++.++ ..|
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 98 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELS 98 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCc
Confidence 479999999999999999999999999999999999996 8999999872 79999998665 579
Q ss_pred HHHHHHhCCCCC------hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 132 LRHNILFGEPFE------PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 132 v~enI~~g~~~~------~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
+++|+.++.... .......+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al~~~p------~ll 165 (506)
T PRK13549 99 VLENIFLGNEITPGGIMDYDAMYLRA-----QKLLAQL--KLDINPATPVGNLGLGQQQLVEIAKALNKQA------RLL 165 (506)
T ss_pred HHHHhhhcccccccCCcCHHHHHHHH-----HHHHHHc--CCCCCcccchhhCCHHHHHHHHHHHHHhcCC------CEE
Confidence 999998864321 11111111 1122222 2223345677899999999999999999998 889
Q ss_pred hhccccCCCCc
Q psy850 206 VLLCPCVSLQS 216 (280)
Q Consensus 206 ~ldep~~~l~~ 216 (280)
|||||++++|.
T Consensus 166 lLDEPt~~LD~ 176 (506)
T PRK13549 166 ILDEPTASLTE 176 (506)
T ss_pred EEeCCCCCCCH
Confidence 99999999985
No 252
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-29 Score=231.60 Aligned_cols=151 Identities=25% Similarity=0.344 Sum_probs=109.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++.++
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~ 113 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF 113 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence 479999999999999999999999999999999999863 589998876 278999998777
Q ss_pred CCcHHHHHHhCCCCC--hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 129 NDTLRHNILFGEPFE--PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~--~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
+.|+.+|+.++.... .......+.... .... +.........+++.+|||||||||+|||||+.+| ++||
T Consensus 114 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~l--~~~~-l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p------~lll 184 (274)
T PRK14265 114 PKSIYENIAFAPRANGYKGNLDELVEDSL--RRAA-IWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKP------DVLL 184 (274)
T ss_pred cccHHHHHHhHHHhcCchHHHHHHHHHHH--HHcc-cchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCC------CEEE
Confidence 779999998753211 001111111100 0000 0001112345678899999999999999999998 8899
Q ss_pred hccccCCCCceEEEeehhhhhc
Q psy850 207 LLCPCVSLQSILLMEEVNVYVS 228 (280)
Q Consensus 207 ldep~~~l~~illlDE~~~~~~ 228 (280)
||||++++|..-.-.-.+++..
T Consensus 185 LDEPt~~LD~~~~~~l~~~L~~ 206 (274)
T PRK14265 185 MDEPCSALDPISTRQVEELCLE 206 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHH
Confidence 9999999987544444444443
No 253
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.2e-29 Score=226.83 Aligned_cols=136 Identities=27% Similarity=0.349 Sum_probs=106.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+++++||+|++|++++|+||||||||||+++|+|+++|+.|+|.++|. ++|++|++.++ ..|+.+|+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl 93 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENI 93 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHH
Confidence 4799999999999999999999999999999999999999999999873 79999998776 46999999
Q ss_pred HhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.++.... .......+ ...+..+ +....+.+++..||||||||++|||||+.+| ++|+||||+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~p------~llllDEP~~g 160 (232)
T cd03300 94 AFGLRLKKLPKAEIKERV-----AEALDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNEP------KVLLLDEPLGA 160 (232)
T ss_pred HHHHHhcCCCHHHHHHHH-----HHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCccc
Confidence 8643211 11111111 1112211 2233456677899999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|..
T Consensus 161 LD~~ 164 (232)
T cd03300 161 LDLK 164 (232)
T ss_pred CCHH
Confidence 9763
No 254
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=5.8e-30 Score=221.04 Aligned_cols=126 Identities=27% Similarity=0.414 Sum_probs=103.0
Q ss_pred ccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------------eEEEEecCC-
Q psy850 61 KAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------------TCAYVSQEA- 125 (280)
Q Consensus 61 ~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--------------~ig~v~Q~~- 125 (280)
+++++....+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++
T Consensus 6 ~~~~l~~~~~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (182)
T cd03215 6 EVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRK 85 (182)
T ss_pred EEeccEEEeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcc
Confidence 34444333389999999999999999999999999999999999999999999987 278999984
Q ss_pred ---CCCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 126 ---WITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 126 ---~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
.++..|++||+.++.. ||||||||++|||||+.+|
T Consensus 86 ~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~~p------ 123 (182)
T cd03215 86 REGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLARDP------ 123 (182)
T ss_pred cCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHccCC------
Confidence 3345799999875310 9999999999999999998
Q ss_pred hhhhhccccCCCCceEEEeehhhhhc
Q psy850 203 HFLVLLCPCVSLQSILLMEEVNVYVS 228 (280)
Q Consensus 203 ~ll~ldep~~~l~~illlDE~~~~~~ 228 (280)
++|+||||++++|..-.-.-.+++.+
T Consensus 124 ~llllDEP~~~LD~~~~~~l~~~l~~ 149 (182)
T cd03215 124 RVLILDEPTRGVDVGAKAEIYRLIRE 149 (182)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 78899999999987544433344433
No 255
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-29 Score=227.22 Aligned_cols=149 Identities=19% Similarity=0.316 Sum_probs=108.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-----STAGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-----p~~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+.. |++|+|.++| .++|++|++.++
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPF 96 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccC
Confidence 47999999999999999999999999999999999864 4899999877 279999999888
Q ss_pred CCcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
+.|+.+|+.++... ......+.+........+ ........++++.+||||||||++|||||+.+| ++
T Consensus 97 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l---~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p------~l 167 (250)
T PRK14266 97 PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAAL---WDEVKDKLDKSALGLSGGQQQRLCIARTIAVSP------EV 167 (250)
T ss_pred cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCC---chhHHHHHhCCcccCCHHHHHHHHHHHHHHcCC------CE
Confidence 78999999865311 111111111111100000 000112345667889999999999999999998 88
Q ss_pred hhhccccCCCCceEEEeehhhh
Q psy850 205 LVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 205 l~ldep~~~l~~illlDE~~~~ 226 (280)
|+||||++++|..-...-.+++
T Consensus 168 lllDEP~~gLD~~~~~~l~~~l 189 (250)
T PRK14266 168 ILMDEPCSALDPISTTKIEDLI 189 (250)
T ss_pred EEEcCCCccCCHHHHHHHHHHH
Confidence 9999999999875333333333
No 256
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.8e-29 Score=226.25 Aligned_cols=135 Identities=30% Similarity=0.421 Sum_probs=107.2
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------eEEEEecCCCCC-CCcHHHHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------TCAYVSQEAWIT-NDTLRHNIL 137 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------~ig~v~Q~~~l~-~~Tv~enI~ 137 (280)
+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|+.+|+.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 69999999999999999999999999999999999999999999987 379999998766 579999998
Q ss_pred hCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 138 FGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 138 ~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
++.... .......+. ..+..+ +....+.+++.+||||||||++|||||+.+| ++++||||++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~p------~llllDEPt~gL 160 (235)
T cd03299 94 YGLKKRKVDKKEIERKVL-----EIAEML--GIDHLLNRKPETLSGGEQQRVAIARALVVNP------KILLLDEPFSAL 160 (235)
T ss_pred HHHHHcCCCHHHHHHHHH-----HHHHHc--CChhHHhcCcccCCHHHHHHHHHHHHHHcCC------CEEEECCCcccC
Confidence 653211 111111111 111111 2334456778899999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 161 D~~ 163 (235)
T cd03299 161 DVR 163 (235)
T ss_pred CHH
Confidence 764
No 257
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.96 E-value=1.4e-29 Score=240.59 Aligned_cols=132 Identities=32% Similarity=0.444 Sum_probs=105.3
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCCCCC-CCcHHH
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~~l~-~~Tv~e 134 (280)
++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|++|++.++ ..|+++
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 899999999999999999999999999999999999999998762 68999998776 579999
Q ss_pred HHHhCCCCCh-hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 135 NILFGEPFEP-QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 135 nI~~g~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
|+.++..... ......+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 95 nl~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p------~lllLDEPts~ 161 (354)
T TIGR02142 95 NLRYGMKRARPSERRISF-----ERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSP------RLLLMDEPLAA 161 (354)
T ss_pred HHHHHhhccChhHHHHHH-----HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEcCCCcC
Confidence 9988643211 1111111 1122222 3344566778899999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|..
T Consensus 162 LD~~ 165 (354)
T TIGR02142 162 LDDP 165 (354)
T ss_pred CCHH
Confidence 9764
No 258
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.4e-29 Score=228.29 Aligned_cols=142 Identities=25% Similarity=0.330 Sum_probs=107.4
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECCe---------------EEEEecCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREGT---------------CAYVSQEAWI 127 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G~---------------ig~v~Q~~~l 127 (280)
..+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|. ++|++|++.+
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 4589999999999999999999999999999999999986 7999998862 6999999988
Q ss_pred CCCcHHHHHHhCCCCC--hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 128 TNDTLRHNILFGEPFE--PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 128 ~~~Tv~enI~~g~~~~--~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
+..|+.+|+.++.... .......+.... .... +........++++.+||||||||++|||||+.+| ++|
T Consensus 101 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l--~~~~-l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p------~ll 171 (261)
T PRK14263 101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHAL--QGAA-LWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP------EVL 171 (261)
T ss_pred ccccHHHHHHHHHhhcCchHHHHHHHHHHH--HHcC-CchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC------CEE
Confidence 8899999998764211 111111111110 0000 1001112335667889999999999999999998 889
Q ss_pred hhccccCCCCceE
Q psy850 206 VLLCPCVSLQSIL 218 (280)
Q Consensus 206 ~ldep~~~l~~il 218 (280)
+||||++++|..-
T Consensus 172 llDEPtsgLD~~~ 184 (261)
T PRK14263 172 LLDEPCSALDPIA 184 (261)
T ss_pred EEeCCCccCCHHH
Confidence 9999999998643
No 259
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.7e-30 Score=240.27 Aligned_cols=149 Identities=23% Similarity=0.312 Sum_probs=120.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCCC-CCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEAW-ITND 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~~-l~~~ 130 (280)
..++|+||+|+.||++.|+|-||||||||+|+|.++++|++|+|.++|. +++|||+.. +++.
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 4689999999999999999999999999999999999999999999983 799999975 4578
Q ss_pred cHHHHHHhCCCCCh---hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 131 TLRHNILFGEPFEP---QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 131 Tv~enI~~g~~~~~---~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
||.+|+.||.+... +...+... ..++. .++....+++|.+|||||||||.|||||+.+| ++|++
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~-----~~l~~--VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~------~IlLM 188 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERAL-----EALEL--VGLEGYADKYPNELSGGMQQRVGLARALANDP------DILLM 188 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHH-----HHHHH--cCchhhhhcCcccccchHHHHHHHHHHHccCC------CEEEe
Confidence 99999999975431 11111111 12221 14555567889999999999999999999999 77999
Q ss_pred ccccCCCCceEEEeehhhhhccC
Q psy850 208 LCPCVSLQSILLMEEVNVYVSKP 230 (280)
Q Consensus 208 dep~~~l~~illlDE~~~~~~~~ 230 (280)
|||+|+||+++.-|-...++..+
T Consensus 189 DEaFSALDPLIR~~mQdeLl~Lq 211 (386)
T COG4175 189 DEAFSALDPLIRTEMQDELLELQ 211 (386)
T ss_pred cCchhhcChHHHHHHHHHHHHHH
Confidence 99999999988776665555443
No 260
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-29 Score=240.55 Aligned_cols=129 Identities=29% Similarity=0.445 Sum_probs=104.3
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCCCCC-CCcHHH
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~~l~-~~Tv~e 134 (280)
++||+|++||+++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.++ +.|+++
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 89999999999999999999999999999999999999999876 268999998776 579999
Q ss_pred HHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 135 NILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 135 nI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
|+.++.... ....+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||++++
T Consensus 96 nl~~~~~~~---~~~~~-----~~~l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~~~p------~llLLDEPts~L 159 (352)
T PRK11144 96 NLRYGMAKS---MVAQF-----DKIVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALLTAP------ELLLMDEPLASL 159 (352)
T ss_pred HHHhhhhhh---hHHHH-----HHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHHcCC------CEEEEcCCcccC
Confidence 998864211 11111 1112222 2334456778899999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 160 D~~ 162 (352)
T PRK11144 160 DLP 162 (352)
T ss_pred CHH
Confidence 753
No 261
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=2.3e-29 Score=231.18 Aligned_cols=140 Identities=25% Similarity=0.316 Sum_probs=106.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--------CceEEECCe-------------EEEEecCCC-
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST--------AGKLSREGT-------------CAYVSQEAW- 126 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~--------~G~I~i~G~-------------ig~v~Q~~~- 126 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|. ++|++|++.
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 4799999999999999999999999999999999999998 999999873 589999975
Q ss_pred CCCCcHHHHHHhCCCCCh--hh-HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhc---------
Q psy850 127 ITNDTLRHNILFGEPFEP--QR-YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYS--------- 194 (280)
Q Consensus 127 l~~~Tv~enI~~g~~~~~--~~-~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~--------- 194 (280)
++..|+++|+.++..... .. ...... ......+..+ +..+..++++.+|||||||||+|||||+.
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~ 171 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHARRAGALTHRDG-EIAWQALALA--GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ 171 (272)
T ss_pred CCCCcHHHHHhhcccccccccccCCHHHH-HHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC
Confidence 467899999987532110 00 000000 0011112222 33445567788999999999999999994
Q ss_pred CCchhhhhhhhhhccccCCCCce
Q psy850 195 NSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 195 ~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+| ++||||||++++|..
T Consensus 172 ~p------~lllLDEPt~~LD~~ 188 (272)
T PRK13547 172 PP------RYLLLDEPTAALDLA 188 (272)
T ss_pred CC------CEEEEcCccccCCHH
Confidence 66 889999999999764
No 262
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-29 Score=249.13 Aligned_cols=140 Identities=21% Similarity=0.294 Sum_probs=107.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------------eEEEEecCCCCC-CCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------------TCAYVSQEAWIT-NDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--------------~ig~v~Q~~~l~-~~Tv~ 133 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|++
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 98 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVL 98 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHH
Confidence 479999999999999999999999999999999999999999999986 279999997655 56999
Q ss_pred HHHHhCCCCC----hhh--HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 134 HNILFGEPFE----PQR--YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 134 enI~~g~~~~----~~~--~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
+|+.++.... ... ...... ......+..+ +.....++++.+|||||||||+|||||+.+| ++|||
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p------~lllL 169 (510)
T PRK09700 99 ENLYIGRHLTKKVCGVNIIDWREMR-VRAAMMLLRV--GLKVDLDEKVANLSISHKQMLEIAKTLMLDA------KVIIM 169 (510)
T ss_pred HHhhhccccccccccccccCHHHHH-HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHHHHHhcCC------CEEEE
Confidence 9998754210 000 000000 0111122222 2223456678899999999999999999998 88999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
||||+++|..
T Consensus 170 DEPt~~LD~~ 179 (510)
T PRK09700 170 DEPTSSLTNK 179 (510)
T ss_pred eCCCCCCCHH
Confidence 9999999763
No 263
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.7e-29 Score=222.78 Aligned_cols=134 Identities=31% Similarity=0.426 Sum_probs=104.9
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCCCCC-CCcHHH
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~~l~-~~Tv~e 134 (280)
|+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|+.+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 99999999 99999999999999999999999999999999876 278999998776 569999
Q ss_pred HHHhCCCC-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 135 NILFGEPF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 135 nI~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
|+.++... ........ ....+..+ +.....++++.+||||||||++|||||+.+| ++|+||||+++
T Consensus 95 ~l~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p------~llllDEPt~~ 161 (214)
T cd03297 95 NLAFGLKRKRNREDRIS-----VDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQP------ELLLLDEPFSA 161 (214)
T ss_pred HHHHHHhhCCHHHHHHH-----HHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcCC------CEEEEcCCccc
Confidence 99875321 11111111 11122222 2334456778899999999999999999998 88999999999
Q ss_pred CCceEEE
Q psy850 214 LQSILLM 220 (280)
Q Consensus 214 l~~illl 220 (280)
+|..-.-
T Consensus 162 LD~~~~~ 168 (214)
T cd03297 162 LDRALRL 168 (214)
T ss_pred CCHHHHH
Confidence 9875433
No 264
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-29 Score=248.36 Aligned_cols=136 Identities=27% Similarity=0.334 Sum_probs=106.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------------eEEEEecCCCCC-CCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------------TCAYVSQEAWIT-NDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--------------~ig~v~Q~~~l~-~~Tv~ 133 (280)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++ ..|+.
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVA 97 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHH
Confidence 479999999999999999999999999999999999999999999876 279999998665 56999
Q ss_pred HHHHhCCCC------ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 134 HNILFGEPF------EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 134 enI~~g~~~------~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
+|+.++... ........+ ...+..+ +......+++.+|||||||||+|||||+.+| ++|||
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~laral~~~p------~lllL 164 (501)
T PRK11288 98 ENLYLGQLPHKGGIVNRRLLNYEA-----REQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKALARNA------RVIAF 164 (501)
T ss_pred HHHHhcccccccCCCCHHHHHHHH-----HHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHHHHhCC------CEEEE
Confidence 999886421 111111111 1122222 1222345677899999999999999999998 88999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
||||+++|..
T Consensus 165 DEPt~~LD~~ 174 (501)
T PRK11288 165 DEPTSSLSAR 174 (501)
T ss_pred cCCCCCCCHH
Confidence 9999999764
No 265
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.96 E-value=2.5e-29 Score=226.92 Aligned_cols=137 Identities=24% Similarity=0.255 Sum_probs=103.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------------------eEEEEecCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------------------TCAYVSQEAW 126 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------------------~ig~v~Q~~~ 126 (280)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR 96 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcc
Confidence 369999999999999999999999999999999999999999999865 1689999873
Q ss_pred --C-CCCcHHHHHHhCC---CC-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchh
Q psy850 127 --I-TNDTLRHNILFGE---PF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQ 199 (280)
Q Consensus 127 --l-~~~Tv~enI~~g~---~~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~ 199 (280)
+ +..++.+|+.+.. .. ....... .....+..+.. ..+..++++..|||||||||+|||||+.+|
T Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l-~~~~~~~~~~~LSgG~~qrv~laral~~~p--- 167 (253)
T TIGR02323 97 DGLRMRVSAGANIGERLMAIGARHYGNIRA-----AAHDWLEEVEI-DPTRIDDLPRAFSGGMQQRLQIARNLVTRP--- 167 (253)
T ss_pred cccCccccHHHHHHHHHHHhcccchHHHHH-----HHHHHHHHcCC-ChhhhhcCchhcCHHHHHHHHHHHHHhcCC---
Confidence 2 2458888885421 00 0001111 11122233311 123556778899999999999999999998
Q ss_pred hhhhhhhhccccCCCCce
Q psy850 200 QTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 200 ~~~~ll~ldep~~~l~~i 217 (280)
++|+||||++++|..
T Consensus 168 ---~vlllDEP~~~LD~~ 182 (253)
T TIGR02323 168 ---RLVFMDEPTGGLDVS 182 (253)
T ss_pred ---CEEEEcCCCccCCHH
Confidence 889999999999864
No 266
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.8e-30 Score=222.23 Aligned_cols=139 Identities=27% Similarity=0.347 Sum_probs=111.2
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLR 133 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~ 133 (280)
..++|+++||.+.+||+++|+||||||||||+|+++.++.|++|++.+.|+ ++||.|.|.+|..||+
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 467899999999999999999999999999999999999999999999984 6899999999999999
Q ss_pred HHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 134 HNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 134 enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
+|+.|.-.....+...... ...+..+ ......+.++..+||||||||++|+|-|.--| ++|+|||||++
T Consensus 95 DNlifP~~~r~rr~dr~aa----~~llar~-~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P------~ILLLDE~TsA 163 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAA----LDLLARF-ALPDSILTKNITELSGGEKQRIALIRNLQFMP------KILLLDEITSA 163 (223)
T ss_pred hccccchHHhccCCChHHH----HHHHHHc-CCchhhhcchhhhccchHHHHHHHHHHhhcCC------ceEEecCchhh
Confidence 9999863221111111110 0111111 13445667778889999999999999999887 78999999998
Q ss_pred CCc
Q psy850 214 LQS 216 (280)
Q Consensus 214 l~~ 216 (280)
+|.
T Consensus 164 LD~ 166 (223)
T COG4619 164 LDE 166 (223)
T ss_pred cCh
Confidence 865
No 267
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.6e-29 Score=227.24 Aligned_cols=141 Identities=24% Similarity=0.356 Sum_probs=105.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC-----------------eEEEEecCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG-----------------TCAYVSQEAW 126 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G-----------------~ig~v~Q~~~ 126 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++| .++|++|++.
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 479999999999999999999999999999999999875 799998864 2789999988
Q ss_pred CCCCcHHHHHHhCCCC---ChhhH-HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 127 ITNDTLRHNILFGEPF---EPQRY-YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 127 l~~~Tv~enI~~g~~~---~~~~~-~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+++.|+++|+.++... ..... .+..... + ...... .+.....++++.+|||||||||+|||||+.+|
T Consensus 110 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-l-~~~~l~-~~l~~~~~~~~~~LS~G~~qrv~laral~~~p------ 180 (265)
T PRK14252 110 PFPKSIFENVAYGLRIRGVKRRSILEERVENA-L-RNAALW-DEVKDRLGDLAFNLSGGQQQRLCIARALATDP------ 180 (265)
T ss_pred CCcchHHHHHHhHHHHcCCChHHHHHHHHHHH-H-HHcCCc-hhhhHHHhCCcccCCHHHHHHHHHHHHHHcCC------
Confidence 8777999999875311 11111 1111110 0 011110 01123456678899999999999999999998
Q ss_pred hhhhhccccCCCCceE
Q psy850 203 HFLVLLCPCVSLQSIL 218 (280)
Q Consensus 203 ~ll~ldep~~~l~~il 218 (280)
++++||||++++|..-
T Consensus 181 ~llllDEPt~gLD~~~ 196 (265)
T PRK14252 181 EILLFDEPTSALDPIA 196 (265)
T ss_pred CEEEEeCCCccCCHHH
Confidence 8899999999997643
No 268
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=4.2e-30 Score=230.52 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=117.9
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCC-CC
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWIT-ND 130 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~ 130 (280)
++..+++||||++++||+++||||||||||||+++|+|+++|++|+|.++|+ ++..||.+.+| .+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~l 94 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL 94 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCC
Confidence 4556999999999999999999999999999999999999999999999984 67899998766 77
Q ss_pred cHHHHHHhCCCCCh--------hhH---HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchh
Q psy850 131 TLRHNILFGEPFEP--------QRY---YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQ 199 (280)
Q Consensus 131 Tv~enI~~g~~~~~--------~~~---~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~ 199 (280)
||.||++.+..... .++ .+...+ .....++.. ++....+++..+||+|||+|+.|||||+.+|
T Consensus 95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e-~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~LEIArALa~~P--- 168 (250)
T COG0411 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARE-RARELLEFV--GLGELADRPAGNLSYGQQRRLEIARALATQP--- 168 (250)
T ss_pred cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH-HHHHHHHHc--CCchhhcchhhcCChhHhHHHHHHHHHhcCC---
Confidence 99999998743110 011 111111 111122222 5566667788899999999999999999998
Q ss_pred hhhhhhhhccccCCCCceEEEeehhhhhccC
Q psy850 200 QTFHFLVLLCPCVSLQSILLMEEVNVYVSKP 230 (280)
Q Consensus 200 ~~~~ll~ldep~~~l~~illlDE~~~~~~~~ 230 (280)
++|+||||..++++-..-|-.+++.+.+
T Consensus 169 ---~lLLLDEPaAGln~~e~~~l~~~i~~i~ 196 (250)
T COG0411 169 ---KLLLLDEPAAGLNPEETEELAELIRELR 196 (250)
T ss_pred ---CEEEecCccCCCCHHHHHHHHHHHHHHH
Confidence 8999999999986544444444444433
No 269
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.96 E-value=6.2e-29 Score=226.99 Aligned_cols=137 Identities=24% Similarity=0.310 Sum_probs=104.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCC--CC-CCcH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAW--IT-NDTL 132 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~--l~-~~Tv 132 (280)
.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++| .++|++|++. ++ ..|+
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 479999999999999999999999999999999999999999999986 2799999973 33 4589
Q ss_pred HHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 133 RHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 133 ~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
.+++.+.... ......+.+. ..+..+ +. ......++.+|||||||||+|||||+.+| ++|||
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p------~lllL 173 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQII-----ETLRQV--GLLPDHASYYPHMLAPGQKQRLGLARALILRP------KVIIA 173 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHH-----HHHHHc--CCChHHHhcCchhcCHHHHHHHHHHHHHHhCC------CEEEE
Confidence 9988653211 1111111111 112221 11 12234567889999999999999999998 88999
Q ss_pred ccccCCCCceE
Q psy850 208 LCPCVSLQSIL 218 (280)
Q Consensus 208 dep~~~l~~il 218 (280)
|||++++|..-
T Consensus 174 DEPt~~LD~~~ 184 (267)
T PRK15112 174 DEALASLDMSM 184 (267)
T ss_pred cCCcccCCHHH
Confidence 99999998743
No 270
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.96 E-value=4.1e-30 Score=253.23 Aligned_cols=153 Identities=24% Similarity=0.298 Sum_probs=121.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC---------------eEEEEecCCCC---CC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---------------TCAYVSQEAWI---TN 129 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G---------------~ig~v~Q~~~l---~~ 129 (280)
..+++||||++++||++||||+||||||||.|+|+|+.+|++|+|.++| ++-++||+|.. +.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence 4589999999999999999999999999999999999999999999987 25789999843 46
Q ss_pred CcHHHHHHhCCCCCh----hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 130 DTLRHNILFGEPFEP----QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 130 ~Tv~enI~~g~~~~~----~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
.||+++|........ .+..+.+. ..++.. ......++++|++|||||||||+|||||+.+| ++|
T Consensus 384 ~tV~~~i~epL~~~~~~~~~~~~~rv~-----~ll~~V-gL~~~~l~ryP~elSGGQrQRvaIARALa~~P------~ll 451 (539)
T COG1123 384 MTVGDILAEPLRIHGGGSGAERRARVA-----ELLELV-GLPPEFLDRYPHELSGGQRQRVAIARALALEP------KLL 451 (539)
T ss_pred ccHHHHHHhHHhhhcccchHHHHHHHH-----HHHHHc-CCCHHHHhcCchhcCcchhHHHHHHHHHhcCC------CEE
Confidence 799999875432111 11111111 111111 11133678999999999999999999999998 899
Q ss_pred hhccccCCCCceEEEeehhhhhccCcc
Q psy850 206 VLLCPCVSLQSILLMEEVNVYVSKPID 232 (280)
Q Consensus 206 ~ldep~~~l~~illlDE~~~~~~~~~~ 232 (280)
|+|||+|++|.++...-.|++.+.+-.
T Consensus 452 i~DEp~SaLDvsvqa~VlnLl~~lq~e 478 (539)
T COG1123 452 ILDEPVSALDVSVQAQVLNLLKDLQEE 478 (539)
T ss_pred EecCCccccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887654
No 271
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.3e-29 Score=226.56 Aligned_cols=139 Identities=22% Similarity=0.308 Sum_probs=104.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEECC---------------eEEEEecCCCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST-----AGKLSREG---------------TCAYVSQEAWIT 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~-----~G~I~i~G---------------~ig~v~Q~~~l~ 128 (280)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++| .++|++|++.++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 3799999999999999999999999999999999999985 79888765 278999998777
Q ss_pred CCcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCC--CCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILP--GGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~--~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+.|++||+.++... ........+.. .+..+. .......++++.+||||||||++|||||+.+|
T Consensus 101 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~-----~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p------ 169 (261)
T PRK14258 101 PMSVYDNVAYGVKIVGWRPKLEIDDIVES-----ALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKP------ 169 (261)
T ss_pred cccHHHHHHHHHHhcCCCcHHHHHHHHHH-----HHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCC------
Confidence 78999999864211 11111111111 111110 00112345677899999999999999999998
Q ss_pred hhhhhccccCCCCceE
Q psy850 203 HFLVLLCPCVSLQSIL 218 (280)
Q Consensus 203 ~ll~ldep~~~l~~il 218 (280)
++|+||||++++|..-
T Consensus 170 ~vllLDEP~~~LD~~~ 185 (261)
T PRK14258 170 KVLLMDEPCFGLDPIA 185 (261)
T ss_pred CEEEEeCCCccCCHHH
Confidence 8899999999998743
No 272
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=2.3e-29 Score=219.69 Aligned_cols=110 Identities=34% Similarity=0.497 Sum_probs=97.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEECCe----------EEEEecCCCCC-CCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL--RSTAGKLSREGT----------CAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~--~p~~G~I~i~G~----------ig~v~Q~~~l~-~~Tv~en 135 (280)
.+|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+ ++|++|++.++ ..|+++|
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 102 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRET 102 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHH
Confidence 4799999999999999999999999999999999999 999999999873 78999998766 4699999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+.++.. . . +||||||||++|||||+.+| ++|++|||++++|
T Consensus 103 i~~~~~---------~-----~-------------------~LS~G~~qrv~laral~~~p------~illlDEP~~~LD 143 (194)
T cd03213 103 LMFAAK---------L-----R-------------------GLSGGERKRVSIALELVSNP------SLLFLDEPTSGLD 143 (194)
T ss_pred HHHHHH---------h-----c-------------------cCCHHHHHHHHHHHHHHcCC------CEEEEeCCCcCCC
Confidence 965210 0 0 59999999999999999998 7899999999998
Q ss_pred ce
Q psy850 216 SI 217 (280)
Q Consensus 216 ~i 217 (280)
..
T Consensus 144 ~~ 145 (194)
T cd03213 144 SS 145 (194)
T ss_pred HH
Confidence 74
No 273
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=4.4e-29 Score=228.50 Aligned_cols=137 Identities=25% Similarity=0.239 Sum_probs=107.8
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCC-CCcHHHHHHhCCC---CC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT-NDTLRHNILFGEP---FE 143 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~-~~Tv~enI~~g~~---~~ 143 (280)
+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+++++|.+.+. ..|+++|+.++.. ..
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~ 116 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFK 116 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCC
Confidence 4589999999999999999999999999999999999999999999999999999987655 5699999976421 11
Q ss_pred hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 144 PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 144 ~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.......+.. .+... +....+..++.+|||||||||+|||||+.+| ++|+||||++++|..
T Consensus 117 ~~~~~~~~~~-----~l~~~--~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p------~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 117 RKEIKAMTPK-----IIEFS--ELGEFIYQPVKKYSSGMRAKLGFSINITVNP------DILVIDEALSVGDQT 177 (264)
T ss_pred HHHHHHHHHH-----HHHHc--CCchhhcCCcccCCHHHHHHHHHHHHHhhCC------CEEEEeCccccCCHH
Confidence 1111111111 11111 2233455678899999999999999999998 889999999999863
No 274
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-29 Score=235.61 Aligned_cols=151 Identities=19% Similarity=0.264 Sum_probs=108.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC----CCCceEEECC-----------------eEEEEecCCC-
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR----STAGKLSREG-----------------TCAYVSQEAW- 126 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~----p~~G~I~i~G-----------------~ig~v~Q~~~- 126 (280)
.+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++| .++||||++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~ 100 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence 47999999999999999999999999999999999996 5899999987 2799999975
Q ss_pred -C-CCCcHHHHHHhCCC---CCh---hhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCc
Q psy850 127 -I-TNDTLRHNILFGEP---FEP---QRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSF 197 (280)
Q Consensus 127 -l-~~~Tv~enI~~g~~---~~~---~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~ 197 (280)
+ +..|+.+++..... ... .+.... . ......+..+.-.. ...+.+++.+|||||||||+|||||+.+|
T Consensus 101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-~-~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P- 177 (330)
T PRK15093 101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-K-RRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQP- 177 (330)
T ss_pred hcCccccHHHHHHHHHHhhhccccccccHHHH-H-HHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCC-
Confidence 2 34689999864210 000 000000 0 01111222221111 12356788999999999999999999998
Q ss_pred hhhhhhhhhhccccCCCCceEEEeehhhhh
Q psy850 198 EQQTFHFLVLLCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 198 i~~~~~ll~ldep~~~l~~illlDE~~~~~ 227 (280)
++||+|||++++|....-.-.+++.
T Consensus 178 -----~llilDEPts~LD~~~~~~i~~lL~ 202 (330)
T PRK15093 178 -----RLLIADEPTNAMEPTTQAQIFRLLT 202 (330)
T ss_pred -----CEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 8899999999998755443333333
No 275
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.96 E-value=6.7e-29 Score=224.90 Aligned_cols=138 Identities=22% Similarity=0.256 Sum_probs=102.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC----CCceEEECC-----------eEEEEecCCC-CC--CC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS----TAGKLSREG-----------TCAYVSQEAW-IT--ND 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p----~~G~I~i~G-----------~ig~v~Q~~~-l~--~~ 130 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++. .+ ..
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 379999999999999999999999999999999999999 999999876 3789999973 23 35
Q ss_pred cHHHHHHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 131 TLRHNILFGEP-FEPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 131 Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
|+.+|+.+... .........+. ..+..+.-.. .+.+++.+.+|||||||||+|||||+.+| ++||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p------~lLlLD 165 (254)
T PRK10418 97 TMHTHARETCLALGKPADDATLT-----AALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA------PFIIAD 165 (254)
T ss_pred cHHHHHHHHHHHcCCChHHHHHH-----HHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC------CEEEEe
Confidence 88888754210 00000011111 1111111000 12356778899999999999999999998 889999
Q ss_pred cccCCCCce
Q psy850 209 CPCVSLQSI 217 (280)
Q Consensus 209 ep~~~l~~i 217 (280)
||++++|..
T Consensus 166 EPt~~LD~~ 174 (254)
T PRK10418 166 EPTTDLDVV 174 (254)
T ss_pred CCCcccCHH
Confidence 999999864
No 276
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4e-29 Score=253.04 Aligned_cols=139 Identities=24% Similarity=0.272 Sum_probs=107.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC---------------------------eEEEE
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---------------------------TCAYV 121 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G---------------------------~ig~v 121 (280)
.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 479999999999999999999999999999999999999999998754 37999
Q ss_pred ecCC--CCC-CCcHHHHHHhCCC----CChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHh
Q psy850 122 SQEA--WIT-NDTLRHNILFGEP----FEPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALY 193 (280)
Q Consensus 122 ~Q~~--~l~-~~Tv~enI~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~ 193 (280)
+|++ .++ ..||.+|+.++.. .......+.+ ...+..+.-.. ...+++++.+|||||||||+|||||+
T Consensus 110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~ 184 (623)
T PRK10261 110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEA-----KRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS 184 (623)
T ss_pred EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh
Confidence 9997 344 5799999987531 1111111111 11222221001 23457788999999999999999999
Q ss_pred cCCchhhhhhhhhhccccCCCCceE
Q psy850 194 SNSFEQQTFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 194 ~~p~i~~~~~ll~ldep~~~l~~il 218 (280)
.+| ++|||||||+++|...
T Consensus 185 ~~P------~lLllDEPt~~LD~~~ 203 (623)
T PRK10261 185 CRP------AVLIADEPTTALDVTI 203 (623)
T ss_pred CCC------CEEEEeCCCCccCHHH
Confidence 998 8899999999998765
No 277
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.96 E-value=2.4e-29 Score=225.71 Aligned_cols=139 Identities=26% Similarity=0.334 Sum_probs=105.8
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEe-cCCCCC-CCcH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVS-QEAWIT-NDTL 132 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~-Q~~~l~-~~Tv 132 (280)
.+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++ |.+.++ ..|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 356899999999999999999999999999999999999999999998763 68998 445454 6799
Q ss_pred HHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 133 RHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 133 ~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
++|+.+... .........+. ..+..+ +.....+.++.+||||||||++|||||+.+| ++|+|||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--gl~~~~~~~~~~LS~G~~qrl~la~al~~~p------~llllDE 179 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLD-----ELSELL--DLEELLDTPVRQLSLGQRMRAEIAAALLHEP------EILFLDE 179 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEEcC
Confidence 999876421 11111111111 111211 2233345667889999999999999999998 8899999
Q ss_pred ccCCCCceE
Q psy850 210 PCVSLQSIL 218 (280)
Q Consensus 210 p~~~l~~il 218 (280)
|++++|..-
T Consensus 180 Pt~~LD~~~ 188 (236)
T cd03267 180 PTIGLDVVA 188 (236)
T ss_pred CCCCCCHHH
Confidence 999998753
No 278
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=1.3e-29 Score=207.33 Aligned_cols=123 Identities=37% Similarity=0.496 Sum_probs=96.8
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCC-CCcHHHHH
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~-~~Tv~enI 136 (280)
|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..|+++|.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999999999999999973 79999997665 55799992
Q ss_pred HhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 137 LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 137 ~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
. ..+....+..+.+.. .....++.+...|||||||||+|||||+.+| +++++|||++
T Consensus 81 ~------~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~------~llllDEPt~ 137 (137)
T PF00005_consen 81 S------DERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNP------KLLLLDEPTN 137 (137)
T ss_dssp H------HHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTS------SEEEEESTTT
T ss_pred c------ccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCC------CEEEEeCCCC
Confidence 1 222333333322222 1234455566889999999999999999998 6677777764
No 279
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.8e-29 Score=217.88 Aligned_cols=111 Identities=27% Similarity=0.390 Sum_probs=96.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEECC---------eEEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL--RSTAGKLSREG---------TCAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~--~p~~G~I~i~G---------~ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++| .++|++|++.++ ..|+++|+
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREAL 100 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHH
Confidence 4799999999999999999999999999999999986 48999999987 379999998665 46999999
Q ss_pred HhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 137 LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 137 ~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.++. .. . +|||||||||+|||||+.+| ++|++|||++++|.
T Consensus 101 ~~~~---------~~---------~---------------~LSgGe~qrv~la~al~~~p------~vlllDEP~~~LD~ 141 (192)
T cd03232 101 RFSA---------LL---------R---------------GLSVEQRKRLTIGVELAAKP------SILFLDEPTSGLDS 141 (192)
T ss_pred HHHH---------HH---------h---------------cCCHHHhHHHHHHHHHhcCC------cEEEEeCCCcCCCH
Confidence 7531 00 0 69999999999999999998 78999999999987
Q ss_pred eE
Q psy850 217 IL 218 (280)
Q Consensus 217 il 218 (280)
.-
T Consensus 142 ~~ 143 (192)
T cd03232 142 QA 143 (192)
T ss_pred HH
Confidence 43
No 280
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-29 Score=246.88 Aligned_cols=138 Identities=21% Similarity=0.288 Sum_probs=108.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCC-CCcH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWIT-NDTL 132 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~Tv 132 (280)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|++|++.++ ..|+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSV 90 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCH
Confidence 45899999999999999999999999999999999999999999999872 79999998654 6799
Q ss_pred HHHHHhCCC-C-----ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 133 RHNILFGEP-F-----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 133 ~enI~~g~~-~-----~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
++|+.++.. . ......+.+ ...+..+ +......+++.+|||||||||+|||||+.+| ++||
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p------~lll 157 (491)
T PRK10982 91 MDNMWLGRYPTKGMFVDQDKMYRDT-----KAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSYNA------KIVI 157 (491)
T ss_pred HHHhhcccccccccccCHHHHHHHH-----HHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHhCC------CEEE
Confidence 999987642 1 111111111 1122222 2223345678899999999999999999998 8899
Q ss_pred hccccCCCCceE
Q psy850 207 LLCPCVSLQSIL 218 (280)
Q Consensus 207 ldep~~~l~~il 218 (280)
|||||+++|..-
T Consensus 158 LDEPt~~LD~~~ 169 (491)
T PRK10982 158 MDEPTSSLTEKE 169 (491)
T ss_pred EeCCCCCCCHHH
Confidence 999999998643
No 281
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.96 E-value=4.5e-29 Score=245.92 Aligned_cols=140 Identities=26% Similarity=0.381 Sum_probs=105.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEECC--------------eEEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS--TAGKLSREG--------------TCAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p--~~G~I~i~G--------------~ig~v~Q~~~l~-~~T 131 (280)
.+|++|||+|++|++++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++.++ ..|
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELS 94 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCc
Confidence 479999999999999999999999999999999999987 799999987 279999998655 579
Q ss_pred HHHHHHhCCCCCh-h-hH-HHHHHHhhhhhhHhhCCCCCchhh-ccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 132 LRHNILFGEPFEP-Q-RY-YKTLYNCALNTDIHILPGGDQTEI-GERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 132 v~enI~~g~~~~~-~-~~-~~~~~~~~l~~~l~~l~~g~~~~i-~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
+++|+.++..... . .. ..... ......+..+ +..... .+++.+|||||||||+|||||+.+| ++|||
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p------~lllL 165 (500)
T TIGR02633 95 VAENIFLGNEITLPGGRMAYNAMY-LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEIAKALNKQA------RLLIL 165 (500)
T ss_pred HHHHHHhhccccccccccCHHHHH-HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHHHHHHhhCC------CEEEE
Confidence 9999987643210 0 00 00000 0111122222 111111 3457789999999999999999998 88999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
||||+++|..
T Consensus 166 DEPt~~LD~~ 175 (500)
T TIGR02633 166 DEPSSSLTEK 175 (500)
T ss_pred eCCCCCCCHH
Confidence 9999999764
No 282
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.96 E-value=2.8e-29 Score=224.05 Aligned_cols=137 Identities=25% Similarity=0.305 Sum_probs=102.9
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC----CCceEEECC-----------eEEEEecCCC--CC-CCc
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS----TAGKLSREG-----------TCAYVSQEAW--IT-NDT 131 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p----~~G~I~i~G-----------~ig~v~Q~~~--l~-~~T 131 (280)
+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++. ++ ..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999887 3799999984 33 369
Q ss_pred HHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 132 LRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 132 v~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
+.+|+.+.... ........+ ...+..+.-.. .+..++.+.+|||||||||+|||||+.+| ++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p------~vllL 149 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALI-----LEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEP------PFLIA 149 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHH-----HHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCC------CEEEE
Confidence 99988653211 011111111 11122211000 13456677889999999999999999998 88999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
|||++++|..
T Consensus 150 DEPt~~LD~~ 159 (230)
T TIGR02770 150 DEPTTDLDVV 159 (230)
T ss_pred cCCccccCHH
Confidence 9999999864
No 283
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.96 E-value=9.3e-29 Score=226.08 Aligned_cols=136 Identities=25% Similarity=0.324 Sum_probs=104.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCC--CC-C
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAW--IT-N 129 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~--l~-~ 129 (280)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++. ++ .
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 105 (268)
T PRK10419 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR 105 (268)
T ss_pred eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence 4799999999999999999999999999999999999999999998873 789999973 33 5
Q ss_pred CcHHHHHHhCCC----CChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 130 DTLRHNILFGEP----FEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 130 ~Tv~enI~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
.|+.+|+.+... .........+ ...+..+ +.. ...+.++.+||||||||++|||||+.+| ++
T Consensus 106 ~t~~~~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p------~l 172 (268)
T PRK10419 106 KTVREIIREPLRHLLSLDKAERLARA-----SEMLRAV--DLDDSVLDKRPPQLSGGQLQRVCLARALAVEP------KL 172 (268)
T ss_pred CCHHHHHHHHHHhhccCCHHHHHHHH-----HHHHHHc--CCChhHhhCCCccCChHHHHHHHHHHHHhcCC------CE
Confidence 699999864311 1111111111 1122222 222 2346678899999999999999999998 88
Q ss_pred hhhccccCCCCce
Q psy850 205 LVLLCPCVSLQSI 217 (280)
Q Consensus 205 l~ldep~~~l~~i 217 (280)
||||||++++|..
T Consensus 173 llLDEPt~~LD~~ 185 (268)
T PRK10419 173 LILDEAVSNLDLV 185 (268)
T ss_pred EEEeCCCcccCHH
Confidence 9999999999874
No 284
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.96 E-value=1e-28 Score=223.38 Aligned_cols=137 Identities=27% Similarity=0.325 Sum_probs=104.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCC-CCCCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAW-ITNDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~-l~~~Tv~e 134 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++ .+|+|.++|. ++|++|++. ++..|+++
T Consensus 10 ~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 10 TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 37999999999999999999999999999999999986 4999999873 689999974 45779999
Q ss_pred HHHhCCCCC--hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhc-----CCchhhhhhhhhh
Q psy850 135 NILFGEPFE--PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYS-----NSFEQQTFHFLVL 207 (280)
Q Consensus 135 nI~~g~~~~--~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~-----~p~i~~~~~ll~l 207 (280)
|+.++.... .....+.+ ...+..+ +.....++++.+||||||||++|||||+. +| .|++|+|
T Consensus 89 nl~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p----~p~llll 157 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASAL-----NEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINP----AGQLLLL 157 (248)
T ss_pred HHHhcCccCCCcHHHHHHH-----HHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCC----CCCEEEE
Confidence 998764221 11111111 1112222 22334566788999999999999999997 21 1389999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
|||++++|..
T Consensus 158 DEPt~~LD~~ 167 (248)
T PRK03695 158 DEPMNSLDVA 167 (248)
T ss_pred cCCcccCCHH
Confidence 9999999875
No 285
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=223.91 Aligned_cols=142 Identities=25% Similarity=0.337 Sum_probs=105.4
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------------eEEEEecCCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------------TCAYVSQEAWIT 128 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------------~ig~v~Q~~~l~ 128 (280)
+.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++
T Consensus 23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (257)
T PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPF 102 (257)
T ss_pred ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccC
Confidence 4589999999999999999999999999999999999999997766554 268999998776
Q ss_pred C-CcHHHHHHhCCC---CC-hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 129 N-DTLRHNILFGEP---FE-PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 129 ~-~Tv~enI~~g~~---~~-~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
+ .|+++|+.++.. .. .....+.+..+.. .+...+ ......+.++..||||||||++|||||+.+| +
T Consensus 103 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~-~~~~~~~~~~~~LS~G~~qrl~laral~~~P------~ 173 (257)
T PRK14246 103 PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLR--KVGLWK-EVYDRLNSPASQLSGGQQQRLTIARALALKP------K 173 (257)
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HcCCCc-cchhhhcCCcccCCHHHHHHHHHHHHHHcCC------C
Confidence 4 699999987532 11 1111111111110 111000 0012345677889999999999999999998 8
Q ss_pred hhhhccccCCCCceE
Q psy850 204 FLVLLCPCVSLQSIL 218 (280)
Q Consensus 204 ll~ldep~~~l~~il 218 (280)
+++||||++++|..-
T Consensus 174 llllDEPt~~LD~~~ 188 (257)
T PRK14246 174 VLLMDEPTSMIDIVN 188 (257)
T ss_pred EEEEcCCCccCCHHH
Confidence 899999999998754
No 286
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.96 E-value=6.9e-29 Score=221.27 Aligned_cols=138 Identities=22% Similarity=0.225 Sum_probs=104.2
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecC-CCC-CCCcHHHHHHhCCCC--
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE-AWI-TNDTLRHNILFGEPF-- 142 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~-~~l-~~~Tv~enI~~g~~~-- 142 (280)
.+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+..+..+. ..+ +..|+++|+.++...
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 113 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLG 113 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcC
Confidence 4569999999999999999999999999999999999999999999999976544432 333 367999999765321
Q ss_pred -ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 143 -EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 143 -~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
......... ...+..+ +....+++++.+||||||||++|||||+.+| ++||||||++++|..
T Consensus 114 ~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~p------~llllDEP~~gLD~~ 176 (224)
T cd03220 114 LSRKEIDEKI-----DEIIEFS--ELGDFIDLPVKTYSSGMKARLAFAIATALEP------DILLIDEVLAVGDAA 176 (224)
T ss_pred CCHHHHHHHH-----HHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccCCHH
Confidence 111111111 1111111 2233445667889999999999999999998 889999999999874
No 287
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.96 E-value=2.9e-28 Score=219.66 Aligned_cols=139 Identities=19% Similarity=0.182 Sum_probs=102.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEECCe--------------EEEEecCCCCCC-Cc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ--LRSTAGKLSREGT--------------CAYVSQEAWITN-DT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl--~~p~~G~I~i~G~--------------ig~v~Q~~~l~~-~T 131 (280)
.+|++|||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|. ++|++|++.+++ .|
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 100 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVS 100 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccccc
Confidence 479999999999999999999999999999999998 5899999998762 578999986664 58
Q ss_pred HHHHHHhCCCCC-------hhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCC-CCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 132 LRHNILFGEPFE-------PQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGI-NLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 132 v~enI~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~-~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
+.+|+.+..... ......... .....+..+ +.. ..+++++. +|||||||||+|||||+.+|
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p------ 170 (252)
T CHL00131 101 NADFLRLAYNSKRKFQGLPELDPLEFLE--IINEKLKLV--GMDPSFLSRNVNEGFSGGEKKRNEILQMALLDS------ 170 (252)
T ss_pred HHHHHHHhhhhhhcccccccccHHHHHH--HHHHHHHHc--CCchhhhccccccCCCHHHHHHHHHHHHHHcCC------
Confidence 999987542110 000000000 011112221 121 23455665 59999999999999999998
Q ss_pred hhhhhccccCCCCce
Q psy850 203 HFLVLLCPCVSLQSI 217 (280)
Q Consensus 203 ~ll~ldep~~~l~~i 217 (280)
++||||||++++|..
T Consensus 171 ~llllDEPt~~LD~~ 185 (252)
T CHL00131 171 ELAILDETDSGLDID 185 (252)
T ss_pred CEEEEcCCcccCCHH
Confidence 889999999999764
No 288
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.6e-28 Score=243.84 Aligned_cols=141 Identities=23% Similarity=0.225 Sum_probs=105.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCCC-CCcHHHHHHhCCCCChh
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWIT-NDTLRHNILFGEPFEPQ 145 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l~-~~Tv~enI~~g~~~~~~ 145 (280)
.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.++ ..|+++|+.++......
T Consensus 15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 94 (530)
T PRK15064 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWE 94 (530)
T ss_pred EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHH
Confidence 479999999999999999999999999999999999999999999986 689999997655 56999999875310000
Q ss_pred ---hH-----------------HHH---H-------HHhhhhhhHhhCCCCCchhh-ccCCCCCCHHHHHHHHHHHHHhc
Q psy850 146 ---RY-----------------YKT---L-------YNCALNTDIHILPGGDQTEI-GERGINLSGGQKQRVALARALYS 194 (280)
Q Consensus 146 ---~~-----------------~~~---~-------~~~~l~~~l~~l~~g~~~~i-~~~~~~LSGGQrQRV~LARAL~~ 194 (280)
.. .+. . ........+..+ +..... .+++.+|||||||||+|||||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~ 172 (530)
T PRK15064 95 VKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPEEQHYGLMSEVAPGWKLRVLLAQALFS 172 (530)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCChhHhcCchhhcCHHHHHHHHHHHHHhc
Confidence 00 000 0 000011112222 222222 34678899999999999999999
Q ss_pred CCchhhhhhhhhhccccCCCCce
Q psy850 195 NSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 195 ~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+| ++|+|||||+++|+.
T Consensus 173 ~p------~lLlLDEPt~~LD~~ 189 (530)
T PRK15064 173 NP------DILLLDEPTNNLDIN 189 (530)
T ss_pred CC------CEEEEcCCCcccCHH
Confidence 98 889999999999763
No 289
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4e-29 Score=228.06 Aligned_cols=127 Identities=31% Similarity=0.469 Sum_probs=107.3
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCCCCC-CCcHHH
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~~l~-~~Tv~e 134 (280)
+++|+.+.-.++||.|+||||||||+|+|+|+.+|+.|.|.++|+ +|||||+..+| ++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 689999887899999999999999999999999999999999983 79999998766 789999
Q ss_pred HHHhCCCCChh-hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 135 NILFGEPFEPQ-RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 135 nI~~g~~~~~~-~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
|+.||+..... .+.+.+. .+ +....++++|.+|||||||||+|+|||+..| ++|++|||.++
T Consensus 96 NL~YG~~~~~~~~fd~iv~---------lL--GI~hLL~R~P~~LSGGEkQRVAIGRALLt~P------~LLLmDEPLaS 158 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVA---------LL--GIEHLLDRYPGTLSGGEKQRVAIGRALLTAP------ELLLMDEPLAS 158 (352)
T ss_pred chhhhhcccchHhHHHHHH---------Hh--CcHHHHhhCCCccCcchhhHHHHHHHHhcCC------CeeeecCchhh
Confidence 99999765422 2222222 11 3445567889999999999999999999998 88999999999
Q ss_pred CCc
Q psy850 214 LQS 216 (280)
Q Consensus 214 l~~ 216 (280)
+|.
T Consensus 159 LD~ 161 (352)
T COG4148 159 LDL 161 (352)
T ss_pred ccc
Confidence 863
No 290
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=1.2e-28 Score=223.52 Aligned_cols=137 Identities=21% Similarity=0.185 Sum_probs=103.5
Q ss_pred eeeeeeEEee-----CCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-eEEEEecCCC-CCCCcHHHHHHhCCCC
Q psy850 70 ALVDINFFAP-----KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-TCAYVSQEAW-ITNDTLRHNILFGEPF 142 (280)
Q Consensus 70 vL~~Isl~i~-----~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-~ig~v~Q~~~-l~~~Tv~enI~~g~~~ 142 (280)
.+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++. .+..|+++|+.+....
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 88 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKD 88 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhh
Confidence 4556666664 7999999999999999999999999999999999998 8999999975 4578999998653211
Q ss_pred ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEEE
Q psy850 143 EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLM 220 (280)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~illl 220 (280)
.... ..... ..+..+ +.....++++.+|||||||||+|||||+.+| ++++||||++++|..-..
T Consensus 89 ~~~~-~~~~~-----~~l~~l--~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p------~llllDEPt~~LD~~~~~ 152 (246)
T cd03237 89 FYTH-PYFKT-----EIAKPL--QIEQILDREVPELSGGELQRVAIAACLSKDA------DIYLLDEPSAYLDVEQRL 152 (246)
T ss_pred cccc-HHHHH-----HHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccCCHHHHH
Confidence 0000 00000 111111 2233456678889999999999999999998 888999999999875433
No 291
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=3.1e-28 Score=243.43 Aligned_cols=150 Identities=25% Similarity=0.321 Sum_probs=110.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCCC-CCcHHHHHHhCCCC-Ch
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWIT-NDTLRHNILFGEPF-EP 144 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l~-~~Tv~enI~~g~~~-~~ 144 (280)
.+|+||||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++||+|++.++ ..|+.+|+.++... ..
T Consensus 21 ~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~ 100 (556)
T PRK11819 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKA 100 (556)
T ss_pred eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHH
Confidence 479999999999999999999999999999999999999999999864 699999998776 56999999875310 00
Q ss_pred --hhHH------------------------HHHH-------HhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHH
Q psy850 145 --QRYY------------------------KTLY-------NCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARA 191 (280)
Q Consensus 145 --~~~~------------------------~~~~-------~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARA 191 (280)
..+. .... .......+..+ +. ...++++.+|||||||||+||||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl-~~~~~~~~~LSgGqkqrv~la~a 177 (556)
T PRK11819 101 ALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RC-PPWDAKVTKLSGGERRRVALCRL 177 (556)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CC-CcccCchhhcCHHHHHHHHHHHH
Confidence 0000 0000 00001111111 11 12456778999999999999999
Q ss_pred HhcCCchhhhhhhhhhccccCCCCceEEEeehhhhh
Q psy850 192 LYSNSFEQQTFHFLVLLCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 192 L~~~p~i~~~~~ll~ldep~~~l~~illlDE~~~~~ 227 (280)
|+.+| ++|||||||+++|..-...-.+++.
T Consensus 178 l~~~p------~vlLLDEPt~~LD~~~~~~l~~~L~ 207 (556)
T PRK11819 178 LLEKP------DMLLLDEPTNHLDAESVAWLEQFLH 207 (556)
T ss_pred HhCCC------CEEEEcCCCCcCChHHHHHHHHHHH
Confidence 99998 8899999999998754433333333
No 292
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-29 Score=238.41 Aligned_cols=143 Identities=35% Similarity=0.533 Sum_probs=127.0
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLR 133 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~ 133 (280)
.+++|+++||++++|+.++++||+|+||||++++|.+++++.+|.|.++|+ ||.|||+..+|+.|+.
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~ 354 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIA 354 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHH
Confidence 356899999999999999999999999999999999999999999999985 7999999999999999
Q ss_pred HHHHhCCCC-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 134 HNILFGEPF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 134 enI~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
.|+.+|++. ..+......+...+...+..+|.|..+.+++++..|||||||||+|||+++.+| .+|++||.||
T Consensus 355 yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p------~il~~deats 428 (497)
T COG5265 355 YNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP------PILILDEATS 428 (497)
T ss_pred HHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC------CEEEEehhhh
Confidence 999999864 344556666677788889999999999999999999999999999999999999 4456666666
Q ss_pred CCC
Q psy850 213 SLQ 215 (280)
Q Consensus 213 ~l~ 215 (280)
++|
T Consensus 429 ald 431 (497)
T COG5265 429 ALD 431 (497)
T ss_pred Hhh
Confidence 654
No 293
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=1.7e-28 Score=245.07 Aligned_cols=143 Identities=26% Similarity=0.312 Sum_probs=107.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCCC-CCcHHHHHHhCCCCCh-
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWIT-NDTLRHNILFGEPFEP- 144 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l~-~~Tv~enI~~g~~~~~- 144 (280)
.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++|++|++.++ +.|+.+|+.++.....
T Consensus 19 ~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~ 98 (552)
T TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKD 98 (552)
T ss_pred eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHH
Confidence 479999999999999999999999999999999999999999999874 699999998776 5699999987531000
Q ss_pred ----------------hh----------HHHHHHHhh-------hhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHH
Q psy850 145 ----------------QR----------YYKTLYNCA-------LNTDIHILPGGDQTEIGERGINLSGGQKQRVALARA 191 (280)
Q Consensus 145 ----------------~~----------~~~~~~~~~-------l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARA 191 (280)
.. ....+..+. ....+..+ +. ...+.++.+|||||||||+||||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l-~~~~~~~~~LSgGqkqrv~la~a 175 (552)
T TIGR03719 99 ALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RC-PPWDADVTKLSGGERRRVALCRL 175 (552)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CC-CcccCchhhcCHHHHHHHHHHHH
Confidence 00 000000000 01111111 11 12356678899999999999999
Q ss_pred HhcCCchhhhhhhhhhccccCCCCceEEE
Q psy850 192 LYSNSFEQQTFHFLVLLCPCVSLQSILLM 220 (280)
Q Consensus 192 L~~~p~i~~~~~ll~ldep~~~l~~illl 220 (280)
|+.+| ++|||||||+++|..-..
T Consensus 176 l~~~p------~lLLLDEPt~~LD~~~~~ 198 (552)
T TIGR03719 176 LLSKP------DMLLLDEPTNHLDAESVA 198 (552)
T ss_pred HhcCC------CEEEEcCCCCCCChHHHH
Confidence 99998 889999999999875433
No 294
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=1.5e-28 Score=243.50 Aligned_cols=137 Identities=28% Similarity=0.360 Sum_probs=105.2
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEC-----------------------C------
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL--RSTAGKLSRE-----------------------G------ 116 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~--~p~~G~I~i~-----------------------G------ 116 (280)
+.+|+++||+|.+|++++|+|||||||||||++|+|++ +|++|+|.++ |
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 35799999999999999999999999999999999997 7999999885 1
Q ss_pred -----------------eEEEEecC-CCCC-CCcHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccC
Q psy850 117 -----------------TCAYVSQE-AWIT-NDTLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174 (280)
Q Consensus 117 -----------------~ig~v~Q~-~~l~-~~Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~ 174 (280)
.++|++|+ +.++ ..|+++|+.++.. .........+ ...+..+ +.....+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~ 165 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRA-----VDLIEMV--QLSHRITHI 165 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CChhhhhcC
Confidence 27999997 4444 5799999987421 1111111111 1122222 233345667
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 175 GINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 175 ~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+.+|||||||||+|||||+.+| ++|+|||||+++|+.
T Consensus 166 ~~~LSgGq~qrv~iA~al~~~p------~lllLDEPt~~LD~~ 202 (520)
T TIGR03269 166 ARDLSGGEKQRVVLARQLAKEP------FLFLADEPTGTLDPQ 202 (520)
T ss_pred cccCCHHHHHHHHHHHHHhcCC------CEEEeeCCcccCCHH
Confidence 8899999999999999999998 889999999999764
No 295
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=2.1e-28 Score=214.45 Aligned_cols=109 Identities=23% Similarity=0.227 Sum_probs=92.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEECCe--------------EEEEecCCCCCC-Cc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ--LRSTAGKLSREGT--------------CAYVSQEAWITN-DT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl--~~p~~G~I~i~G~--------------ig~v~Q~~~l~~-~T 131 (280)
.+++++||++.+||+++|+||||||||||+++|+|+ ++|++|+|.++|. ++|++|++.+++ .+
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK 93 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCcc
Confidence 479999999999999999999999999999999999 5799999999872 789999876654 45
Q ss_pred HHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 132 LRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 132 v~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
+++++ ...+.+||||||||++|||||+.+| ++|+||||+
T Consensus 94 ~~~~l-----------------------------------~~~~~~LS~G~~qrv~laral~~~p------~illlDEPt 132 (200)
T cd03217 94 NADFL-----------------------------------RYVNEGFSGGEKKRNEILQLLLLEP------DLAILDEPD 132 (200)
T ss_pred HHHHH-----------------------------------hhccccCCHHHHHHHHHHHHHhcCC------CEEEEeCCC
Confidence 55544 0112369999999999999999998 889999999
Q ss_pred CCCCceE
Q psy850 212 VSLQSIL 218 (280)
Q Consensus 212 ~~l~~il 218 (280)
+++|..-
T Consensus 133 ~~LD~~~ 139 (200)
T cd03217 133 SGLDIDA 139 (200)
T ss_pred ccCCHHH
Confidence 9998643
No 296
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-28 Score=243.47 Aligned_cols=159 Identities=18% Similarity=0.330 Sum_probs=114.4
Q ss_pred cccccccc--cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEec
Q psy850 60 LKAEDVER--NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQ 123 (280)
Q Consensus 60 l~~~~~~~--~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q 123 (280)
++++++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|
T Consensus 266 l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q 345 (510)
T PRK09700 266 FEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345 (510)
T ss_pred EEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccC
Confidence 55555432 24899999999999999999999999999999999999999999999872 699999
Q ss_pred CC---CCC-CCcHHHHHHhCCCCCh----h--h-HHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHH
Q psy850 124 EA---WIT-NDTLRHNILFGEPFEP----Q--R-YYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARA 191 (280)
Q Consensus 124 ~~---~l~-~~Tv~enI~~g~~~~~----~--~-~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARA 191 (280)
++ .++ ..|+++|+.++..... . . .............+..+ +.. ...++++.+|||||||||+||||
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~lAra 423 (510)
T PRK09700 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL--ALKCHSVNQNITELSGGNQQKVLISKW 423 (510)
T ss_pred ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhc--CCCCCCccCccccCChHHHHHHHHHHH
Confidence 83 344 5799999987532100 0 0 00000001111222222 222 23567788999999999999999
Q ss_pred HhcCCchhhhhhhhhhccccCCCCceEEEeehhhh
Q psy850 192 LYSNSFEQQTFHFLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 192 L~~~p~i~~~~~ll~ldep~~~l~~illlDE~~~~ 226 (280)
|+.+| ++|||||||+++|......-.+++
T Consensus 424 l~~~p------~lLlLDEPt~~LD~~~~~~l~~~l 452 (510)
T PRK09700 424 LCCCP------EVIIFDEPTRGIDVGAKAEIYKVM 452 (510)
T ss_pred HhcCC------CEEEECCCCCCcCHHHHHHHHHHH
Confidence 99998 889999999999875443333333
No 297
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-28 Score=249.07 Aligned_cols=146 Identities=21% Similarity=0.260 Sum_probs=111.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCC--CC-
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAW--IT- 128 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~--l~- 128 (280)
..+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++||||++. ++
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 35899999999999999999999999999999999999999999999872 799999972 43
Q ss_pred CCcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 129 NDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 129 ~~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
..||.+|+.+.... ......+.+ ...+..+ +.. ...++++.+|||||||||+|||||+.+| +
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~L~~~--gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p------~ 483 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARV-----AWLLERV--GLLPEHAWRYPHEFSGGQRQRICIARALALNP------K 483 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHH-----HHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC------C
Confidence 57999999764211 111111111 1122222 222 3457788999999999999999999998 8
Q ss_pred hhhhccccCCCCceEEEeehhhh
Q psy850 204 FLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 204 ll~ldep~~~l~~illlDE~~~~ 226 (280)
+|||||||+++|......-.+++
T Consensus 484 llllDEPts~LD~~~~~~i~~ll 506 (623)
T PRK10261 484 VIIADEAVSALDVSIRGQIINLL 506 (623)
T ss_pred EEEEeCCcccCCHHHHHHHHHHH
Confidence 89999999999876544444444
No 298
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-28 Score=243.18 Aligned_cols=154 Identities=21% Similarity=0.257 Sum_probs=114.2
Q ss_pred ccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecC
Q psy850 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQE 124 (280)
Q Consensus 59 ~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~ 124 (280)
.+.++++....+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|++|+
T Consensus 257 ~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 336 (501)
T PRK11288 257 RLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPED 336 (501)
T ss_pred EEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcC
Confidence 35666666566899999999999999999999999999999999999999999999862 6899998
Q ss_pred C----CCCCCcHHHHHHhCCCCCh---h-hHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcC
Q psy850 125 A----WITNDTLRHNILFGEPFEP---Q-RYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSN 195 (280)
Q Consensus 125 ~----~l~~~Tv~enI~~g~~~~~---~-~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~ 195 (280)
+ .++..|+.+|+.++..... . ..............+..+ +. ....++++.+|||||||||+|||||+.+
T Consensus 337 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrl~la~al~~~ 414 (501)
T PRK11288 337 RKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSREQLIMNLSGGNQQKAILGRWLSED 414 (501)
T ss_pred HhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhc--CcccCCccCccccCCHHHHHHHHHHHHHccC
Confidence 6 3446799999987532100 0 000000001111222222 12 1235677889999999999999999999
Q ss_pred CchhhhhhhhhhccccCCCCceEEE
Q psy850 196 SFEQQTFHFLVLLCPCVSLQSILLM 220 (280)
Q Consensus 196 p~i~~~~~ll~ldep~~~l~~illl 220 (280)
| ++|||||||+++|.....
T Consensus 415 p------~lllLDEPt~~LD~~~~~ 433 (501)
T PRK11288 415 M------KVILLDEPTRGIDVGAKH 433 (501)
T ss_pred C------CEEEEcCCCCCCCHhHHH
Confidence 8 889999999999875443
No 299
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=4.5e-28 Score=240.59 Aligned_cols=138 Identities=23% Similarity=0.300 Sum_probs=103.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC-----------------eEEEEecCCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG-----------------TCAYVSQEAW 126 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G-----------------~ig~v~Q~~~ 126 (280)
.+|++|||+|.+||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++.
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 479999999999999999999999999999999999986 799998875 2799999974
Q ss_pred --CC-CCcHHHHHHhCC----CCChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCch
Q psy850 127 --IT-NDTLRHNILFGE----PFEPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFE 198 (280)
Q Consensus 127 --l~-~~Tv~enI~~g~----~~~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i 198 (280)
++ ..++.+|+.+.. ..........+ ...+..+.-.. ....++++.+|||||||||+|||||+.+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p-- 175 (529)
T PRK15134 103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEI-----LNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRP-- 175 (529)
T ss_pred hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCC--
Confidence 33 458999986421 11111111111 11222221111 11346778899999999999999999998
Q ss_pred hhhhhhhhhccccCCCCce
Q psy850 199 QQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 199 ~~~~~ll~ldep~~~l~~i 217 (280)
++|+|||||+++|+.
T Consensus 176 ----~llllDEPt~~LD~~ 190 (529)
T PRK15134 176 ----ELLIADEPTTALDVS 190 (529)
T ss_pred ----CEEEEcCCCCccCHH
Confidence 889999999999764
No 300
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7e-28 Score=239.31 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=106.4
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCC--CC-CCcHHHHHHhCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAW--IT-NDTLRHNILFGEPF 142 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~--l~-~~Tv~enI~~g~~~ 142 (280)
+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++. ++ ..|+++|+.+....
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~ 411 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQE 411 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccC
Confidence 4589999999999999999999999999999999999999999999987 6899999863 33 46999998642111
Q ss_pred ChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEE
Q psy850 143 EPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILL 219 (280)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ill 219 (280)
. .....+. ..+..+ +. ....++++.+|||||||||+|||||+.+| ++|||||||+++|..-.
T Consensus 412 ~--~~~~~~~-----~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p------~lllLDEPt~~LD~~~~ 474 (530)
T PRK15064 412 G--DDEQAVR-----GTLGRL--LFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKP------NVLVMDEPTNHMDMESI 474 (530)
T ss_pred C--ccHHHHH-----HHHHHc--CCChhHhcCcccccCHHHHHHHHHHHHHhcCC------CEEEEcCCCCCCCHHHH
Confidence 0 0011111 111111 11 12356778899999999999999999998 88999999999987543
No 301
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=2.7e-28 Score=239.88 Aligned_cols=131 Identities=24% Similarity=0.155 Sum_probs=101.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCC--------
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWI-------- 127 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l-------- 127 (280)
.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|. ++|++|++.+
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 96 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED 96 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence 3799999999999999999999999999999999999999999998752 6899998532
Q ss_pred -CCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 128 -TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 128 -~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
+..|+++|+.++. ...+.+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++|+
T Consensus 97 ~~~~~~~~~~~~~~-----~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p------~lll 158 (490)
T PRK10938 97 DTGRTTAEIIQDEV-----KDPARCE-----QLAQQF--GITALLDRRFKYLSTGETRKTLLCQALMSEP------DLLI 158 (490)
T ss_pred hccccHHHhcccch-----hHHHHHH-----HHHHHc--CCHhhhhCCcccCCHHHHHHHHHHHHHHcCC------CEEE
Confidence 1357888775431 0111111 112221 2233456778899999999999999999998 8899
Q ss_pred hccccCCCCce
Q psy850 207 LLCPCVSLQSI 217 (280)
Q Consensus 207 ldep~~~l~~i 217 (280)
|||||+++|+.
T Consensus 159 LDEPt~~LD~~ 169 (490)
T PRK10938 159 LDEPFDGLDVA 169 (490)
T ss_pred EcCCcccCCHH
Confidence 99999999763
No 302
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=2.4e-28 Score=242.00 Aligned_cols=142 Identities=21% Similarity=0.284 Sum_probs=107.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC-C-------------------eEEEEecCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE-G-------------------TCAYVSQEAWI 127 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~-G-------------------~ig~v~Q~~~l 127 (280)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ | +++|++|++.+
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 376 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence 458999999999999999999999999999999999999999999984 3 27999999765
Q ss_pred C-CCcHHHHHHhCCCC--ChhhHHHHHHHhhhhhhHhhCCCCC---chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhh
Q psy850 128 T-NDTLRHNILFGEPF--EPQRYYKTLYNCALNTDIHILPGGD---QTEIGERGINLSGGQKQRVALARALYSNSFEQQT 201 (280)
Q Consensus 128 ~-~~Tv~enI~~g~~~--~~~~~~~~~~~~~l~~~l~~l~~g~---~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~ 201 (280)
+ ..|+.+|+.+.... ........+ ...+..+.-.. ....++++.+|||||||||+|||||+.+|
T Consensus 377 ~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p----- 446 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGLELPDELARMKA-----VITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEP----- 446 (520)
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHH-----HHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCC-----
Confidence 5 57999999763211 111111111 11122221111 11356778899999999999999999998
Q ss_pred hhhhhhccccCCCCceEEE
Q psy850 202 FHFLVLLCPCVSLQSILLM 220 (280)
Q Consensus 202 ~~ll~ldep~~~l~~illl 220 (280)
++|||||||+++|....-
T Consensus 447 -~lLllDEPt~~LD~~~~~ 464 (520)
T TIGR03269 447 -RIVILDEPTGTMDPITKV 464 (520)
T ss_pred -CEEEEeCCcccCCHHHHH
Confidence 889999999999875433
No 303
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=8.3e-28 Score=240.06 Aligned_cols=147 Identities=26% Similarity=0.317 Sum_probs=110.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCC-CC-CCcHHHHHHhCCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAW-IT-NDTLRHNILFGEPFE 143 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~-l~-~~Tv~enI~~g~~~~ 143 (280)
+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++. ++ ..|+.+|+.++....
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~ 414 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDII 414 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhcccc
Confidence 4589999999999999999999999999999999999999999999965 5899999862 44 579999998764211
Q ss_pred h-hhHHHHHHHhhhhhhHhhCCCCCch-hhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEEEe
Q psy850 144 P-QRYYKTLYNCALNTDIHILPGGDQT-EIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLME 221 (280)
Q Consensus 144 ~-~~~~~~~~~~~l~~~l~~l~~g~~~-~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~illlD 221 (280)
. ........ ..+..+ +... ..++++.+|||||||||+|||||+.+| ++|||||||+++|..-...
T Consensus 415 ~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p------~lllLDEPt~~LD~~~~~~ 481 (552)
T TIGR03719 415 QLGKREVPSR-----AYVGRF--NFKGSDQQKKVGQLSGGERNRVHLAKTLKSGG------NVLLLDEPTNDLDVETLRA 481 (552)
T ss_pred ccCcchHHHH-----HHHHhC--CCChhHhcCchhhCCHHHHHHHHHHHHHhhCC------CEEEEeCCCCCCCHHHHHH
Confidence 0 00000111 112222 2221 346678899999999999999999998 8899999999998744333
Q ss_pred ehhhhh
Q psy850 222 EVNVYV 227 (280)
Q Consensus 222 E~~~~~ 227 (280)
-.+++.
T Consensus 482 l~~~l~ 487 (552)
T TIGR03719 482 LEEALL 487 (552)
T ss_pred HHHHHH
Confidence 333333
No 304
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=5.4e-29 Score=215.43 Aligned_cols=148 Identities=26% Similarity=0.292 Sum_probs=113.4
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------------------EE
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------------------CA 119 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------------------ig 119 (280)
+...+|++|||+.++|+++.|||.+||||||+||||.=+..|+.|.|.++|. .+
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~ 96 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLG 96 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhh
Confidence 3456899999999999999999999999999999999999999999999873 48
Q ss_pred EEecCCCCC-CCcHHHHHHhCCC----CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhc
Q psy850 120 YVSQEAWIT-NDTLRHNILFGEP----FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYS 194 (280)
Q Consensus 120 ~v~Q~~~l~-~~Tv~enI~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~ 194 (280)
+|||+..+. ++||.||+.-.-- ..+........ . .+. ..|.....+.+|..|||||+||++|||||+.
T Consensus 97 mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae--~---~L~--kVGi~ek~~~YP~~LSGGQQQR~aIARaLam 169 (256)
T COG4598 97 MVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAE--K---YLA--KVGIAEKADAYPAHLSGGQQQRVAIARALAM 169 (256)
T ss_pred HhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHH--H---HHH--HhCchhhhhcCccccCchHHHHHHHHHHHhc
Confidence 999998765 7899999975310 11111111111 1 111 1144445567899999999999999999999
Q ss_pred CCchhhhhhhhhhccccCCCCceEEEeehhhh
Q psy850 195 NSFEQQTFHFLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 195 ~p~i~~~~~ll~ldep~~~l~~illlDE~~~~ 226 (280)
+| +.++.|||||++|+-|+=+-+.++
T Consensus 170 eP------~vmLFDEPTSALDPElVgEVLkv~ 195 (256)
T COG4598 170 EP------EVMLFDEPTSALDPELVGEVLKVM 195 (256)
T ss_pred CC------ceEeecCCcccCCHHHHHHHHHHH
Confidence 98 778999999999986654444443
No 305
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=2.6e-28 Score=240.89 Aligned_cols=159 Identities=22% Similarity=0.355 Sum_probs=115.2
Q ss_pred ccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--------------eEEEEecC
Q psy850 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------------TCAYVSQE 124 (280)
Q Consensus 59 ~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--------------~ig~v~Q~ 124 (280)
.++++++.. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 257 ~l~~~~l~~-~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~ 335 (501)
T PRK10762 257 RLKVDNLSG-PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISED 335 (501)
T ss_pred EEEEeCccc-CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCc
Confidence 466677654 479999999999999999999999999999999999999999999987 27999999
Q ss_pred C---CC-CCCcHHHHHHhCCC--CCh--hhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcC
Q psy850 125 A---WI-TNDTLRHNILFGEP--FEP--QRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSN 195 (280)
Q Consensus 125 ~---~l-~~~Tv~enI~~g~~--~~~--~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~ 195 (280)
+ .+ +..|+.+|+.++.. ... ...............+..+ +. ....++++.+|||||||||+|||||+.+
T Consensus 336 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqrv~lA~al~~~ 413 (501)
T PRK10762 336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQKVAIARGLMTR 413 (501)
T ss_pred cccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhc--CCCCCCccCchhhCCHHHHHHHHHHHHHhhC
Confidence 6 23 46799999987421 000 0000000000111222222 22 1235677889999999999999999999
Q ss_pred CchhhhhhhhhhccccCCCCceEEEeehhhh
Q psy850 196 SFEQQTFHFLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 196 p~i~~~~~ll~ldep~~~l~~illlDE~~~~ 226 (280)
| ++|||||||+++|..-.-.-.+++
T Consensus 414 p------~lllLDEPt~~LD~~~~~~l~~~l 438 (501)
T PRK10762 414 P------KVLILDEPTRGVDVGAKKEIYQLI 438 (501)
T ss_pred C------CEEEEcCCCCCCCHhHHHHHHHHH
Confidence 8 889999999999875443333333
No 306
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=2.9e-28 Score=242.00 Aligned_cols=145 Identities=24% Similarity=0.330 Sum_probs=109.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------------eEEEEecCC--CCC-
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------------TCAYVSQEA--WIT- 128 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------------~ig~v~Q~~--~l~- 128 (280)
+.+|++|||+|++||+++|+||||||||||+++|+|+++ ++|+|.++| .++|++|++ .++
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~ 377 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP 377 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence 468999999999999999999999999999999999985 899999887 279999997 244
Q ss_pred CCcHHHHHHhCCCC-----ChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 129 NDTLRHNILFGEPF-----EPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 129 ~~Tv~enI~~g~~~-----~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
..|+.+|+.++... ........ ....+..+ +.. ...++++.+|||||||||+|||||+.+|
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p------ 444 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQ-----VIAVMEEV--GLDPETRHRYPAEFSGGQRQRIAIARALILKP------ 444 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHH-----HHHHHHHc--CCCHHHHhcCCccCCHHHHHHHHHHHHHhCCC------
Confidence 57999999875211 11111111 11122222 222 2356778899999999999999999998
Q ss_pred hhhhhccccCCCCceEEEeehhhh
Q psy850 203 HFLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 203 ~ll~ldep~~~l~~illlDE~~~~ 226 (280)
++|||||||+++|......-.+++
T Consensus 445 ~llllDEPt~~LD~~~~~~l~~~l 468 (529)
T PRK15134 445 SLIILDEPTSSLDKTVQAQILALL 468 (529)
T ss_pred CEEEeeCCccccCHHHHHHHHHHH
Confidence 889999999999875443333333
No 307
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=9.3e-29 Score=229.52 Aligned_cols=153 Identities=25% Similarity=0.299 Sum_probs=110.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-C----CCceEEECC-----------------eEEEEecCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-S----TAGKLSREG-----------------TCAYVSQEA 125 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-p----~~G~I~i~G-----------------~ig~v~Q~~ 125 (280)
..+++||||+|++||++||||+|||||||+.++|+|+++ | .+|+|.++| .|+|+||+|
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 358999999999999999999999999999999999998 3 578999887 389999997
Q ss_pred C--C-CCCcHHHHHHhCCC----C-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCc
Q psy850 126 W--I-TNDTLRHNILFGEP----F-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSF 197 (280)
Q Consensus 126 ~--l-~~~Tv~enI~~g~~----~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~ 197 (280)
. + +-.||.+.+.-... . ..++..+.+. .+...+. ++ .....++.+|++|||||||||.||.||+.+|
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~--~~L~~Vg-i~-~~~~~~~~YPhelSGGMrQRV~IAmala~~P- 172 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAI--ELLELVG-IP-DPERRLKSYPHELSGGMRQRVMIAMALALNP- 172 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHH--HHHHHcC-CC-CHHHHHhhCCcccCCcHHHHHHHHHHHhCCC-
Confidence 3 2 23477666542211 1 0110111111 1111111 11 1223568899999999999999999999998
Q ss_pred hhhhhhhhhhccccCCCCceEEEeehhhhhccC
Q psy850 198 EQQTFHFLVLLCPCVSLQSILLMEEVNVYVSKP 230 (280)
Q Consensus 198 i~~~~~ll~ldep~~~l~~illlDE~~~~~~~~ 230 (280)
++||+||||++||.+.....++++.+.+
T Consensus 173 -----~LlIADEPTTALDvt~QaqIl~Ll~~l~ 200 (316)
T COG0444 173 -----KLLIADEPTTALDVTVQAQILDLLKELQ 200 (316)
T ss_pred -----CEEEeCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999998876665555555544
No 308
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=9e-28 Score=240.08 Aligned_cols=147 Identities=25% Similarity=0.300 Sum_probs=110.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCC-CCC-CCcHHHHHHhCCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEA-WIT-NDTLRHNILFGEPFE 143 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~-~l~-~~Tv~enI~~g~~~~ 143 (280)
+.+|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++ .++ ..|+++|+.++....
T Consensus 337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~ 416 (556)
T PRK11819 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDII 416 (556)
T ss_pred eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccc
Confidence 4589999999999999999999999999999999999999999999965 589999986 444 579999998753211
Q ss_pred h-hhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEEEe
Q psy850 144 P-QRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLME 221 (280)
Q Consensus 144 ~-~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~illlD 221 (280)
. ........ ..+..+ +.. ...++++.+|||||||||+|||||+.+| ++|||||||+++|..-...
T Consensus 417 ~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p------~lllLDEPt~~LD~~~~~~ 483 (556)
T PRK11819 417 KVGNREIPSR-----AYVGRF--NFKGGDQQKKVGVLSGGERNRLHLAKTLKQGG------NVLLLDEPTNDLDVETLRA 483 (556)
T ss_pred cccccHHHHH-----HHHHhC--CCChhHhcCchhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCCCCCCHHHHHH
Confidence 0 00000111 112222 121 2346678899999999999999999998 8899999999998644333
Q ss_pred ehhhhh
Q psy850 222 EVNVYV 227 (280)
Q Consensus 222 E~~~~~ 227 (280)
-.+++.
T Consensus 484 l~~~l~ 489 (556)
T PRK11819 484 LEEALL 489 (556)
T ss_pred HHHHHH
Confidence 333333
No 309
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.2e-28 Score=240.51 Aligned_cols=150 Identities=23% Similarity=0.294 Sum_probs=109.7
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCceEEECCe--------------EEEEecCC---CCC-
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-STAGKLSREGT--------------CAYVSQEA---WIT- 128 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-p~~G~I~i~G~--------------ig~v~Q~~---~l~- 128 (280)
..+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+ ++|++|++ .++
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 458999999999999999999999999999999999998 59999999762 79999985 243
Q ss_pred CCcHHHHHHhCCC--CCh-hhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGEP--FEP-QRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~~--~~~-~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
..|+.+|+.++.. +.. ...............+..+ +.. ...++++.+|||||||||+|||||+.+| ++
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p------~l 426 (506)
T PRK13549 355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL--KVKTASPELAIARLSGGNQQKAVLAKCLLLNP------KI 426 (506)
T ss_pred CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc--CccCCCcccccccCCHHHHHHHHHHHHHhhCC------CE
Confidence 6799999987531 100 0000000001111222222 222 2356778899999999999999999998 88
Q ss_pred hhhccccCCCCceEEEeehhh
Q psy850 205 LVLLCPCVSLQSILLMEEVNV 225 (280)
Q Consensus 205 l~ldep~~~l~~illlDE~~~ 225 (280)
|||||||+++|..-...-.++
T Consensus 427 llLDEPt~~LD~~~~~~l~~~ 447 (506)
T PRK13549 427 LILDEPTRGIDVGAKYEIYKL 447 (506)
T ss_pred EEEcCCCCCcCHhHHHHHHHH
Confidence 999999999988544333333
No 310
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=1.1e-27 Score=215.10 Aligned_cols=142 Identities=18% Similarity=0.146 Sum_probs=96.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEECC--------------eEEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL--RSTAGKLSREG--------------TCAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~--~p~~G~I~i~G--------------~ig~v~Q~~~l~-~~T 131 (280)
.+|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.++| .++|++|++.++ ..+
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 94 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVS 94 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchh
Confidence 4799999999999999999999999999999999995 69999999886 278999997654 335
Q ss_pred HHHHHHhCCC----CChhhHHHHHH-HhhhhhhHhhCCCCCchhhccCCC-CCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 132 LRHNILFGEP----FEPQRYYKTLY-NCALNTDIHILPGGDQTEIGERGI-NLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 132 v~enI~~g~~----~~~~~~~~~~~-~~~l~~~l~~l~~g~~~~i~~~~~-~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
..+++.+... ........... .......+..+.. ........+. +|||||||||+|||||+.+| ++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~LS~G~~qrv~laral~~~p------~il 167 (248)
T PRK09580 95 NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-PEDLLTRSVNVGFSGGEKKRNDILQMAVLEP------ELC 167 (248)
T ss_pred HHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-ChhhcccCCCCCCCHHHHHHHHHHHHHHcCC------CEE
Confidence 5554432110 00000000000 0001111111110 0111223343 79999999999999999998 889
Q ss_pred hhccccCCCCce
Q psy850 206 VLLCPCVSLQSI 217 (280)
Q Consensus 206 ~ldep~~~l~~i 217 (280)
+||||++++|..
T Consensus 168 lLDEPt~~LD~~ 179 (248)
T PRK09580 168 ILDESDSGLDID 179 (248)
T ss_pred EEeCCCccCCHH
Confidence 999999999874
No 311
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=2.7e-28 Score=216.20 Aligned_cols=135 Identities=16% Similarity=0.089 Sum_probs=100.2
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-ECCeEEEEecCCCCC-CCcHHHHHHhCCCCChhhH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS-REGTCAYVSQEAWIT-NDTLRHNILFGEPFEPQRY 147 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~-i~G~ig~v~Q~~~l~-~~Tv~enI~~g~~~~~~~~ 147 (280)
+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|. +++....+.+.+.++ ..|+++|+.+.........
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 777644455555555 4699999976422110000
Q ss_pred HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 148 YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 148 ~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.+....+. . .. +.....+.++..||||||||++|||||+.+| +++++|||+.++|..
T Consensus 82 ~~~~~~~~--~-~~----~l~~~~~~~~~~lS~G~~qrv~la~al~~~p------~llllDEP~~~lD~~ 138 (213)
T PRK15177 82 DEFSHFCY--Q-LT----QLEQCYTDRVSEYSVTMKTHLAFAINLLLPC------RLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHH--H-Hh----ChhHHhhchHhhcCHHHHHHHHHHHHHhcCC------CEEEECCCCccCCHH
Confidence 11111110 0 00 1122244567789999999999999999998 789999999988774
No 312
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=9.6e-28 Score=234.99 Aligned_cols=140 Identities=24% Similarity=0.261 Sum_probs=109.4
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCC-CCCcH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWI-TNDTL 132 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l-~~~Tv 132 (280)
..+|++|||++.+||+++|+|.||||||||+|+|+|.++|++|+|.++|+ |+.|+|+..+ +++||
T Consensus 21 V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsV 100 (500)
T COG1129 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSV 100 (500)
T ss_pred ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccH
Confidence 46899999999999999999999999999999999999999999999995 7899999765 57899
Q ss_pred HHHHHhCCCCChh--hH-HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 133 RHNILFGEPFEPQ--RY-YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 133 ~enI~~g~~~~~~--~~-~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
.|||.+|+..... .. ++.+.. .....+..+. .....+.+..+||.||||.|+|||||..++ ++|||||
T Consensus 101 aeNifLgre~~~~~g~id~~~m~~-~A~~~l~~lg--~~~~~~~~v~~LsiaqrQ~VeIArAl~~~a------rllIlDE 171 (500)
T COG1129 101 AENIFLGREPTRRFGLIDRKAMRR-RARELLARLG--LDIDPDTLVGDLSIAQRQMVEIARALSFDA------RVLILDE 171 (500)
T ss_pred HHHhhcccccccCCCccCHHHHHH-HHHHHHHHcC--CCCChhhhhhhCCHHHHHHHHHHHHHhcCC------CEEEEcC
Confidence 9999998764321 00 111111 1111222221 111255667789999999999999999998 8999999
Q ss_pred ccCCCCc
Q psy850 210 PCVSLQS 216 (280)
Q Consensus 210 p~~~l~~ 216 (280)
||++|..
T Consensus 172 PTaaLt~ 178 (500)
T COG1129 172 PTAALTV 178 (500)
T ss_pred CcccCCH
Confidence 9999954
No 313
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=7.5e-28 Score=204.92 Aligned_cols=104 Identities=27% Similarity=0.373 Sum_probs=80.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYY 148 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~ 148 (280)
++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.-. . ..+..+.
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~--~------~~~~~~~------------- 72 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV--S------FASPRDA------------- 72 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC--C------cCCHHHH-------------
Confidence 479999999999999999999999999999999999999999999987411 0 0011000
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceE
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~il 218 (280)
.. ..+.. ..+||||||||++|||||+.+| ++|++|||++++|.--
T Consensus 73 --~~-----~~i~~------------~~qLS~G~~qrl~laral~~~p------~illlDEP~~~LD~~~ 117 (163)
T cd03216 73 --RR-----AGIAM------------VYQLSVGERQMVEIARALARNA------RLLILDEPTAALTPAE 117 (163)
T ss_pred --Hh-----cCeEE------------EEecCHHHHHHHHHHHHHhcCC------CEEEEECCCcCCCHHH
Confidence 00 00000 0129999999999999999998 7889999999998643
No 314
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.95 E-value=3.2e-28 Score=209.86 Aligned_cols=119 Identities=30% Similarity=0.413 Sum_probs=87.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYY 148 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~ 148 (280)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.-. .+ ......+..+.+ ..
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~--~~---~~~~~~~~~i~~--------~~ 79 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL--AS---LSPKELARKIAY--------VP 79 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC--Cc---CCHHHHHHHHhH--------HH
Confidence 479999999999999999999999999999999999999999999987421 01 000011122211 01
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+.+... +......+++.+||||||||++|||||+.+| ++++||||+.++|.-
T Consensus 80 q~l~~~-----------gl~~~~~~~~~~LS~G~~qrl~laral~~~p------~llllDEP~~~LD~~ 131 (180)
T cd03214 80 QALELL-----------GLAHLADRPFNELSGGERQRVLLARALAQEP------PILLLDEPTSHLDIA 131 (180)
T ss_pred HHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHHHHhcCC------CEEEEeCCccCCCHH
Confidence 111111 1122234567789999999999999999998 888999999999863
No 315
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.95 E-value=6.7e-28 Score=214.62 Aligned_cols=129 Identities=29% Similarity=0.390 Sum_probs=98.7
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------EEEEecCCCC---CCCcHHHHHHhCCCC--
Q psy850 76 FFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------CAYVSQEAWI---TNDTLRHNILFGEPF-- 142 (280)
Q Consensus 76 l~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------ig~v~Q~~~l---~~~Tv~enI~~g~~~-- 142 (280)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+ +..|+.+|+.++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999983 8999999754 346999999875321
Q ss_pred -----ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 143 -----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 143 -----~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
........+. ..++.+ +.....+.++.+|||||||||+|||||+.+| ++||+|||++++|..
T Consensus 81 ~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p------~llilDEP~~~LD~~ 147 (223)
T TIGR03771 81 GWLRRPCVADFAAVR-----DALRRV--GLTELADRPVGELSGGQRQRVLVARALATRP------SVLLLDEPFTGLDMP 147 (223)
T ss_pred ccccCCcHHHHHHHH-----HHHHHh--CCchhhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccCCHH
Confidence 0001111111 111111 1223345667889999999999999999998 889999999999764
No 316
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=6.9e-28 Score=233.22 Aligned_cols=136 Identities=24% Similarity=0.362 Sum_probs=109.6
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCC-CCcH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWIT-NDTL 132 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~Tv 132 (280)
..++++|||+|++||+.||+|+||||||||+++|.|+++|++|+|.++|+ ||+|+|++.+. +.||
T Consensus 17 ~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV 96 (501)
T COG3845 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTV 96 (501)
T ss_pred EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccch
Confidence 45789999999999999999999999999999999999999999999995 79999998765 7799
Q ss_pred HHHHHhCCCCC------hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 133 RHNILFGEPFE------PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 133 ~enI~~g~~~~------~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
.|||.+|.... .....+.+... .+.+ +..-..+.+..+||=||||||.|-+|||+++ ++||
T Consensus 97 ~ENiiLg~e~~~~~~~~~~~~~~~i~~l-----~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a------~iLI 163 (501)
T COG3845 97 AENIILGLEPSKGGLIDRRQARARIKEL-----SERY--GLPVDPDAKVADLSVGEQQRVEILKALYRGA------RLLI 163 (501)
T ss_pred hhhhhhcCccccccccCHHHHHHHHHHH-----HHHh--CCCCCccceeecCCcchhHHHHHHHHHhcCC------CEEE
Confidence 99999987532 11112222111 1111 3333445677889999999999999999998 8899
Q ss_pred hccccCCCCc
Q psy850 207 LLCPCVSLQS 216 (280)
Q Consensus 207 ldep~~~l~~ 216 (280)
|||||+-|.+
T Consensus 164 LDEPTaVLTP 173 (501)
T COG3845 164 LDEPTAVLTP 173 (501)
T ss_pred EcCCcccCCH
Confidence 9999998855
No 317
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=2.7e-27 Score=240.14 Aligned_cols=137 Identities=23% Similarity=0.281 Sum_probs=105.2
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCC-CC-CCCcHHHHHHhCCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEA-WI-TNDTLRHNILFGEPFE 143 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~-~l-~~~Tv~enI~~g~~~~ 143 (280)
+.+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. .++|++|++ .+ ...||.+|+.++....
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~ 411 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEV 411 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccc
Confidence 4589999999999999999999999999999999999999999999853 489999985 33 4669999998753210
Q ss_pred -hhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 144 -PQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 144 -~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.......+ ...+..+ +. ......++.+|||||||||+|||||+.+| ++|||||||+++|..
T Consensus 412 ~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~al~~~p------~lLlLDEPt~~LD~~ 474 (635)
T PRK11147 412 MVNGRPRHV-----LGYLQDF--LFHPKRAMTPVKALSGGERNRLLLARLFLKPS------NLLILDEPTNDLDVE 474 (635)
T ss_pred cccchHHHH-----HHHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCCCCCCHH
Confidence 00001111 1112111 11 12345677889999999999999999998 889999999999753
No 318
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=6.1e-28 Score=237.91 Aligned_cols=142 Identities=23% Similarity=0.283 Sum_probs=105.9
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCceEEECC--------------eEEEEecCC----CCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKLSREG--------------TCAYVSQEA----WIT 128 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-~~G~I~i~G--------------~ig~v~Q~~----~l~ 128 (280)
..+|+++||+|++||+++|+|||||||||||++|+|+++| ++|+|.++| +++|++|++ .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 4589999999999999999999999999999999999995 899999976 269999995 334
Q ss_pred CCcHHHHHHhCCC--CCh-hhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGEP--FEP-QRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~~--~~~-~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
..|+++|+.++.. ... ...............+..+ +.. ...++++.+|||||||||+|||||+.+| ++
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p------~l 424 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQQKAVLAKMLLTNP------RV 424 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCccccCCHHHHHHHHHHHHHhhCC------CE
Confidence 6799999987531 100 0000000001111222222 121 1245678899999999999999999998 88
Q ss_pred hhhccccCCCCce
Q psy850 205 LVLLCPCVSLQSI 217 (280)
Q Consensus 205 l~ldep~~~l~~i 217 (280)
|||||||+++|..
T Consensus 425 llLDEPt~~LD~~ 437 (500)
T TIGR02633 425 LILDEPTRGVDVG 437 (500)
T ss_pred EEEcCCCCCcCHh
Confidence 9999999999874
No 319
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=1.8e-27 Score=199.08 Aligned_cols=89 Identities=36% Similarity=0.534 Sum_probs=83.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCCCCCcHHHHHHhCCCCChhh
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWITNDTLRHNILFGEPFEPQR 146 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~ 146 (280)
.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~----------------------- 70 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ----------------------- 70 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-----------------------
Confidence 479999999999999999999999999999999999999999999997 4778877
Q ss_pred HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 147 YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 147 ~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
||+||+||++|||||+.+| +++++|||++++|.-
T Consensus 71 -------------------------------lS~G~~~rv~laral~~~p------~illlDEP~~~LD~~ 104 (144)
T cd03221 71 -------------------------------LSGGEKMRLALAKLLLENP------NLLLLDEPTNHLDLE 104 (144)
T ss_pred -------------------------------CCHHHHHHHHHHHHHhcCC------CEEEEeCCccCCCHH
Confidence 9999999999999999998 788999999999863
No 320
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=4.3e-27 Score=232.58 Aligned_cols=137 Identities=24% Similarity=0.245 Sum_probs=105.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCC-CCcHHHHHHhCCC---CC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT-NDTLRHNILFGEP---FE 143 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~-~~Tv~enI~~g~~---~~ 143 (280)
+.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|...++.+.+.+. ..|+++|+.+... ..
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~ 116 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT 116 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence 4589999999999999999999999999999999999999999999999766665554443 5699999976421 11
Q ss_pred hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 144 PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 144 ~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.....+.+. ..+..+ +....+.+++.+|||||||||+|||||+.+| ++||||||++++|..
T Consensus 117 ~~e~~e~i~-----elLe~l--gL~~~ld~~~~~LSGGQrQRVaLArAL~~~P------~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 117 KEKIKEIIP-----EIIEFA--DIGKFIYQPVKTYSSGMKSRLGFAISVHINP------DILVIDEALSVGDQT 177 (549)
T ss_pred HHHHHHHHH-----HHHHHc--CChhHhhCCcccCCHHHHHHHHHHHHHHhCC------CEEEEECCcccCCHH
Confidence 111111111 111111 2233456678899999999999999999998 889999999999875
No 321
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=2.5e-27 Score=238.74 Aligned_cols=142 Identities=20% Similarity=0.171 Sum_probs=110.0
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCC-CCCcHHHHHHhCCCCChhhHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI-TNDTLRHNILFGEPFEPQRYY 148 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l-~~~Tv~enI~~g~~~~~~~~~ 148 (280)
.|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++-.++|++|++.+ ++.||++|+.++.......
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~-- 431 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSS-- 431 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChH--
Confidence 5899999999999999999999999999999999999999999987679999999754 4679999998752111100
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEEEeehhhh
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~illlDE~~~~ 226 (280)
.. ....+..+ +.....++++.+|||||||||+|||||+.+| ++|||||||+++|..-...-.+++
T Consensus 432 ~~-----~~~~L~~l--~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p------~llLLDEPt~~LD~~~~~~l~~~l 496 (590)
T PRK13409 432 YY-----KSEIIKPL--QLERLLDKNVKDLSGGELQRVAIAACLSRDA------DLYLLDEPSAHLDVEQRLAVAKAI 496 (590)
T ss_pred HH-----HHHHHHHC--CCHHHHhCCcccCCHHHHHHHHHHHHHhcCC------CEEEEeCCccCCCHHHHHHHHHHH
Confidence 00 11112222 2234456788899999999999999999998 889999999999875443333333
No 322
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=1.2e-27 Score=236.98 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=113.8
Q ss_pred ccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecC
Q psy850 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQE 124 (280)
Q Consensus 59 ~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~ 124 (280)
.++++++.. .+|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+ ++|++|+
T Consensus 268 ~l~~~~l~~-~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK15439 268 VLTVEDLTG-EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPED 346 (510)
T ss_pred eEEEeCCCC-CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCC
Confidence 366677654 3699999999999999999999999999999999999999999999873 7999998
Q ss_pred C---CCC-CCcHHHHHHhCC----CCChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcC
Q psy850 125 A---WIT-NDTLRHNILFGE----PFEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSN 195 (280)
Q Consensus 125 ~---~l~-~~Tv~enI~~g~----~~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~ 195 (280)
+ .++ ..|+.+|+.... ...... .... ......+..+ +.. ...++++.+|||||||||+|||||+.+
T Consensus 347 ~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~--~~~~-~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~la~al~~~ 421 (510)
T PRK15439 347 RQSSGLYLDAPLAWNVCALTHNRRGFWIKP--AREN-AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVLIAKCLEAS 421 (510)
T ss_pred hhhCCccCCCcHHHHHHhhhhhhhccccCh--HHHH-HHHHHHHHHc--CCCCCCccCccccCCcHHHHHHHHHHHHhhC
Confidence 4 233 569999985421 000000 0000 0111222222 222 235677889999999999999999999
Q ss_pred CchhhhhhhhhhccccCCCCceEEEeehhhh
Q psy850 196 SFEQQTFHFLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 196 p~i~~~~~ll~ldep~~~l~~illlDE~~~~ 226 (280)
| ++|||||||+++|..-.-.-.+++
T Consensus 422 p------~lLlLDEPt~gLD~~~~~~l~~~l 446 (510)
T PRK15439 422 P------QLLIVDEPTRGVDVSARNDIYQLI 446 (510)
T ss_pred C------CEEEECCCCcCcChhHHHHHHHHH
Confidence 8 889999999999875544333333
No 323
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=2.9e-28 Score=221.89 Aligned_cols=133 Identities=26% Similarity=0.294 Sum_probs=104.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYY 148 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~ 148 (280)
.+++||||+|++||+++|||+|||||||+-|+|+|+++|++|+|.++|+-.. ..+ .....++..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~--------~~~--------~~~~~~~v~ 90 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT--------KLS--------KEERRERVL 90 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh--------hcc--------hhHHHHHHH
Confidence 5899999999999999999999999999999999999999999999985411 001 000011122
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEEEeehhhhhc
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEEVNVYVS 228 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~illlDE~~~~~~ 228 (280)
+.+.... .....+.+++++|||||||||+|||||+.+| +++++|||++++|..+....+|++.|
T Consensus 91 elL~~Vg----------l~~~~~~ryPhelSGGQrQRi~IARALal~P------~liV~DEpvSaLDvSiqaqIlnLL~d 154 (268)
T COG4608 91 ELLEKVG----------LPEEFLYRYPHELSGGQRQRIGIARALALNP------KLIVADEPVSALDVSVQAQILNLLKD 154 (268)
T ss_pred HHHHHhC----------CCHHHhhcCCcccCchhhhhHHHHHHHhhCC------cEEEecCchhhcchhHHHHHHHHHHH
Confidence 2222211 1234567899999999999999999999998 99999999999999888888888888
Q ss_pred cCccc
Q psy850 229 KPIDK 233 (280)
Q Consensus 229 ~~~~~ 233 (280)
.+-..
T Consensus 155 lq~~~ 159 (268)
T COG4608 155 LQEEL 159 (268)
T ss_pred HHHHh
Confidence 76544
No 324
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=1.6e-27 Score=234.87 Aligned_cols=151 Identities=25% Similarity=0.319 Sum_probs=112.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC----CceEEECCe-----------------EEEEecCCC-
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST----AGKLSREGT-----------------CAYVSQEAW- 126 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~----~G~I~i~G~-----------------ig~v~Q~~~- 126 (280)
.+++||||+|.+||++||+|+|||||||+.++|.|++++. +|+|.++|+ |+|+||+|+
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 4899999999999999999999999999999999999987 799999873 899999974
Q ss_pred -C-CCCcHHHHHHhC----CCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhh
Q psy850 127 -I-TNDTLRHNILFG----EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQ 200 (280)
Q Consensus 127 -l-~~~Tv~enI~~g----~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~ 200 (280)
+ +-.||.+.|.-. .....+...+... .+...+ .++..... +++|++|||||||||.||+||+.+|
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~--elL~~V-gl~~~~~~--~~yPheLSGG~rQRv~iAmALa~~P---- 173 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAV--ELLEQV-GLPDPERR--DRYPHQLSGGMRQRVMIAMALALKP---- 173 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHH--HHHHHc-CCCChhhh--ccCCcccCchHHHHHHHHHHHhCCC----
Confidence 2 235777666431 1111111111111 111111 12221111 5699999999999999999999998
Q ss_pred hhhhhhhccccCCCCceEEEeehhhhhccC
Q psy850 201 TFHFLVLLCPCVSLQSILLMEEVNVYVSKP 230 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~illlDE~~~~~~~~ 230 (280)
++||+||||.+||....-+.++++.+..
T Consensus 174 --~LLIaDEPTTaLDvt~q~qIL~llk~l~ 201 (539)
T COG1123 174 --KLLIADEPTTALDVTTQAQILDLLKDLQ 201 (539)
T ss_pred --CEEEECCCccccCHHHHHHHHHHHHHHH
Confidence 8999999999999887777777666655
No 325
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.5e-27 Score=201.41 Aligned_cols=140 Identities=31% Similarity=0.423 Sum_probs=110.7
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEECC-----------eEEEEecCCCCC-CCc
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST---AGKLSREG-----------TCAYVSQEAWIT-NDT 131 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~---~G~I~i~G-----------~ig~v~Q~~~l~-~~T 131 (280)
+...|.++||+|.+||++.|+||+|||||||+..+.|.+.+. .|++.+++ ++|++||++|+| +.+
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 456789999999999999999999999999999999998764 79999987 389999999987 679
Q ss_pred HHHHHHhCCCCChh-hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 132 LRHNILFGEPFEPQ-RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 132 v~enI~~g~~~~~~-~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
|.+|+.|..+.... +.++.....+++. .+......+.|.+||||||.||+|-|+|+..| ++++||||
T Consensus 94 Vg~Nl~fAlp~~~KG~aRr~~a~aAL~~------~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~P------k~lLLDEP 161 (213)
T COG4136 94 VGQNLLFALPATLKGNARRNAANAALER------SGLDGAFHQDPATLSGGQRARVALLRALLAQP------KALLLDEP 161 (213)
T ss_pred cccceEEecCcccccHHHHhhHHHHHHH------hccchhhhcChhhcCcchHHHHHHHHHHHhCc------ceeeeCCc
Confidence 99999997654321 1111111111111 13344455678899999999999999999998 99999999
Q ss_pred cCCCCceE
Q psy850 211 CVSLQSIL 218 (280)
Q Consensus 211 ~~~l~~il 218 (280)
+|.+|.-|
T Consensus 162 FS~LD~AL 169 (213)
T COG4136 162 FSRLDVAL 169 (213)
T ss_pred hhHHHHHH
Confidence 99987644
No 326
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=3.3e-27 Score=232.17 Aligned_cols=141 Identities=26% Similarity=0.286 Sum_probs=103.3
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCceEEECCe--------------EEEEecCCCCC---
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKLSREGT--------------CAYVSQEAWIT--- 128 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-~~G~I~i~G~--------------ig~v~Q~~~l~--- 128 (280)
++.+|+++||+|++||+++|+||||||||||+++|+|+.++ ++|+|.++|+ ++|++|++.++
T Consensus 272 ~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 34589999999999999999999999999999999998876 6999998762 79999986432
Q ss_pred CCcHHHHHHhCCC----C-C--hhhHHHHHHHhhhhhhHhhCCCCCch-hhccCCCCCCHHHHHHHHHHHHHhcCCchhh
Q psy850 129 NDTLRHNILFGEP----F-E--PQRYYKTLYNCALNTDIHILPGGDQT-EIGERGINLSGGQKQRVALARALYSNSFEQQ 200 (280)
Q Consensus 129 ~~Tv~enI~~g~~----~-~--~~~~~~~~~~~~l~~~l~~l~~g~~~-~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~ 200 (280)
..++++++.++.. . . .....+.+ ...+..+ +... ..++++.+|||||||||+|||||+.+|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p---- 420 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLA-----QQWLDIL--GIDKRTADAPFHSLSWGQQRLALIVRALVKHP---- 420 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHH-----HHHHHHc--CCchhhccCchhhCCHHHHHHHHHHHHHhcCC----
Confidence 2467776654311 0 0 01111111 1112222 2222 346677899999999999999999998
Q ss_pred hhhhhhhccccCCCCceEEE
Q psy850 201 TFHFLVLLCPCVSLQSILLM 220 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~illl 220 (280)
++|+|||||+++|..-..
T Consensus 421 --~lllLDEPt~gLD~~~~~ 438 (490)
T PRK10938 421 --TLLILDEPLQGLDPLNRQ 438 (490)
T ss_pred --CEEEEcCccccCCHHHHH
Confidence 889999999999864433
No 327
>KOG0054|consensus
Probab=99.94 E-value=4.3e-27 Score=251.03 Aligned_cols=147 Identities=31% Similarity=0.520 Sum_probs=135.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRH 134 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~e 134 (280)
..||++|||+|++||.+||||..|||||||+.+|.++.+|.+|+|.+|| +++.+||+|.+|.+|+|.
T Consensus 1153 p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~ 1232 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRF 1232 (1381)
T ss_pred cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccc
Confidence 5689999999999999999999999999999999999999999999998 378999999999999999
Q ss_pred HHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 135 NILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 135 nI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
|+---..+..++.+++++.|.+...+..+|.+++..+.+.|.++|-||||.++|||||++++
T Consensus 1233 NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~s------------------ 1294 (1381)
T KOG0054|consen 1233 NLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKS------------------ 1294 (1381)
T ss_pred ccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccC------------------
Confidence 99766667788899999999999999999999999999999999999999999999999998
Q ss_pred CceEEEeehhhhhccCccc
Q psy850 215 QSILLMEEVNVYVSKPIDK 233 (280)
Q Consensus 215 ~~illlDE~~~~~~~~~~~ 233 (280)
+||+|||+..-+|...|.
T Consensus 1295 -kILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1295 -KILVLDEATASVDPETDA 1312 (1381)
T ss_pred -CEEEEecccccCChHHHH
Confidence 778888888777776653
No 328
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=235.05 Aligned_cols=133 Identities=23% Similarity=0.371 Sum_probs=101.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCC--CCC-CCcHHHHHHhCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEA--WIT-NDTLRHNILFGEPF 142 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~--~l~-~~Tv~enI~~g~~~ 142 (280)
+.+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++ .++|++|+. .+. ..++.+++.....
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~- 403 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAP- 403 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCc-
Confidence 4589999999999999999999999999999999999999999999964 589999974 232 4477777642111
Q ss_pred ChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 143 EPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
......+ ...+..+ +. ......++.+|||||||||+|||||+.+| ++|||||||+++|.
T Consensus 404 --~~~~~~~-----~~~L~~~--~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p------~lLlLDEPt~~LD~ 463 (638)
T PRK10636 404 --QELEQKL-----RDYLGGF--GFQGDKVTEETRRFSGGEKARLVLALIVWQRP------NLLLLDEPTNHLDL 463 (638)
T ss_pred --hhhHHHH-----HHHHHHc--CCChhHhcCchhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCCCCCCH
Confidence 0111111 1112222 11 12345678899999999999999999998 88999999999975
No 329
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.7e-28 Score=211.93 Aligned_cols=141 Identities=28% Similarity=0.365 Sum_probs=107.5
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCC-CCc
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~-~~T 131 (280)
+.+.+++++|++|++|.++++||||||||||||.++++++++++|+|.++|. ++.+-|+..+. ..|
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 3467899999999999999999999999999999999999999999999984 46777876554 679
Q ss_pred HHHHHHhCCCCCh-hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 132 LRHNILFGEPFEP-QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 132 v~enI~~g~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
|++-+.||+.... -+.... ........++.+ .+...-+++..+||||||||..||+.++++. |+++||||
T Consensus 92 V~dLv~FGRfPYSqGRlt~e-D~~~I~~aieyl--~L~~l~dryLd~LSGGQrQRAfIAMVlaQdT------dyvlLDEP 162 (252)
T COG4604 92 VRDLVGFGRFPYSQGRLTKE-DRRIINEAIEYL--HLEDLSDRYLDELSGGQRQRAFIAMVLAQDT------DYVLLDEP 162 (252)
T ss_pred HHHHhhcCCCcccCCCCchH-HHHHHHHHHHHh--cccchHHHhHHhcccchhhhhhhheeeeccC------cEEEecCc
Confidence 9999999984321 111110 001111122222 1223335566789999999999999999997 88999999
Q ss_pred cCCCC
Q psy850 211 CVSLQ 215 (280)
Q Consensus 211 ~~~l~ 215 (280)
..++|
T Consensus 163 LNNLD 167 (252)
T COG4604 163 LNNLD 167 (252)
T ss_pred ccccc
Confidence 99986
No 330
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=1.3e-26 Score=256.23 Aligned_cols=138 Identities=20% Similarity=0.261 Sum_probs=110.2
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCCC-CCcHH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWIT-NDTLR 133 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l~-~~Tv~ 133 (280)
++.+|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|. +|||+|++.++ ..||+
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 356899999999999999999999999999999999999999999999883 79999998666 57999
Q ss_pred HHHHhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 134 HNILFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 134 enI~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
||+.+..... .....+.+ ...++.+ +.....++++.+|||||||||+|||||+.+| ++|+||||
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v-----~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi~~P------kVLLLDEP 1088 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEM-----EAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA------KVVVLDEP 1088 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEECC
Confidence 9998753211 11111111 1122222 3344567788899999999999999999998 88999999
Q ss_pred cCCCCce
Q psy850 211 CVSLQSI 217 (280)
Q Consensus 211 ~~~l~~i 217 (280)
|+++|+.
T Consensus 1089 TSGLDp~ 1095 (2272)
T TIGR01257 1089 TSGVDPY 1095 (2272)
T ss_pred CcCCCHH
Confidence 9999854
No 331
>PLN03211 ABC transporter G-25; Provisional
Probab=99.94 E-value=1.1e-26 Score=236.77 Aligned_cols=149 Identities=24% Similarity=0.355 Sum_probs=110.7
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CceEEECCe---------EEEEecCCCCC-CCcHHH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST--AGKLSREGT---------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~--~G~I~i~G~---------ig~v~Q~~~l~-~~Tv~e 134 (280)
++.+|+|||+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|+ ++||+|++.++ ..||+|
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 466999999999999999999999999999999999999885 899999984 79999998776 579999
Q ss_pred HHHhCCCC------ChhhHHHHHHHhhhhhhHhhC--CCCCchhhc-cCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 135 NILFGEPF------EPQRYYKTLYNCALNTDIHIL--PGGDQTEIG-ERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 135 nI~~g~~~------~~~~~~~~~~~~~l~~~l~~l--~~g~~~~i~-~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
|+.+.... ..++..+.+. ..++.+ .....+.++ +....|||||||||+|||||+.+| ++|
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~-----~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P------~iL 228 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAE-----SVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP------SLL 228 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHH-----HHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCC------CEE
Confidence 99875311 1111111111 111111 111123332 346789999999999999999998 889
Q ss_pred hhccccCCCCceEEEeehhhh
Q psy850 206 VLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 206 ~ldep~~~l~~illlDE~~~~ 226 (280)
+||||++++|..-..+-.+++
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L 249 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTL 249 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHH
Confidence 999999999875443333333
No 332
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=7.5e-27 Score=202.47 Aligned_cols=94 Identities=31% Similarity=0.407 Sum_probs=84.4
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-EEEEecCCCCCCCcHHHHHHhCCCCChh
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-CAYVSQEAWITNDTLRHNILFGEPFEPQ 145 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-ig~v~Q~~~l~~~Tv~enI~~g~~~~~~ 145 (280)
++.+++++ |+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~------------------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID------------------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC-------------------
Confidence 34578874 999999999999999999999999999999999999999984 788887532
Q ss_pred hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceE
Q psy850 146 RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 146 ~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~il 218 (280)
||||||||++|||||+.+| +++++|||++++|...
T Consensus 72 --------------------------------LSgGq~qrv~laral~~~p------~lllLDEPts~LD~~~ 106 (177)
T cd03222 72 --------------------------------LSGGELQRVAIAAALLRNA------TFYLFDEPSAYLDIEQ 106 (177)
T ss_pred --------------------------------CCHHHHHHHHHHHHHhcCC------CEEEEECCcccCCHHH
Confidence 9999999999999999998 8899999999998643
No 333
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.94 E-value=6.7e-27 Score=236.63 Aligned_cols=145 Identities=26% Similarity=0.384 Sum_probs=108.8
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEECCe----------EEEEecCCCCC-CCcH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST---AGKLSREGT----------CAYVSQEAWIT-NDTL 132 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~---~G~I~i~G~----------ig~v~Q~~~l~-~~Tv 132 (280)
++.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|. ++||+|+++++ ..||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 356899999999999999999999999999999999999875 799999985 59999999776 5699
Q ss_pred HHHHHhCCCCChhh-HHHHHHHhhhhhhHhhC--CCCCchhhccC--CCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 133 RHNILFGEPFEPQR-YYKTLYNCALNTDIHIL--PGGDQTEIGER--GINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 133 ~enI~~g~~~~~~~-~~~~~~~~~l~~~l~~l--~~g~~~~i~~~--~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
+||+.|+....... ..+..........++.+ ....++.+++. ...|||||||||+|||||+.+| ++++|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p------~vlll 190 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDP------PLLFC 190 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCC------CEEEe
Confidence 99999864321100 00000011111222221 22234555552 3579999999999999999998 78999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
|||++++|.-
T Consensus 191 DEPtsgLD~~ 200 (617)
T TIGR00955 191 DEPTSGLDSF 200 (617)
T ss_pred eCCCcchhHH
Confidence 9999999763
No 334
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2e-26 Score=234.03 Aligned_cols=144 Identities=24% Similarity=0.296 Sum_probs=102.6
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCCCCCcHHHHHHhCCCC-C-
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWITNDTLRHNILFGEPF-E- 143 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l~~~Tv~enI~~g~~~-~- 143 (280)
+.+|+||||+|.+|++++|+||||||||||||+|+|+++|++|+|.++| .++|++|++..+..++.+++.-.... .
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~ 93 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ 93 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHH
Confidence 3579999999999999999999999999999999999999999999987 47999997543345666555321100 0
Q ss_pred -------------hhhHHH---HHH-------HhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchh
Q psy850 144 -------------PQRYYK---TLY-------NCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQ 199 (280)
Q Consensus 144 -------------~~~~~~---~~~-------~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~ 199 (280)
...+.. ... .......+..+ +.. ...++++.+|||||||||+|||||+.+|
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P--- 168 (638)
T PRK10636 94 LEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERPVSDFSGGWRMRLNLAQALICRS--- 168 (638)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCchhhcCHHHHHHHHHHHHHccCC---
Confidence 000000 000 00011112222 222 2345677889999999999999999998
Q ss_pred hhhhhhhhccccCCCCceEE
Q psy850 200 QTFHFLVLLCPCVSLQSILL 219 (280)
Q Consensus 200 ~~~~ll~ldep~~~l~~ill 219 (280)
++|||||||+++|..-.
T Consensus 169 ---~lLLLDEPtn~LD~~~~ 185 (638)
T PRK10636 169 ---DLLLLDEPTNHLDLDAV 185 (638)
T ss_pred ---CEEEEcCCCCcCCHHHH
Confidence 88999999999987443
No 335
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=5.2e-27 Score=210.90 Aligned_cols=139 Identities=22% Similarity=0.361 Sum_probs=111.3
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC---------eEEEEecCCCCC-CCcHHHH
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---------TCAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G---------~ig~v~Q~~~l~-~~Tv~en 135 (280)
+++.|++||||++++|++++++|||||||||.+|+|+|+++|++|+|.++| +|||+|.+.-++ .+||.|.
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dq 92 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ 92 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHH
Confidence 356799999999999999999999999999999999999999999999998 699999997665 7899999
Q ss_pred HHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+.|-... ......+.+ ...+..+. ......++..+||-|++|++.+-.|++++| +|+|||||||
T Consensus 93 l~yla~LkGm~~~e~~~~~-----~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviHeP------eLlILDEPFS 159 (300)
T COG4152 93 LKYLAELKGMPKAEIQKKL-----QAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIHEP------ELLILDEPFS 159 (300)
T ss_pred HHHHHHhcCCcHHHHHHHH-----HHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhcCC------CEEEecCCcc
Confidence 9874322 122222222 22233221 122234566789999999999999999998 8999999999
Q ss_pred CCCce
Q psy850 213 SLQSI 217 (280)
Q Consensus 213 ~l~~i 217 (280)
+||++
T Consensus 160 GLDPV 164 (300)
T COG4152 160 GLDPV 164 (300)
T ss_pred CCChh
Confidence 99986
No 336
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=228.50 Aligned_cols=155 Identities=22% Similarity=0.309 Sum_probs=109.5
Q ss_pred ccccccc--ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEec
Q psy850 60 LKAEDVE--RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQ 123 (280)
Q Consensus 60 l~~~~~~--~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q 123 (280)
++++++. .+.+|++|||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++|++|
T Consensus 251 i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q 330 (491)
T PRK10982 251 LEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTE 330 (491)
T ss_pred EEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCC
Confidence 4555543 235899999999999999999999999999999999999999999999872 689999
Q ss_pred CCC---C-CCCcHHHHHHhC-----CCC----ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHH
Q psy850 124 EAW---I-TNDTLRHNILFG-----EPF----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALAR 190 (280)
Q Consensus 124 ~~~---l-~~~Tv~enI~~g-----~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LAR 190 (280)
++. + .+.++.+|+.+. ... ....... .....+..+... ....++++.+|||||||||+|||
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LSgGq~qrv~la~ 404 (491)
T PRK10982 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVK-TPGHRTQIGSLSGGNQQKVIIGR 404 (491)
T ss_pred chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCcc-CCCcccccccCCcHHHHHHHHHH
Confidence 842 3 356776663221 110 0011111 111122222111 11246778899999999999999
Q ss_pred HHhcCCchhhhhhhhhhccccCCCCceEEEeehhhh
Q psy850 191 ALYSNSFEQQTFHFLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 191 AL~~~p~i~~~~~ll~ldep~~~l~~illlDE~~~~ 226 (280)
||+.+| ++|||||||+++|..-.-.-.+++
T Consensus 405 al~~~p------~illLDEPt~gLD~~~~~~~~~~l 434 (491)
T PRK10982 405 WLLTQP------EILMLDEPTRGIDVGAKFEIYQLI 434 (491)
T ss_pred HHhcCC------CEEEEcCCCcccChhHHHHHHHHH
Confidence 999998 889999999999886544333333
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=7.3e-26 Score=232.45 Aligned_cols=132 Identities=27% Similarity=0.317 Sum_probs=99.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCCCCCcHHHHHHh--CC---
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWITNDTLRHNILF--GE--- 140 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l~~~Tv~enI~~--g~--- 140 (280)
..+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ +++|++|++. ...++.+|..+ ..
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~~l~~~~~~~~~~~~~~~ 600 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-DGLDLSSNPLLYMMRCFP 600 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-ccCCcchhHHHHHHHhcC
Confidence 3589999999999999999999999999999999999999999999876 5899999863 23344444321 10
Q ss_pred CCChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 141 PFEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.....+... .+..+ +.. ....+++.+|||||||||+|||||+.+| ++|||||||+++|..
T Consensus 601 ~~~~~~i~~---------~L~~~--gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p------~lLLLDEPT~~LD~~ 661 (718)
T PLN03073 601 GVPEQKLRA---------HLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKKP------HILLLDEPSNHLDLD 661 (718)
T ss_pred CCCHHHHHH---------HHHHC--CCChHHhcCCccccCHHHHHHHHHHHHHhcCC------CEEEEcCCCCCCCHH
Confidence 011111111 11111 111 2345678899999999999999999998 889999999999874
No 338
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.93 E-value=1.1e-26 Score=220.72 Aligned_cols=153 Identities=24% Similarity=0.310 Sum_probs=121.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCC---CC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAW---IT 128 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~---l~ 128 (280)
..++++|||++++||.++|||+||||||||-++|++++++. |+|+|.|+ +-.|||+|+ -+
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP 378 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP 378 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence 46899999999999999999999999999999999999876 99999983 678999985 34
Q ss_pred CCcHHHHHHhCCCCCh-----hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 129 NDTLRHNILFGEPFEP-----QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~~-----~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
.+||.+.|.-|...+. ....+.+.++..+. ..+.....++|+++|||||||++|||||+.+| +
T Consensus 379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV------GLDp~~r~RYPhEFSGGQRQRIAIARAliLkP------~ 446 (534)
T COG4172 379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV------GLDPATRNRYPHEFSGGQRQRIAIARALILKP------E 446 (534)
T ss_pred ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc------CCChhHhhcCCcccCcchhhHHHHHHHHhcCC------c
Confidence 6799999987753321 11122221111111 12345567899999999999999999999998 9
Q ss_pred hhhhccccCCCCceEEEeehhhhhccCccc
Q psy850 204 FLVLLCPCVSLQSILLMEEVNVYVSKPIDK 233 (280)
Q Consensus 204 ll~ldep~~~l~~illlDE~~~~~~~~~~~ 233 (280)
+++||||||++|..+....+.++.+.+-.|
T Consensus 447 ~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~ 476 (534)
T COG4172 447 LILLDEPTSALDRSVQAQVLDLLRDLQQKH 476 (534)
T ss_pred EEEecCCchHhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999988887777777766555
No 339
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=4.8e-26 Score=226.22 Aligned_cols=141 Identities=27% Similarity=0.358 Sum_probs=106.9
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCCC-CCcHHHHHHhCCCCC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWIT-NDTLRHNILFGEPFE 143 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l~-~~Tv~enI~~g~~~~ 143 (280)
.+.+|+++||+|.+|+.+||||+||||||||||+|+|.+.|++|+|...+ +++|++|++... ..||.+.+..+...-
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~ 94 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGEL 94 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHH
Confidence 35689999999999999999999999999999999999999999999987 799999998776 559999998764211
Q ss_pred hh---hHHHHHH------------------H-------hhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcC
Q psy850 144 PQ---RYYKTLY------------------N-------CALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195 (280)
Q Consensus 144 ~~---~~~~~~~------------------~-------~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~ 195 (280)
.+ ++..... . ......+..+ +.... ..+..+||||||.||+|||||+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~ 171 (530)
T COG0488 95 RELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE-DRPVSSLSGGWRRRVALARALLEE 171 (530)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc-cCchhhcCHHHHHHHHHHHHHhcC
Confidence 00 0000000 0 0001111111 11222 456678999999999999999999
Q ss_pred CchhhhhhhhhhccccCCCCc
Q psy850 196 SFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 196 p~i~~~~~ll~ldep~~~l~~ 216 (280)
| |+|+|||||.+||-
T Consensus 172 p------DlLLLDEPTNHLD~ 186 (530)
T COG0488 172 P------DLLLLDEPTNHLDL 186 (530)
T ss_pred C------CEEEEcCCCcccCH
Confidence 8 88999999999975
No 340
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=4.3e-26 Score=252.16 Aligned_cols=140 Identities=21% Similarity=0.210 Sum_probs=110.4
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCCC-CCcHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l~-~~Tv~e 134 (280)
+.+|+||||.|++||+++|+||||||||||+|+|+|+++|++|+|.++|. +|||||++.++ ..|++|
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHH
Confidence 56999999999999999999999999999999999999999999999872 79999997665 679999
Q ss_pred HHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 135 NILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 135 nI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
|+.+... .......+.+ ...++.+ +.....++++.+|||||||||+|||||+.+| ++|+||||+
T Consensus 2032 ~L~l~a~l~g~~~~~~~~~v-----~~lLe~l--gL~~~~dk~~~~LSGGqKqRLslA~ALi~~P------~VLLLDEPT 2098 (2272)
T TIGR01257 2032 HLYLYARLRGVPAEEIEKVA-----NWSIQSL--GLSLYADRLAGTYSGGNKRKLSTAIALIGCP------PLVLLDEPT 2098 (2272)
T ss_pred HHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEEECCC
Confidence 9976321 1111111111 1112222 3344556778899999999999999999998 889999999
Q ss_pred CCCCceEEE
Q psy850 212 VSLQSILLM 220 (280)
Q Consensus 212 ~~l~~illl 220 (280)
+++|+.-.-
T Consensus 2099 sGLDp~sr~ 2107 (2272)
T TIGR01257 2099 TGMDPQARR 2107 (2272)
T ss_pred CCCCHHHHH
Confidence 999875433
No 341
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.93 E-value=8e-26 Score=229.99 Aligned_cols=135 Identities=27% Similarity=0.351 Sum_probs=107.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCCCCC-CC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEAWIT-ND 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~~l~-~~ 130 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.++ ..
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 4799999999999999999999999999999999999999999999862 68999998776 56
Q ss_pred cHHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 131 TLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 131 Tv~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
|+.||+.+.... ......+. ....++.+ +.....+.++.+|||||+||++|||||+.+| ++|+|
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P------~lLll 168 (648)
T PRK10535 102 TAAQNVEVPAVYAGLERKQRLLR-----AQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGG------QVILA 168 (648)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhcCCcccCCHHHHHHHHHHHHHhcCC------CEEEE
Confidence 999999864211 11111111 11122222 3344566778899999999999999999998 88999
Q ss_pred ccccCCCCc
Q psy850 208 LCPCVSLQS 216 (280)
Q Consensus 208 dep~~~l~~ 216 (280)
|||+.++|.
T Consensus 169 DEP~~gLD~ 177 (648)
T PRK10535 169 DEPTGALDS 177 (648)
T ss_pred ECCCCCCCH
Confidence 999999975
No 342
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=3.2e-26 Score=208.70 Aligned_cols=133 Identities=23% Similarity=0.268 Sum_probs=99.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-----------ECCe---------------EEEEe
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS-----------REGT---------------CAYVS 122 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~-----------i~G~---------------ig~v~ 122 (280)
.+|+++++ +.+|++++|+|||||||||||++|+|+++|++|+|. ++|. ++|++
T Consensus 15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 58999995 999999999999999999999999999999999995 5441 46788
Q ss_pred cCCCCCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 123 QEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 123 Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
|....++.++.+++.+... ........ ...+..+ +.....++++.+||||||||++|||||+.+|
T Consensus 94 ~~~~~~~~~~~~~i~~~l~--~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~~~p------ 158 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLK--KKDERGKL-----DELVDQL--ELRHVLDRNIDQLSGGELQRVAIAAALARDA------ 158 (255)
T ss_pred chhccCchHHHHHHHHHhc--hhHHHHHH-----HHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHhCC------
Confidence 8765555566677654321 11111111 1112211 2233456677889999999999999999998
Q ss_pred hhhhhccccCCCCce
Q psy850 203 HFLVLLCPCVSLQSI 217 (280)
Q Consensus 203 ~ll~ldep~~~l~~i 217 (280)
+++++|||++++|.-
T Consensus 159 ~illlDEPts~LD~~ 173 (255)
T cd03236 159 DFYFFDEPSSYLDIK 173 (255)
T ss_pred CEEEEECCCCCCCHH
Confidence 889999999999774
No 343
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.93 E-value=8.4e-27 Score=209.47 Aligned_cols=158 Identities=23% Similarity=0.265 Sum_probs=112.7
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCC---CCC
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEA---WIT 128 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~---~l~ 128 (280)
+++.+|+|||++|++||..+|+|||||||||||++++|..+|++|.+.+.|+ ||||+-.- ...
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~ 121 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV 121 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc
Confidence 3567999999999999999999999999999999999999999999988763 68887542 223
Q ss_pred CCcHHHHHHhCCCC----ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
..+++|.|+-|... ..+.+...... .....+..+ +.....+++..+||-||||||.|||||+.+| .+
T Consensus 122 ~~~v~dvVlSg~~~siG~y~~~~~~~~~~-~a~~lle~~--g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P------~L 192 (257)
T COG1119 122 RETVRDVVLSGFFASIGIYQEDLTAEDLA-AAQWLLELL--GAKHLADRPFGSLSQGEQRRVLIARALVKDP------EL 192 (257)
T ss_pred ccccceeeeecccccccccccCCCHHHHH-HHHHHHHHc--chhhhccCchhhcCHhHHHHHHHHHHHhcCC------CE
Confidence 55788887644211 00011010000 001111111 3334456667789999999999999999998 88
Q ss_pred hhhccccCCCCceEEEeehhhhhccCcc
Q psy850 205 LVLLCPCVSLQSILLMEEVNVYVSKPID 232 (280)
Q Consensus 205 l~ldep~~~l~~illlDE~~~~~~~~~~ 232 (280)
||||||+.++|-.-...-++.+.+...+
T Consensus 193 LiLDEP~~GLDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 193 LILDEPAQGLDLIAREQLLNRLEELAAS 220 (257)
T ss_pred EEecCccccCChHHHHHHHHHHHHHhcC
Confidence 9999999999887665555555555444
No 344
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.93 E-value=2.5e-26 Score=216.00 Aligned_cols=119 Identities=27% Similarity=0.345 Sum_probs=92.1
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHHHhCCCCC---hhhHHHH
Q psy850 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNILFGEPFE---PQRYYKT 150 (280)
Q Consensus 86 IiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI~~g~~~~---~~~~~~~ 150 (280)
|+|||||||||||++|+|+++|++|+|.++|+ ++|++|++.++ +.|+++|+.++.... .......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999999999999999873 79999998766 579999999864211 1111111
Q ss_pred HHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 151 LYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 151 ~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+ ...+..+ +.....++++.+|||||||||+|||||+.+| ++|+||||++++|..
T Consensus 81 ~-----~~~l~~~--~l~~~~~~~~~~LSgGq~qRvalaraL~~~p------~lllLDEP~s~LD~~ 134 (325)
T TIGR01187 81 V-----LEALRLV--QLEEFADRKPHQLSGGQQQRVALARALVFKP------KILLLDEPLSALDKK 134 (325)
T ss_pred H-----HHHHHHc--CCcchhcCChhhCCHHHHHHHHHHHHHHhCC------CEEEEeCCCccCCHH
Confidence 1 1122222 2334456778899999999999999999998 889999999999764
No 345
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.9e-26 Score=198.96 Aligned_cols=133 Identities=29% Similarity=0.376 Sum_probs=101.0
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCC-CCCcHH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWI-TNDTLR 133 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l-~~~Tv~ 133 (280)
....+.++||++.+||++-|.||||||||||||+|+|+++|++|+|.++|. +-|+-..+-+ ...|++
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 356899999999999999999999999999999999999999999999863 2244333333 356999
Q ss_pred HHHHhCCCCC----hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 134 HNILFGEPFE----PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 134 enI~~g~~~~----~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
||+.|-..+. .....+.+... ++....+-+..+||-|||+||+|||-+++.+ .++||||
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~v-----------gL~g~~dlp~~~LSAGQqRRvAlArL~ls~~------pLWiLDE 156 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQV-----------GLAGLEDLPVGQLSAGQQRRVALARLWLSPA------PLWILDE 156 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHc-----------CcccccccchhhcchhHHHHHHHHHHHcCCC------CceeecC
Confidence 9998743211 11222222211 2223334456789999999999999999988 7889999
Q ss_pred ccCCCCc
Q psy850 210 PCVSLQS 216 (280)
Q Consensus 210 p~~~l~~ 216 (280)
|+.++|+
T Consensus 157 P~taLDk 163 (209)
T COG4133 157 PFTALDK 163 (209)
T ss_pred cccccCH
Confidence 9999887
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=1.7e-25 Score=227.08 Aligned_cols=141 Identities=23% Similarity=0.232 Sum_probs=100.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--EEEEecCCCCC-CCcHHHHHHhCCCC---
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--CAYVSQEAWIT-NDTLRHNILFGEPF--- 142 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--ig~v~Q~~~l~-~~Tv~enI~~g~~~--- 142 (280)
.+|+||||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ++|++|.+... ..++.+++..+...
T Consensus 17 ~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~ 96 (635)
T PRK11147 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAE 96 (635)
T ss_pred eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHH
Confidence 4799999999999999999999999999999999999999999999874 68999875332 34676665322100
Q ss_pred ----------------Chhh---HH---HHHH-------HhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHh
Q psy850 143 ----------------EPQR---YY---KTLY-------NCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALY 193 (280)
Q Consensus 143 ----------------~~~~---~~---~~~~-------~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~ 193 (280)
..+. +. ..+. .......+..+ +.. .++++.+|||||||||+|||||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~--~~~~~~~LSgGekqRv~LAraL~ 172 (635)
T PRK11147 97 YLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GLD--PDAALSSLSGGWLRKAALGRALV 172 (635)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CCC--CCCchhhcCHHHHHHHHHHHHHh
Confidence 0000 00 0000 00011112222 111 25667889999999999999999
Q ss_pred cCCchhhhhhhhhhccccCCCCceEE
Q psy850 194 SNSFEQQTFHFLVLLCPCVSLQSILL 219 (280)
Q Consensus 194 ~~p~i~~~~~ll~ldep~~~l~~ill 219 (280)
.+| ++|||||||+++|..-.
T Consensus 173 ~~P------~lLLLDEPt~~LD~~~~ 192 (635)
T PRK11147 173 SNP------DVLLLDEPTNHLDIETI 192 (635)
T ss_pred cCC------CEEEEcCCCCccCHHHH
Confidence 998 88999999999987443
No 347
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=2.5e-26 Score=196.16 Aligned_cols=135 Identities=27% Similarity=0.342 Sum_probs=102.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------------EEEEecCCCC-C
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------------CAYVSQEAWI-T 128 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------------ig~v~Q~~~l-~ 128 (280)
.+|.||+|+.+.|+.+.++||+|+|||||+|.+.=+.-|.+|+..+.|. +|+|||...+ +
T Consensus 16 q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwp 95 (242)
T COG4161 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWP 95 (242)
T ss_pred hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCc
Confidence 4799999999999999999999999999999999999999999988762 6999999755 4
Q ss_pred CCcHHHHHHhCCC----CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 129 NDTLRHNILFGEP----FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 129 ~~Tv~enI~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
+.||.||+.-.-. ..++...... . +.+..+ .+....++.|..|||||+|||+|||||+.+| +.
T Consensus 96 hltv~enlieap~kv~gl~~~qa~~~a--~---ellkrl--rl~~~adr~plhlsggqqqrvaiaralmmkp------qv 162 (242)
T COG4161 96 HLTVQENLIEAPCRVLGLSKDQALARA--E---KLLKRL--RLKPYADRYPLHLSGGQQQRVAIARALMMEP------QV 162 (242)
T ss_pred hhHHHHHHHhhhHHHhCCCHHHHHHHH--H---HHHHHh--ccccccccCceecccchhhhHHHHHHHhcCC------cE
Confidence 7899999874310 1111111111 1 111111 2334456778899999999999999999998 56
Q ss_pred hhhccccCCCCc
Q psy850 205 LVLLCPCVSLQS 216 (280)
Q Consensus 205 l~ldep~~~l~~ 216 (280)
|+.|||+.++|+
T Consensus 163 llfdeptaaldp 174 (242)
T COG4161 163 LLFDEPTAALDP 174 (242)
T ss_pred EeecCcccccCH
Confidence 777777777765
No 348
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=5.8e-26 Score=200.98 Aligned_cols=147 Identities=27% Similarity=0.350 Sum_probs=116.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCC---CCCCc
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAW---ITNDT 131 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~---l~~~T 131 (280)
+++|+++|++|++|+|+.|+|.||||||||+++|+|-+.|++|+|.++|. ++.|||+|. ...+|
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 56899999999999999999999999999999999999999999999984 578999984 45789
Q ss_pred HHHHHHhCCCCChhh-HHH---HHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 132 LRHNILFGEPFEPQR-YYK---TLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 132 v~enI~~g~~~~~~~-~~~---~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
+.||+.+.......+ +.. .-........+..++.+....+..+..-|||||||-|+|+.|.++.|
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~p----------- 167 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPP----------- 167 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCC-----------
Confidence 999998753210000 000 01111223345566677788888888889999999999999999998
Q ss_pred ccccCCCCceEEEeehhhhhccCccc
Q psy850 208 LCPCVSLQSILLMEEVNVYVSKPIDK 233 (280)
Q Consensus 208 dep~~~l~~illlDE~~~~~~~~~~~ 233 (280)
++|+|||+..-+|++.++
T Consensus 168 --------kiLLLDEHTAALDPkta~ 185 (263)
T COG1101 168 --------KILLLDEHTAALDPKTAE 185 (263)
T ss_pred --------cEEEecchhhcCCcchHH
Confidence 778888888888887766
No 349
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.93 E-value=2.9e-25 Score=241.59 Aligned_cols=139 Identities=23% Similarity=0.384 Sum_probs=105.9
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEECCe---------EEEEecCCC-CCCCcHH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR---STAGKLSREGT---------CAYVSQEAW-ITNDTLR 133 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~---p~~G~I~i~G~---------ig~v~Q~~~-l~~~Tv~ 133 (280)
.+.+|+|||+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+ ++||+|++. ++..||+
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 3568999999999999999999999999999999999997 78899999983 699999864 4578999
Q ss_pred HHHHhCCCC------ChhhHHHHHHHhhhhhhHhhC--CCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh-h
Q psy850 134 HNILFGEPF------EPQRYYKTLYNCALNTDIHIL--PGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH-F 204 (280)
Q Consensus 134 enI~~g~~~------~~~~~~~~~~~~~l~~~l~~l--~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~-l 204 (280)
||+.++... ......+.+.+ .++.+ .....+.+++.+..|||||||||+|||||+.+| + +
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~-----~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P------~~i 923 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEE-----VIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKP------KLL 923 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHH-----HHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCC------CeE
Confidence 999875321 11111111111 11111 111233444445589999999999999999998 6 7
Q ss_pred hhhccccCCCCc
Q psy850 205 LVLLCPCVSLQS 216 (280)
Q Consensus 205 l~ldep~~~l~~ 216 (280)
|+|||||+++|.
T Consensus 924 LlLDEPTsgLD~ 935 (1394)
T TIGR00956 924 LFLDEPTSGLDS 935 (1394)
T ss_pred EEEcCCCCCCCH
Confidence 999999999985
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=3.7e-25 Score=191.68 Aligned_cols=115 Identities=29% Similarity=0.360 Sum_probs=85.6
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------EEEEecCCCCCCCcHHHHHHhC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------CAYVSQEAWITNDTLRHNILFG 139 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------ig~v~Q~~~l~~~Tv~enI~~g 139 (280)
..+|+|+||+|++|++++|+|||||||||||++|++ ++|+|.+.+. ++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH----------------
Confidence 458999999999999999999999999999999963 6899988764 222222
Q ss_pred CCCChhhHHHHHHHhhhhhhHhhCCCCCch-hhccCCCCCCHHHHHHHHHHHHHhcC--CchhhhhhhhhhccccCCCCc
Q psy850 140 EPFEPQRYYKTLYNCALNTDIHILPGGDQT-EIGERGINLSGGQKQRVALARALYSN--SFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~-~i~~~~~~LSGGQrQRV~LARAL~~~--p~i~~~~~ll~ldep~~~l~~ 216 (280)
.+.+ ..+ +... .+++++.+||||||||++|||||+.+ | ++|++|||++++|.
T Consensus 68 --------~~~l---------~~~--~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p------~llLlDEPt~~LD~ 122 (176)
T cd03238 68 --------LQFL---------IDV--GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPG------TLFILDEPSTGLHQ 122 (176)
T ss_pred --------HHHH---------HHc--CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCC------CEEEEeCCcccCCH
Confidence 1111 111 1111 24567789999999999999999999 7 88999999999988
Q ss_pred eEEEeehhhhh
Q psy850 217 ILLMEEVNVYV 227 (280)
Q Consensus 217 illlDE~~~~~ 227 (280)
.-.-.-.+.+.
T Consensus 123 ~~~~~l~~~l~ 133 (176)
T cd03238 123 QDINQLLEVIK 133 (176)
T ss_pred HHHHHHHHHHH
Confidence 54433333333
No 351
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8.4e-25 Score=184.07 Aligned_cols=102 Identities=37% Similarity=0.509 Sum_probs=79.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYY 148 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~ 148 (280)
.+++++||+|++|++++|+||||||||||+++|+|+++|.+|+|.++|.-. .+. . ..+..
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~--~~~------~------------~~~~~ 72 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI--AKL------P------------LEELR 72 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc--ccC------C------------HHHHH
Confidence 479999999999999999999999999999999999999999999987411 000 0 00000
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
..+... .+|||||+||++||||++.+| +++++|||+.++|..
T Consensus 73 ---------~~i~~~------------~qlS~G~~~r~~l~~~l~~~~------~i~ilDEp~~~lD~~ 114 (157)
T cd00267 73 ---------RRIGYV------------PQLSGGQRQRVALARALLLNP------DLLLLDEPTSGLDPA 114 (157)
T ss_pred ---------hceEEE------------eeCCHHHHHHHHHHHHHhcCC------CEEEEeCCCcCCCHH
Confidence 000000 019999999999999999998 778999999988863
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=5.2e-25 Score=221.95 Aligned_cols=130 Identities=25% Similarity=0.303 Sum_probs=99.1
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-----------ECCe---------------EEEE
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS-----------REGT---------------CAYV 121 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~-----------i~G~---------------ig~v 121 (280)
..+|++++ .+++|++++|+||||||||||||+|+|+++|+.|+|. ++|+ +++.
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 45899999 8999999999999999999999999999999999997 6552 3555
Q ss_pred ecC----CCCCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCc
Q psy850 122 SQE----AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSF 197 (280)
Q Consensus 122 ~Q~----~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~ 197 (280)
+|. +.++..||++++.... ....+ ...+..+ +.....+++..+|||||||||+|||||+.+|
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~~------~~~~~-----~~~l~~l--~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p- 231 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKVD------ERGKL-----DEVVERL--GLENILDRDISELSGGELQRVAIAAALLRDA- 231 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhhh------HHHHH-----HHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCC-
Confidence 554 4455669999986410 01111 1111111 2223356677889999999999999999998
Q ss_pred hhhhhhhhhhccccCCCCce
Q psy850 198 EQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 198 i~~~~~ll~ldep~~~l~~i 217 (280)
++|+||||++++|..
T Consensus 232 -----~lllLDEPts~LD~~ 246 (590)
T PRK13409 232 -----DFYFFDEPTSYLDIR 246 (590)
T ss_pred -----CEEEEECCCCCCCHH
Confidence 889999999999764
No 353
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=7.9e-25 Score=208.09 Aligned_cols=154 Identities=22% Similarity=0.285 Sum_probs=113.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEECC-----------------eEEEEecCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-----TAGKLSREG-----------------TCAYVSQEA 125 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-----~~G~I~i~G-----------------~ig~v~Q~~ 125 (280)
..++++|||+|.+||.+||||+||||||-..+.|+|+++. -+|+|.++| +|+++||+|
T Consensus 23 ~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEP 102 (534)
T COG4172 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEP 102 (534)
T ss_pred eEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEeccc
Confidence 4589999999999999999999999999999999999864 368999987 389999998
Q ss_pred CC--CC-CcHHHHH----HhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCch
Q psy850 126 WI--TN-DTLRHNI----LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFE 198 (280)
Q Consensus 126 ~l--~~-~Tv~enI----~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i 198 (280)
.- -+ .|+...| .+.+............++..... .+ .....++.+|++|||||||||+||.||+.+|
T Consensus 103 MtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~Vg---I~-~p~~rl~~yPHeLSGGqRQRVMIAMALan~P-- 176 (534)
T COG4172 103 MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVG---IP-EPEKRLDAYPHELSGGQRQRVMIAMALANEP-- 176 (534)
T ss_pred ccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC---CC-chhhhhhhCCcccCcchhhHHHHHHHHcCCC--
Confidence 43 22 3665544 33333222222222222211111 11 1234567899999999999999999999998
Q ss_pred hhhhhhhhhccccCCCCceEEEeehhhhhccCc
Q psy850 199 QQTFHFLVLLCPCVSLQSILLMEEVNVYVSKPI 231 (280)
Q Consensus 199 ~~~~~ll~ldep~~~l~~illlDE~~~~~~~~~ 231 (280)
|+||+||||.++|-.+.....+++.+.+-
T Consensus 177 ----~lLIADEPTTALDVtvQaQIL~Ll~~Lq~ 205 (534)
T COG4172 177 ----DLLIADEPTTALDVTVQAQILDLLKELQA 205 (534)
T ss_pred ----CeEeecCCcchhhhhhHHHHHHHHHHHHH
Confidence 89999999999998877777776665543
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.91 E-value=2e-24 Score=235.39 Aligned_cols=138 Identities=17% Similarity=0.265 Sum_probs=102.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEECCe----------EEEEecCCCC-CCCcHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS--TAGKLSREGT----------CAYVSQEAWI-TNDTLRH 134 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p--~~G~I~i~G~----------ig~v~Q~~~l-~~~Tv~e 134 (280)
+.+|+|||+.+++|++++|+|||||||||||++|+|..++ .+|+|.++|. +|||+|++.+ +..||+|
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E 972 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRE 972 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHH
Confidence 3689999999999999999999999999999999999763 6899999872 6999999754 4679999
Q ss_pred HHHhCCCC------ChhhHHHHHHHhhhhhhHhhC--CCCCchhhccC-CCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 135 NILFGEPF------EPQRYYKTLYNCALNTDIHIL--PGGDQTEIGER-GINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 135 nI~~g~~~------~~~~~~~~~~~~~l~~~l~~l--~~g~~~~i~~~-~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
|+.+.... ..+...+.+.+ .++.+ .....+.++.. ...|||||||||+|||||+.+| ++|
T Consensus 973 ~L~~~a~lr~~~~~~~~~~~~~v~~-----vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P------~lL 1041 (1470)
T PLN03140 973 SLIYSAFLRLPKEVSKEEKMMFVDE-----VMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANP------SII 1041 (1470)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHH-----HHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCC------CEE
Confidence 99875311 11111111111 11111 00111222222 2579999999999999999998 889
Q ss_pred hhccccCCCCc
Q psy850 206 VLLCPCVSLQS 216 (280)
Q Consensus 206 ~ldep~~~l~~ 216 (280)
+|||||+++|.
T Consensus 1042 ~LDEPTsgLD~ 1052 (1470)
T PLN03140 1042 FMDEPTSGLDA 1052 (1470)
T ss_pred EEeCCCCCCCH
Confidence 99999999985
No 355
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.91 E-value=1.7e-24 Score=235.57 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=111.0
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC----CCCCceEEECCe------------EEEEecCCCC-CC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL----RSTAGKLSREGT------------CAYVSQEAWI-TN 129 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~----~p~~G~I~i~G~------------ig~v~Q~~~l-~~ 129 (280)
.+.+|+|||+.+++||+++|+||||||||||||+|+|+. .|.+|+|.++|. ++|++|+..+ +.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 356899999999999999999999999999999999986 578999999873 7999998654 46
Q ss_pred CcHHHHHHhCCCC----------ChhhHHHHHHHhhhhhhHhhC--CCCCchhhc-cCCCCCCHHHHHHHHHHHHHhcCC
Q psy850 130 DTLRHNILFGEPF----------EPQRYYKTLYNCALNTDIHIL--PGGDQTEIG-ERGINLSGGQKQRVALARALYSNS 196 (280)
Q Consensus 130 ~Tv~enI~~g~~~----------~~~~~~~~~~~~~l~~~l~~l--~~g~~~~i~-~~~~~LSGGQrQRV~LARAL~~~p 196 (280)
.||+||+.++... ..+...+... ...++.+ .....+.++ +....|||||||||+|||||+.+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p 228 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIA----DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH----HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence 7999999885321 1111111110 1111111 111222232 345679999999999999999998
Q ss_pred chhhhhhhhhhccccCCCCceEEEeehhhhhc
Q psy850 197 FEQQTFHFLVLLCPCVSLQSILLMEEVNVYVS 228 (280)
Q Consensus 197 ~i~~~~~ll~ldep~~~l~~illlDE~~~~~~ 228 (280)
++|+|||||+++|..--.+-.+.+..
T Consensus 229 ------~vlllDEPTsgLD~~~~~~i~~~L~~ 254 (1394)
T TIGR00956 229 ------KIQCWDNATRGLDSATALEFIRALKT 254 (1394)
T ss_pred ------CEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 88999999999988655554444443
No 356
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=4.9e-25 Score=192.74 Aligned_cols=142 Identities=23% Similarity=0.269 Sum_probs=109.1
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------------EEEEecCCCCC-C
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------------CAYVSQEAWIT-N 129 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------------ig~v~Q~~~l~-~ 129 (280)
++..+|+++||++.+||+-+|||||||||||+|.+|.|..+|+.|+|.++|. ||.-||.|.+| +
T Consensus 16 ~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ 95 (249)
T COG4674 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN 95 (249)
T ss_pred cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh
Confidence 4677999999999999999999999999999999999999999999999982 68899999776 7
Q ss_pred CcHHHHHHhCCCCChhhHHHHH------HHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 130 DTLRHNILFGEPFEPQRYYKTL------YNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 130 ~Tv~enI~~g~~~~~~~~~~~~------~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
.||+||+.+....++..+.... .+......+... ++....+.....||-||||++.|++-|+++| +
T Consensus 96 ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~i--gL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P------~ 167 (249)
T COG4674 96 LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI--GLGDERDRLAALLSHGQKQWLEIGMLLAQDP------K 167 (249)
T ss_pred ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHc--ccchhhhhhhhhhccchhhhhhhheeeccCC------c
Confidence 7999999876443322111100 001111112211 3444445556779999999999999999998 8
Q ss_pred hhhhccccCCCC
Q psy850 204 FLVLLCPCVSLQ 215 (280)
Q Consensus 204 ll~ldep~~~l~ 215 (280)
+|++|||..+..
T Consensus 168 lLLlDEPvAGMT 179 (249)
T COG4674 168 LLLLDEPVAGMT 179 (249)
T ss_pred EEEecCccCCCc
Confidence 899999988763
No 357
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=3.6e-24 Score=186.01 Aligned_cols=153 Identities=24% Similarity=0.299 Sum_probs=111.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCC-CC--CcH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWI-TN--DTL 132 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l-~~--~Tv 132 (280)
.+++.|||++++|+.+||||.||||||||.|+|+|.++|++|+|.++|+ |-++||+|.- ++ ..+
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 4789999999999999999999999999999999999999999999983 6789999742 22 233
Q ss_pred HHHHHhCCC----CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 133 RHNILFGEP----FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 133 ~enI~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
..-+..... .+.+...+.+.+.. ..+..+| .+..-++..||-||||||+|||||+.+| +++|.|
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL--~~VGL~P----dhan~~~~~la~~QKQRVaLARALIL~P------~iIIaD 174 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETL--RMVGLLP----DHANYYPHMLAPGQKQRVALARALILRP------KIIIAD 174 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHH--HHhccCc----cccccchhhcCchhHHHHHHHHHHhcCC------cEEEeh
Confidence 333322211 11222222221111 1122222 2334567789999999999999999998 789999
Q ss_pred cccCCCCceEEEeehhhhhccCccc
Q psy850 209 CPCVSLQSILLMEEVNVYVSKPIDK 233 (280)
Q Consensus 209 ep~~~l~~illlDE~~~~~~~~~~~ 233 (280)
|...++|..+.-...|+.++.+-.+
T Consensus 175 eAl~~LD~smrsQl~NL~LeLQek~ 199 (267)
T COG4167 175 EALASLDMSMRSQLINLMLELQEKQ 199 (267)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHh
Confidence 9999999887777777777655433
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=1e-23 Score=229.80 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=114.1
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEECCe----------EEEEecCCCC-CCCcH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST---AGKLSREGT----------CAYVSQEAWI-TNDTL 132 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~---~G~I~i~G~----------ig~v~Q~~~l-~~~Tv 132 (280)
.+.+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|. ++||+|+..+ +..||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 356899999999999999999999999999999999999998 999999873 7999998654 46799
Q ss_pred HHHHHhCCCCCh---------h--hHHH--------HH----HHh---------hhhhhHhhC--CCCCchhh-ccCCCC
Q psy850 133 RHNILFGEPFEP---------Q--RYYK--------TL----YNC---------ALNTDIHIL--PGGDQTEI-GERGIN 177 (280)
Q Consensus 133 ~enI~~g~~~~~---------~--~~~~--------~~----~~~---------~l~~~l~~l--~~g~~~~i-~~~~~~ 177 (280)
+||+.|+..... + +..+ .+ ..+ .....+..+ .....+.+ ++....
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999987532110 0 0000 00 000 001112222 11112333 345678
Q ss_pred CCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEEEeehhhhhcc
Q psy850 178 LSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEEVNVYVSK 229 (280)
Q Consensus 178 LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~illlDE~~~~~~~ 229 (280)
|||||||||+|||+|+.+| ++|++|||+++||..--.+-.+.+...
T Consensus 337 lSGGerkRVsia~aL~~~p------~vlllDEPTsGLDs~t~~~i~~~Lr~l 382 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPT------KTLFMDEISTGLDSSTTYQIVKCLQQI 382 (1470)
T ss_pred CCcccceeeeehhhhcCCC------cEEEEeCCCcCccHHHHHHHHHHHHHH
Confidence 9999999999999999998 889999999999987666666655544
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=8.6e-23 Score=203.03 Aligned_cols=133 Identities=26% Similarity=0.316 Sum_probs=103.2
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCC-C-CCCCcHHHHHHhCCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEA-W-ITNDTLRHNILFGEPFE 143 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~-~-l~~~Tv~enI~~g~~~~ 143 (280)
+.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.- ++||..|+. . ..+.|+.+++.-..+..
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~ 414 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDG 414 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccc
Confidence 4689999999999999999999999999999999999999999998875 489999985 2 34558999987543211
Q ss_pred -hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 144 -PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 144 -~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.......+..... ......++...||||||-|+.||+.++.+| .+|||||||..||.
T Consensus 415 ~e~~~r~~L~~f~F----------~~~~~~~~v~~LSGGEk~Rl~La~ll~~~p------NvLiLDEPTNhLDi 472 (530)
T COG0488 415 DEQEVRAYLGRFGF----------TGEDQEKPVGVLSGGEKARLLLAKLLLQPP------NLLLLDEPTNHLDI 472 (530)
T ss_pred cHHHHHHHHHHcCC----------ChHHHhCchhhcCHhHHHHHHHHHHhccCC------CEEEEcCCCccCCH
Confidence 1122222211111 112234567789999999999999999988 78999999999975
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.4e-23 Score=181.26 Aligned_cols=146 Identities=24% Similarity=0.261 Sum_probs=102.5
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------------EEEEecC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------------CAYVSQE 124 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------------ig~v~Q~ 124 (280)
.....++|||++.|||+.+|+|++||||||||+||++-+.|+.|+|.+.-+ -|+|.|+
T Consensus 18 ~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQn 97 (258)
T COG4107 18 PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQN 97 (258)
T ss_pred CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecC
Confidence 455688999999999999999999999999999999999999999987521 3899999
Q ss_pred CCC---CCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhh
Q psy850 125 AWI---TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQT 201 (280)
Q Consensus 125 ~~l---~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~ 201 (280)
|.- ...+.-.||---......+.+..++..+ ...++..+ -+.+.+++.|.++|||||||+.|||-|+..|
T Consensus 98 P~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a-~~WL~~VE-I~~~RiDD~PrtFSGGMqQRLQiARnLVt~P----- 170 (258)
T COG4107 98 PRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEA-QDWLEEVE-IDLDRIDDLPRTFSGGMQQRLQIARNLVTRP----- 170 (258)
T ss_pred ccccceeeeccCCccchhHHhhhhhhhhhHHHHH-HHHHHhcc-cCcccccCcccccchHHHHHHHHHHHhccCC-----
Confidence 842 1223333331000000011111111111 11122111 2345667889999999999999999999998
Q ss_pred hhhhhhccccCCCCceEEE
Q psy850 202 FHFLVLLCPCVSLQSILLM 220 (280)
Q Consensus 202 ~~ll~ldep~~~l~~illl 220 (280)
++.++||||+++|-.+..
T Consensus 171 -rLvfMDEPTGGLDVSVQA 188 (258)
T COG4107 171 -RLVFMDEPTGGLDVSVQA 188 (258)
T ss_pred -ceEEecCCCCCcchhhHH
Confidence 899999999999876643
No 361
>KOG0061|consensus
Probab=99.89 E-value=5.7e-23 Score=207.93 Aligned_cols=150 Identities=26% Similarity=0.383 Sum_probs=109.7
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC---CCceEEECCe----------EEEEecCCCC-CCCcHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS---TAGKLSREGT----------CAYVSQEAWI-TNDTLR 133 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p---~~G~I~i~G~----------ig~v~Q~~~l-~~~Tv~ 133 (280)
+.+|++||.++++||++||+||+||||||||++|+|.... .+|+|.+||+ .|||.|+..+ ...||+
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHH
Confidence 5689999999999999999999999999999999999974 7899999993 6999999764 578999
Q ss_pred HHHHhCCCC------ChhhHHHHHHHhhhhhhHhhCCCCCchhhccC-CCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 134 HNILFGEPF------EPQRYYKTLYNCALNTDIHILPGGDQTEIGER-GINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 134 enI~~g~~~------~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~-~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
|++.+.... ..+....+++....+..+.. -.++.++.. ...+|||||+||+||.-|+.+| .+|+
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~---~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P------~iLf 193 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK---CADTLIGNPGIRGLSGGERKRVSIALELLTDP------SILF 193 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh---hccceecCCCCCccccchhhHHHHHHHHHcCC------CEEE
Confidence 999875322 12222222222111111111 112222221 1469999999999999999998 7899
Q ss_pred hccccCCCCceEEEeehhhh
Q psy850 207 LLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 207 ldep~~~l~~illlDE~~~~ 226 (280)
+||||++||...=.+-+.++
T Consensus 194 lDEPTSGLDS~sA~~vv~~L 213 (613)
T KOG0061|consen 194 LDEPTSGLDSFSALQVVQLL 213 (613)
T ss_pred ecCCCCCcchhhHHHHHHHH
Confidence 99999999875544444443
No 362
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=9.4e-24 Score=181.46 Aligned_cols=138 Identities=25% Similarity=0.282 Sum_probs=94.1
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC---------------------eEEEEecCC-
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---------------------TCAYVSQEA- 125 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G---------------------~ig~v~Q~~- 125 (280)
-++++++||+++.||++++-||+|+|||||||+|.+-|.|++|+|.+.- .+|||+|--
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 4689999999999999999999999999999999999999999998752 279999963
Q ss_pred CCCCCcHHHHHHhC---CCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 126 WITNDTLRHNILFG---EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 126 ~l~~~Tv~enI~~g---~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
.++..+..+.++-. +....+...... ..+...++ +|. ..-.-.|.++||||||||.|||+++.+-
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a--~~Ll~rLn-lpe---rLW~LaPaTFSGGEqQRVNIaRgfivd~------ 171 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKA--ADLLTRLN-LPE---RLWSLAPATFSGGEQQRVNIARGFIVDY------ 171 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHH--HHHHHHcC-CCH---HHhcCCCcccCCchheehhhhhhhhccC------
Confidence 33344444444321 111111111111 11111111 111 1112347889999999999999999986
Q ss_pred hhhhhccccCCCCce
Q psy850 203 HFLVLLCPCVSLQSI 217 (280)
Q Consensus 203 ~ll~ldep~~~l~~i 217 (280)
.+|+|||||.++|.-
T Consensus 172 pILLLDEPTasLDa~ 186 (235)
T COG4778 172 PILLLDEPTASLDAT 186 (235)
T ss_pred ceEEecCCccccccc
Confidence 456777777777653
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.88 E-value=1.9e-22 Score=207.23 Aligned_cols=140 Identities=22% Similarity=0.231 Sum_probs=89.1
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCC-----
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEP----- 141 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~----- 141 (280)
++.+|+|+||+|.+|+++||||||||||||||++|+|... .| +.-.|.++|+.|+......|+.+.+.....
T Consensus 189 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~ 265 (718)
T PLN03073 189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-IPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQL 265 (718)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-CCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHH
Confidence 3458999999999999999999999999999999999741 12 122345677888753334455443221100
Q ss_pred ------------------------------CChhhHHHHHHH----hh----------hhhhHhhCCCCCc-hhhccCCC
Q psy850 142 ------------------------------FEPQRYYKTLYN----CA----------LNTDIHILPGGDQ-TEIGERGI 176 (280)
Q Consensus 142 ------------------------------~~~~~~~~~~~~----~~----------l~~~l~~l~~g~~-~~i~~~~~ 176 (280)
.........+.. .. ....+..+ +.. ....+++.
T Consensus 266 ~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l--gl~~~~~~~~~~ 343 (718)
T PLN03073 266 LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL--SFTPEMQVKATK 343 (718)
T ss_pred HHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--CCChHHHhCchh
Confidence 000000000000 00 00001111 111 22455678
Q ss_pred CCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 177 NLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 177 ~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+|||||||||+|||||+.+| ++|||||||.++|..
T Consensus 344 ~LSgG~k~rv~LA~aL~~~p------~lLlLDEPt~~LD~~ 378 (718)
T PLN03073 344 TFSGGWRMRIALARALFIEP------DLLLLDEPTNHLDLH 378 (718)
T ss_pred hCCHHHHHHHHHHHHHhcCC------CEEEEECCCCCCCHH
Confidence 89999999999999999998 889999999999753
No 364
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.88 E-value=1.7e-22 Score=201.75 Aligned_cols=169 Identities=22% Similarity=0.344 Sum_probs=133.3
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCCCCCcHHHHHHhCCC---
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWITNDTLRHNILFGEP--- 141 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l~~~Tv~enI~~g~~--- 141 (280)
+...+++.+|.|++|+-+-|.||||||||||+|+|+|+.+--+|+|.+-. .+-|+||.|.++.+|.+|.|++...
T Consensus 405 ~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~ 484 (604)
T COG4178 405 GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPD 484 (604)
T ss_pred CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCC
Confidence 45789999999999999999999999999999999999999999998763 3799999999999999999999753
Q ss_pred CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEEEe
Q psy850 142 FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLME 221 (280)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~illlD 221 (280)
+..+...+.+.+|.+....+.+...+ +=-..||+||||||++||.|+++| ++++|||.|+++|+=.-.-
T Consensus 485 ~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP------~~v~LDEATsALDe~~e~~ 553 (604)
T COG4178 485 FSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKP------KWVFLDEATSALDEETEDR 553 (604)
T ss_pred CChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCC------CEEEEecchhccChHHHHH
Confidence 34566777888888777665543211 112359999999999999999998 8899999999998743332
Q ss_pred ehhhhhccCcccceeEEecCCeeeee
Q psy850 222 EVNVYVSKPIDKSSAVSIAGGSFLWD 247 (280)
Q Consensus 222 E~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (280)
-.+++-+ ..-...++|++=-+-+|.
T Consensus 554 l~q~l~~-~lp~~tvISV~Hr~tl~~ 578 (604)
T COG4178 554 LYQLLKE-ELPDATVISVGHRPTLWN 578 (604)
T ss_pred HHHHHHh-hCCCCEEEEeccchhhHH
Confidence 2333333 223347888887766653
No 365
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=1.8e-22 Score=181.51 Aligned_cols=123 Identities=27% Similarity=0.246 Sum_probs=92.5
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCC--CCCCCcHHHHHHhCCC---
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEA--WITNDTLRHNILFGEP--- 141 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~--~l~~~Tv~enI~~g~~--- 141 (280)
...+|+||||++.+||.+||||+||||||||||+|+|.++|++|+|.++|+++++..-. +-+..|.+|||.+-..
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 45699999999999999999999999999999999999999999999999998766543 2345699999975211
Q ss_pred CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCC
Q psy850 142 FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196 (280)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p 196 (280)
.......+.......... +...++.+..++|-||+-|+++|-|...+|
T Consensus 119 ~~~~ei~~~~~eIieFaE-------LG~fi~~PvktYSSGM~aRLaFsia~~~~p 166 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAE-------LGDFIDQPVKTYSSGMYARLAFSVATHVEP 166 (249)
T ss_pred ccHHHHHHHHHHHHHHHH-------HHHHhhCchhhccHHHHHHHHHhhhhhcCC
Confidence 112222222221111111 123345667789999999999999999999
No 366
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2.4e-22 Score=183.15 Aligned_cols=142 Identities=28% Similarity=0.267 Sum_probs=97.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEe-cCCCCC-CCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVS-QEAWIT-NDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~-Q~~~l~-~~Tv~e 134 (280)
.+++||||+|++|++++++|||||||||+||+|.|++.|++|.|+++|. +++|+ |...+. ...+.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 4789999999999999999999999999999999999999999999984 33332 222111 111222
Q ss_pred HHHhCC---CCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 135 NILFGE---PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 135 nI~~g~---~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
.+.... ......+.+.+.. ..+.+ +....+..+.+.||-|||.|+.||.||+++| ++|+|||||
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~-----l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p------~VLfLDEpT 184 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDF-----LTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPP------KVLFLDEPT 184 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHH-----HHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCC------cEEEecCCc
Confidence 221110 1112223332221 11112 2334566677889999999999999999998 789999999
Q ss_pred CCCCceEEEeeh
Q psy850 212 VSLQSILLMEEV 223 (280)
Q Consensus 212 ~~l~~illlDE~ 223 (280)
-++|-+..-+..
T Consensus 185 vgLDV~aq~~ir 196 (325)
T COG4586 185 VGLDVNAQANIR 196 (325)
T ss_pred cCcchhHHHHHH
Confidence 998765443333
No 367
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.5e-22 Score=177.02 Aligned_cols=137 Identities=23% Similarity=0.245 Sum_probs=100.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEECCe--------------EEEEecCCCCCC-C
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL--RSTAGKLSREGT--------------CAYVSQEAWITN-D 130 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~--~p~~G~I~i~G~--------------ig~v~Q~~~l~~-~ 130 (280)
+.+|++|||+|++||+.+|+||||||||||.++|+|.- ++++|+|.++|+ +...||.|.-++ .
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 47899999999999999999999999999999999985 789999999994 567899986554 4
Q ss_pred cHHHHHHhCCCC----Ch--hhHHHHHHHhhhhhhHhhCCCCCchhhccCC-CCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 131 TLRHNILFGEPF----EP--QRYYKTLYNCALNTDIHILPGGDQTEIGERG-INLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 131 Tv~enI~~g~~~----~~--~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~-~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
++.+.+..+... .. ..+.+.++++. ..+. .+...+.+.. ..+|||||.|..|+++++.+| +
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~-----~~l~-~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP------k 164 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKA-----ELLG-LDEEFLERYVNEGFSGGEKKRNEILQLLLLEP------K 164 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHH-----HHcC-CCHHHhhcccCCCcCcchHHHHHHHHHHhcCC------C
Confidence 888877643211 00 11222222211 1110 1112222322 249999999999999999998 8
Q ss_pred hhhhccccCCCCc
Q psy850 204 FLVLLCPCVSLQS 216 (280)
Q Consensus 204 ll~ldep~~~l~~ 216 (280)
+.|||||-|++|-
T Consensus 165 l~ILDE~DSGLDI 177 (251)
T COG0396 165 LAILDEPDSGLDI 177 (251)
T ss_pred EEEecCCCcCccH
Confidence 9999999999964
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.84 E-value=4.1e-21 Score=171.80 Aligned_cols=146 Identities=23% Similarity=0.187 Sum_probs=83.9
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHH-HHHHc--------------------CCCCCCceEEECC-eEEEEecCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALL-YAILS--------------------QLRSTAGKLSREG-TCAYVSQEA 125 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLL-k~I~G--------------------l~~p~~G~I~i~G-~ig~v~Q~~ 125 (280)
..+|++|||+|++||+++|+||||||||||+ ..|.. ...|..++ +.+ ...+..|++
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 85 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS--IEGLSPAIAIDQK 85 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc--ccCCCceEEecCC
Confidence 3579999999999999999999999999996 33321 11121111 111 123444443
Q ss_pred C-CC--CCcHHH---HHHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCch-hhccCCCCCCHHHHHHHHHHHHHhcCCc
Q psy850 126 W-IT--NDTLRH---NILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQT-EIGERGINLSGGQKQRVALARALYSNSF 197 (280)
Q Consensus 126 ~-l~--~~Tv~e---nI~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~-~i~~~~~~LSGGQrQRV~LARAL~~~p~ 197 (280)
. .. ..++.. ...+-.. +........ ...+..+ +... ..++++.+|||||||||+|||||+.+|+
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 157 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLT 157 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence 2 11 123321 1111000 000000000 1112222 1222 3567888999999999999999999871
Q ss_pred hhhhhhhhhhccccCCCCceEEEeehhhhh
Q psy850 198 EQQTFHFLVLLCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 198 i~~~~~ll~ldep~~~l~~illlDE~~~~~ 227 (280)
|++||||||++++|....-.-.+++.
T Consensus 158 ----~~llllDEPt~gLD~~~~~~l~~~l~ 183 (226)
T cd03270 158 ----GVLYVLDEPSIGLHPRDNDRLIETLK 183 (226)
T ss_pred ----CCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 25899999999998754443334443
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.84 E-value=8.8e-22 Score=172.99 Aligned_cols=130 Identities=21% Similarity=0.124 Sum_probs=88.9
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc---------eEEECC----------eEEEEecCCCCCCCcH
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG---------KLSREG----------TCAYVSQEAWITNDTL 132 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G---------~I~i~G----------~ig~v~Q~~~l~~~Tv 132 (280)
++++|++.+| +++|+||||||||||+++|+|++.+..| ++.+.| +++|+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999999866533 454433 479999998665
Q ss_pred HHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 133 RHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 133 ~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
++.. ..++..+.+. . .....+++.+||||||||++|||||+... +.+|+++++|||++
T Consensus 89 -----~~~~-~~~~~~~~l~---------~-----~~~~~~~~~~LS~G~kqrl~la~~l~~~~--~~~~~illlDEP~~ 146 (197)
T cd03278 89 -----YSII-SQGDVSEIIE---------A-----PGKKVQRLSLLSGGEKALTALALLFAIFR--VRPSPFCVLDEVDA 146 (197)
T ss_pred -----eeEE-ehhhHHHHHh---------C-----CCccccchhhcCHHHHHHHHHHHHHHHhc--cCCCCEEEEeCCcc
Confidence 1110 0111111111 1 11234567789999999999999997410 01148899999999
Q ss_pred CCCceEEEeehhhhhc
Q psy850 213 SLQSILLMEEVNVYVS 228 (280)
Q Consensus 213 ~l~~illlDE~~~~~~ 228 (280)
++|..-...-.+++..
T Consensus 147 ~LD~~~~~~l~~~l~~ 162 (197)
T cd03278 147 ALDDANVERFARLLKE 162 (197)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9987654444444443
No 370
>KOG0060|consensus
Probab=99.84 E-value=1.2e-20 Score=185.67 Aligned_cols=144 Identities=26% Similarity=0.352 Sum_probs=112.5
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC--C---eEEEEecCCCCCCCcHHHHHHhCCC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE--G---TCAYVSQEAWITNDTLRHNILFGEP 141 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~--G---~ig~v~Q~~~l~~~Tv~enI~~g~~ 141 (280)
+..+++|+||+|+.|+-+-|+||||||||+|+|++.|+.+..+|++... | .+-|+||.|.+..+|.|+.|.+...
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 3457888999999999999999999999999999999999999999754 3 3789999999999999999998731
Q ss_pred --------CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 142 --------FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 142 --------~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
...++..+.++...+...+......+....-+=...||+||+||+++||-+|++| ++-+|||-|++
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kP------k~AiLDE~TSA 600 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKP------KFAILDECTSA 600 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCC------ceEEeechhhh
Confidence 1234555566655555544444322222222334569999999999999999998 77888888887
Q ss_pred CCc
Q psy850 214 LQS 216 (280)
Q Consensus 214 l~~ 216 (280)
.+.
T Consensus 601 v~~ 603 (659)
T KOG0060|consen 601 VTE 603 (659)
T ss_pred ccH
Confidence 764
No 371
>KOG0059|consensus
Probab=99.81 E-value=2.2e-20 Score=196.02 Aligned_cols=120 Identities=22% Similarity=0.316 Sum_probs=93.4
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCC-CCcHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWIT-NDTLRH 134 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~Tv~e 134 (280)
++++++|.|++||+.|+.|||||||||++++|.|..+|++|++.+.|. +|||||...+. ..|.+|
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 899999999999999999999999999999999999999999999762 79999986554 679999
Q ss_pred HHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCC
Q psy850 135 NILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196 (280)
Q Consensus 135 nI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p 196 (280)
.+.+... .......+.+. ..++.+ +.......+...+|||+|+|+++|.||+.+|
T Consensus 660 hL~~~arlrG~~~~di~~~v~-----~ll~~~--~L~~~~~~~~~~ySgG~kRkLs~aialig~p 717 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIE-----KLLRLV--GLGPYANKQVRTYSGGNKRRLSFAIALIGDP 717 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHH-----HHHHHc--CChhhhccchhhCCCcchhhHHHHHHHhcCC
Confidence 9976421 11122222221 112222 3334455667789999999999999999998
No 372
>KOG0927|consensus
Probab=99.80 E-value=6.1e-20 Score=179.59 Aligned_cols=132 Identities=27% Similarity=0.274 Sum_probs=99.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCC---CCCCCcHHHHHHhCCC--
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEA---WITNDTLRHNILFGEP-- 141 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~---~l~~~Tv~enI~~g~~-- 141 (280)
.++++++|-|..++.+++|||||||||||||++.|.+.|..|.|...- .+++..|+. ...+.+..++++--..
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~ 483 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDE 483 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhcccc
Confidence 478899999999999999999999999999999999999999997653 466667763 2235577777753211
Q ss_pred CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 142 FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
...+.+...+..+.+..+.+ ..+..+||+|||.||.+||.++..| .+|+|||||+++|-
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q----------~~p~~~LS~Gqr~rVlFa~l~~kqP------~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQ----------VVPMSQLSDGQRRRVLFARLAVKQP------HLLLLDEPTNHLDI 542 (614)
T ss_pred chHHHHHHHHHHhCCCcccc----------ccchhhcccccchhHHHHHHHhcCC------cEEEecCCCcCCCc
Confidence 22233444555554443322 2345679999999999999999998 77888888888864
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.79 E-value=1e-19 Score=162.95 Aligned_cols=52 Identities=25% Similarity=0.163 Sum_probs=39.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHHhc---CCchhhhhhhhhhccccCCCCceEEEeehhhhh
Q psy850 171 IGERGINLSGGQKQRVALARALYS---NSFEQQTFHFLVLLCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 171 i~~~~~~LSGGQrQRV~LARAL~~---~p~i~~~~~ll~ldep~~~l~~illlDE~~~~~ 227 (280)
.++++.+||||||||++|||||+. ++ |+++++|||+.++|+...-.-.+.+.
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~-----~~illlDEp~~~ld~~~~~~~~~~l~ 206 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDP-----APFYLFDEIDAALDAQYRTAVANMIK 206 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCC-----CCEEEEECCccCCCHHHHHHHHHHHH
Confidence 346778899999999999999974 32 37889999999998864443333333
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.77 E-value=1.2e-19 Score=160.59 Aligned_cols=132 Identities=22% Similarity=0.229 Sum_probs=83.3
Q ss_pred eeeeEEee-CCcEEEEECCCCCcHHHHHHHHHcC-CCCCCceEEEC------------CeEEEEecCCCCCCCcHHHHHH
Q psy850 72 VDINFFAP-KGKLVGICGAVGSGKSALLYAILSQ-LRSTAGKLSRE------------GTCAYVSQEAWITNDTLRHNIL 137 (280)
Q Consensus 72 ~~Isl~i~-~GeivaIiGpnGsGKSTLLk~I~Gl-~~p~~G~I~i~------------G~ig~v~Q~~~l~~~Tv~enI~ 137 (280)
.+|+|... +|++++|+||||||||||+++|.+. +-+..+....+ ..+++++|.+.... ++....
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~-~~~r~~- 95 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY-RVERSR- 95 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE-EEEEec-
Confidence 56777654 5899999999999999999999953 33333333321 13788888763211 111111
Q ss_pred hCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchh----hhhhhhhhccccCC
Q psy850 138 FGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQ----QTFHFLVLLCPCVS 213 (280)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~----~~~~ll~ldep~~~ 213 (280)
+ .+.+.+.+... +. .......++.++.+||||||||++|||||+.+|.+. ..|+++++|||+++
T Consensus 96 -g--l~~~~~~~~~~---l~------~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~ 163 (213)
T cd03279 96 -G--LDYDQFTRIVL---LP------QGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGT 163 (213)
T ss_pred -C--CCHHHHHHhhh---hh------hcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCccc
Confidence 1 11111111110 00 001234456678889999999999999999876443 24689999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|.-
T Consensus 164 lD~~ 167 (213)
T cd03279 164 LDPE 167 (213)
T ss_pred CCHH
Confidence 9874
No 375
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.77 E-value=3e-19 Score=157.59 Aligned_cols=115 Identities=23% Similarity=0.218 Sum_probs=84.7
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHH----HcCCCCCCceEEEC----------CeEEEEecCC-----CCC-CCcH
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAI----LSQLRSTAGKLSRE----------GTCAYVSQEA-----WIT-NDTL 132 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I----~Gl~~p~~G~I~i~----------G~ig~v~Q~~-----~l~-~~Tv 132 (280)
..++++.+| +++|+||||||||||+++| .|...|..|.+..+ ..+++++|++ .+. ..++
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 345667777 9999999999999999999 49999888765311 1478899986 112 2488
Q ss_pred HHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHH------HHHHHHHhcCCchhhhhhhhh
Q psy850 133 RHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQR------VALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 133 ~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQR------V~LARAL~~~p~i~~~~~ll~ 206 (280)
.+|+.+.. ..+.. ..+++++.+||+||+|| ++||||++.+| ++++
T Consensus 94 ~~~~~~~~---~~~~~--------------------~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p------~ill 144 (204)
T cd03240 94 LENVIFCH---QGESN--------------------WPLLDMRGRCSGGEKVLASLIIRLALAETFGSNC------GILA 144 (204)
T ss_pred hhceeeec---hHHHH--------------------HHHhcCccccCccHHHHHHHHHHHHHHHHhccCC------CEEE
Confidence 88886641 11100 01145567899999996 78999999988 8889
Q ss_pred hccccCCCCce
Q psy850 207 LLCPCVSLQSI 217 (280)
Q Consensus 207 ldep~~~l~~i 217 (280)
+|||++++|+.
T Consensus 145 lDEP~~~LD~~ 155 (204)
T cd03240 145 LDEPTTNLDEE 155 (204)
T ss_pred EcCCccccCHH
Confidence 99999999874
No 376
>KOG0064|consensus
Probab=99.77 E-value=1.3e-18 Score=170.00 Aligned_cols=140 Identities=24% Similarity=0.358 Sum_probs=103.1
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC--CeEEEEecCCCCCCCcHHHHHHhCCC---
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE--GTCAYVSQEAWITNDTLRHNILFGEP--- 141 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~--G~ig~v~Q~~~l~~~Tv~enI~~g~~--- 141 (280)
...++..++|.|++|-.+-|+||||||||+|+|+|.|+.+...|...+- .++-|+||.|.+--+|.+|.|.+...
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~ 573 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQ 573 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHH
Confidence 4457889999999999999999999999999999999999988887664 36899999998888899999988642
Q ss_pred -----CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 142 -----FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 142 -----~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+......+.+....++..++.. .+ ...+.+--..||||+|||+++||.++++| ++-+|||-|++.
T Consensus 574 ~~~kg~~d~dL~~iL~~v~L~~i~qr~-~g-~da~~dWkd~LsgGekQR~~mARm~yHrP------kyalLDEcTsAv 643 (728)
T KOG0064|consen 574 MKRKGYTDQDLEAILDIVHLEHILQRE-GG-WDAVRDWKDVLSGGEKQRMGMARMFYHRP------KYALLDECTSAV 643 (728)
T ss_pred HHhcCCCHHHHHHHHHHhhHHHHHHhc-cC-hhhhccHHhhccchHHHHHHHHHHHhcCc------chhhhhhhhccc
Confidence 2222333333333333222211 11 11112222359999999999999999998 777888877754
No 377
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.76 E-value=1.3e-18 Score=159.52 Aligned_cols=45 Identities=31% Similarity=0.457 Sum_probs=37.8
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 170 EIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 170 ~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.+++++.+||||||||+.|||||+.+| ..|++++||||++++|..
T Consensus 162 ~l~~~~~~LSgGe~QRl~LAraL~~~~---~~p~lllLDEPtsgLD~~ 206 (261)
T cd03271 162 KLGQPATTLSGGEAQRIKLAKELSKRS---TGKTLYILDEPTTGLHFH 206 (261)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhcCC---CCCcEEEEECCCCCCCHH
Confidence 357778899999999999999999973 124889999999999653
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.75 E-value=4.4e-19 Score=160.58 Aligned_cols=141 Identities=24% Similarity=0.207 Sum_probs=87.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCC-CceEEECC----------------eEEEEecCCC----------CCCCcHH
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLRST-AGKLSREG----------------TCAYVSQEAW----------ITNDTLR 133 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~p~-~G~I~i~G----------------~ig~v~Q~~~----------l~~~Tv~ 133 (280)
..+++|+||||||||||+++|++++.+. .|+++..+ ++.+++|++. .+..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999998876 34555422 4788999852 1245777
Q ss_pred HHHHhCCCC----C-h----hhHHHHHHHhhhhhh-Hh-hCCCCC-------chhhccCCCCCCHHHHHHHHHHHHHhc-
Q psy850 134 HNILFGEPF----E-P----QRYYKTLYNCALNTD-IH-ILPGGD-------QTEIGERGINLSGGQKQRVALARALYS- 194 (280)
Q Consensus 134 enI~~g~~~----~-~----~~~~~~~~~~~l~~~-l~-~l~~g~-------~~~i~~~~~~LSGGQrQRV~LARAL~~- 194 (280)
+++.++... . . ++....+....+..+ .. ..+++. ......++.+||||||||++|||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 777654321 0 1 111111211111100 00 000000 023456788999999999999999984
Q ss_pred --CCchhhhhhhhhhccccCCCCceEEEeehhhh
Q psy850 195 --NSFEQQTFHFLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 195 --~p~i~~~~~ll~ldep~~~l~~illlDE~~~~ 226 (280)
.| |+++++|||++++|..-...-.+++
T Consensus 185 ~~~~-----~~illlDEPt~~ld~~~~~~~~~~l 213 (251)
T cd03273 185 LFKP-----APMYILDEVDAALDLSHTQNIGRMI 213 (251)
T ss_pred hccC-----CCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 22 3889999999999875443333333
No 379
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=4.5e-18 Score=161.88 Aligned_cols=133 Identities=27% Similarity=0.340 Sum_probs=88.4
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeE-------------EEEecCCCCCCCcHHHHHH
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC-------------AYVSQEAWITNDTLRHNIL 137 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~i-------------g~v~Q~~~l~~~Tv~enI~ 137 (280)
+..||++|++||++-|+|.||||||||++.+.|+++|++|+|+++|+. +-||.+.++|+.++.
T Consensus 339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~---- 414 (546)
T COG4615 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG---- 414 (546)
T ss_pred ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----
Confidence 668999999999999999999999999999999999999999999852 334444444433221
Q ss_pred hCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 138 FGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 138 ~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+.. ...+...+-+....+...... .++.. -+..||.|||+|+++--|++-+. +
T Consensus 415 -~e~~as~q~i~~~LqrLel~~ktsl-~d~~f-----s~~kLStGQkKRlAll~AllEeR-------------------~ 468 (546)
T COG4615 415 -PEGKASPQLIEKWLQRLELAHKTSL-NDGRF-----SNLKLSTGQKKRLALLLALLEER-------------------D 468 (546)
T ss_pred -CccCCChHHHHHHHHHHHHhhhhcc-cCCcc-----cccccccchHHHHHHHHHHHhhC-------------------C
Confidence 111 111111111211111111111 11110 12359999999999999999987 6
Q ss_pred eEEEeehhhhhccCccc
Q psy850 217 ILLMEEVNVYVSKPIDK 233 (280)
Q Consensus 217 illlDE~~~~~~~~~~~ 233 (280)
|+++||...=-|+.+-.
T Consensus 469 Ilv~DEWAADQDPaFRR 485 (546)
T COG4615 469 ILVLDEWAADQDPAFRR 485 (546)
T ss_pred eEEeehhhccCChHHHH
Confidence 78888887776665544
No 380
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.74 E-value=4.7e-18 Score=167.01 Aligned_cols=152 Identities=23% Similarity=0.356 Sum_probs=109.4
Q ss_pred cccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEec
Q psy850 58 THLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQ 123 (280)
Q Consensus 58 ~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q 123 (280)
..++++++.....++|+||++++||+++|.|--|||+|-|+++|.|..++.+|+|.++|+ ++|||.
T Consensus 262 ~~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~E 341 (500)
T COG1129 262 PVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPE 341 (500)
T ss_pred cEEEEecCCCCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCc
Confidence 446777776665789999999999999999999999999999999999999999999995 799998
Q ss_pred CC----CCCCCcHHHHHHhCCC--CChh-hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCC
Q psy850 124 EA----WITNDTLRHNILFGEP--FEPQ-RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196 (280)
Q Consensus 124 ~~----~l~~~Tv~enI~~g~~--~~~~-~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p 196 (280)
+. .+...+|.+|+.+... +... .+...............+. -..........+||||.||+|.|||.|+.+|
T Consensus 342 DRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~-Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p 420 (500)
T COG1129 342 DRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR-IKTPSPEQPIGTLSGGNQQKVVLARWLATDP 420 (500)
T ss_pred ccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcC-cccCCccchhhcCCchhhhhHHHHHHHhcCC
Confidence 74 3557899999987511 0000 0111111111111122111 0112233456789999999999999999998
Q ss_pred chhhhhhhhhhccccCCCCc
Q psy850 197 FEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 197 ~i~~~~~ll~ldep~~~l~~ 216 (280)
++|||||||.+.|-
T Consensus 421 ------~vLilDEPTRGIDV 434 (500)
T COG1129 421 ------KVLILDEPTRGIDV 434 (500)
T ss_pred ------CEEEECCCCcCccc
Confidence 77788888877653
No 381
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.74 E-value=3.8e-19 Score=153.78 Aligned_cols=137 Identities=26% Similarity=0.292 Sum_probs=102.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCC-CCCCCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEA-WITNDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~-~l~~~Tv~e 134 (280)
.-|-.+|.++..||++-+||||||||||||-.++|++ |.+|+|.++|. .+|+.|+. ..|.+.|+.
T Consensus 13 tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 3467889999999999999999999999999999987 57999999984 47888863 556778999
Q ss_pred HHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhc-CCchhhhhhhhhhccccCC
Q psy850 135 NILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYS-NSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 135 nI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~-~p~i~~~~~ll~ldep~~~ 213 (280)
.+.+..+. ... ...+. .....+ +..+.+++...+|||||-|||-+|...++ -||+.-..++|++|||-+.
T Consensus 92 YL~L~qP~-~~~-a~~i~-----~i~~~L--~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~ 162 (248)
T COG4138 92 YLTLHQPD-KTR-TELLN-----DVAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNS 162 (248)
T ss_pred hhhhcCch-HHH-HHHHH-----HHHhhh--cccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcc
Confidence 88876543 111 11111 111111 23344556677899999999999988776 5666556789999999888
Q ss_pred CC
Q psy850 214 LQ 215 (280)
Q Consensus 214 l~ 215 (280)
+|
T Consensus 163 LD 164 (248)
T COG4138 163 LD 164 (248)
T ss_pred hh
Confidence 75
No 382
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.72 E-value=1e-17 Score=161.61 Aligned_cols=130 Identities=22% Similarity=0.242 Sum_probs=93.9
Q ss_pred eeeeeeEE-----eeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCC-CCCCCcHHHHHHhCCC--
Q psy850 70 ALVDINFF-----APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEA-WITNDTLRHNILFGEP-- 141 (280)
Q Consensus 70 vL~~Isl~-----i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~-~l~~~Tv~enI~~g~~-- 141 (280)
.+.+..|+ |..||+++++||||-|||||.++|+|.++|++|. ..+=+++|=||.- .-+++||++.+.-...
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~ 429 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSA 429 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCCcHHHHHHHhhhhh
Confidence 34556665 4567899999999999999999999999999998 4444789999973 3468899988754221
Q ss_pred CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 142 FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+...++...+. -|......+.++..+|||||.|||+||.||.+++|+| +||||..-||.
T Consensus 430 ~~~s~~~~ei~----------~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlY------llDEPSA~LDv 488 (591)
T COG1245 430 FGSSYFKTEIV----------KPLNLEDLLERPVDELSGGELQRVAIAAALSREADLY------LLDEPSAYLDV 488 (591)
T ss_pred cccchhHHhhc----------CccchHHHHhcccccCCchhHHHHHHHHHhccccCEE------EecCchhhccH
Confidence 11112211110 1222334455667789999999999999999999554 88998887764
No 383
>KOG0927|consensus
Probab=99.72 E-value=2.6e-17 Score=161.31 Aligned_cols=153 Identities=24% Similarity=0.272 Sum_probs=94.3
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCC---
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFE--- 143 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~--- 143 (280)
+...++|+.|++.+|+.+||+|||||||||+|++|.|-..|..-++-+ ....++...-..++.+.+.+.....
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~----y~ls~e~~ps~~~av~~v~~~~~~e~~r 162 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF----YLLSREIEPSEKQAVQAVVMETDHERKR 162 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch----hhhcccCCCchHHHHHHHhhhhHHHHHH
Confidence 466899999999999999999999999999999999999997665532 1233332211223322222111000
Q ss_pred ----hhhHHH---------------HHHHhhh-------hhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCc
Q psy850 144 ----PQRYYK---------------TLYNCAL-------NTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSF 197 (280)
Q Consensus 144 ----~~~~~~---------------~~~~~~l-------~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~ 197 (280)
.+++.. ....... ...+..+ ........+....||||||.|++|||||+.+|
T Consensus 163 le~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl-gf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP- 240 (614)
T KOG0927|consen 163 LEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL-GFLSEMQDKKVKDLSGGWRMRAALARALFQKP- 240 (614)
T ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc-CCCHhHHHHHhhccCchHHHHHHHHHHHhcCC-
Confidence 000000 0000000 0000000 11223344556789999999999999999998
Q ss_pred hhhhhhhhhhccccCCCCc--eEEEeehhhhhccC
Q psy850 198 EQQTFHFLVLLCPCVSLQS--ILLMEEVNVYVSKP 230 (280)
Q Consensus 198 i~~~~~ll~ldep~~~l~~--illlDE~~~~~~~~ 230 (280)
+||+|||||.+||. +..|.|.-.-.|.+
T Consensus 241 -----~LLLLDEPtnhLDleA~~wLee~L~k~d~~ 270 (614)
T KOG0927|consen 241 -----DLLLLDEPTNHLDLEAIVWLEEYLAKYDRI 270 (614)
T ss_pred -----CEEEecCCccCCCHHHHHHHHHHHHhccCc
Confidence 89999999999975 55565554444443
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=9.7e-19 Score=155.42 Aligned_cols=141 Identities=16% Similarity=0.048 Sum_probs=83.2
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCC-CCcHHHHHHhCCCCCh
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT-NDTLRHNILFGEPFEP 144 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~-~~Tv~enI~~g~~~~~ 144 (280)
.+..++++++| ++++|+|||||||||++++|.-..-.....+. ..++++++|+..++ ..+++++..+......
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMR-QKKLSDLIHNSAGHPNLDSCSVEVHFQEIID 88 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhh-hhhHHHHhcCCCCCCCCceEEEEEEEEeCCC
Confidence 45667888887 89999999999999999999722111101111 13578888876543 4466666544321110
Q ss_pred hhHHHH--HHHhh------hhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhc---CCchhhhhhhhhhccccCC
Q psy850 145 QRYYKT--LYNCA------LNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYS---NSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 145 ~~~~~~--~~~~~------l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~---~p~i~~~~~ll~ldep~~~ 213 (280)
....+. ..... ........ ........++..||+|||||++||||++. +| |+++++|||+.+
T Consensus 89 ~~~l~~~g~~~~~~~~~v~~~~~~~~~--~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~-----p~ililDEPt~g 161 (212)
T cd03274 89 KPLLKSKGIDLDHNRFLILQGEVEQIA--QMPKKSWKNISNLSGGEKTLSSLALVFALHHYKP-----TPLYVMDEIDAA 161 (212)
T ss_pred HHHHHHCCcCCCCCceEEcCCcEEEee--ccccccccchhhcCHHHHHHHHHHHHHHhcccCC-----CCEEEEcCCCcC
Confidence 000000 00000 00000111 11222344567899999999999999974 22 488999999999
Q ss_pred CCceEE
Q psy850 214 LQSILL 219 (280)
Q Consensus 214 l~~ill 219 (280)
+|+.-.
T Consensus 162 LD~~~~ 167 (212)
T cd03274 162 LDFRNV 167 (212)
T ss_pred CCHHHH
Confidence 987433
No 385
>KOG0065|consensus
Probab=99.70 E-value=7.4e-18 Score=178.25 Aligned_cols=140 Identities=24% Similarity=0.323 Sum_probs=104.6
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCceEEECCe----------EEEEecCC-CCCCCcHH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR--STAGKLSREGT----------CAYVSQEA-WITNDTLR 133 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~--p~~G~I~i~G~----------ig~v~Q~~-~l~~~Tv~ 133 (280)
.+..|+||+=-++||.++||+|+|||||||||++|+|... -.+|+|+++|. +|||-|+. ++...||+
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 4568999999999999999999999999999999999753 24688889883 79999985 66788999
Q ss_pred HHHHhCCCC------ChhhHHHHHHHhhhhhhHhh--CCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhh
Q psy850 134 HNILFGEPF------EPQRYYKTLYNCALNTDIHI--LPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFL 205 (280)
Q Consensus 134 enI~~g~~~------~~~~~~~~~~~~~l~~~l~~--l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll 205 (280)
|.+.|.... ..++..+-+++ .++. ++.-.+..++..+..||..||+|+.||--|+.+|+ .+|
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~-----Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~-----~il 952 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEE-----VIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPS-----SIL 952 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHH-----HHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCc-----eeE
Confidence 999886321 11111111111 1111 11123456677787899999999999999999982 456
Q ss_pred hhccccCCCCc
Q psy850 206 VLLCPCVSLQS 216 (280)
Q Consensus 206 ~ldep~~~l~~ 216 (280)
+|||||++||.
T Consensus 953 FLDEPTSGLDs 963 (1391)
T KOG0065|consen 953 FLDEPTSGLDS 963 (1391)
T ss_pred EecCCCCCccH
Confidence 68888888875
No 386
>KOG0062|consensus
Probab=99.69 E-value=2.2e-17 Score=161.05 Aligned_cols=128 Identities=33% Similarity=0.399 Sum_probs=80.2
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCC----------CCCCCcHHHH
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEA----------WITNDTLRHN 135 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~----------~l~~~Tv~en 135 (280)
+.+..|.+-++++..|..+||||+||+|||||||+|+. |.|.... +.|+. .+...+.+..
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~----veqE~~g~~t~~~~~~l~~D~~~~d 160 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFH----VEQEVRGDDTEALQSVLESDTERLD 160 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccC----chhheeccchHHHhhhhhccHHHHH
Confidence 46778999999999999999999999999999999997 4443221 22221 1111222222
Q ss_pred HHhCC-CCChh-hHHHHHHHhhhhhhHhhCCCCCchhhc-cCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGE-PFEPQ-RYYKTLYNCALNTDIHILPGGDQTEIG-ERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~-~~~~~-~~~~~~~~~~l~~~l~~l~~g~~~~i~-~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
++.-. ..... ...+.... .+..+ |...+.. .+..+||||.|.|++|||||..+| |+|+|||||.
T Consensus 161 fl~~e~~l~~~~~l~ei~~~-----~L~gl--GFt~emq~~pt~slSGGWrMrlaLARAlf~~p------DlLLLDEPTN 227 (582)
T KOG0062|consen 161 FLAEEKELLAGLTLEEIYDK-----ILAGL--GFTPEMQLQPTKSLSGGWRMRLALARALFAKP------DLLLLDEPTN 227 (582)
T ss_pred HHHhhhhhhccchHHHHHHH-----HHHhC--CCCHHHHhccccccCcchhhHHHHHHHHhcCC------CEEeecCCcc
Confidence 22110 00000 00000000 11111 3333333 344579999999999999999998 8899999999
Q ss_pred CCCc
Q psy850 213 SLQS 216 (280)
Q Consensus 213 ~l~~ 216 (280)
+||-
T Consensus 228 hLDv 231 (582)
T KOG0062|consen 228 HLDV 231 (582)
T ss_pred cchh
Confidence 8875
No 387
>KOG0066|consensus
Probab=99.67 E-value=1.1e-16 Score=154.18 Aligned_cols=134 Identities=25% Similarity=0.291 Sum_probs=96.8
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCC--C-CCCcHHHHHHhCC
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAW--I-TNDTLRHNILFGE 140 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~--l-~~~Tv~enI~~g~ 140 (280)
+.++.++.++|-|.--..+|||||||.||||||++|.|.+.|..|+.+-+. +||+.-|... + ...|..|.+.-..
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F 677 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKF 677 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhc
Confidence 345678899999999999999999999999999999999999999997765 4888888642 2 2347777765332
Q ss_pred CCChhhHHHHHHHhhhhhhHhhCCCCCchhhc-cCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 141 PFEPQRYYKTLYNCALNTDIHILPGGDQTEIG-ERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~-~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
....+..++.+....+ ..+.. -....|||||+.||+||---+..| |+|||||||.++|-
T Consensus 678 Nlpyq~ARK~LG~fGL-----------~sHAHTikikdLSGGQKaRValaeLal~~P------DvlILDEPTNNLDI 737 (807)
T KOG0066|consen 678 NLPYQEARKQLGTFGL-----------ASHAHTIKIKDLSGGQKARVALAELALGGP------DVLILDEPTNNLDI 737 (807)
T ss_pred CCChHHHHHHhhhhhh-----------hhccceEeeeecCCcchHHHHHHHHhcCCC------CEEEecCCCCCcch
Confidence 2222222222221111 11111 124569999999999999888887 88999999999975
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.65 E-value=2.9e-16 Score=138.12 Aligned_cols=122 Identities=21% Similarity=0.165 Sum_probs=77.2
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----ce----EEECC----eEEEEecCCCCCCCcHHHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTA-----GK----LSREG----TCAYVSQEAWITNDTLRHNI 136 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~-----G~----I~i~G----~ig~v~Q~~~l~~~Tv~enI 136 (280)
.++++++++.+| +++|+||||||||||+.+|.-.+.... |. +...| .+.+.+|+.-++. |
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 356788888887 889999999999999999874322211 21 00011 3567777654333 1
Q ss_pred HhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHH----hcCCchhhhhhhhhhccccC
Q psy850 137 LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL----YSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 137 ~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL----~~~p~i~~~~~ll~ldep~~ 212 (280)
...... ...+ ...+.. .....+++.+||+|||||++||||| +.+| +++++|||+.
T Consensus 84 ----~~~~~~-~~~~-----~~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p------~illlDEP~~ 142 (198)
T cd03276 84 ----PLCVLS-QDMA-----RSFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMES------PFRCLDEFDV 142 (198)
T ss_pred ----cCCHHH-HHHH-----HHHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCC------CEEEecCccc
Confidence 110000 0111 111111 2224567789999999999999999 4777 8889999999
Q ss_pred CCCceEE
Q psy850 213 SLQSILL 219 (280)
Q Consensus 213 ~l~~ill 219 (280)
++|..-.
T Consensus 143 glD~~~~ 149 (198)
T cd03276 143 FMDMVNR 149 (198)
T ss_pred ccCHHHH
Confidence 9987533
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.65 E-value=8.3e-17 Score=145.59 Aligned_cols=139 Identities=24% Similarity=0.232 Sum_probs=79.2
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC------------------eEE--EEecCCC--CCCCcHH
Q psy850 76 FFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------------TCA--YVSQEAW--ITNDTLR 133 (280)
Q Consensus 76 l~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G------------------~ig--~v~Q~~~--l~~~Tv~ 133 (280)
|.+.++ +++|+|||||||||||.+|++.+.+..|.++..+ .+. |..|++. ++..++.
T Consensus 18 ~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 18 IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 444444 9999999999999999999998877666664321 122 3333321 1111221
Q ss_pred HHH-Hh---CCCCChhhHHHHHHHhhhhhhHh--hCCCCCchhh---------ccCCCCCCHHHHHHHHHHHHHhcCCch
Q psy850 134 HNI-LF---GEPFEPQRYYKTLYNCALNTDIH--ILPGGDQTEI---------GERGINLSGGQKQRVALARALYSNSFE 198 (280)
Q Consensus 134 enI-~~---g~~~~~~~~~~~~~~~~l~~~l~--~l~~g~~~~i---------~~~~~~LSGGQrQRV~LARAL~~~p~i 198 (280)
+.. .+ +.......+.+.+..+.+..+.. ..+++..+.+ ..++.+||+|||||++||||++.++
T Consensus 97 ~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~-- 174 (247)
T cd03275 97 GGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS-- 174 (247)
T ss_pred CCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc--
Confidence 111 11 11122233334444444322110 0112222222 2234789999999999999998751
Q ss_pred hhhhhhhhhccccCCCCce
Q psy850 199 QQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 199 ~~~~~ll~ldep~~~l~~i 217 (280)
+..|+++++|||++++|..
T Consensus 175 ~~~p~~lllDEPt~~LD~~ 193 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNT 193 (247)
T ss_pred cCCCCEEEEecccccCCHH
Confidence 1224889999999999874
No 390
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.62 E-value=1e-15 Score=168.07 Aligned_cols=40 Identities=33% Similarity=0.517 Sum_probs=34.6
Q ss_pred ccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHH
Q psy850 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLY 99 (280)
Q Consensus 59 ~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk 99 (280)
.++++++.. ..|+++||+|++||+++|+|+||||||||++
T Consensus 600 ~L~l~~~~~-~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKATK-HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEecccc-CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 356666543 3699999999999999999999999999999
No 391
>KOG2355|consensus
Probab=99.60 E-value=1.3e-15 Score=134.85 Aligned_cols=157 Identities=25% Similarity=0.337 Sum_probs=109.4
Q ss_pred CCCeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCc
Q psy850 14 KSSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSG 93 (280)
Q Consensus 14 ~~~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsG 93 (280)
.+.+|++.+.+|.|+... +++-|+|++++.|...-++|.||||
T Consensus 10 ~~~aievsgl~f~y~~~d-------------------------------------P~~~Dfnldlp~gsRcLlVGaNGaG 52 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSD-------------------------------------PIFFDFNLDLPAGSRCLLVGANGAG 52 (291)
T ss_pred ccceEEEeccEEecccCC-------------------------------------ceEEEEeeccCCCceEEEEecCCCc
Confidence 466899999999887642 4678999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCceEEECCeE-------------EEEecC----------CCCC-CCcHHHHHHhCCCCC-hhhHH
Q psy850 94 KSALLYAILSQLRSTAGKLSREGTC-------------AYVSQE----------AWIT-NDTLRHNILFGEPFE-PQRYY 148 (280)
Q Consensus 94 KSTLLk~I~Gl~~p~~G~I~i~G~i-------------g~v~Q~----------~~l~-~~Tv~enI~~g~~~~-~~~~~ 148 (280)
||||||+|+|-.-.-.|.|.+.|+- .|+--+ ..+. +.++.+- .++.... .++..
T Consensus 53 KtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~m-ifgV~g~dp~Rre 131 (291)
T KOG2355|consen 53 KTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHM-IFGVGGDDPERRE 131 (291)
T ss_pred hhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHH-HhhccCCChhHhh
Confidence 9999999999887777888887742 222111 1111 2344333 3332221 12211
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEEEeehhhhh
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEEVNVYV 227 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~illlDE~~~~~ 227 (280)
+.+.. + ++ .+.=|.+.+|-|||+||.|++.|+.. ++.|+|||.|-.+|-+-.+|-.+++-
T Consensus 132 ~LI~i--L--DI---------dl~WRmHkvSDGqrRRVQicMGLL~P------fkVLLLDEVTVDLDVlARadLLeFlk 191 (291)
T KOG2355|consen 132 KLIDI--L--DI---------DLRWRMHKVSDGQRRRVQICMGLLKP------FKVLLLDEVTVDLDVLARADLLEFLK 191 (291)
T ss_pred hhhhh--e--ec---------cceEEEeeccccchhhhHHHHhcccc------eeEEEeeeeEeehHHHHHHHHHHHHH
Confidence 11111 0 11 11224567999999999999999863 69999999999999998888877764
No 392
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.58 E-value=6.1e-15 Score=155.31 Aligned_cols=43 Identities=33% Similarity=0.497 Sum_probs=36.5
Q ss_pred ccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHH
Q psy850 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102 (280)
Q Consensus 59 ~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~ 102 (280)
.++++++.. ..|++++|+|++|++++|+|+||||||||++.++
T Consensus 614 ~L~v~~l~~-~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGARE-NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCcc-CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 356666653 3599999999999999999999999999998764
No 393
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.55 E-value=1.1e-14 Score=141.77 Aligned_cols=149 Identities=26% Similarity=0.416 Sum_probs=108.3
Q ss_pred ccccccc-----cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------------E
Q psy850 59 HLKAEDV-----ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------------C 118 (280)
Q Consensus 59 ~l~~~~~-----~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------------i 118 (280)
.|+++++ .+...+++|||+|++||+++|.|-.|-|-+-|+.+|+|+.++.+|+|.++|+ +
T Consensus 257 vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~ 336 (501)
T COG3845 257 VLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGL 336 (501)
T ss_pred EEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCC
Confidence 4566655 2346799999999999999999999999999999999999999999999984 4
Q ss_pred EEEecCC----CCCCCcHHHHHHhCCCCCh----hhH--HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHH
Q psy850 119 AYVSQEA----WITNDTLRHNILFGEPFEP----QRY--YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVAL 188 (280)
Q Consensus 119 g~v~Q~~----~l~~~Tv~enI~~g~~~~~----~~~--~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~L 188 (280)
+|||.+. ....+|+.||+.++..... ..+ ...+.... ...++.+... ......+...||||++||+-+
T Consensus 337 ~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-~~li~~fdVr-~~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 337 AYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-RELIEEFDVR-APSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred ccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-HHHHHHcCcc-CCCCCcchhhcCCcceehhhh
Confidence 7999985 3568899999988653211 000 01111110 1111111110 111223456799999999999
Q ss_pred HHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 189 ARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 189 ARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
||-|..+| ++||+-+||.++|
T Consensus 415 aREl~~~p------~lLI~~qPTrGLD 435 (501)
T COG3845 415 ARELARRP------DLLIAAQPTRGLD 435 (501)
T ss_pred hhhhccCC------CEEEEcCCCcccc
Confidence 99999998 8899999999986
No 394
>KOG0062|consensus
Probab=99.52 E-value=1e-14 Score=142.46 Aligned_cols=132 Identities=25% Similarity=0.312 Sum_probs=96.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCC-CCCcHHHHHHhCCCC---
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWI-TNDTLRHNILFGEPF--- 142 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l-~~~Tv~enI~~g~~~--- 142 (280)
..+.++++++.--..++++|+||+||||+++++.+...|..|.+.+.+ +++|-+|...- ++..+.+.-.+...+
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~ 457 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK 457 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence 578889999999999999999999999999999999999999998876 58999997532 233332222221111
Q ss_pred ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 143 EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 143 ~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
..+.+++.+....+...+. ......||||||-||+||.....+| .+|||||||..||.
T Consensus 458 ~~ee~r~hl~~~Gl~g~la----------~~si~~LSGGQKsrvafA~~~~~~P------hlLVLDEPTNhLD~ 515 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELA----------LQSIASLSGGQKSRVAFAACTWNNP------HLLVLDEPTNHLDR 515 (582)
T ss_pred CHHHHHHHHHhcCCCchhh----------hccccccCCcchhHHHHHHHhcCCC------cEEEecCCCccccH
Confidence 2334444433333222221 1224569999999999999999998 88999999998874
No 395
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.51 E-value=1.4e-14 Score=138.90 Aligned_cols=134 Identities=25% Similarity=0.298 Sum_probs=89.7
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC--------CCCCCceEEECC-e-EEEEecC--CCCCCCcHHH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ--------LRSTAGKLSREG-T-CAYVSQE--AWITNDTLRH 134 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl--------~~p~~G~I~i~G-~-ig~v~Q~--~~l~~~Tv~e 134 (280)
...+++||||+|++|++++|+|+||+||||+|++|+|. ++|++|.|.+-- . -+.+|-+ |.+-..|+.+
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 34689999999999999999999999999999999986 478899887642 2 2344443 2332336666
Q ss_pred HHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 135 NILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 135 nI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
.+.-- .-+.......+....+ .+......+..+||-|||.|+.||++++.+| .+++.||.++.+
T Consensus 475 hl~s~-tGD~~~AveILnraGl---------sDAvlyRr~f~ELStGQKeR~KLAkllaerp------n~~~iDEF~AhL 538 (593)
T COG2401 475 HLRSK-TGDLNAAVEILNRAGL---------SDAVLYRRKFSELSTGQKERAKLAKLLAERP------NVLLIDEFAAHL 538 (593)
T ss_pred HHhhc-cCchhHHHHHHHhhcc---------chhhhhhccHhhcCcchHHHHHHHHHHhcCC------CcEEhhhhhhhc
Confidence 55321 0011111122222211 2222334556789999999999999999998 666777777665
Q ss_pred Cc
Q psy850 215 QS 216 (280)
Q Consensus 215 ~~ 216 (280)
|+
T Consensus 539 D~ 540 (593)
T COG2401 539 DE 540 (593)
T ss_pred CH
Confidence 54
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.49 E-value=2.7e-14 Score=125.23 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=67.6
Q ss_pred eeeeeEEeeCCc-EEEEECCCCCcHHHHHHHHH--------cCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCC
Q psy850 71 LVDINFFAPKGK-LVGICGAVGSGKSALLYAIL--------SQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEP 141 (280)
Q Consensus 71 L~~Isl~i~~Ge-ivaIiGpnGsGKSTLLk~I~--------Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~ 141 (280)
+.++||++.+|+ +++|+|||||||||||++|. |...|....+ .++|+.|.... +
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----~~~~~~~~~~~----------l--- 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----SLPVFENIFAD----------I--- 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----cCcCccEEEEe----------c---
Confidence 457899999995 89999999999999999998 5444432211 11222221000 0
Q ss_pred CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 142 FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+....+.+...++|+|||||+.|++++ .+| +++++|||+.++|..
T Consensus 80 ------------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p------~llllDEp~~glD~~ 124 (200)
T cd03280 80 ------------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPD------SLVLLDELGSGTDPV 124 (200)
T ss_pred ------------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCC------cEEEEcCCCCCCCHH
Confidence 001112233456999999999999985 555 889999999999864
No 397
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.47 E-value=8.5e-14 Score=111.58 Aligned_cols=64 Identities=22% Similarity=0.116 Sum_probs=56.1
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRH 134 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~e 134 (280)
..+|++++|++++|++++|+||||||||||++++. .|++.+.|. ++|++|+ ++..|+++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 35899999999999999999999999999999986 788988773 4677777 78899999
Q ss_pred HHHhC
Q psy850 135 NILFG 139 (280)
Q Consensus 135 nI~~g 139 (280)
||.+.
T Consensus 74 Ni~~~ 78 (107)
T cd00820 74 NIFLI 78 (107)
T ss_pred hceee
Confidence 99873
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.47 E-value=2.2e-14 Score=138.83 Aligned_cols=121 Identities=24% Similarity=0.297 Sum_probs=79.6
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-----------ECC-------------e--EEEEecC----CC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS-----------REG-------------T--CAYVSQE----AW 126 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~-----------i~G-------------~--ig~v~Q~----~~ 126 (280)
..++|++++|+||||-||||.+++|+|.+.|.=|+.. +.| . +..=+|- |-
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 3579999999999999999999999999999877642 111 1 1222221 22
Q ss_pred CCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhh
Q psy850 127 ITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLV 206 (280)
Q Consensus 127 l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ 206 (280)
...++|.|.+.--.. .....+.+... ++...+++...+||||+.||++||.|+.+++| +.+
T Consensus 176 ~~KG~v~elLk~~de--~g~~devve~l-----------~L~nvl~r~v~~LSGGELQr~aIaa~l~rdAD------vY~ 236 (591)
T COG1245 176 VVKGKVGELLKKVDE--RGKFDEVVERL-----------GLENVLDRDVSELSGGELQRVAIAAALLRDAD------VYF 236 (591)
T ss_pred HhcchHHHHHHhhhh--cCcHHHHHHHh-----------cchhhhhhhhhhcCchHHHHHHHHHHHhccCC------EEE
Confidence 334555555432110 00111222211 23334456677899999999999999999994 458
Q ss_pred hccccCCCCc
Q psy850 207 LLCPCVSLQS 216 (280)
Q Consensus 207 ldep~~~l~~ 216 (280)
.|||++-||-
T Consensus 237 FDEpsSyLDi 246 (591)
T COG1245 237 FDEPSSYLDI 246 (591)
T ss_pred EcCCcccccH
Confidence 9999998754
No 399
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=1.8e-13 Score=144.02 Aligned_cols=42 Identities=33% Similarity=0.470 Sum_probs=35.3
Q ss_pred ccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHH
Q psy850 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAI 101 (280)
Q Consensus 59 ~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I 101 (280)
.++++++..+ .|++++|+|++|++++|+|+||||||||++-+
T Consensus 612 ~l~l~~~~~~-~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~ 653 (924)
T TIGR00630 612 FLTLKGAREN-NLKNITVSIPLGLFTCITGVSGSGKSTLINDT 653 (924)
T ss_pred eEEEEeCccC-CcCceEEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence 3566666533 59999999999999999999999999999843
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.46 E-value=3.7e-14 Score=122.91 Aligned_cols=120 Identities=25% Similarity=0.245 Sum_probs=65.1
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHHHH
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTL 151 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~ 151 (280)
++..+...++.+.+|+||||||||++|.+|.=.+--.+-.......... ..+.+..+... .+ +
T Consensus 13 ~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~----v 75 (178)
T cd03239 13 RDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFL-----------AGGGVKAGINS--AS----V 75 (178)
T ss_pred CCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhh-----------cccccCCCCce--EE----E
Confidence 4444544444499999999999999999985322111000000000000 00001111000 00 0
Q ss_pred HHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 152 YNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 152 ~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.......+..++.++.+++ ||+|||||++|||+++... +..|+++++|||++++|.-
T Consensus 76 -~~~f~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~--~~~p~llilDEp~~~LD~~ 132 (178)
T cd03239 76 -EITFDKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQE--IKPSPFYVLDEIDAALDPT 132 (178)
T ss_pred -EEEEECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhc--CCCCCEEEEECCCCCCCHH
Confidence 0001112445666776665 9999999999999996311 1123788889999888763
No 401
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.40 E-value=1.6e-13 Score=122.16 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=99.6
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC----CCceEEECC-----------------eEEEEecCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS----TAGKLSREG-----------------TCAYVSQEAW 126 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p----~~G~I~i~G-----------------~ig~v~Q~~~ 126 (280)
..+++++|+++.+||+-++||++|||||-..|+|+|..+- +.-+.++++ .++++||+|.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 3579999999999999999999999999999999998753 122223332 3689999985
Q ss_pred CC---CCcHHHHHHhCC---CCChhhHHHHH---HHhhhhhhHhhC-CCCCchhhccCCCCCCHHHHHHHHHHHHHhcCC
Q psy850 127 IT---NDTLRHNILFGE---PFEPQRYYKTL---YNCALNTDIHIL-PGGDQTEIGERGINLSGGQKQRVALARALYSNS 196 (280)
Q Consensus 127 l~---~~Tv~enI~~g~---~~~~~~~~~~~---~~~~l~~~l~~l-~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p 196 (280)
-. ..+|...+.-.. .+.. ++++.. +..+++ .+... -....+....+|.+|--|+=|+|+||.|++.+|
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkg-rWWq~F~WrKrrAIe-LLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqP 177 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKG-RWWQRFGWRKRRAIE-LLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQP 177 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccc-hHhhhhchhHHHHHH-HHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCC
Confidence 32 234544443221 1221 122111 001111 11111 011223456789999999999999999999998
Q ss_pred chhhhhhhhhhccccCCCCceEEEeehhhh
Q psy850 197 FEQQTFHFLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 197 ~i~~~~~ll~ldep~~~l~~illlDE~~~~ 226 (280)
++||+|||+.+.+++-......++
T Consensus 178 ------rLLIADEPTN~~e~~Tq~QifRLL 201 (330)
T COG4170 178 ------RLLIADEPTNSMEPTTQAQIFRLL 201 (330)
T ss_pred ------ceEeccCCCcccCccHHHHHHHHH
Confidence 999999999999887655444443
No 402
>KOG0066|consensus
Probab=99.38 E-value=6e-13 Score=128.59 Aligned_cols=153 Identities=23% Similarity=0.306 Sum_probs=94.9
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhC-------
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG------- 139 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g------- 139 (280)
++..+.+.||.|-.|..+++|||||-||||||+-|+..--...-.| .+-||-|+......+..+.|+-.
T Consensus 276 Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnI----DvLlCEQEvvad~t~Ai~tvl~aD~kRl~l 351 (807)
T KOG0066|consen 276 GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNI----DVLLCEQEVVADSTSAIDTVLKADKKRLAL 351 (807)
T ss_pred cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCC----ceEeeeeeeeecCcHHHHHHHHhhHHHHHH
Confidence 4567889999999999999999999999999999975421111112 24566776443333333333211
Q ss_pred --------------CCCChhhHHHHHHHh------hhhhh-HhhC-CCCCchhhccCCCC-CCHHHHHHHHHHHHHhcCC
Q psy850 140 --------------EPFEPQRYYKTLYNC------ALNTD-IHIL-PGGDQTEIGERGIN-LSGGQKQRVALARALYSNS 196 (280)
Q Consensus 140 --------------~~~~~~~~~~~~~~~------~l~~~-l~~l-~~g~~~~i~~~~~~-LSGGQrQRV~LARAL~~~p 196 (280)
.....++......+. ..+.. ...+ -.|...++.++|.+ +|||.|.||+|||||+.+|
T Consensus 352 Leee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEP 431 (807)
T KOG0066|consen 352 LEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEP 431 (807)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCc
Confidence 000011111111110 00000 0111 11344455566665 9999999999999999998
Q ss_pred chhhhhhhhhhccccCCCC--ceEEEeehhhhhcc
Q psy850 197 FEQQTFHFLVLLCPCVSLQ--SILLMEEVNVYVSK 229 (280)
Q Consensus 197 ~i~~~~~ll~ldep~~~l~--~illlDE~~~~~~~ 229 (280)
-||.|||||..+| .++.||-.--+|-+
T Consensus 432 ------TLLMLDEPTNHLDLNAVIWLdNYLQgWkK 460 (807)
T KOG0066|consen 432 ------TLLMLDEPTNHLDLNAVIWLDNYLQGWKK 460 (807)
T ss_pred ------eeeeecCCccccccceeeehhhHHhhhhh
Confidence 8999999999885 58888877665544
No 403
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.36 E-value=7.9e-13 Score=117.66 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=32.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHh----cCCchhhhhhhhhhccccCCCCceEE
Q psy850 172 GERGINLSGGQKQRVALARALY----SNSFEQQTFHFLVLLCPCVSLQSILL 219 (280)
Q Consensus 172 ~~~~~~LSGGQrQRV~LARAL~----~~p~i~~~~~ll~ldep~~~l~~ill 219 (280)
..++.+||+|||||+.+|++|+ .+| +++++|||+.++|+.-.
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p------~llllDEP~~~LD~~~~ 166 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRC------PFRVVDEINQGMDPTNE 166 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCC------CEEEEecccccCCHHHH
Confidence 4467789999999998876654 566 77888888888876433
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.31 E-value=2.9e-12 Score=108.87 Aligned_cols=100 Identities=28% Similarity=0.249 Sum_probs=63.6
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--EEE-EecCCCCCCCcHHHHHHhCCCCChhhHHH
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--CAY-VSQEAWITNDTLRHNILFGEPFEPQRYYK 149 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--ig~-v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~ 149 (280)
..++.+.++.++.|+|||||||||+++++....-...|.+..... .++ +++.. +.+
T Consensus 13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~----------- 71 (162)
T cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS----------AEL----------- 71 (162)
T ss_pred ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE----------EEE-----------
Confidence 345556666799999999999999999986655444444433111 000 00000 000
Q ss_pred HHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 150 TLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 150 ~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+ + -..+||+||+||+.|||+|...+ +..|+++++|||+.++|+.
T Consensus 72 ----------i--~----------~~~~lS~G~~~~~~la~~L~~~~--~~~~~llllDEp~~gld~~ 115 (162)
T cd03227 72 ----------I--F----------TRLQLSGGEKELSALALILALAS--LKPRPLYILDEIDRGLDPR 115 (162)
T ss_pred ----------e--h----------heeeccccHHHHHHHHHHHHhcC--CCCCCEEEEeCCCCCCCHH
Confidence 0 0 00239999999999999998632 0124888999999998874
No 405
>KOG0065|consensus
Probab=99.31 E-value=1.9e-12 Score=137.77 Aligned_cols=153 Identities=24% Similarity=0.297 Sum_probs=106.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC---CCceEEECCe----------EEEEecCC-CCCCCcHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS---TAGKLSREGT----------CAYVSQEA-WITNDTLR 133 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p---~~G~I~i~G~----------ig~v~Q~~-~l~~~Tv~ 133 (280)
..+|+|++.-+++|+++-++||.||||||||++++|..+- ..|+|.++|. ++|++|+. .++.+||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3589999999999999999999999999999999998753 2568999883 79999975 56688999
Q ss_pred HHHHhCCCCC--hhhHH---HHHHHh-hhhhh--HhhCCCCCchhhccCC-CCCCHHHHHHHHHHHHHhcCCchhhhhhh
Q psy850 134 HNILFGEPFE--PQRYY---KTLYNC-ALNTD--IHILPGGDQTEIGERG-INLSGGQKQRVALARALYSNSFEQQTFHF 204 (280)
Q Consensus 134 enI~~g~~~~--~~~~~---~~~~~~-~l~~~--l~~l~~g~~~~i~~~~-~~LSGGQrQRV~LARAL~~~p~i~~~~~l 204 (280)
|.+.|..... ..++. +....+ ..+.. +-.+....+|.++... ...|||||.||.+|-+++.++ +.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~------~~ 281 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPA------SI 281 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCc------ce
Confidence 9998753211 11111 111111 00111 1122233455555543 459999999999999999998 55
Q ss_pred hhhccccCCCCceEEEeehhhh
Q psy850 205 LVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 205 l~ldep~~~l~~illlDE~~~~ 226 (280)
+..||++.++|..--++-+..+
T Consensus 282 ~~~De~t~GLDSsTal~iik~l 303 (1391)
T KOG0065|consen 282 LFWDEITRGLDSSTAFQIIKAL 303 (1391)
T ss_pred eeeecccccccHHHHHHHHHHH
Confidence 6777777777776555554443
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.24 E-value=2.8e-12 Score=112.98 Aligned_cols=69 Identities=22% Similarity=0.131 Sum_probs=47.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCceEEECCeEEEEecCCCC-CCCcHHHHHHhCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKLSREGTCAYVSQEAWI-TNDTLRHNILFGE 140 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-~~G~I~i~G~ig~v~Q~~~l-~~~Tv~enI~~g~ 140 (280)
+.+++|++|+. |++++|+||||||||||+|+|+|.... ..|.- +.. ..+++|...+ +..|+.||+.++.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~-v~a-~~~~~q~~~l~~~~~~~d~l~~~~ 84 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAP-VCA-SSFELPPVKIFTSIRVSDDLRDGI 84 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCE-Eec-CccCcccceEEEeccchhcccccc
Confidence 45778776655 799999999999999999999886531 12221 111 2356664333 3679999998765
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=1.9e-12 Score=116.01 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=68.8
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEE-EEecCCCCCCCcHHHHHHhCCCCChhh
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA-YVSQEAWITNDTLRHNILFGEPFEPQR 146 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig-~v~Q~~~l~~~Tv~enI~~g~~~~~~~ 146 (280)
..+.+|+++++++++++.|.||||+||||++++|+= +.+-.++| |||.+.... .+.+.+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------~~~la~~g~~vpa~~~~~--~~~~~i---------- 76 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------IVLMAQIGCFVPCDSADI--PIVDCI---------- 76 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------HHHHHHhCCCcCcccEEE--ecccee----------
Confidence 467899999999999999999999999999999871 11111222 333321100 000100
Q ss_pred HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHH--hcCCchhhhhhhhhhccc---cCCCCce
Q psy850 147 YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL--YSNSFEQQTFHFLVLLCP---CVSLQSI 217 (280)
Q Consensus 147 ~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL--~~~p~i~~~~~ll~ldep---~~~l~~i 217 (280)
+..+ +... .....+|.|++|++.+|+++ +.+| +++++||| |+++|..
T Consensus 77 -------------l~~~--~l~d---~~~~~lS~~~~e~~~~a~il~~~~~~------sLvLLDEp~~gT~~lD~~ 128 (222)
T cd03285 77 -------------LARV--GASD---SQLKGVSTFMAEMLETAAILKSATEN------SLIIIDELGRGTSTYDGF 128 (222)
T ss_pred -------------Eeee--cccc---chhcCcChHHHHHHHHHHHHHhCCCC------eEEEEecCcCCCChHHHH
Confidence 0000 0000 01235999999999999999 7666 89999999 6667764
No 408
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.23 E-value=3.4e-12 Score=113.07 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=71.0
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEE-EEecCCCCCCCcHHHHHHhCCCCChh
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA-YVSQEAWITNDTLRHNILFGEPFEPQ 145 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig-~v~Q~~~l~~~Tv~enI~~g~~~~~~ 145 (280)
+..+.+|++|++++|++++|+||||+||||++++|+++. +-.++| ++|-. ....++.++|....
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------~la~~G~~vpa~--~~~l~~~d~I~~~~----- 79 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------IMAQIGCFVPAE--YATLPIFNRLLSRL----- 79 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------HHHHcCCCcchh--hcCccChhheeEec-----
Confidence 356899999999999999999999999999999998764 111222 12111 11224445443210
Q ss_pred hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 146 RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 146 ~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+....+.+....+|+|++|+. .+.+++.+| +++++|||+.+.++.
T Consensus 80 --------------------~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~------~lvllDE~~~gt~~~ 124 (204)
T cd03282 80 --------------------SNDDSMERNLSTFASEMSETA-YILDYADGD------SLVLIDELGRGTSSA 124 (204)
T ss_pred --------------------CCccccchhhhHHHHHHHHHH-HHHHhcCCC------cEEEeccccCCCCHH
Confidence 001112233456999999764 445566666 899999998888653
No 409
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=2.5e-11 Score=111.68 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=28.1
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~ 102 (280)
.++++.+++.+| +++|+|||||||||+|.+|.
T Consensus 11 ~~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~ 42 (276)
T cd03241 11 LIEELELDFEEG-LTVLTGETGAGKSILLDALS 42 (276)
T ss_pred ceeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 467888888776 99999999999999999975
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.17 E-value=5e-12 Score=110.89 Aligned_cols=32 Identities=28% Similarity=0.240 Sum_probs=28.0
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
..++++.+|++++|+|||||||||||++|++.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 45667778999999999999999999999943
No 411
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=1.1e-10 Score=107.24 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=27.6
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.+++.++++.+| +++|+|||||||||++.+|.-+
T Consensus 11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~ 44 (270)
T cd03242 11 NYAELELEFEPG-VTVLVGENAQGKTNLLEAISLL 44 (270)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHh
Confidence 355677787775 7999999999999999998543
No 412
>KOG0063|consensus
Probab=99.14 E-value=1.8e-10 Score=111.29 Aligned_cols=122 Identities=22% Similarity=0.283 Sum_probs=80.1
Q ss_pred cccceeeeeeEEeeCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCc-eEEECCeEEEEecCCC-CCCCcHHHHHHh
Q psy850 66 ERNIALVDINFFAPKG-----KLVGICGAVGSGKSALLYAILSQLRSTAG-KLSREGTCAYVSQEAW-ITNDTLRHNILF 138 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~G-----eivaIiGpnGsGKSTLLk~I~Gl~~p~~G-~I~i~G~ig~v~Q~~~-l~~~Tv~enI~~ 138 (280)
..+..+.+..|.|+.| |++..+|.||-|||||+++++|.++|+.| +|-.- .++|=||... -+..||+..+.-
T Consensus 347 ~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~l-nVSykpqkispK~~~tvR~ll~~ 425 (592)
T KOG0063|consen 347 KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVL-NVSYKPQKISPKREGTVRQLLHT 425 (592)
T ss_pred cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccccc-ceeccccccCccccchHHHHHHH
Confidence 3444567788888877 67899999999999999999999999876 33222 4788888743 346688876531
Q ss_pred CC--CC-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchh
Q psy850 139 GE--PF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQ 199 (280)
Q Consensus 139 g~--~~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~ 199 (280)
-. .+ +..-.....+ |......+++...+||||++|||+||.+|=..+|+|
T Consensus 426 kIr~ay~~pqF~~dvmk-----------pL~ie~i~dqevq~lSggelQRval~KOGGKpAdvY 478 (592)
T KOG0063|consen 426 KIRDAYMHPQFVNDVMK-----------PLQIENIIDQEVQGLSGGELQRVALALCLGKPADVY 478 (592)
T ss_pred HhHhhhcCHHHHHhhhh-----------hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceE
Confidence 10 00 1110111111 111222344455679999999999999998887544
No 413
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.99 E-value=3.8e-10 Score=111.00 Aligned_cols=47 Identities=30% Similarity=0.454 Sum_probs=43.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc-eEEECCe
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG-KLSREGT 117 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G-~I~i~G~ 117 (280)
.+|++|||++++||+++|+|||||||||||+ .|+..|++| +|.++|+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~ 67 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDAT 67 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCE
Confidence 4799999999999999999999999999999 788888888 7999984
No 414
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.98 E-value=2.1e-09 Score=98.15 Aligned_cols=122 Identities=18% Similarity=0.131 Sum_probs=71.1
Q ss_pred eeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHH----HhC-CCCCh-hhH
Q psy850 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNI----LFG-EPFEP-QRY 147 (280)
Q Consensus 74 Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI----~~g-~~~~~-~~~ 147 (280)
.=+.+.+|+.++|+||+|+|||||++.|++.+....+++.. +.++.+++..--..+.+.+ ... ..... .++
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~---~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~ 85 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYL---IVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHV 85 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEE---EEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHH
Confidence 33588999999999999999999999999988765443321 2343444322111112222 000 00000 000
Q ss_pred ------HHHHH---H-----hhhhhhHhhCCCCCchhhccCCCCCCHHH--------HHHHHHHHHHhcCCch
Q psy850 148 ------YKTLY---N-----CALNTDIHILPGGDQTEIGERGINLSGGQ--------KQRVALARALYSNSFE 198 (280)
Q Consensus 148 ------~~~~~---~-----~~l~~~l~~l~~g~~~~i~~~~~~LSGGQ--------rQRV~LARAL~~~p~i 198 (280)
..... . ...-..+..++....+.....+..+|||+ +||+++||++..++.|
T Consensus 86 ~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsI 158 (249)
T cd01128 86 QVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSL 158 (249)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCce
Confidence 00000 0 00112234455555566667788899999 9999999998888733
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.96 E-value=7.4e-10 Score=98.80 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=32.4
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
..+.+|++|++.+ ++++|+|||||||||+||+|++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHH
Confidence 4578999999987 99999999999999999999764
No 416
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.96 E-value=1.4e-09 Score=120.49 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=36.0
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 170 EIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 170 ~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.++++..+|||||.||+-||.-|..++ ..+.+.||||||.+|..
T Consensus 1692 ~LGq~~~tLSGGE~qRikLa~~l~~~~---~~~~lyilDEPt~GLh~ 1735 (1809)
T PRK00635 1692 PLGQNLSSLSLSEKIAIKIAKFLYLPP---KHPTLFLLDEIATSLDN 1735 (1809)
T ss_pred eCCCcCCccCchHHHHHHHHHHHhcCC---CCCcEEEEcCCCCCCCH
Confidence 357777889999999999999998752 12478899999999954
No 417
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.95 E-value=1.4e-09 Score=111.51 Aligned_cols=42 Identities=36% Similarity=0.521 Sum_probs=35.4
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 170 EIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 170 ~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
.++++..+|||||.|||-||.-|..+. .+.-+-||||||.+|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~---tg~TlYiLDEPTTGL 856 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRS---TGKTLYILDEPTTGL 856 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhcc---CCCeEEEeCCCCCCC
Confidence 356777889999999999999998875 334677999999998
No 418
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.93 E-value=2.2e-09 Score=95.52 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=63.5
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHH--cCCCCCCceEEEC--CeEEEEecCCCCC--CCcHHHHHHhCCCCC
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAIL--SQLRSTAGKLSRE--GTCAYVSQEAWIT--NDTLRHNILFGEPFE 143 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~--Gl~~p~~G~I~i~--G~ig~v~Q~~~l~--~~Tv~enI~~g~~~~ 143 (280)
+-.|+.+.=..+.+++|+||||+|||||||.|. ..+ +..|.+... -+++|..|..... ..++.+++-
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S------ 90 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQS------ 90 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccc------
Confidence 444555432223799999999999999999998 333 455655443 2456666642111 112222110
Q ss_pred hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 144 PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 144 ~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.+ --+.||+++|++++.++ +++++|||+.+.+.
T Consensus 91 ---------------------------------~f-~~el~~l~~~l~~~~~~------slvllDE~~~gtd~ 123 (213)
T cd03281 91 ---------------------------------AF-MIDLYQVSKALRLATRR------SLVLIDEFGKGTDT 123 (213)
T ss_pred ---------------------------------hH-HHHHHHHHHHHHhCCCC------cEEEeccccCCCCH
Confidence 00 23458899999999887 88999999998875
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.88 E-value=8e-10 Score=115.07 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=66.3
Q ss_pred eeEEeeCC-cEEEEECCCCCcHHHHHHHHHcC-CCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHHHH
Q psy850 74 INFFAPKG-KLVGICGAVGSGKSALLYAILSQ-LRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTL 151 (280)
Q Consensus 74 Isl~i~~G-eivaIiGpnGsGKSTLLk~I~Gl-~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~ 151 (280)
+++.+.++ ++++|+||||+|||||||+|++. +.+..|- +||..... ...+.+++... .
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------~Vpa~~~~-~~~~~d~i~~~--i--------- 373 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------PIPANEHS-EIPYFEEIFAD--I--------- 373 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC--------CccCCccc-cccchhheeee--c---------
Confidence 68888877 99999999999999999999987 3444441 33332210 00111111100 0
Q ss_pred HHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 152 YNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 152 ~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
++...+.+...+||+||+|++.|++++ .+| +++|+|||+++.|+
T Consensus 374 --------------~~~~si~~~LStfS~~m~~~~~il~~~-~~~------sLvLlDE~g~GtD~ 417 (771)
T TIGR01069 374 --------------GDEQSIEQNLSTFSGHMKNISAILSKT-TEN------SLVLFDELGAGTDP 417 (771)
T ss_pred --------------ChHhHHhhhhhHHHHHHHHHHHHHHhc-CCC------cEEEecCCCCCCCH
Confidence 001112233457999999999999877 444 88999999999876
No 420
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.84 E-value=4e-09 Score=97.37 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=34.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeE
Q psy850 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC 118 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~i 118 (280)
.-++|+||||||||||+++|+|++.|.+|+|.++|+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~ 148 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKK 148 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEE
Confidence 5789999999999999999999999999999999853
No 421
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.76 E-value=3.4e-09 Score=93.17 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCchhhhhhhhhhcccc-----CCCCceEE
Q psy850 182 QKQRVALARALYSNSFEQQTFHFLVLLCPC-----VSLQSILL 219 (280)
Q Consensus 182 QrQRV~LARAL~~~p~i~~~~~ll~ldep~-----~~l~~ill 219 (280)
|++++.|||+++.+| +++++|||+ .++|+...
T Consensus 157 ~~~f~~ia~~l~~~p------~~~~ldEp~~~~~~~~ld~~~~ 193 (215)
T PTZ00132 157 EKPFLWLARRLTNDP------NLVFVGAPALAPEEIQIDPELV 193 (215)
T ss_pred HHHHHHHHHHHhhcc------cceecCCcccCCCccccCHHHH
Confidence 999999999999998 888999999 88887543
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.71 E-value=2.8e-09 Score=92.55 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy850 83 LVGICGAVGSGKSALLYAIL 102 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~ 102 (280)
++.|+||||+||||+||.++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 36899999999999999997
No 423
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.70 E-value=1.9e-08 Score=90.42 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=42.6
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHc-CCCCCCceEEEC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILS-QLRSTAGKLSRE 115 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~G-l~~p~~G~I~i~ 115 (280)
..+.+|++|.+.+|++++|+||||+||||++++|++ .+.+..|.....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 467899999999999999999999999999999999 677778876544
No 424
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.70 E-value=2.5e-08 Score=86.54 Aligned_cols=67 Identities=22% Similarity=0.223 Sum_probs=51.4
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------EEEEecCCC---CCCCcHHHHHHhC
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------CAYVSQEAW---ITNDTLRHNILFG 139 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------ig~v~Q~~~---l~~~Tv~enI~~g 139 (280)
=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+. +++++|... ....+..+.+...
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHH
Confidence 355678999999999999999999999999999999999987652 455555432 2245777777543
No 425
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.69 E-value=8.3e-09 Score=91.03 Aligned_cols=29 Identities=38% Similarity=0.397 Sum_probs=24.5
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHH
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAI 101 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I 101 (280)
+...+.+.+ .+++|+||||+||||++.+|
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi 44 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAI 44 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHH
Confidence 455666654 59999999999999999999
No 426
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.61 E-value=2.5e-07 Score=90.64 Aligned_cols=118 Identities=16% Similarity=0.113 Sum_probs=74.9
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhh
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQR 146 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~ 146 (280)
+..+++.+ |.+.+|+.++|+|++|+|||||+++|++..+++.|.|.+.|.-+ .++.+.+..
T Consensus 143 GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg----------~ev~e~~~~-------- 203 (432)
T PRK06793 143 GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG----------REVKDFIRK-------- 203 (432)
T ss_pred CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc----------ccHHHHHHH--------
Confidence 34577774 99999999999999999999999999999999888665443222 255555421
Q ss_pred HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchh-hhhhhhhhccccCCCCc
Q psy850 147 YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQ-QTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 147 ~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~-~~~~ll~ldep~~~l~~ 216 (280)
.+....+. .+.+-....+.|.|+|+|++.+.+.+.+-=.. -.+.++++|++|...+.
T Consensus 204 ---~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A 261 (432)
T PRK06793 204 ---ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADA 261 (432)
T ss_pred ---Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHH
Confidence 00000000 01111234568999999999988876310000 01255666777766665
No 427
>KOG0063|consensus
Probab=98.60 E-value=9.5e-09 Score=99.54 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=32.0
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I 112 (280)
.++|++.+++|.||-||||-+++++|-++|.-|..
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~ 131 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY 131 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCC
Confidence 36899999999999999999999999999987754
No 428
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.52 E-value=1.6e-07 Score=92.10 Aligned_cols=71 Identities=18% Similarity=0.129 Sum_probs=55.4
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE---EECC-------------------eEEEEecC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL---SREG-------------------TCAYVSQE 124 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I---~i~G-------------------~ig~v~Q~ 124 (280)
+..+++++ |+|.+|++++|+|+||||||||+++|+|+.+++.+.+ -.++ .+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45689999 9999999999999999999999999999998875322 2211 26788888
Q ss_pred CCCC-CCcHHHHHHh
Q psy850 125 AWIT-NDTLRHNILF 138 (280)
Q Consensus 125 ~~l~-~~Tv~enI~~ 138 (280)
...+ ..++.++...
T Consensus 221 ~s~~~rl~a~e~a~~ 235 (434)
T PRK07196 221 ESPLMRIKATELCHA 235 (434)
T ss_pred CChhhhHHHHHHHHH
Confidence 5443 5677777653
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.51 E-value=1.4e-07 Score=98.63 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=62.6
Q ss_pred eeEEee-CCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEE-EEecCCCCCCCcHHHHHHhCCCCChhhHHHHH
Q psy850 74 INFFAP-KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA-YVSQEAWITNDTLRHNILFGEPFEPQRYYKTL 151 (280)
Q Consensus 74 Isl~i~-~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig-~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~ 151 (280)
.++.+. .+.++.|.|||++||||+||++.... +-.++| |||-... ....+.++|..
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~--------~maq~G~~vpa~~~-~~i~~~~~i~~------------- 376 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAA--------LMAKSGLPIPANEP-SEIPVFKEIFA------------- 376 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHH--------HHHHhCCCcccCCC-ccccccceEEE-------------
Confidence 455554 45789999999999999999985321 001111 2222100 00111122210
Q ss_pred HHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 152 YNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 152 ~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
. .++...+.....++|+||+|++.|++++ .+| +++++|||+.+.++.
T Consensus 377 -------~-----ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~------sLvLlDE~~~GtDp~ 423 (782)
T PRK00409 377 -------D-----IGDEQSIEQSLSTFSGHMTNIVRILEKA-DKN------SLVLFDELGAGTDPD 423 (782)
T ss_pred -------e-----cCCccchhhchhHHHHHHHHHHHHHHhC-CcC------cEEEecCCCCCCCHH
Confidence 0 0222233445667999999999999998 454 889999999999863
No 430
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.46 E-value=4.1e-07 Score=89.40 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=43.5
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
+..+++.++ +|.+|++++|+||||||||||+++|+++.+|+.|.|.+.
T Consensus 152 Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~li 199 (450)
T PRK06002 152 GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALV 199 (450)
T ss_pred CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeec
Confidence 456788885 999999999999999999999999999999999988764
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.37 E-value=1.4e-07 Score=93.52 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=51.1
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHh
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILF 138 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~ 138 (280)
++++.++.+.+|++++++||||+||||++..|++.+....|.. +++++.+++ +..++.|++.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~----kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS----KVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC----eEEEEeCCc--cchhHHHHHHH
Confidence 4566777788999999999999999999999999887776642 567888886 44577888764
No 432
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.37 E-value=3e-06 Score=66.32 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=26.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRSTA 109 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~ 109 (280)
++..+.|+||+|+||||+++.|+..+....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 367899999999999999999999887654
No 433
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=4.6e-07 Score=96.10 Aligned_cols=42 Identities=33% Similarity=0.396 Sum_probs=36.7
Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 171 IGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 171 i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+++...+|||||+|||.|||||+.+| .++++|||||++++|+
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~----~~~llILDEPtagLD~ 522 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGL----TGVLYVLDEPSIGLHQ 522 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCC----CCcEEEEcCCccCCCH
Confidence 46778899999999999999999986 2478999999999963
No 434
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.32 E-value=4.6e-07 Score=96.29 Aligned_cols=42 Identities=33% Similarity=0.399 Sum_probs=36.7
Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 171 IGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 171 i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
++++..+|||||+|||.|||||+.+| .++++|||||+++|++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~----~~~llILDEPtagLd~ 524 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGL----TGVLYVLDEPSIGLHQ 524 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCC----CCcEEEecCCccCCCH
Confidence 46778899999999999999999986 2478999999999953
No 435
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.30 E-value=5.4e-07 Score=79.30 Aligned_cols=41 Identities=37% Similarity=0.591 Sum_probs=33.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l 127 (280)
++|++++|+||||||||||+++|++++++ +.+++++|+.++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--------~~~~~i~~D~~~ 44 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--------LEIVIISQDNYY 44 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--------cCCeEecccccc
Confidence 68999999999999999999999998865 245666676544
No 436
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.29 E-value=7.1e-07 Score=98.09 Aligned_cols=81 Identities=20% Similarity=0.114 Sum_probs=55.5
Q ss_pred CCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHH------HHHHHHHHhcCCchhh
Q psy850 127 ITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQ------RVALARALYSNSFEQQ 200 (280)
Q Consensus 127 l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQ------RV~LARAL~~~p~i~~ 200 (280)
.|.+|+.+||.+ .+..... ............+..++.+ .+.++.+ ..||||||| |++||||++.+|
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~lS~Gq~~~~~~~~rlala~~~~~~~---- 1224 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN-VSASDKRRNYNYRVVMLKG-DTALDMR-GRCSAGQKVLASLIIRLALAETFCLNC---- 1224 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH-HHHHHHcCchHHHhccCCC-CeecCCC-CCCchhhhhHhhHhHHHHHHHHHhcCC----
Confidence 467899999998 4322222 2222222233334445555 4444444 589999999 999999999998
Q ss_pred hhhhhhhccccCCCCce
Q psy850 201 TFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~i 217 (280)
++|+|||||+++|.-
T Consensus 1225 --~il~lDEPt~~lD~~ 1239 (1311)
T TIGR00606 1225 --GIIALDEPTTNLDRE 1239 (1311)
T ss_pred --CEEEeeCCcccCCHH
Confidence 778999999999864
No 437
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.28 E-value=8.4e-07 Score=87.22 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=44.9
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+++.|.|.+.|
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~G 193 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIG 193 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEe
Confidence 45689999 99999999999999999999999999999999999887743
No 438
>PRK01889 GTPase RsgA; Reviewed
Probab=98.25 E-value=1.2e-06 Score=83.78 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=54.7
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------eEEEEecCCCCCCCcHHHHHHhC
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------TCAYVSQEAWITNDTLRHNILFG 139 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------~ig~v~Q~~~l~~~Tv~enI~~g 139 (280)
+.+.-.+++|++++|+|+||+|||||+++|+|...+..|+|.+++ ++.+++|...+++.....++.+.
T Consensus 186 ~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~ 263 (356)
T PRK01889 186 DVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLW 263 (356)
T ss_pred HHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhccc
Confidence 334445778999999999999999999999999999999998864 36788888777765555555543
No 439
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.24 E-value=1.6e-06 Score=82.27 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=43.1
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+..++.|.+..-
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~i 103 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALI 103 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEE
Confidence 45689999 9999999999999999999999999999999988766543
No 440
>PRK08149 ATP synthase SpaL; Validated
Probab=98.22 E-value=2e-06 Score=84.26 Aligned_cols=49 Identities=20% Similarity=0.416 Sum_probs=43.2
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC---ceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTA---GKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~---G~I~i~G 116 (280)
+..+++++ +++.+||+++|+|+||+|||||+++|++...++. |.|..+|
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg 189 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERG 189 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCC
Confidence 45689999 9999999999999999999999999999988875 6665554
No 441
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.21 E-value=1.6e-06 Score=62.93 Aligned_cols=38 Identities=34% Similarity=0.327 Sum_probs=29.9
Q ss_pred eeeeeEEeeC-CcEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 71 LVDINFFAPK-GKLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 71 L~~Isl~i~~-GeivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
+++..+++.+ |.++.|+|||||||||+|.+|.=.+-+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4456677775 5799999999999999999987655443
No 442
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.17 E-value=2.1e-06 Score=76.85 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=31.8
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I 112 (280)
-.+..+++|+||||||||||+++|++++++..|.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 35578999999999999999999999999999984
No 443
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.17 E-value=3.3e-06 Score=82.72 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=44.2
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
+..+++++ |.+.+|++++|+|+||+|||||+++|++...++.|.+...
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~i 179 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALI 179 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEE
Confidence 45689999 9999999999999999999999999999999998888663
No 444
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.17 E-value=2.3e-06 Score=74.40 Aligned_cols=23 Identities=43% Similarity=0.803 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++|+||+|||||||.++|.+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 445
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.16 E-value=2.2e-06 Score=84.04 Aligned_cols=50 Identities=28% Similarity=0.292 Sum_probs=45.2
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
.+..+++++ |++.+|++++|+|+||+|||||+++|++..+++.|.+.+.|
T Consensus 141 tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iG 190 (433)
T PRK07594 141 TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG 190 (433)
T ss_pred CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEEC
Confidence 356789999 99999999999999999999999999999999988776655
No 446
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.14 E-value=2.3e-06 Score=74.01 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=29.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
+|++++|+||||||||||+++|++++.+ +.++|
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~g 34 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDG 34 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECC
Confidence 5899999999999999999999999876 45665
No 447
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.13 E-value=1.9e-06 Score=75.02 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=26.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999875
No 448
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.13 E-value=4e-06 Score=75.52 Aligned_cols=31 Identities=32% Similarity=0.344 Sum_probs=27.6
Q ss_pred EeeCCcEEEEECCCCCcHHHH-HHHHHcCCCC
Q psy850 77 FAPKGKLVGICGAVGSGKSAL-LYAILSQLRS 107 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTL-Lk~I~Gl~~p 107 (280)
-+++|+++.|+||+||||||| ++.+.+..++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~ 51 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN 51 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 489999999999999999999 6888887654
No 449
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.13 E-value=3.3e-06 Score=83.03 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=45.0
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
+..+++++ |++.+|++++|+|+||+|||||+++|++...++.|.|.+.|
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iG 198 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIG 198 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEc
Confidence 45689999 99999999999999999999999999999999988887665
No 450
>PRK13695 putative NTPase; Provisional
Probab=98.12 E-value=7.1e-07 Score=76.28 Aligned_cols=104 Identities=14% Similarity=0.196 Sum_probs=57.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhh
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHI 162 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~ 162 (280)
.++|+|++|||||||++.|++.+.+ .| +.+ .+|+.|+........ +. ....... .....+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~---~g~~~~~~~~~~~~~------~~--~~~~~~~-----~~~~~l~~ 63 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKV---GGFYTEEVREGGKRI------GF--KIIDLDT-----GEEGILAR 63 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeE---EEEEcHHHHhcCCcc------ce--EEEEcCC-----CCeEEccc
Confidence 5789999999999999999887765 45 222 456655321100000 00 0000000 00000000
Q ss_pred CCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 163 LPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 163 l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
..........++...+||+++-++.+++..+.+| +++++|||
T Consensus 64 ~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~------~~lllDE~ 105 (174)
T PRK13695 64 VGFPSRPRVGKYVVNLEDLERIGIPALERALEEA------DVIIIDEI 105 (174)
T ss_pred cCCCCCCceeeEEEehHHHHHHHHHHHHhccCCC------CEEEEECC
Confidence 0000111123344569999999999999888877 66788884
No 451
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.11 E-value=5.6e-06 Score=81.45 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=39.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCceEEE
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKLSR 114 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-~~G~I~i 114 (280)
..+++++ |++.+|+.++|+|+||||||||+++|+|+.++ +.|.|.+
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~l 198 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIAL 198 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEE
Confidence 4578887 99999999999999999999999999999854 3455655
No 452
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.10 E-value=2.1e-06 Score=80.49 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=37.4
Q ss_pred eeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 74 Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
+++.++.|+.++|+||+|||||||+++|++++++..|.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 456788999999999999999999999999999988876654
No 453
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.09 E-value=4.1e-06 Score=72.47 Aligned_cols=27 Identities=41% Similarity=0.637 Sum_probs=25.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
|++++|+||||||||||+++|++...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 789999999999999999999998765
No 454
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.08 E-value=6.4e-06 Score=80.03 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=33.3
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
|+.+.|.+|+.++|+||+|||||||++.|+..+...
T Consensus 160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 899999999999999999999999999999987543
No 455
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.06 E-value=4.1e-06 Score=82.42 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=42.8
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
+..+++++ |.+.+|++++|+|+||+|||||+++|++..+++.|.+...
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~i 197 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALI 197 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEE
Confidence 45689988 9999999999999999999999999999999987766543
No 456
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.06 E-value=6.3e-06 Score=80.51 Aligned_cols=49 Identities=29% Similarity=0.341 Sum_probs=44.2
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
+..+++++ |.+.+|++++|+|++|+|||||+++|++..+++.|.|.+.|
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~G 172 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIG 172 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEc
Confidence 45689999 99999999999999999999999999999999888776554
No 457
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.05 E-value=4.2e-06 Score=81.80 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=42.6
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
..+++ .+|++.+|++++|+|+||+|||||+++|+++.+|+.|.|.+.|
T Consensus 128 i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iG 175 (418)
T TIGR03498 128 VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVG 175 (418)
T ss_pred cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEe
Confidence 34564 7999999999999999999999999999999999998876655
No 458
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.04 E-value=1.3e-05 Score=65.56 Aligned_cols=36 Identities=33% Similarity=0.584 Sum_probs=28.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~ 124 (280)
++.|+||+|+||||+++.+++...+..+. +.|+..+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~------v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGK------VVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCE------EEEEECC
Confidence 47899999999999999999988764443 4555554
No 459
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.02 E-value=7.7e-06 Score=80.55 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=40.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC---ceEEECC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTA---GKLSREG 116 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~---G~I~i~G 116 (280)
.+++.+ |++.+|++++|+|+||+|||||+++|+++.+++. |.|-+.|
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg 213 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERG 213 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECC
Confidence 355444 9999999999999999999999999999999875 7776665
No 460
>PRK05922 type III secretion system ATPase; Validated
Probab=98.00 E-value=9.4e-06 Score=79.67 Aligned_cols=49 Identities=31% Similarity=0.363 Sum_probs=42.6
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
+..+++.+ +.+.+|+.++|+|+||+|||||+++|++..+++.|.+...|
T Consensus 144 GIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liG 192 (434)
T PRK05922 144 GIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIG 192 (434)
T ss_pred Cceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeC
Confidence 34467665 99999999999999999999999999999999988886544
No 461
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.99 E-value=8.1e-06 Score=80.45 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=37.8
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+..++
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45689999 999999999999999999999999999998765
No 462
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.98 E-value=1e-05 Score=79.08 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=42.4
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
+..+++.+ |++.+|++++|+|+||+|||||+++|++..+++.+.+...|
T Consensus 124 Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iG 172 (411)
T TIGR03496 124 GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIG 172 (411)
T ss_pred eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEe
Confidence 45678888 99999999999999999999999999999999876654433
No 463
>PLN02796 D-glycerate 3-kinase
Probab=97.97 E-value=2.4e-06 Score=81.45 Aligned_cols=48 Identities=25% Similarity=0.421 Sum_probs=39.0
Q ss_pred ceeeeeeEEe---eCCcE-----EEEECCCCCcHHHHHHHHHcCCCCC---CceEEECC
Q psy850 69 IALVDINFFA---PKGKL-----VGICGAVGSGKSALLYAILSQLRST---AGKLSREG 116 (280)
Q Consensus 69 ~vL~~Isl~i---~~Gei-----vaIiGpnGsGKSTLLk~I~Gl~~p~---~G~I~i~G 116 (280)
.+++.+++.+ ++|+. ++|+|++|||||||++.|.+++.+. .|.|.+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 4677888887 67776 9999999999999999999999875 35555554
No 464
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.95 E-value=6.8e-06 Score=82.15 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=46.1
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
...+++++++.+..|+.+.|+||||||||||++.|.|+++|.+|++.+..
T Consensus 196 q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~ 245 (506)
T PRK09862 196 QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES 245 (506)
T ss_pred cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec
Confidence 34578899999999999999999999999999999999999999988765
No 465
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.93 E-value=5.5e-06 Score=77.42 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=29.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC--CCCceEEE
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLR--STAGKLSR 114 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~--p~~G~I~i 114 (280)
.-.++||.||||||||||+++|.+++. |.+|.|.+
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~v 97 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVEL 97 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEE
Confidence 346999999999999999999999987 66676544
No 466
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.92 E-value=9.4e-06 Score=69.15 Aligned_cols=32 Identities=41% Similarity=0.488 Sum_probs=26.2
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~ 102 (280)
.++++.+++.+| +++|+||||+||||++.+|.
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~ 40 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIR 40 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHH
Confidence 357888888776 99999999999999999874
No 467
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.90 E-value=1.2e-05 Score=68.66 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=26.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCceEE
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLRSTAGKLS 113 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~ 113 (280)
|++++|+||||||||||++.|++.+.+. |.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~ 32 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVH 32 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEE
Confidence 6789999999999999999999987653 4443
No 468
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.89 E-value=1.6e-05 Score=69.74 Aligned_cols=42 Identities=29% Similarity=0.540 Sum_probs=34.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~ 128 (280)
.++.+++|+|++|||||||.+.|++.+. .+.+.+++|+.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--------~~~~~~i~~D~~~~ 45 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--------DESIAVIPQDSYYK 45 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--------CCceEEEeCCcccc
Confidence 4678999999999999999999999872 23577888876554
No 469
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.88 E-value=1.2e-05 Score=78.91 Aligned_cols=49 Identities=22% Similarity=0.286 Sum_probs=42.9
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
+..+++++ +++.+|++++|+|+||+|||||+++|++...++.+.|...|
T Consensus 144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iG 192 (434)
T PRK08472 144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIG 192 (434)
T ss_pred hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeC
Confidence 34578999 99999999999999999999999999999888777776554
No 470
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.86 E-value=1.6e-05 Score=78.17 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=36.3
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
+..+++.+ |.+.+|++++|+|+||+|||||+++|++...++
T Consensus 149 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 149 GVRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred cceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 34577777 999999999999999999999999999987764
No 471
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.84 E-value=1.3e-05 Score=68.48 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=29.5
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHc
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
+|+++++..+++++ +|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 47788888888777 9999999999999999987
No 472
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.82 E-value=1.6e-05 Score=67.68 Aligned_cols=26 Identities=42% Similarity=0.595 Sum_probs=24.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
|++++|+||||||||||++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 473
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.81 E-value=3.3e-05 Score=71.76 Aligned_cols=40 Identities=33% Similarity=0.542 Sum_probs=34.0
Q ss_pred eeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy850 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114 (280)
Q Consensus 74 Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i 114 (280)
+...+. +++++++|+||+|||||++.|+|...+..|+|..
T Consensus 155 L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 155 LREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred HHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 333444 5899999999999999999999999999998864
No 474
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.81 E-value=2e-05 Score=79.95 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=43.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------EEEEecCCCCCC-CcHHHHHH
Q psy850 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------CAYVSQEAWITN-DTLRHNIL 137 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------ig~v~Q~~~l~~-~Tv~enI~ 137 (280)
-+++|.||||||||||++.|++++ |..|.|.+++. +.+.+|+|..++ .++.+++.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~ 127 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIH 127 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHH
Confidence 589999999999999999999997 56788988873 456677765553 46777763
No 475
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.80 E-value=2.7e-05 Score=76.57 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=38.2
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
+..+++++ |++.+|++++|+|+||+|||||+++|++...++
T Consensus 149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~d 189 (439)
T PRK06936 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD 189 (439)
T ss_pred Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCC
Confidence 45689999 999999999999999999999999999999875
No 476
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.78 E-value=3e-05 Score=85.94 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=39.6
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
+.+..|+|.+| +++|+|+|||||||+|++|++++.|..|.+.+++
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~ 62 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECC
Confidence 45668888876 9999999999999999999999999999887764
No 477
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.78 E-value=1.3e-05 Score=71.74 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=30.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l 127 (280)
++||.||||||||||++.|++.+.+..+ .+.+.+++++.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~----~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPD----HPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCC----CCcEEEEecCccc
Confidence 5899999999999999999999875221 1345566666544
No 478
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.77 E-value=1.1e-05 Score=80.82 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCch----hhhhhhhhhcccc-CCCCceEEEeehhhhhc
Q psy850 176 INLSGGQKQRVALARALYSNSFE----QQTFHFLVLLCPC-VSLQSILLMEEVNVYVS 228 (280)
Q Consensus 176 ~~LSGGQrQRV~LARAL~~~p~i----~~~~~ll~ldep~-~~l~~illlDE~~~~~~ 228 (280)
.+||||||||++|||||+.+.=+ ...|+++++|||+ +++|..-.-.-.+++..
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~ 524 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDS 524 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHh
Confidence 57999999999999998821000 0124889999998 67877543333333333
No 479
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.76 E-value=1.8e-05 Score=69.85 Aligned_cols=29 Identities=41% Similarity=0.636 Sum_probs=25.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCce
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRSTAGK 111 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p~~G~ 111 (280)
.++|+||+|||||||++.+++.+.+..+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~ 31 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQL 31 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcE
Confidence 68999999999999999999998876553
No 480
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.75 E-value=2e-05 Score=74.49 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=33.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
++|++++++||||+||||++..|++.+.+..++|.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 5799999999999999999999999999887888754
No 481
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.74 E-value=2.4e-05 Score=72.33 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=28.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
+++|+|+||||||||+++|++++++..|.+...
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~ 33 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICL 33 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEEC
Confidence 589999999999999999999999887765443
No 482
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.74 E-value=4.2e-05 Score=63.96 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=28.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC----CCCCCc----eEEECC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ----LRSTAG----KLSREG 116 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl----~~p~~G----~I~i~G 116 (280)
-.++|+||+|||||||++.+.|. +.|+.| .+.++|
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~ 57 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDG 57 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECC
Confidence 45899999999999999999997 567777 555554
No 483
>PRK06820 type III secretion system ATPase; Validated
Probab=97.71 E-value=4.9e-05 Score=74.80 Aligned_cols=43 Identities=28% Similarity=0.320 Sum_probs=39.3
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG 110 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G 110 (280)
+..+++.+ +++.+||.++|+|+||+|||||+++|++...++.+
T Consensus 150 Gi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~ 192 (440)
T PRK06820 150 GIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVM 192 (440)
T ss_pred CCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEE
Confidence 45689999 99999999999999999999999999999887754
No 484
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=2.1e-05 Score=81.84 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=41.2
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCC
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEA 125 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~ 125 (280)
+++++++.+++|+++++|||||+||||++..|++.+....|. .+++++..+.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~----kkV~lit~Dt 225 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGA----DQLALLTTDS 225 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCC----CeEEEecCcc
Confidence 567788888899999999999999999999999988665552 1345555553
No 485
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.68 E-value=4.8e-05 Score=83.88 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=29.7
Q ss_pred cEEEEECCCCCcHHHHHHHH----HcCCCCC-CceEEEC
Q psy850 82 KLVGICGAVGSGKSALLYAI----LSQLRST-AGKLSRE 115 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I----~Gl~~p~-~G~I~i~ 115 (280)
.+++|+|||||||||++.+| .|..+|. .|.+.+.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~ 67 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVH 67 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEec
Confidence 49999999999999999999 5999986 6877664
No 486
>PRK00098 GTPase RsgA; Reviewed
Probab=97.67 E-value=4.6e-05 Score=71.21 Aligned_cols=35 Identities=37% Similarity=0.600 Sum_probs=32.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i 114 (280)
+|++++++|+||+|||||+++|+|...+..|.|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 58999999999999999999999999999998864
No 487
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.64 E-value=3.2e-05 Score=77.28 Aligned_cols=50 Identities=22% Similarity=0.221 Sum_probs=45.6
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
...+.+.+++.+..|+.+.++||+|+|||||+++|.++++|.+|.+.+..
T Consensus 197 q~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~ 246 (499)
T TIGR00368 197 QQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIET 246 (499)
T ss_pred cHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEec
Confidence 44578899999999999999999999999999999999999999987764
No 488
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.62 E-value=5.3e-05 Score=66.22 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=32.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CceEEECC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRST-AGKLSREG 116 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~-~G~I~i~G 116 (280)
++|++++|+|++|||||||.+.|.+.+.+. .|.+.++|
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~ 60 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 678999999999999999999999977554 45787776
No 489
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.60 E-value=7.6e-05 Score=66.96 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=34.3
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
...+-+|++|++++|+++.|+||||+||||++++++..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 34678999999999999999999999999999998754
No 490
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.58 E-value=3.2e-05 Score=65.89 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=28.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHH---cCCCCCCceEE
Q psy850 81 GKLVGICGAVGSGKSALLYAIL---SQLRSTAGKLS 113 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~---Gl~~p~~G~I~ 113 (280)
..+++|+||+||||||+++.|+ |+..++.|++.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~ 38 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLL 38 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHH
Confidence 4689999999999999999998 87777777653
No 491
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.57 E-value=8.2e-05 Score=74.55 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=38.8
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHH---cCCCCCCceEE
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAIL---SQLRSTAGKLS 113 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~---Gl~~p~~G~I~ 113 (280)
++...++|+-+.+ ++.+++|.||+||||||+.+.|+ |+...+.|.++
T Consensus 270 g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~Y 319 (512)
T PRK13477 270 GSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMY 319 (512)
T ss_pred CCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCcee
Confidence 4556789999988 88999999999999999999998 55555666553
No 492
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.57 E-value=7.4e-05 Score=64.19 Aligned_cols=35 Identities=37% Similarity=0.620 Sum_probs=25.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i 114 (280)
++++++++|++|+|||||++.|.+......|.|.-
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~ 68 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISE 68 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S----
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhc
Confidence 45999999999999999999999987766677643
No 493
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.56 E-value=0.00024 Score=60.46 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=16.1
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy850 84 VGICGAVGSGKSALLYAIL 102 (280)
Q Consensus 84 vaIiGpnGsGKSTLLk~I~ 102 (280)
+.|.||+|+|||||...++
T Consensus 2 ~li~G~~G~GKT~l~~~~~ 20 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFL 20 (187)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6799999999999886543
No 494
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.54 E-value=8.9e-05 Score=79.36 Aligned_cols=50 Identities=26% Similarity=0.398 Sum_probs=34.4
Q ss_pred eeEEeeCCcEEEEECCCCCcHHHHHHH---HHcCCCC------CCceEEECC----------eEEEEecC
Q psy850 74 INFFAPKGKLVGICGAVGSGKSALLYA---ILSQLRS------TAGKLSREG----------TCAYVSQE 124 (280)
Q Consensus 74 Isl~i~~GeivaIiGpnGsGKSTLLk~---I~Gl~~p------~~G~I~i~G----------~ig~v~Q~ 124 (280)
+.+.+.+| +++|+|||||||||||.+ ++|...+ ..+.+.+.| .+.+++++
T Consensus 17 ~~i~f~~~-~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v~~~~~~ 85 (1179)
T TIGR02168 17 TTINFDKG-ITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEVELVFDN 85 (1179)
T ss_pred eeEEecCC-cEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEEEEEEec
Confidence 45666655 999999999999999966 5676543 234554443 36667775
No 495
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.54 E-value=7.3e-05 Score=65.24 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=28.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
.++|+|++|+|||||+++|+|...+..|.+...
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~ 35 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTG 35 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence 379999999999999999999888887776554
No 496
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.53 E-value=8e-05 Score=71.55 Aligned_cols=29 Identities=52% Similarity=0.715 Sum_probs=26.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
+++.++.|+||+||||||+|++|++++.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999999998853
No 497
>PTZ00035 Rad51 protein; Provisional
Probab=97.52 E-value=3.7e-05 Score=73.26 Aligned_cols=70 Identities=13% Similarity=0.258 Sum_probs=46.7
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCC-C-----CCceE-EECCe-------EEEEecCCCCCCCcHHHHHHhCCCC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLR-S-----TAGKL-SREGT-------CAYVSQEAWITNDTLRHNILFGEPF 142 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-p-----~~G~I-~i~G~-------ig~v~Q~~~l~~~Tv~enI~~g~~~ 142 (280)
=|++|+++.|+||+|||||||+..++.... | ..|.+ +++.. +..++|...+...++.+||.+.+.+
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 478999999999999999999998876544 3 35555 44432 2233444334444777888776655
Q ss_pred Chhh
Q psy850 143 EPQR 146 (280)
Q Consensus 143 ~~~~ 146 (280)
..+.
T Consensus 194 ~~e~ 197 (337)
T PTZ00035 194 NHEH 197 (337)
T ss_pred CHHH
Confidence 5433
No 498
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.51 E-value=5e-05 Score=70.90 Aligned_cols=44 Identities=36% Similarity=0.414 Sum_probs=37.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I 112 (280)
.+|+++++...++++++|+||+|||||||++.+.+.+......+
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v 65 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKV 65 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 46899999999999999999999999999999998766543333
No 499
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.50 E-value=0.00012 Score=70.12 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=35.2
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
++.+..+.|+||+|||||||+++|++.+++..+.|.+..
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 567889999999999999999999999999888887764
No 500
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=7.1e-05 Score=73.33 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=25.5
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+.+|++++++||||+||||+++.|++.+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999998853
Done!