Query psy850
Match_columns 280
No_of_seqs 387 out of 3761
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 20:31:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nh6_A ATP-binding cassette SU 100.0 6.2E-39 2.1E-43 298.2 17.0 143 69-217 68-224 (306)
2 2pze_A Cystic fibrosis transme 100.0 1E-38 3.6E-43 284.3 17.1 143 69-217 22-164 (229)
3 2cbz_A Multidrug resistance-as 100.0 1.5E-38 5.1E-43 284.8 14.6 144 69-218 19-162 (237)
4 4f4c_A Multidrug resistance pr 100.0 1.3E-37 4.5E-42 335.3 18.3 161 15-216 413-587 (1321)
5 2ff7_A Alpha-hemolysin translo 100.0 4.3E-37 1.5E-41 277.1 17.3 143 69-217 23-179 (247)
6 1mv5_A LMRA, multidrug resista 100.0 3.8E-37 1.3E-41 276.3 14.1 152 69-226 16-182 (243)
7 2ixe_A Antigen peptide transpo 100.0 1.4E-36 4.6E-41 277.4 17.6 144 69-218 33-191 (271)
8 4a82_A Cystic fibrosis transme 100.0 1.2E-36 4E-41 303.4 15.9 143 69-217 355-511 (578)
9 3qf4_A ABC transporter, ATP-bi 100.0 1.7E-36 5.7E-41 303.1 16.4 142 69-216 357-512 (587)
10 2ghi_A Transport protein; mult 100.0 5.8E-36 2E-40 271.6 16.0 142 69-217 34-189 (260)
11 3b5x_A Lipid A export ATP-bind 100.0 6.8E-36 2.3E-40 298.0 17.8 143 69-217 357-514 (582)
12 4f4c_A Multidrug resistance pr 100.0 4.8E-36 1.6E-40 323.1 17.7 161 15-216 1074-1250(1321)
13 3tif_A Uncharacterized ABC tra 100.0 4.1E-36 1.4E-40 268.7 14.3 139 69-220 19-182 (235)
14 3qf4_B Uncharacterized ABC tra 100.0 1.6E-36 5.6E-41 303.6 13.0 142 69-216 369-524 (598)
15 3b60_A Lipid A export ATP-bind 100.0 8.6E-36 3E-40 297.3 18.1 143 69-217 357-514 (582)
16 2bbs_A Cystic fibrosis transme 100.0 3.7E-36 1.3E-40 277.4 13.7 144 67-217 50-193 (290)
17 2yl4_A ATP-binding cassette SU 100.0 1.1E-35 3.7E-40 297.2 17.5 143 69-217 358-517 (595)
18 3fvq_A Fe(3+) IONS import ATP- 100.0 9E-36 3.1E-40 282.4 15.5 136 69-217 18-172 (359)
19 3gfo_A Cobalt import ATP-bindi 100.0 1.1E-35 3.8E-40 272.3 14.5 137 69-218 22-178 (275)
20 3tui_C Methionine import ATP-b 100.0 1.4E-35 4.7E-40 281.7 14.9 136 69-217 42-197 (366)
21 3gd7_A Fusion complex of cysti 100.0 1.2E-35 4.1E-40 284.4 13.9 141 69-216 35-188 (390)
22 3rlf_A Maltose/maltodextrin im 100.0 1.1E-35 3.7E-40 283.8 13.3 136 69-217 17-167 (381)
23 4g1u_C Hemin import ATP-bindin 100.0 5.4E-35 1.8E-39 266.3 16.8 136 69-217 25-181 (266)
24 1ji0_A ABC transporter; ATP bi 100.0 6.5E-35 2.2E-39 261.4 16.7 137 69-217 20-173 (240)
25 1g6h_A High-affinity branched- 100.0 1.7E-35 5.7E-40 267.8 12.6 141 69-217 21-187 (257)
26 2olj_A Amino acid ABC transpor 100.0 5.3E-35 1.8E-39 266.1 16.0 137 69-218 38-194 (263)
27 2pcj_A ABC transporter, lipopr 100.0 2.1E-35 7.1E-40 262.1 12.3 138 69-219 18-176 (224)
28 2yyz_A Sugar ABC transporter, 100.0 7.3E-35 2.5E-39 276.2 15.4 136 69-217 17-167 (359)
29 1b0u_A Histidine permease; ABC 100.0 1.4E-34 4.9E-39 262.7 15.5 136 69-217 20-187 (262)
30 1z47_A CYSA, putative ABC-tran 100.0 4.5E-35 1.5E-39 277.3 12.6 136 69-217 29-179 (355)
31 1v43_A Sugar-binding transport 100.0 1E-34 3.4E-39 276.4 14.3 136 69-217 25-175 (372)
32 3g5u_A MCG1178, multidrug resi 100.0 1.7E-34 5.7E-39 310.5 17.7 161 15-216 385-559 (1284)
33 1oxx_K GLCV, glucose, ABC tran 100.0 1E-34 3.5E-39 274.6 14.1 136 70-218 20-175 (353)
34 1sgw_A Putative ABC transporte 100.0 1.7E-34 5.9E-39 255.5 14.1 144 69-227 23-177 (214)
35 2it1_A 362AA long hypothetical 100.0 2.1E-34 7.3E-39 273.3 15.6 136 69-217 17-167 (362)
36 2nq2_C Hypothetical ABC transp 100.0 2.5E-34 8.5E-39 260.0 14.8 137 69-218 19-163 (253)
37 1vpl_A ABC transporter, ATP-bi 100.0 3.1E-34 1.1E-38 260.0 15.4 136 69-217 29-180 (256)
38 2ihy_A ABC transporter, ATP-bi 100.0 1.8E-34 6.1E-39 264.6 13.3 136 69-217 35-195 (279)
39 3d31_A Sulfate/molybdate ABC t 100.0 9.2E-35 3.2E-39 274.5 10.6 135 70-218 15-162 (348)
40 2onk_A Molybdate/tungstate ABC 100.0 4.6E-34 1.6E-38 256.5 14.4 134 70-217 14-160 (240)
41 1g29_1 MALK, maltose transport 100.0 2.8E-34 9.4E-39 273.4 13.7 137 69-218 17-174 (372)
42 2yz2_A Putative ABC transporte 100.0 3.1E-34 1.1E-38 260.8 12.5 135 69-216 21-171 (266)
43 2qi9_C Vitamin B12 import ATP- 100.0 1.5E-33 5.1E-38 254.6 13.7 147 61-217 6-167 (249)
44 2pjz_A Hypothetical protein ST 100.0 4.1E-33 1.4E-37 253.7 12.8 129 69-217 19-162 (263)
45 2d2e_A SUFC protein; ABC-ATPas 100.0 8.1E-33 2.8E-37 249.2 13.7 137 69-218 17-178 (250)
46 3g5u_A MCG1178, multidrug resi 100.0 7.8E-33 2.7E-37 297.5 15.0 143 69-217 1047-1205(1284)
47 2zu0_C Probable ATP-dependent 100.0 1.9E-32 6.3E-37 249.4 14.7 145 69-226 34-207 (267)
48 3ozx_A RNAse L inhibitor; ATP 99.9 5.9E-28 2E-32 239.5 13.2 137 69-218 282-420 (538)
49 1yqt_A RNAse L inhibitor; ATP- 99.9 8E-28 2.7E-32 238.4 13.0 135 69-217 300-435 (538)
50 3bk7_A ABC transporter ATP-bin 99.9 9.2E-28 3.1E-32 241.2 13.1 135 69-217 370-505 (607)
51 3j16_B RLI1P; ribosome recycli 99.9 5.9E-26 2E-30 228.1 11.9 136 68-217 360-501 (608)
52 2iw3_A Elongation factor 3A; a 99.9 1.2E-25 3.9E-30 235.4 14.3 70 68-137 686-762 (986)
53 1yqt_A RNAse L inhibitor; ATP- 99.9 3.7E-26 1.3E-30 226.5 7.6 129 69-217 36-192 (538)
54 3bk7_A ABC transporter ATP-bin 99.9 7.6E-26 2.6E-30 227.2 9.0 129 69-217 106-262 (607)
55 3ux8_A Excinuclease ABC, A sub 99.9 8.7E-26 3E-30 228.3 5.0 143 68-216 31-237 (670)
56 2iw3_A Elongation factor 3A; a 99.9 2.4E-23 8.2E-28 217.9 14.1 130 67-217 447-582 (986)
57 3j16_B RLI1P; ribosome recycli 99.9 9.4E-24 3.2E-28 212.1 8.9 131 69-217 92-255 (608)
58 3ozx_A RNAse L inhibitor; ATP 99.9 3.7E-24 1.3E-28 212.3 5.7 121 78-217 22-172 (538)
59 3ux8_A Excinuclease ABC, A sub 99.9 2.6E-23 8.8E-28 210.3 7.8 43 171-216 537-579 (670)
60 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.4E-24 8.3E-29 210.0 -3.3 132 71-217 128-276 (460)
61 3b85_A Phosphate starvation-in 99.8 5.3E-24 1.8E-28 187.2 -7.1 117 62-213 7-134 (208)
62 1tq4_A IIGP1, interferon-induc 99.8 1.3E-22 4.4E-27 195.4 -3.7 136 68-218 36-201 (413)
63 3pih_A Uvrabc system protein A 99.8 4.6E-20 1.6E-24 192.4 11.6 43 171-216 799-841 (916)
64 2v9p_A Replication protein E1; 99.8 6.8E-23 2.3E-27 190.2 -9.7 112 68-216 113-226 (305)
65 4aby_A DNA repair protein RECN 99.8 7E-20 2.4E-24 173.5 9.8 38 68-106 48-85 (415)
66 4gp7_A Metallophosphoesterase; 99.8 1E-20 3.4E-25 160.0 2.7 113 73-217 1-117 (171)
67 3aez_A Pantothenate kinase; tr 99.8 4.2E-21 1.4E-25 178.3 -2.8 120 78-215 87-208 (312)
68 1z6g_A Guanylate kinase; struc 99.8 9.1E-22 3.1E-26 172.9 -8.0 125 69-217 11-161 (218)
69 2r6f_A Excinuclease ABC subuni 99.8 1.9E-19 6.6E-24 187.7 7.2 43 59-102 629-671 (972)
70 2vf7_A UVRA2, excinuclease ABC 99.8 1.8E-19 6E-24 186.6 6.9 46 59-105 502-548 (842)
71 2ygr_A Uvrabc system protein A 99.8 2.6E-19 9E-24 187.2 8.0 43 59-102 647-689 (993)
72 3sop_A Neuronal-specific septi 99.8 2.5E-21 8.6E-26 176.3 -8.3 115 83-217 4-129 (270)
73 3b9q_A Chloroplast SRP recepto 99.7 5.8E-20 2E-24 169.9 -2.7 124 71-217 90-236 (302)
74 1ye8_A Protein THEP1, hypothet 99.7 5.9E-20 2E-24 157.3 -2.6 101 83-217 2-117 (178)
75 1e69_A Chromosome segregation 99.7 3.2E-18 1.1E-22 158.5 5.0 39 173-217 215-257 (322)
76 2og2_A Putative signal recogni 99.7 1.3E-18 4.5E-23 164.7 -0.0 123 72-217 148-293 (359)
77 2pt7_A CAG-ALFA; ATPase, prote 99.7 3.4E-18 1.2E-22 159.7 0.5 92 70-212 160-251 (330)
78 2jeo_A Uridine-cytidine kinase 99.7 8.2E-19 2.8E-23 155.9 -3.8 127 67-213 11-145 (245)
79 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 2.5E-17 8.7E-22 155.6 5.0 48 172-219 274-321 (365)
80 3asz_A Uridine kinase; cytidin 99.6 1.3E-16 4.5E-21 137.3 -0.9 124 78-223 3-134 (211)
81 2dpy_A FLII, flagellum-specifi 99.6 4.1E-16 1.4E-20 151.0 0.9 109 67-198 144-275 (438)
82 2eyu_A Twitching motility prot 99.5 6.3E-16 2.1E-20 139.9 1.1 62 60-123 6-69 (261)
83 2f1r_A Molybdopterin-guanine d 99.5 4.1E-17 1.4E-21 139.2 -6.8 110 82-199 3-125 (171)
84 1znw_A Guanylate kinase, GMP k 99.5 1.9E-16 6.6E-21 137.0 -6.9 68 68-137 9-86 (207)
85 1htw_A HI0065; nucleotide-bind 99.5 1.8E-15 6.2E-20 127.3 -0.9 70 68-138 20-97 (158)
86 2qnr_A Septin-2, protein NEDD5 99.5 1.5E-16 5.3E-21 146.4 -9.5 121 67-217 10-144 (301)
87 1zp6_A Hypothetical protein AT 99.5 6E-15 2E-19 124.6 0.8 112 77-199 5-131 (191)
88 1ewq_A DNA mismatch repair pro 99.5 5.8E-15 2E-19 151.7 0.1 101 68-217 566-674 (765)
89 1rj9_A FTSY, signal recognitio 99.5 2.1E-14 7.3E-19 132.7 3.6 102 80-197 101-222 (304)
90 1lw7_A Transcriptional regulat 99.4 7.5E-17 2.6E-21 151.5 -13.5 136 70-211 157-329 (365)
91 2ewv_A Twitching motility prot 99.4 6.5E-16 2.2E-20 146.4 -8.2 140 69-216 126-316 (372)
92 2i3b_A HCR-ntpase, human cance 99.4 1.6E-15 5.4E-20 131.2 -6.0 116 81-228 1-133 (189)
93 2rcn_A Probable GTPase ENGC; Y 99.4 8.2E-14 2.8E-18 131.8 5.2 116 70-196 205-332 (358)
94 1tf7_A KAIC; homohexamer, hexa 99.4 4.7E-14 1.6E-18 138.8 3.6 111 75-217 275-386 (525)
95 3c8u_A Fructokinase; YP_612366 99.4 2.4E-15 8.2E-20 130.2 -5.0 115 78-211 19-140 (208)
96 1pui_A ENGB, probable GTP-bind 99.4 1.3E-15 4.4E-20 129.9 -6.8 135 70-218 17-185 (210)
97 2o8b_B DNA mismatch repair pro 99.4 7.7E-15 2.6E-19 154.9 -2.9 108 67-216 768-883 (1022)
98 3qkt_A DNA double-strand break 99.4 9.7E-13 3.3E-17 122.5 10.6 40 172-217 243-288 (339)
99 1cr0_A DNA primase/helicase; R 99.4 2E-14 6.8E-19 130.4 -1.3 46 68-113 22-68 (296)
100 1odf_A YGR205W, hypothetical 3 99.4 2.3E-15 7.9E-20 138.3 -7.8 126 79-217 29-168 (290)
101 2obl_A ESCN; ATPase, hydrolase 99.4 3.1E-13 1.1E-17 127.1 5.4 49 67-116 58-106 (347)
102 3thx_B DNA mismatch repair pro 99.4 6.4E-14 2.2E-18 146.4 0.7 109 67-217 659-768 (918)
103 2gza_A Type IV secretion syste 99.4 4.7E-14 1.6E-18 133.0 -0.3 123 71-193 165-303 (361)
104 2o5v_A DNA replication and rep 99.4 5.5E-13 1.9E-17 126.1 6.4 35 68-103 14-48 (359)
105 2qag_C Septin-7; cell cycle, c 99.3 3.3E-14 1.1E-18 137.0 -3.3 123 67-217 23-156 (418)
106 4a74_A DNA repair and recombin 99.3 3.7E-14 1.3E-18 122.3 -2.8 48 77-124 21-68 (231)
107 1pzn_A RAD51, DNA repair and r 99.3 3.7E-14 1.3E-18 133.2 -3.2 41 69-109 118-161 (349)
108 3thx_A DNA mismatch repair pro 99.3 1.7E-12 6E-17 135.8 6.9 100 67-217 648-757 (934)
109 1p9r_A General secretion pathw 99.3 3.2E-14 1.1E-18 137.0 -6.8 113 70-199 158-313 (418)
110 2yv5_A YJEQ protein; hydrolase 99.2 9.3E-13 3.2E-17 121.2 0.2 107 77-190 161-300 (302)
111 1nlf_A Regulatory protein REPA 99.2 5.2E-12 1.8E-16 113.8 4.7 112 77-212 26-144 (279)
112 2qag_B Septin-6, protein NEDD5 99.2 3.6E-12 1.2E-16 123.1 2.2 70 71-142 30-109 (427)
113 2x8a_A Nuclear valosin-contain 99.2 1.8E-14 6.2E-19 130.8 -14.5 129 67-223 32-178 (274)
114 2bbw_A Adenylate kinase 4, AK4 99.2 6.5E-13 2.2E-17 117.5 -4.1 59 80-138 26-97 (246)
115 3szr_A Interferon-induced GTP- 99.2 7.5E-13 2.6E-17 132.8 -4.3 61 75-138 42-120 (608)
116 1wb9_A DNA mismatch repair pro 99.2 5.8E-12 2E-16 130.1 1.7 38 67-105 594-631 (800)
117 3jvv_A Twitching mobility prot 99.1 4.4E-12 1.5E-16 119.7 0.4 36 77-112 119-155 (356)
118 2w0m_A SSO2452; RECA, SSPF, un 99.1 2.1E-11 7.3E-16 104.5 4.1 46 69-114 10-56 (235)
119 1nij_A Hypothetical protein YJ 99.1 1.4E-13 4.8E-18 127.3 -11.0 36 82-117 5-48 (318)
120 3euj_A Chromosome partition pr 99.1 2E-11 6.7E-16 119.6 3.1 48 68-116 17-64 (483)
121 1udx_A The GTP-binding protein 99.1 3.3E-11 1.1E-15 116.0 4.5 113 71-196 147-271 (416)
122 2yhs_A FTSY, cell division pro 99.1 2.1E-11 7.1E-16 119.7 2.5 69 71-139 283-371 (503)
123 2ehv_A Hypothetical protein PH 99.1 1.5E-11 5.2E-16 107.1 0.7 39 77-115 26-66 (251)
124 3e70_C DPA, signal recognition 99.1 3.7E-11 1.3E-15 112.2 2.3 62 77-138 125-206 (328)
125 1u0l_A Probable GTPase ENGC; p 99.0 6.1E-11 2.1E-15 108.7 0.8 51 76-126 164-230 (301)
126 1sq5_A Pantothenate kinase; P- 99.0 4.6E-11 1.6E-15 109.8 -1.2 46 69-114 49-115 (308)
127 3lnc_A Guanylate kinase, GMP k 98.9 3.7E-10 1.3E-14 98.6 2.4 36 70-105 16-52 (231)
128 1vma_A Cell division protein F 98.9 5.1E-10 1.7E-14 103.5 3.3 99 73-212 96-197 (306)
129 2cvh_A DNA repair and recombin 98.9 1.6E-09 5.6E-14 92.4 5.8 110 70-216 8-120 (220)
130 1s96_A Guanylate kinase, GMP k 98.9 3.1E-10 1.1E-14 99.9 1.1 52 76-127 11-73 (219)
131 3tr0_A Guanylate kinase, GMP k 98.9 8E-10 2.7E-14 93.7 3.3 49 75-127 1-62 (205)
132 1tf7_A KAIC; homohexamer, hexa 98.9 3E-10 1E-14 111.6 0.6 50 67-116 24-76 (525)
133 1in4_A RUVB, holliday junction 98.8 1.1E-11 3.8E-16 114.9 -9.9 69 68-137 31-123 (334)
134 1t9h_A YLOQ, probable GTPase E 98.8 6.3E-10 2.2E-14 103.1 1.5 61 76-137 168-248 (307)
135 1f2t_B RAD50 ABC-ATPase; DNA d 98.8 8.9E-10 3.1E-14 91.6 2.2 41 172-218 52-98 (148)
136 1iy2_A ATP-dependent metallopr 98.8 9.9E-12 3.4E-16 111.7 -10.6 46 67-116 61-106 (278)
137 3pih_A Uvrabc system protein A 98.8 4.7E-10 1.6E-14 117.2 0.4 108 98-216 385-499 (916)
138 2qm8_A GTPase/ATPase; G protei 98.8 4.1E-10 1.4E-14 105.1 -0.5 61 68-128 42-119 (337)
139 3kta_B Chromosome segregation 98.7 2.1E-09 7.2E-14 91.6 0.7 42 174-217 61-102 (173)
140 2oap_1 GSPE-2, type II secreti 98.7 2.2E-09 7.4E-14 105.8 0.6 49 69-117 248-296 (511)
141 1qhl_A Protein (cell division 98.7 4.8E-10 1.6E-14 99.6 -4.2 41 75-116 22-62 (227)
142 3k1j_A LON protease, ATP-depen 98.6 3.8E-10 1.3E-14 112.7 -6.8 59 66-124 45-112 (604)
143 3kta_A Chromosome segregation 98.6 2.5E-08 8.6E-13 83.2 3.9 38 72-110 18-55 (182)
144 1lvg_A Guanylate kinase, GMP k 98.6 1.3E-08 4.4E-13 87.4 1.9 28 79-106 2-29 (198)
145 1ls1_A Signal recognition part 98.6 4.6E-08 1.6E-12 89.6 5.2 42 72-115 91-132 (295)
146 3a00_A Guanylate kinase, GMP k 98.5 2.4E-08 8.1E-13 84.4 2.3 26 81-106 1-26 (186)
147 2j41_A Guanylate kinase; GMP, 98.5 5E-08 1.7E-12 82.5 3.8 35 76-110 1-35 (207)
148 2r6f_A Excinuclease ABC subuni 98.5 4.2E-08 1.4E-12 102.8 3.0 42 171-216 498-539 (972)
149 2ygr_A Uvrabc system protein A 98.4 6.6E-08 2.3E-12 101.5 3.2 41 171-215 515-555 (993)
150 4eun_A Thermoresistant glucoki 98.4 8.5E-08 2.9E-12 81.8 2.9 38 75-116 23-60 (200)
151 2bdt_A BH3686; alpha-beta prot 98.4 9.8E-08 3.4E-12 80.2 2.7 33 81-116 2-34 (189)
152 3vaa_A Shikimate kinase, SK; s 98.4 1.6E-07 5.5E-12 80.0 3.5 38 68-105 12-49 (199)
153 3uie_A Adenylyl-sulfate kinase 98.4 2.3E-08 8E-13 85.3 -1.8 46 70-116 14-61 (200)
154 1kgd_A CASK, peripheral plasma 98.4 1.2E-07 4E-12 79.9 2.3 34 79-112 3-37 (180)
155 3lda_A DNA repair protein RAD5 98.3 1.7E-07 5.9E-12 89.6 3.4 40 77-116 174-220 (400)
156 2vf7_A UVRA2, excinuclease ABC 98.3 1.9E-07 6.5E-12 96.9 2.3 41 171-215 373-413 (842)
157 1sxj_E Activator 1 40 kDa subu 98.3 2.7E-07 9.1E-12 84.6 2.9 33 84-116 39-72 (354)
158 1n0w_A DNA repair protein RAD5 98.3 6.2E-07 2.1E-11 77.4 5.0 39 77-115 20-65 (243)
159 3ec2_A DNA replication protein 98.3 1.1E-07 3.6E-12 79.5 -0.2 36 75-110 32-67 (180)
160 4e22_A Cytidylate kinase; P-lo 98.2 1.8E-07 6.1E-12 83.2 1.0 35 79-113 25-62 (252)
161 3nwj_A ATSK2; P loop, shikimat 98.2 9.7E-08 3.3E-12 85.7 -1.2 38 68-105 32-72 (250)
162 2vp4_A Deoxynucleoside kinase; 98.2 4.6E-07 1.6E-11 79.2 2.9 38 75-116 14-51 (230)
163 2dhr_A FTSH; AAA+ protein, hex 98.2 3E-08 1E-12 97.4 -5.8 46 67-116 52-97 (499)
164 2kjq_A DNAA-related protein; s 98.2 4.5E-07 1.5E-11 74.7 2.2 35 70-110 30-64 (149)
165 1rz3_A Hypothetical protein rb 98.2 4.4E-07 1.5E-11 77.6 2.1 38 77-114 18-55 (201)
166 3tau_A Guanylate kinase, GMP k 98.2 8.9E-07 3E-11 76.2 4.0 29 79-107 6-34 (208)
167 1ixz_A ATP-dependent metallopr 98.2 3E-07 1E-11 80.9 0.7 45 68-116 38-82 (254)
168 4ad8_A DNA repair protein RECN 98.2 5.6E-07 1.9E-11 88.1 2.5 36 68-104 48-83 (517)
169 1zu4_A FTSY; GTPase, signal re 98.1 5.3E-07 1.8E-11 83.6 1.7 44 72-115 96-139 (320)
170 3tqc_A Pantothenate kinase; bi 98.1 2.3E-07 7.8E-12 86.3 -0.8 56 67-128 72-135 (321)
171 3ney_A 55 kDa erythrocyte memb 98.1 9.8E-07 3.3E-11 76.7 3.1 32 75-106 13-44 (197)
172 1knq_A Gluconate kinase; ALFA/ 98.1 1E-06 3.5E-11 72.9 2.6 34 79-116 6-39 (175)
173 1svm_A Large T antigen; AAA+ f 98.1 5.1E-07 1.8E-11 85.7 0.8 43 69-114 157-199 (377)
174 2qt1_A Nicotinamide riboside k 98.1 1.7E-06 6E-11 73.6 4.0 43 77-129 17-59 (207)
175 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 3.2E-06 1.1E-10 80.7 5.8 40 77-116 16-67 (392)
176 3cr8_A Sulfate adenylyltranfer 98.1 8.6E-07 3E-11 88.0 2.0 40 77-116 365-406 (552)
177 1oix_A RAS-related protein RAB 98.1 2.2E-06 7.4E-11 72.1 3.9 35 83-117 31-76 (191)
178 1w1w_A Structural maintenance 98.0 2.1E-06 7.1E-11 81.9 3.7 34 76-109 21-54 (430)
179 2qtf_A Protein HFLX, GTP-bindi 98.0 5.7E-06 1.9E-10 77.9 5.6 45 80-124 177-233 (364)
180 1w1w_A Structural maintenance 97.9 2.5E-06 8.4E-11 81.4 2.3 41 175-217 331-371 (430)
181 1kag_A SKI, shikimate kinase I 97.9 3.4E-06 1.2E-10 69.3 2.5 28 80-107 3-30 (173)
182 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 6.3E-06 2.2E-10 67.8 3.9 30 72-102 15-44 (149)
183 2f9l_A RAB11B, member RAS onco 97.9 5.8E-06 2E-10 69.5 3.6 35 83-117 7-52 (199)
184 2p67_A LAO/AO transport system 97.9 1.5E-06 5.1E-11 80.8 -0.3 47 68-114 43-89 (341)
185 3auy_A DNA double-strand break 97.9 4E-06 1.4E-10 78.6 2.1 31 71-102 16-46 (371)
186 2pez_A Bifunctional 3'-phospho 97.8 5.5E-06 1.9E-10 68.9 2.0 36 79-115 3-40 (179)
187 4eaq_A DTMP kinase, thymidylat 97.8 9.6E-06 3.3E-10 71.2 3.6 41 71-112 13-56 (229)
188 2px0_A Flagellar biosynthesis 97.8 6.3E-06 2.2E-10 75.4 2.3 51 79-136 103-153 (296)
189 1cke_A CK, MSSA, protein (cyti 97.8 3.3E-06 1.1E-10 72.4 -0.1 34 81-114 5-41 (227)
190 2www_A Methylmalonic aciduria 97.7 1.2E-05 4E-10 75.1 2.7 36 79-114 72-107 (349)
191 2r6a_A DNAB helicase, replicat 97.7 3.2E-05 1.1E-09 74.4 5.0 42 69-110 191-232 (454)
192 2xau_A PRE-mRNA-splicing facto 97.7 3E-06 1E-10 87.2 -2.4 116 78-215 106-223 (773)
193 1m7g_A Adenylylsulfate kinase; 97.6 9.1E-06 3.1E-10 69.6 0.8 40 76-115 20-61 (211)
194 3m6a_A ATP-dependent protease 97.6 6.1E-06 2.1E-10 81.4 -0.3 47 69-116 97-143 (543)
195 3qks_A DNA double-strand break 97.6 3.4E-05 1.2E-09 66.3 3.9 29 73-102 16-44 (203)
196 3t34_A Dynamin-related protein 97.6 2.5E-05 8.4E-10 72.6 3.0 45 69-116 25-71 (360)
197 4ad8_A DNA repair protein RECN 97.6 1.2E-05 4E-10 78.7 0.6 39 175-217 394-433 (517)
198 2dr3_A UPF0273 protein PH0284; 97.6 2.6E-05 9E-10 67.1 2.7 36 71-106 12-49 (247)
199 2ce7_A Cell division protein F 97.5 5.3E-05 1.8E-09 73.9 4.5 35 69-105 39-73 (476)
200 2yvu_A Probable adenylyl-sulfa 97.5 2.7E-05 9.2E-10 65.0 2.1 36 77-112 9-44 (186)
201 4a1f_A DNAB helicase, replicat 97.5 8.7E-05 3E-09 69.4 5.6 120 70-228 35-170 (338)
202 1y63_A LMAJ004144AAA protein; 97.5 4.8E-05 1.7E-09 63.7 3.2 32 73-104 2-33 (184)
203 1jjv_A Dephospho-COA kinase; P 97.5 5.5E-05 1.9E-09 64.0 3.5 22 83-104 4-25 (206)
204 2ffh_A Protein (FFH); SRP54, s 97.5 4.1E-05 1.4E-09 73.7 2.7 42 72-115 91-132 (425)
205 2gj8_A MNME, tRNA modification 97.5 0.00015 5.2E-09 59.6 5.7 27 79-105 2-28 (172)
206 1m2o_B GTP-binding protein SAR 97.4 7.7E-05 2.6E-09 62.3 3.9 33 70-103 13-45 (190)
207 1j8m_F SRP54, signal recogniti 97.4 2.7E-05 9.2E-10 71.3 0.8 42 72-114 89-131 (297)
208 3hr8_A Protein RECA; alpha and 97.4 5.3E-05 1.8E-09 71.3 2.5 36 77-112 57-92 (356)
209 3ice_A Transcription terminati 97.4 5.9E-05 2E-09 72.2 2.9 34 73-106 166-199 (422)
210 2qor_A Guanylate kinase; phosp 97.4 7.6E-05 2.6E-09 63.4 3.1 30 77-106 8-37 (204)
211 1mky_A Probable GTP-binding pr 97.4 0.00022 7.5E-09 68.2 6.4 36 83-118 182-229 (439)
212 2if2_A Dephospho-COA kinase; a 97.4 7.7E-05 2.6E-09 62.9 2.8 21 83-103 3-23 (204)
213 2wji_A Ferrous iron transport 97.3 0.00037 1.3E-08 56.5 6.5 23 83-105 5-27 (165)
214 1f6b_A SAR1; gtpases, N-termin 97.3 4.7E-05 1.6E-09 64.2 0.9 47 69-116 14-68 (198)
215 2wjg_A FEOB, ferrous iron tran 97.3 0.00025 8.6E-09 58.1 5.3 22 83-104 9-30 (188)
216 1ega_A Protein (GTP-binding pr 97.2 0.00012 4.2E-09 66.6 2.4 26 80-105 7-32 (301)
217 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00019 6.4E-09 68.5 3.6 40 77-116 18-68 (396)
218 2zej_A Dardarin, leucine-rich 97.2 0.00022 7.4E-09 59.0 3.4 26 83-108 4-29 (184)
219 3cm0_A Adenylate kinase; ATP-b 97.1 0.00021 7.3E-09 59.0 3.2 25 79-103 2-26 (186)
220 1sxj_C Activator 1 40 kDa subu 97.1 3.4E-05 1.2E-09 70.8 -1.9 43 68-110 31-75 (340)
221 3b9p_A CG5977-PA, isoform A; A 97.1 0.0014 4.6E-08 58.4 8.6 27 79-105 52-78 (297)
222 3t61_A Gluconokinase; PSI-biol 97.1 0.0002 6.8E-09 60.5 2.9 25 81-105 18-42 (202)
223 3auy_A DNA double-strand break 97.1 0.00038 1.3E-08 65.0 4.4 37 175-217 278-321 (371)
224 3lxx_A GTPase IMAP family memb 97.0 0.0013 4.5E-08 56.9 7.4 28 83-110 31-58 (239)
225 2ga8_A Hypothetical 39.9 kDa p 97.0 8.7E-05 3E-09 70.0 -0.3 36 70-105 11-48 (359)
226 1q3t_A Cytidylate kinase; nucl 97.0 0.00035 1.2E-08 60.7 3.5 28 77-104 12-39 (236)
227 1np6_A Molybdopterin-guanine d 97.0 0.00021 7.2E-09 60.4 2.0 27 82-108 7-33 (174)
228 3kb2_A SPBC2 prophage-derived 97.0 0.00039 1.3E-08 56.3 3.3 24 82-105 2-25 (173)
229 1lv7_A FTSH; alpha/beta domain 97.0 0.00025 8.7E-09 62.0 2.3 35 70-106 36-70 (257)
230 2p5t_B PEZT; postsegregational 97.0 0.00031 1.1E-08 62.0 2.6 38 77-116 28-65 (253)
231 1qhx_A CPT, protein (chloramph 97.0 0.00051 1.7E-08 56.3 3.8 26 81-106 3-28 (178)
232 2zr9_A Protein RECA, recombina 96.9 0.00031 1.1E-08 65.6 2.6 32 77-108 57-88 (349)
233 3bh0_A DNAB-like replicative h 96.9 0.00096 3.3E-08 61.0 5.5 35 69-103 56-90 (315)
234 1kht_A Adenylate kinase; phosp 96.9 0.00057 1.9E-08 56.3 3.6 25 81-105 3-27 (192)
235 2ius_A DNA translocase FTSK; n 96.9 0.00047 1.6E-08 67.9 3.5 42 73-114 159-202 (512)
236 2qag_A Septin-2, protein NEDD5 96.9 0.00031 1.1E-08 65.7 2.0 38 68-111 30-67 (361)
237 4ag6_A VIRB4 ATPase, type IV s 96.9 0.00037 1.3E-08 65.2 2.5 35 80-114 34-68 (392)
238 2dy1_A Elongation factor G; tr 96.9 0.00029 9.8E-09 71.2 1.8 38 75-112 3-42 (665)
239 3lw7_A Adenylate kinase relate 96.8 0.00059 2E-08 54.8 3.3 19 83-101 3-21 (179)
240 2rhm_A Putative kinase; P-loop 96.8 0.00058 2E-08 56.5 3.2 27 79-105 3-29 (193)
241 1ypw_A Transitional endoplasmi 96.8 0.00045 1.5E-08 71.3 2.8 33 75-107 232-264 (806)
242 3r20_A Cytidylate kinase; stru 96.8 0.00025 8.6E-09 62.9 0.8 24 81-104 9-32 (233)
243 1gtv_A TMK, thymidylate kinase 96.7 0.0002 6.7E-09 60.5 -0.5 25 83-107 2-26 (214)
244 1vht_A Dephospho-COA kinase; s 96.7 0.00095 3.3E-08 56.9 3.7 24 80-103 3-26 (218)
245 1uf9_A TT1252 protein; P-loop, 96.7 0.0008 2.7E-08 56.1 3.1 24 81-104 8-31 (203)
246 2v54_A DTMP kinase, thymidylat 96.7 0.001 3.5E-08 55.5 3.8 26 80-105 3-28 (204)
247 2jaq_A Deoxyguanosine kinase; 96.7 0.00091 3.1E-08 55.6 3.4 23 83-105 2-24 (205)
248 3kl4_A SRP54, signal recogniti 96.7 0.00055 1.9E-08 66.0 2.2 35 80-114 96-130 (433)
249 3trf_A Shikimate kinase, SK; a 96.7 0.001 3.6E-08 54.9 3.5 26 80-105 4-29 (185)
250 2ze6_A Isopentenyl transferase 96.6 0.0009 3.1E-08 59.2 3.2 24 82-105 2-25 (253)
251 3iij_A Coilin-interacting nucl 96.6 0.00088 3E-08 55.3 2.9 25 79-103 9-33 (180)
252 2plr_A DTMP kinase, probable t 96.6 0.0012 4.1E-08 55.2 3.7 28 80-107 3-30 (213)
253 3k53_A Ferrous iron transport 96.6 0.0023 8E-08 56.7 5.6 45 83-127 5-60 (271)
254 1ly1_A Polynucleotide kinase; 96.6 0.0012 4E-08 53.8 3.4 22 82-103 3-24 (181)
255 1ex7_A Guanylate kinase; subst 96.6 0.0011 3.7E-08 56.7 3.2 22 83-104 3-24 (186)
256 2wwf_A Thymidilate kinase, put 96.6 0.0012 4.1E-08 55.5 3.4 27 79-105 8-34 (212)
257 2c95_A Adenylate kinase 1; tra 96.6 0.0012 4E-08 54.7 3.2 27 79-105 7-33 (196)
258 1via_A Shikimate kinase; struc 96.6 0.001 3.5E-08 54.7 2.8 23 83-105 6-28 (175)
259 1tev_A UMP-CMP kinase; ploop, 96.5 0.0015 5E-08 53.8 3.5 24 81-104 3-26 (196)
260 1nn5_A Similar to deoxythymidy 96.5 0.0014 4.7E-08 55.1 3.4 28 78-105 6-33 (215)
261 1gvn_B Zeta; postsegregational 96.5 0.0013 4.5E-08 59.4 3.3 36 78-115 30-65 (287)
262 2vli_A Antibiotic resistance p 96.5 0.0012 4.3E-08 54.1 2.6 27 79-105 3-29 (183)
263 1jal_A YCHF protein; nucleotid 96.5 0.0024 8.2E-08 60.2 4.9 36 81-116 2-48 (363)
264 3ihw_A Centg3; RAS, centaurin, 96.4 0.0034 1.2E-07 51.9 5.1 34 83-116 22-64 (184)
265 3cf0_A Transitional endoplasmi 96.4 0.0011 3.8E-08 59.9 2.2 38 76-115 44-81 (301)
266 1nks_A Adenylate kinase; therm 96.4 0.0016 5.6E-08 53.4 3.0 24 83-106 3-26 (194)
267 4fcw_A Chaperone protein CLPB; 96.4 0.0015 5E-08 58.3 2.8 32 81-112 47-78 (311)
268 2z0h_A DTMP kinase, thymidylat 96.3 0.002 6.9E-08 53.3 3.3 23 83-105 2-24 (197)
269 1v5w_A DMC1, meiotic recombina 96.3 0.0027 9.3E-08 58.7 4.5 28 77-104 118-145 (343)
270 3llm_A ATP-dependent RNA helic 96.3 0.0014 4.9E-08 56.8 2.4 27 77-103 72-98 (235)
271 1fzq_A ADP-ribosylation factor 96.3 0.0035 1.2E-07 51.5 4.7 23 82-104 17-39 (181)
272 3ake_A Cytidylate kinase; CMP 96.3 0.002 6.9E-08 53.8 3.1 23 83-105 4-26 (208)
273 2ged_A SR-beta, signal recogni 96.3 0.0021 7.2E-08 52.8 3.2 25 81-105 48-72 (193)
274 1xjc_A MOBB protein homolog; s 96.3 0.0016 5.5E-08 55.0 2.4 26 82-107 5-30 (169)
275 1aky_A Adenylate kinase; ATP:A 96.3 0.0026 9E-08 54.2 3.8 27 79-105 2-28 (220)
276 2bwj_A Adenylate kinase 5; pho 96.3 0.0022 7.6E-08 53.2 3.2 27 79-105 10-36 (199)
277 1z2a_A RAS-related protein RAB 96.2 0.0022 7.4E-08 51.0 2.9 23 83-105 7-29 (168)
278 2erx_A GTP-binding protein DI- 96.2 0.0025 8.7E-08 50.7 3.2 22 83-104 5-26 (172)
279 2z43_A DNA repair and recombin 96.2 0.0034 1.2E-07 57.4 4.4 28 77-104 103-130 (324)
280 2nzj_A GTP-binding protein REM 96.2 0.0026 8.9E-08 51.0 3.2 23 83-105 6-28 (175)
281 1kao_A RAP2A; GTP-binding prot 96.2 0.0025 8.5E-08 50.3 2.9 22 83-104 5-26 (167)
282 1zd8_A GTP:AMP phosphotransfer 96.2 0.0026 9E-08 54.6 3.2 27 79-105 5-31 (227)
283 2lkc_A Translation initiation 96.2 0.0036 1.2E-07 50.4 3.9 25 80-104 7-31 (178)
284 2cdn_A Adenylate kinase; phosp 96.2 0.0033 1.1E-07 52.8 3.7 26 80-105 19-44 (201)
285 2w58_A DNAI, primosome compone 96.2 0.0028 9.6E-08 53.1 3.3 27 82-108 55-81 (202)
286 1ukz_A Uridylate kinase; trans 96.2 0.0031 1.1E-07 52.8 3.5 26 80-105 14-39 (203)
287 2dyk_A GTP-binding protein; GT 96.2 0.0029 9.8E-08 50.0 3.2 23 83-105 3-25 (161)
288 1u8z_A RAS-related protein RAL 96.2 0.0026 8.9E-08 50.3 2.9 22 83-104 6-27 (168)
289 2ce2_X GTPase HRAS; signaling 96.1 0.0025 8.5E-08 50.2 2.7 23 83-105 5-27 (166)
290 1z0j_A RAB-22, RAS-related pro 96.1 0.0027 9.1E-08 50.6 2.9 23 83-105 8-30 (170)
291 3tw8_B RAS-related protein RAB 96.1 0.0026 8.9E-08 51.1 2.9 23 83-105 11-33 (181)
292 2pbr_A DTMP kinase, thymidylat 96.1 0.0031 1E-07 51.9 3.3 23 83-105 2-24 (195)
293 3bos_A Putative DNA replicatio 96.1 0.0024 8.1E-08 54.0 2.7 28 80-107 51-78 (242)
294 1ek0_A Protein (GTP-binding pr 96.1 0.0027 9.4E-08 50.4 2.9 23 83-105 5-27 (170)
295 3q85_A GTP-binding protein REM 96.1 0.0034 1.2E-07 50.1 3.4 23 83-105 4-26 (169)
296 3q72_A GTP-binding protein RAD 96.1 0.0026 8.8E-08 50.7 2.7 24 83-106 4-27 (166)
297 3fb4_A Adenylate kinase; psych 96.1 0.0032 1.1E-07 53.2 3.3 22 83-104 2-23 (216)
298 1z08_A RAS-related protein RAB 96.1 0.0032 1.1E-07 50.2 3.2 22 83-104 8-29 (170)
299 1ky3_A GTP-binding protein YPT 96.1 0.0032 1.1E-07 50.7 3.2 23 83-105 10-32 (182)
300 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.003 1E-07 50.8 2.9 23 83-105 9-31 (177)
301 1c1y_A RAS-related protein RAP 96.1 0.003 1E-07 50.1 2.9 22 83-104 5-26 (167)
302 1e6c_A Shikimate kinase; phosp 96.1 0.0029 1E-07 51.3 2.8 23 82-104 3-25 (173)
303 1qf9_A UMP/CMP kinase, protein 96.1 0.0032 1.1E-07 51.6 3.1 24 81-104 6-29 (194)
304 1g16_A RAS-related protein SEC 96.1 0.0026 9E-08 50.6 2.5 23 83-105 5-27 (170)
305 3pqc_A Probable GTP-binding pr 96.1 0.003 1E-07 51.6 2.8 23 83-105 25-47 (195)
306 1zak_A Adenylate kinase; ATP:A 96.0 0.0028 9.6E-08 54.1 2.7 26 80-105 4-29 (222)
307 1fnn_A CDC6P, cell division co 96.0 0.0039 1.3E-07 56.8 3.9 30 79-108 40-71 (389)
308 1svi_A GTP-binding protein YSX 96.0 0.003 1E-07 51.8 2.8 24 82-105 24-47 (195)
309 1zuh_A Shikimate kinase; alpha 96.0 0.0039 1.3E-07 50.7 3.5 24 81-104 7-30 (168)
310 3b1v_A Ferrous iron uptake tra 96.0 0.0037 1.3E-07 56.1 3.5 23 83-105 5-27 (272)
311 2pt5_A Shikimate kinase, SK; a 96.0 0.004 1.4E-07 50.3 3.4 22 83-104 2-23 (168)
312 3clv_A RAB5 protein, putative; 96.0 0.0036 1.2E-07 51.0 3.2 23 83-105 9-31 (208)
313 2fn4_A P23, RAS-related protei 96.0 0.003 1E-07 50.8 2.5 22 83-104 11-32 (181)
314 1r2q_A RAS-related protein RAB 96.0 0.0035 1.2E-07 49.7 2.9 22 83-104 8-29 (170)
315 3lxw_A GTPase IMAP family memb 96.0 0.004 1.4E-07 54.7 3.5 24 83-106 23-46 (247)
316 3dl0_A Adenylate kinase; phosp 96.0 0.004 1.4E-07 52.8 3.3 23 83-105 2-24 (216)
317 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0044 1.5E-07 54.8 3.7 25 80-104 3-27 (260)
318 2iyv_A Shikimate kinase, SK; t 96.0 0.0033 1.1E-07 51.8 2.7 23 82-104 3-25 (184)
319 3iby_A Ferrous iron transport 95.9 0.013 4.4E-07 51.9 6.7 23 83-105 3-25 (256)
320 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0037 1.3E-07 50.7 2.9 23 83-105 6-28 (189)
321 2qby_A CDC6 homolog 1, cell di 95.9 0.003 1E-07 57.2 2.6 31 79-109 43-73 (386)
322 3bc1_A RAS-related protein RAB 95.9 0.0037 1.2E-07 50.8 2.9 22 83-104 13-34 (195)
323 2cxx_A Probable GTP-binding pr 95.9 0.0037 1.3E-07 50.8 2.9 23 83-105 3-25 (190)
324 2hxs_A RAB-26, RAS-related pro 95.9 0.0044 1.5E-07 49.9 3.2 23 83-105 8-30 (178)
325 2oil_A CATX-8, RAS-related pro 95.9 0.0038 1.3E-07 51.3 2.9 23 83-105 27-49 (193)
326 1upt_A ARL1, ADP-ribosylation 95.9 0.0044 1.5E-07 49.4 3.1 23 82-104 8-30 (171)
327 3t1o_A Gliding protein MGLA; G 95.9 0.0049 1.7E-07 50.2 3.4 24 83-106 16-39 (198)
328 2a9k_A RAS-related protein RAL 95.9 0.0041 1.4E-07 50.2 2.9 22 83-104 20-41 (187)
329 1moz_A ARL1, ADP-ribosylation 95.9 0.0026 9.1E-08 51.5 1.7 24 80-103 17-40 (183)
330 2e87_A Hypothetical protein PH 95.9 0.0039 1.3E-07 57.7 3.0 26 80-105 166-191 (357)
331 1ko7_A HPR kinase/phosphatase; 95.8 0.0073 2.5E-07 55.8 4.8 35 68-103 132-166 (314)
332 1uj2_A Uridine-cytidine kinase 95.8 0.0047 1.6E-07 54.1 3.3 23 82-104 23-45 (252)
333 1r8s_A ADP-ribosylation factor 95.8 0.0044 1.5E-07 49.2 2.9 21 83-103 2-22 (164)
334 2y8e_A RAB-protein 6, GH09086P 95.8 0.0038 1.3E-07 50.1 2.5 22 83-104 16-37 (179)
335 2g6b_A RAS-related protein RAB 95.8 0.0044 1.5E-07 49.9 2.9 23 83-105 12-34 (180)
336 1z0f_A RAB14, member RAS oncog 95.8 0.0049 1.7E-07 49.4 3.1 23 83-105 17-39 (179)
337 3con_A GTPase NRAS; structural 95.8 0.005 1.7E-07 50.4 3.1 23 83-105 23-45 (190)
338 3tlx_A Adenylate kinase 2; str 95.8 0.0058 2E-07 53.5 3.7 25 80-104 28-52 (243)
339 2efe_B Small GTP-binding prote 95.8 0.0048 1.6E-07 49.8 2.9 23 83-105 14-36 (181)
340 3iev_A GTP-binding protein ERA 95.8 0.0052 1.8E-07 55.9 3.4 24 82-105 11-34 (308)
341 1jbk_A CLPB protein; beta barr 95.8 0.0063 2.2E-07 49.0 3.6 28 79-106 41-68 (195)
342 1wf3_A GTP-binding protein; GT 95.8 0.0052 1.8E-07 55.9 3.4 23 83-105 9-31 (301)
343 2grj_A Dephospho-COA kinase; T 95.8 0.0055 1.9E-07 52.2 3.3 24 81-104 12-35 (192)
344 1a7j_A Phosphoribulokinase; tr 95.7 0.0031 1E-07 57.2 1.7 26 80-105 4-29 (290)
345 2bov_A RAla, RAS-related prote 95.7 0.0053 1.8E-07 50.7 2.9 22 83-104 16-37 (206)
346 2bme_A RAB4A, RAS-related prot 95.7 0.0047 1.6E-07 50.2 2.5 23 83-105 12-34 (186)
347 1nrj_B SR-beta, signal recogni 95.7 0.0057 2E-07 51.4 3.1 23 83-105 14-36 (218)
348 1vg8_A RAS-related protein RAB 95.7 0.006 2.1E-07 50.5 3.2 23 83-105 10-32 (207)
349 3tkl_A RAS-related protein RAB 95.7 0.007 2.4E-07 49.5 3.5 23 83-105 18-40 (196)
350 2xb4_A Adenylate kinase; ATP-b 95.7 0.0064 2.2E-07 52.3 3.4 23 83-105 2-24 (223)
351 1ksh_A ARF-like protein 2; sma 95.6 0.0064 2.2E-07 49.6 3.2 27 79-105 16-42 (186)
352 2gf9_A RAS-related protein RAB 95.6 0.0056 1.9E-07 50.2 2.9 23 83-105 24-46 (189)
353 3t5d_A Septin-7; GTP-binding p 95.6 0.0047 1.6E-07 54.9 2.5 23 83-105 10-32 (274)
354 2xtp_A GTPase IMAP family memb 95.6 0.0059 2E-07 53.3 3.1 23 83-105 24-46 (260)
355 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.0059 2E-07 49.3 2.9 22 83-104 7-28 (186)
356 2f6r_A COA synthase, bifunctio 95.6 0.0057 2E-07 54.9 3.0 23 81-103 75-97 (281)
357 3kkq_A RAS-related protein M-R 95.6 0.0085 2.9E-07 48.6 3.8 22 83-104 20-41 (183)
358 1zbd_A Rabphilin-3A; G protein 95.6 0.0067 2.3E-07 50.3 3.2 23 83-105 10-32 (203)
359 1l8q_A Chromosomal replication 95.6 0.0037 1.2E-07 56.5 1.7 29 80-108 36-64 (324)
360 3cbq_A GTP-binding protein REM 95.6 0.0052 1.8E-07 51.3 2.5 22 83-104 25-46 (195)
361 2gf0_A GTP-binding protein DI- 95.6 0.0054 1.8E-07 50.4 2.5 22 83-104 10-31 (199)
362 2fg5_A RAB-22B, RAS-related pr 95.6 0.0055 1.9E-07 50.6 2.5 23 83-105 25-47 (192)
363 3be4_A Adenylate kinase; malar 95.5 0.0065 2.2E-07 51.9 3.0 26 80-105 4-29 (217)
364 4dhe_A Probable GTP-binding pr 95.5 0.0036 1.2E-07 52.7 1.3 24 82-105 30-53 (223)
365 1z06_A RAS-related protein RAB 95.5 0.0066 2.3E-07 49.8 2.9 22 83-104 22-43 (189)
366 1jwy_B Dynamin A GTPase domain 95.5 0.0065 2.2E-07 54.4 3.1 24 83-106 26-49 (315)
367 1m7b_A RND3/RHOE small GTP-bin 95.5 0.0063 2.2E-07 49.8 2.7 22 83-104 9-30 (184)
368 4bas_A ADP-ribosylation factor 95.5 0.0073 2.5E-07 49.5 3.1 23 82-104 18-40 (199)
369 2il1_A RAB12; G-protein, GDP, 95.5 0.0067 2.3E-07 50.2 2.8 23 83-105 28-50 (192)
370 1x3s_A RAS-related protein RAB 95.5 0.0077 2.6E-07 49.1 3.1 23 83-105 17-39 (195)
371 2wsm_A Hydrogenase expression/ 95.5 0.0068 2.3E-07 51.1 2.8 24 82-105 31-54 (221)
372 3cph_A RAS-related protein SEC 95.5 0.0071 2.4E-07 50.3 2.9 24 82-105 21-44 (213)
373 2a5j_A RAS-related protein RAB 95.5 0.0079 2.7E-07 49.5 3.1 23 83-105 23-45 (191)
374 2qu8_A Putative nucleolar GTP- 95.4 0.0079 2.7E-07 51.3 3.2 24 82-105 30-53 (228)
375 3t5g_A GTP-binding protein RHE 95.4 0.007 2.4E-07 49.0 2.7 21 83-103 8-28 (181)
376 3h4m_A Proteasome-activating n 95.4 0.0083 2.8E-07 52.8 3.4 28 78-105 48-75 (285)
377 1ltq_A Polynucleotide kinase; 95.4 0.0082 2.8E-07 53.4 3.4 22 82-103 3-24 (301)
378 2zts_A Putative uncharacterize 95.4 0.011 3.7E-07 50.4 4.0 25 78-102 27-51 (251)
379 1zj6_A ADP-ribosylation factor 95.4 0.008 2.7E-07 49.2 3.1 23 82-104 17-39 (187)
380 2o52_A RAS-related protein RAB 95.4 0.0073 2.5E-07 50.4 2.8 23 83-105 27-49 (200)
381 2p5s_A RAS and EF-hand domain 95.4 0.0076 2.6E-07 50.1 2.9 24 82-105 29-52 (199)
382 1zd9_A ADP-ribosylation factor 95.4 0.0076 2.6E-07 49.6 2.9 22 83-104 24-45 (188)
383 3oes_A GTPase rhebl1; small GT 95.4 0.0072 2.5E-07 50.3 2.7 24 82-105 25-48 (201)
384 2atv_A RERG, RAS-like estrogen 95.4 0.0077 2.6E-07 49.8 2.9 23 82-104 29-51 (196)
385 1ak2_A Adenylate kinase isoenz 95.4 0.01 3.5E-07 51.2 3.8 26 80-105 15-40 (233)
386 2i1q_A DNA repair and recombin 95.4 0.0089 3E-07 54.2 3.5 27 77-103 94-120 (322)
387 3a1s_A Iron(II) transport prot 95.4 0.009 3.1E-07 52.9 3.5 23 83-105 7-29 (258)
388 1sky_E F1-ATPase, F1-ATP synth 95.4 0.0031 1.1E-07 61.4 0.5 42 70-112 141-182 (473)
389 2h57_A ADP-ribosylation factor 95.4 0.0061 2.1E-07 50.1 2.2 23 83-105 23-45 (190)
390 4edh_A DTMP kinase, thymidylat 95.4 0.0098 3.4E-07 51.5 3.6 29 79-107 4-32 (213)
391 2f7s_A C25KG, RAS-related prot 95.4 0.0096 3.3E-07 49.9 3.5 23 83-105 27-49 (217)
392 3dz8_A RAS-related protein RAB 95.4 0.0074 2.5E-07 49.7 2.7 23 83-105 25-47 (191)
393 1e4v_A Adenylate kinase; trans 95.4 0.0078 2.7E-07 51.1 3.0 23 83-105 2-24 (214)
394 3a8t_A Adenylate isopentenyltr 95.4 0.011 3.7E-07 55.3 4.1 27 79-105 38-64 (339)
395 2cjw_A GTP-binding protein GEM 95.4 0.0087 3E-07 49.8 3.1 21 83-103 8-28 (192)
396 2dby_A GTP-binding protein; GD 95.4 0.0072 2.5E-07 56.9 2.9 22 83-104 3-24 (368)
397 3reg_A RHO-like small GTPase; 95.4 0.0088 3E-07 49.3 3.1 23 83-105 25-47 (194)
398 3i8s_A Ferrous iron transport 95.4 0.0082 2.8E-07 53.5 3.1 23 83-105 5-27 (274)
399 3zvl_A Bifunctional polynucleo 95.4 0.0088 3E-07 56.8 3.5 29 77-105 254-282 (416)
400 3bwd_D RAC-like GTP-binding pr 95.3 0.01 3.6E-07 47.8 3.5 24 82-105 9-32 (182)
401 2p65_A Hypothetical protein PF 95.3 0.0083 2.9E-07 48.4 2.8 28 79-106 41-68 (187)
402 2q3h_A RAS homolog gene family 95.3 0.01 3.5E-07 49.0 3.4 23 82-104 21-43 (201)
403 2bcg_Y Protein YP2, GTP-bindin 95.3 0.0073 2.5E-07 50.3 2.5 23 83-105 10-32 (206)
404 2h17_A ADP-ribosylation factor 95.3 0.0077 2.6E-07 49.1 2.6 22 83-104 23-44 (181)
405 1njg_A DNA polymerase III subu 95.3 0.011 3.9E-07 49.0 3.7 25 82-106 46-70 (250)
406 3llu_A RAS-related GTP-binding 95.3 0.01 3.5E-07 49.2 3.4 24 83-106 22-45 (196)
407 2ew1_A RAS-related protein RAB 95.3 0.0076 2.6E-07 50.8 2.5 22 83-104 28-49 (201)
408 2h92_A Cytidylate kinase; ross 95.3 0.0091 3.1E-07 50.5 3.0 25 81-105 3-27 (219)
409 3v9p_A DTMP kinase, thymidylat 95.3 0.0087 3E-07 52.6 2.9 29 78-106 22-50 (227)
410 3cnl_A YLQF, putative uncharac 95.3 0.01 3.5E-07 52.9 3.4 29 82-110 100-128 (262)
411 2iwr_A Centaurin gamma 1; ANK 95.3 0.0076 2.6E-07 48.6 2.3 22 83-104 9-30 (178)
412 2ocp_A DGK, deoxyguanosine kin 95.2 0.011 3.7E-07 51.2 3.3 26 80-105 1-26 (241)
413 1u94_A RECA protein, recombina 95.2 0.009 3.1E-07 55.9 3.0 28 78-105 60-87 (356)
414 2aka_B Dynamin-1; fusion prote 95.2 0.0091 3.1E-07 52.8 2.8 24 83-106 28-51 (299)
415 3c5c_A RAS-like protein 12; GD 95.2 0.011 3.8E-07 48.7 3.2 22 83-104 23-44 (187)
416 2j1l_A RHO-related GTP-binding 95.2 0.011 3.6E-07 50.0 3.1 22 83-104 36-57 (214)
417 2fv8_A H6, RHO-related GTP-bin 95.2 0.0095 3.3E-07 49.8 2.8 23 83-105 27-49 (207)
418 2fh5_B SR-beta, signal recogni 95.2 0.014 4.9E-07 48.7 3.8 23 83-105 9-31 (214)
419 3lv8_A DTMP kinase, thymidylat 95.1 0.011 3.9E-07 52.1 3.3 28 79-106 25-52 (236)
420 2fu5_C RAS-related protein RAB 95.1 0.0073 2.5E-07 49.0 1.9 23 83-105 10-32 (183)
421 3def_A T7I23.11 protein; chlor 95.1 0.011 3.7E-07 52.1 3.1 23 83-105 38-60 (262)
422 3d3q_A TRNA delta(2)-isopenten 95.1 0.011 3.9E-07 55.1 3.3 25 82-106 8-32 (340)
423 1gwn_A RHO-related GTP-binding 95.1 0.01 3.5E-07 50.1 2.7 23 83-105 30-52 (205)
424 4tmk_A Protein (thymidylate ki 95.1 0.013 4.4E-07 50.8 3.4 27 80-106 2-28 (213)
425 1h65_A Chloroplast outer envel 95.1 0.011 3.9E-07 52.1 3.1 23 83-105 41-63 (270)
426 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.014 4.7E-07 50.4 3.5 28 78-105 36-63 (262)
427 2b6h_A ADP-ribosylation factor 95.0 0.011 3.6E-07 49.1 2.7 23 82-104 30-52 (192)
428 3umf_A Adenylate kinase; rossm 95.0 0.011 3.9E-07 51.5 2.9 28 77-104 25-52 (217)
429 3exa_A TRNA delta(2)-isopenten 95.0 0.014 4.9E-07 54.1 3.7 25 81-105 3-27 (322)
430 2atx_A Small GTP binding prote 95.0 0.012 4E-07 48.4 2.8 22 83-104 20-41 (194)
431 2gco_A H9, RHO-related GTP-bin 95.0 0.011 3.9E-07 49.1 2.7 23 83-105 27-49 (201)
432 2qmh_A HPR kinase/phosphorylas 95.0 0.02 6.8E-07 49.9 4.3 34 70-104 24-57 (205)
433 2r62_A Cell division protease 95.0 0.0036 1.2E-07 54.8 -0.5 32 72-105 37-68 (268)
434 1p5z_B DCK, deoxycytidine kina 94.9 0.0089 3E-07 52.5 2.0 28 78-105 21-48 (263)
435 3ld9_A DTMP kinase, thymidylat 94.9 0.016 5.6E-07 50.7 3.7 28 79-106 19-46 (223)
436 1ypw_A Transitional endoplasmi 94.9 0.0048 1.6E-07 63.6 0.3 33 74-106 504-536 (806)
437 2hf9_A Probable hydrogenase ni 94.9 0.012 4.2E-07 49.7 2.7 24 82-105 39-62 (226)
438 3tmk_A Thymidylate kinase; pho 94.9 0.015 5.2E-07 50.6 3.4 29 79-107 3-31 (216)
439 3crm_A TRNA delta(2)-isopenten 94.8 0.015 5.2E-07 53.8 3.4 24 82-105 6-29 (323)
440 2yc2_C IFT27, small RAB-relate 94.8 0.0061 2.1E-07 50.3 0.6 22 83-104 22-43 (208)
441 4djt_A GTP-binding nuclear pro 94.8 0.0068 2.3E-07 50.9 0.9 23 83-105 13-35 (218)
442 2g3y_A GTP-binding protein GEM 94.8 0.018 6.2E-07 49.4 3.5 22 83-104 39-60 (211)
443 3cpj_B GTP-binding protein YPT 94.8 0.015 5.1E-07 49.3 2.9 23 83-105 15-37 (223)
444 1sxj_D Activator 1 41 kDa subu 94.7 0.0055 1.9E-07 55.3 0.1 24 83-106 60-83 (353)
445 4dcu_A GTP-binding protein ENG 94.7 0.013 4.6E-07 55.9 2.7 22 83-104 25-46 (456)
446 2hup_A RAS-related protein RAB 94.7 0.015 5.3E-07 48.5 2.8 23 83-105 31-53 (201)
447 2z4s_A Chromosomal replication 94.7 0.014 4.8E-07 55.8 2.8 25 81-105 130-154 (440)
448 2x77_A ADP-ribosylation factor 94.7 0.011 3.6E-07 48.5 1.7 22 82-103 23-44 (189)
449 4gzl_A RAS-related C3 botulinu 94.6 0.016 5.6E-07 48.4 2.7 22 82-103 31-52 (204)
450 3q3j_B RHO-related GTP-binding 94.6 0.019 6.6E-07 48.5 3.1 22 83-104 29-50 (214)
451 2v3c_C SRP54, signal recogniti 94.5 0.0054 1.8E-07 58.9 -0.5 33 76-108 92-126 (432)
452 2orw_A Thymidine kinase; TMTK, 94.5 0.022 7.4E-07 47.9 3.3 23 80-102 2-25 (184)
453 2chg_A Replication factor C sm 94.5 0.021 7E-07 47.0 3.1 23 83-105 40-62 (226)
454 3dm5_A SRP54, signal recogniti 94.5 0.018 6.3E-07 55.5 3.2 29 80-108 99-127 (443)
455 3foz_A TRNA delta(2)-isopenten 94.5 0.023 8E-07 52.5 3.7 25 81-105 10-34 (316)
456 2j0v_A RAC-like GTP-binding pr 94.4 0.018 6E-07 48.1 2.5 22 83-104 11-32 (212)
457 2v1u_A Cell division control p 94.4 0.018 6.3E-07 52.1 2.8 28 79-106 42-69 (387)
458 3n70_A Transport activator; si 94.4 0.03 1E-06 44.7 3.7 29 80-108 23-51 (145)
459 2q6t_A DNAB replication FORK h 94.1 0.026 8.8E-07 53.8 3.3 37 70-106 189-225 (444)
460 3sr0_A Adenylate kinase; phosp 94.1 0.03 1E-06 48.2 3.3 23 83-105 2-24 (206)
461 3p32_A Probable GTPase RV1496/ 94.1 0.025 8.5E-07 52.3 3.0 27 80-106 78-104 (355)
462 3r7w_A Gtpase1, GTP-binding pr 94.0 0.035 1.2E-06 50.2 3.8 25 81-105 3-27 (307)
463 3syl_A Protein CBBX; photosynt 94.0 0.031 1.1E-06 49.5 3.4 27 79-105 65-91 (309)
464 1puj_A YLQF, conserved hypothe 94.0 0.037 1.3E-06 49.8 3.8 26 81-106 120-145 (282)
465 4hlc_A DTMP kinase, thymidylat 94.0 0.035 1.2E-06 47.6 3.5 26 81-106 2-27 (205)
466 3eph_A TRNA isopentenyltransfe 93.9 0.031 1.1E-06 53.4 3.3 24 82-105 3-26 (409)
467 1xp8_A RECA protein, recombina 93.9 0.025 8.6E-07 53.1 2.6 28 77-104 70-97 (366)
468 1xwi_A SKD1 protein; VPS4B, AA 93.9 0.034 1.1E-06 50.7 3.4 27 79-105 43-69 (322)
469 3uk6_A RUVB-like 2; hexameric 93.8 0.031 1.1E-06 50.8 3.2 29 79-107 68-96 (368)
470 3th5_A RAS-related C3 botulinu 92.9 0.011 3.8E-07 49.1 0.0 23 82-104 31-53 (204)
471 2qen_A Walker-type ATPase; unk 93.7 0.04 1.4E-06 49.1 3.6 25 81-105 31-55 (350)
472 3t15_A Ribulose bisphosphate c 93.7 0.038 1.3E-06 49.6 3.3 26 80-105 35-60 (293)
473 2vhj_A Ntpase P4, P4; non- hyd 93.7 0.038 1.3E-06 51.4 3.4 29 76-104 118-146 (331)
474 2x2e_A Dynamin-1; nitration, h 93.6 0.024 8.1E-07 52.3 2.0 23 83-105 33-55 (353)
475 3l0i_B RAS-related protein RAB 93.6 0.0072 2.5E-07 50.2 -1.5 23 83-105 35-57 (199)
476 2bjv_A PSP operon transcriptio 93.6 0.06 2E-06 46.9 4.4 28 81-108 29-56 (265)
477 2hjg_A GTP-binding protein ENG 93.6 0.032 1.1E-06 53.0 2.8 23 83-105 5-27 (436)
478 1ofh_A ATP-dependent HSL prote 93.6 0.039 1.3E-06 48.5 3.2 25 81-105 50-74 (310)
479 3gj0_A GTP-binding nuclear pro 93.6 0.024 8.3E-07 47.7 1.8 22 83-104 17-39 (221)
480 1d2n_A N-ethylmaleimide-sensit 93.6 0.039 1.3E-06 48.4 3.1 27 79-105 62-88 (272)
481 2qgz_A Helicase loader, putati 93.5 0.046 1.6E-06 49.7 3.6 26 81-106 152-177 (308)
482 3tqf_A HPR(Ser) kinase; transf 93.5 0.061 2.1E-06 45.9 4.1 33 70-103 6-38 (181)
483 2qby_B CDC6 homolog 3, cell di 93.5 0.042 1.5E-06 50.0 3.4 26 80-105 44-69 (384)
484 3pvs_A Replication-associated 93.4 0.019 6.7E-07 55.1 1.0 30 78-107 45-76 (447)
485 3ec1_A YQEH GTPase; atnos1, at 93.4 0.038 1.3E-06 51.6 2.9 25 80-104 161-185 (369)
486 1wxq_A GTP-binding protein; st 93.3 0.041 1.4E-06 52.0 3.1 23 83-105 2-24 (397)
487 3eie_A Vacuolar protein sortin 93.3 0.051 1.8E-06 49.2 3.7 26 80-105 50-75 (322)
488 2qpt_A EH domain-containing pr 93.3 0.037 1.3E-06 54.5 2.8 25 81-105 65-89 (550)
489 3d8b_A Fidgetin-like protein 1 93.3 0.053 1.8E-06 50.0 3.7 27 79-105 115-141 (357)
490 1tue_A Replication protein E1; 93.3 0.034 1.2E-06 48.6 2.2 28 78-105 55-82 (212)
491 3hws_A ATP-dependent CLP prote 93.2 0.046 1.6E-06 50.2 3.2 26 80-105 50-75 (363)
492 1lnz_A SPO0B-associated GTP-bi 93.2 0.05 1.7E-06 50.5 3.3 33 72-104 149-181 (342)
493 3geh_A MNME, tRNA modification 93.1 0.03 1E-06 54.1 1.8 25 80-104 223-247 (462)
494 3pfi_A Holliday junction ATP-d 92.9 0.053 1.8E-06 48.8 3.1 24 82-105 56-79 (338)
495 3sjy_A Translation initiation 92.9 0.058 2E-06 50.6 3.4 23 83-105 10-32 (403)
496 3h2y_A GTPase family protein; 92.9 0.04 1.4E-06 51.5 2.3 25 80-104 159-183 (368)
497 2b8t_A Thymidine kinase; deoxy 92.8 0.071 2.4E-06 46.6 3.6 26 79-104 10-35 (223)
498 3gmt_A Adenylate kinase; ssgci 92.8 0.066 2.3E-06 47.2 3.4 23 82-104 9-31 (230)
499 1m8p_A Sulfate adenylyltransfe 92.8 0.061 2.1E-06 53.3 3.5 28 79-106 394-421 (573)
500 1x6v_B Bifunctional 3'-phospho 92.7 0.064 2.2E-06 53.9 3.6 26 80-105 51-76 (630)
No 1
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.2e-39 Score=298.19 Aligned_cols=143 Identities=29% Similarity=0.478 Sum_probs=129.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++||+|++.+|+.||+||
T Consensus 68 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eN 147 (306)
T 3nh6_A 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADN 147 (306)
T ss_dssp EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHH
T ss_pred ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHH
Confidence 4799999999999999999999999999999999999999999999984 899999999999999999
Q ss_pred HHhCCCC-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
|.++... ..++..+.+..+.+...+..+|.++.+.+++++.+|||||||||+|||||+.+| ++|||||||+++
T Consensus 148 i~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p------~iLlLDEPts~L 221 (306)
T 3nh6_A 148 IRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAP------GIILLDEATSAL 221 (306)
T ss_dssp HHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC------SEEEEECCSSCC
T ss_pred HHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCC------CEEEEECCcccC
Confidence 9998643 344556666666777778889989999999999999999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|..
T Consensus 222 D~~ 224 (306)
T 3nh6_A 222 DTS 224 (306)
T ss_dssp CHH
T ss_pred CHH
Confidence 863
No 2
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1e-38 Score=284.28 Aligned_cols=143 Identities=36% Similarity=0.697 Sum_probs=121.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYY 148 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~ 148 (280)
.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++|++|++++++.||+||+.++......+..
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~ 101 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYR 101 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHH
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHH
Confidence 47999999999999999999999999999999999999999999999999999999988878999999997543332333
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
..+..+.+...+..++.+..+.+++++.+|||||||||+|||||+++| ++|+||||++++|+.
T Consensus 102 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p------~lllLDEPts~LD~~ 164 (229)
T 2pze_A 102 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA------DLYLLDSPFGYLDVL 164 (229)
T ss_dssp HHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC------SEEEEESTTTTSCHH
T ss_pred HHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC------CEEEEECcccCCCHH
Confidence 333344444445555555556677788899999999999999999998 889999999999874
No 3
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=284.79 Aligned_cols=144 Identities=49% Similarity=0.821 Sum_probs=121.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYY 148 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~ 148 (280)
.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++|++|+++++..||+||+.++.........
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~ 98 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYR 98 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHH
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999988888999999987644333333
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceE
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~il 218 (280)
+....+.+...+..++.+..+.+++++.+|||||||||+|||||+.+| ++|||||||+++|+.-
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p------~lllLDEPts~LD~~~ 162 (237)
T 2cbz_A 99 SVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA------DIYLFDDPLSAVDAHV 162 (237)
T ss_dssp HHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC------SEEEEESTTTTSCHHH
T ss_pred HHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC------CEEEEeCcccccCHHH
Confidence 333333333344445555556677889999999999999999999998 8899999999999853
No 4
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-37 Score=335.25 Aligned_cols=161 Identities=30% Similarity=0.438 Sum_probs=147.5
Q ss_pred CCeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCcH
Q psy850 15 SSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGK 94 (280)
Q Consensus 15 ~~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGK 94 (280)
...|+++|++|.|+... +.++|+||||+|++|++++||||+||||
T Consensus 413 ~g~I~~~nvsF~Y~~~~-----------------------------------~~~vL~~isl~i~~G~~vaivG~sGsGK 457 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRP-----------------------------------DVPILRGMNLRVNAGQTVALVGSSGCGK 457 (1321)
T ss_dssp CCCEEEEEEEECCSSST-----------------------------------TSCSEEEEEEEECTTCEEEEEECSSSCH
T ss_pred CCcEEEEEeeeeCCCCC-----------------------------------CCceeeceEEeecCCcEEEEEecCCCcH
Confidence 44799999999997532 1357999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHHHHhCCC-CChhhHHHHHHHhhhhhhH
Q psy850 95 SALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHNILFGEP-FEPQRYYKTLYNCALNTDI 160 (280)
Q Consensus 95 STLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~l 160 (280)
|||+++|+|+++|++|+|.++| +++||+|+||+|+.|++|||.||.+ ...+++.++++.+.+..++
T Consensus 458 STll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i 537 (1321)
T 4f4c_A 458 STIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFI 537 (1321)
T ss_dssp HHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHH
Confidence 9999999999999999999998 4899999999999999999999975 4566778888888888899
Q ss_pred hhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 161 ~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
..+|.|++|.+++++.+|||||||||+|||||+++| ++|||||||+++|.
T Consensus 538 ~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~------~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 538 KTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP------KILLLDEATSALDA 587 (1321)
T ss_dssp HHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC------SEEEEESTTTTSCT
T ss_pred HcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC------CEEEEecccccCCH
Confidence 999999999999999999999999999999999999 77899999999985
No 5
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.3e-37 Score=277.09 Aligned_cols=143 Identities=31% Similarity=0.411 Sum_probs=122.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++||+|++.+++.||+||
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 102 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHH
Confidence 4799999999999999999999999999999999999999999999983 799999998887899999
Q ss_pred HHhCCCC-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++... ..++..+.+....+...+..++.+..+.+++++.+|||||||||+|||||+.+| ++|||||||+++
T Consensus 103 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p------~lllLDEPts~L 176 (247)
T 2ff7_A 103 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP------KILIFDEATSAL 176 (247)
T ss_dssp HTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC------SEEEECCCCSCC
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC------CEEEEeCCcccC
Confidence 9987432 223334444445555556667767777888889999999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|+.
T Consensus 177 D~~ 179 (247)
T 2ff7_A 177 DYE 179 (247)
T ss_dssp CHH
T ss_pred CHH
Confidence 863
No 6
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-37 Score=276.27 Aligned_cols=152 Identities=30% Similarity=0.462 Sum_probs=124.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++.||+||
T Consensus 16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en 95 (243)
T 1mv5_A 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIREN 95 (243)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHH
T ss_pred ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHH
Confidence 4799999999999999999999999999999999999999999999873 799999998887899999
Q ss_pred HHhCC-C-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 136 ILFGE-P-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 136 I~~g~-~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
+.++. . ...++..+.+....+...+..++.+..+.+++++.+|||||||||+|||||+.+| ++|+|||||++
T Consensus 96 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p------~lllLDEPts~ 169 (243)
T 1mv5_A 96 LTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP------KILMLDEATAS 169 (243)
T ss_dssp TTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC------SEEEEECCSCS
T ss_pred HhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC------CEEEEECCccc
Confidence 99873 2 2223344444444555555556666777778888999999999999999999998 88999999999
Q ss_pred CCceEEEeehhhh
Q psy850 214 LQSILLMEEVNVY 226 (280)
Q Consensus 214 l~~illlDE~~~~ 226 (280)
+|+.-.-.-.+++
T Consensus 170 LD~~~~~~i~~~l 182 (243)
T 1mv5_A 170 LDSESESMVQKAL 182 (243)
T ss_dssp SCSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9875443333333
No 7
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.4e-36 Score=277.38 Aligned_cols=144 Identities=32% Similarity=0.426 Sum_probs=119.2
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|++|||+|++||+++|+|||||||||||++|+|+++|++|+|.++|. ++||+|++.+++.||+||
T Consensus 33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 112 (271)
T 2ixe_A 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN 112 (271)
T ss_dssp CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHH
T ss_pred eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHH
Confidence 4799999999999999999999999999999999999999999999983 799999998887899999
Q ss_pred HHhCCCCC-h-hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 136 ILFGEPFE-P-QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 136 I~~g~~~~-~-~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
+.++.... . ...........+...+..++.+..+.+++++.+|||||||||+|||||+.+| ++|||||||++
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p------~lllLDEPts~ 186 (271)
T 2ixe_A 113 IAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP------RLLILDNATSA 186 (271)
T ss_dssp HHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC------SEEEEESTTTT
T ss_pred HhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC------CEEEEECCccC
Confidence 99875321 1 2222223333344445556555666677889999999999999999999998 88999999999
Q ss_pred CCceE
Q psy850 214 LQSIL 218 (280)
Q Consensus 214 l~~il 218 (280)
+|..-
T Consensus 187 LD~~~ 191 (271)
T 2ixe_A 187 LDAGN 191 (271)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 98744
No 8
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.2e-36 Score=303.42 Aligned_cols=143 Identities=35% Similarity=0.496 Sum_probs=129.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++||+|++++++.|++||
T Consensus 355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 434 (578)
T 4a82_A 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKEN 434 (578)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHH
Confidence 479999999999999999999999999999999999999999999998 3899999999999999999
Q ss_pred HHhCCCC-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.+. ..++..+.+..+.+...+..+|.++.+.+++++.+|||||||||+|||||+++| ++|+|||||+++
T Consensus 435 i~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p------~illlDEpts~L 508 (578)
T 4a82_A 435 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP------PILILDEATSAL 508 (578)
T ss_dssp HGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC------SEEEEESTTTTC
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCC------CEEEEECccccC
Confidence 9998643 334455666666667778889999999999999999999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|+.
T Consensus 509 D~~ 511 (578)
T 4a82_A 509 DLE 511 (578)
T ss_dssp CHH
T ss_pred CHH
Confidence 863
No 9
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-36 Score=303.11 Aligned_cols=142 Identities=29% Similarity=0.414 Sum_probs=129.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++||+|++++++.|++||
T Consensus 357 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 436 (587)
T 3qf4_A 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKEN 436 (587)
T ss_dssp CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHH
Confidence 4799999999999999999999999999999999999999999999983 899999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.+ ...++..+.++.+.+...+..+|.++.+.+++++.+|||||||||+|||||+++| ++|+|||||+++
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p------~illlDEpts~L 510 (587)
T 3qf4_A 437 LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP------KVLILDDCTSSV 510 (587)
T ss_dssp HTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC------SEEEEESCCTTS
T ss_pred HhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC------CEEEEECCcccC
Confidence 999864 3344556666667777788889999999999999999999999999999999998 889999999999
Q ss_pred Cc
Q psy850 215 QS 216 (280)
Q Consensus 215 ~~ 216 (280)
|+
T Consensus 511 D~ 512 (587)
T 3qf4_A 511 DP 512 (587)
T ss_dssp CH
T ss_pred CH
Confidence 86
No 10
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.8e-36 Score=271.57 Aligned_cols=142 Identities=31% Similarity=0.489 Sum_probs=118.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|++|||+|++|++++|+||||||||||+++|+|+++| +|+|.++|. ++|++|++.+++.||++|
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 112 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYN 112 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHH
Confidence 479999999999999999999999999999999999987 899999883 799999998888899999
Q ss_pred HHhCCCC-ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEPF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++... ..++..+.+..+.+...+..++.+..+.+++++.+|||||||||+|||||+.+| ++|||||||+++
T Consensus 113 l~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p------~lllLDEPts~L 186 (260)
T 2ghi_A 113 ILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP------KIVIFDEATSSL 186 (260)
T ss_dssp HHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC------SEEEEECCCCTT
T ss_pred HhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC------CEEEEECccccC
Confidence 9987532 222333333444444444456666666677888999999999999999999998 889999999999
Q ss_pred Cce
Q psy850 215 QSI 217 (280)
Q Consensus 215 ~~i 217 (280)
|+.
T Consensus 187 D~~ 189 (260)
T 2ghi_A 187 DSK 189 (260)
T ss_dssp CHH
T ss_pred CHH
Confidence 863
No 11
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.8e-36 Score=298.00 Aligned_cols=143 Identities=34% Similarity=0.482 Sum_probs=129.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++||+|++.+++.|++||
T Consensus 357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 436 (582)
T 3b5x_A 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN 436 (582)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHH
Confidence 479999999999999999999999999999999999999999999998 3899999999998999999
Q ss_pred HHhCC--CCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 136 ILFGE--PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 136 I~~g~--~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
+.++. ....++..+.++.+.+...+..+|.+..+.+++++.+|||||||||+|||||+++| ++|+|||||++
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p------~illlDEpts~ 510 (582)
T 3b5x_A 437 IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA------PVLILDEATSA 510 (582)
T ss_pred HhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC------CEEEEECcccc
Confidence 99986 23345566666667777788889999999999999999999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|+.
T Consensus 511 LD~~ 514 (582)
T 3b5x_A 511 LDTE 514 (582)
T ss_pred CCHH
Confidence 9874
No 12
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.8e-36 Score=323.14 Aligned_cols=161 Identities=28% Similarity=0.393 Sum_probs=145.2
Q ss_pred CCeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCcH
Q psy850 15 SSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGK 94 (280)
Q Consensus 15 ~~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGK 94 (280)
...|+++|++|.|+... ..++|+||||+|++||.+||||||||||
T Consensus 1074 ~g~I~f~nVsf~Y~~~~-----------------------------------~~~VL~~isl~I~~Ge~vaIVG~SGsGK 1118 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERP-----------------------------------EIEILKGLSFSVEPGQTLALVGPSGCGK 1118 (1321)
T ss_dssp CCCEEEEEEEECCTTSC-----------------------------------SSCSEEEEEEEECTTCEEEEECSTTSST
T ss_pred CCeEEEEEEEEeCCCCC-----------------------------------CCccccceeEEECCCCEEEEECCCCChH
Confidence 34799999999996532 1348999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHHHHhCCC---CChhhHHHHHHHhhhhh
Q psy850 95 SALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHNILFGEP---FEPQRYYKTLYNCALNT 158 (280)
Q Consensus 95 STLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~enI~~g~~---~~~~~~~~~~~~~~l~~ 158 (280)
|||+++|.|+++|++|+|.++|. ++||||+|.+|++|++|||.+|.. ...++..++++.+.+..
T Consensus 1119 STL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~ 1198 (1321)
T 4f4c_A 1119 STVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHN 1198 (1321)
T ss_dssp TSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChH
Confidence 99999999999999999999983 899999999999999999999853 34566778888888888
Q ss_pred hHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 159 DIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 159 ~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.+..+|.|+++.+++++.+||||||||++|||||+++| ++|||||||+++|.
T Consensus 1199 ~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~------~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A 1199 FIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNP------KILLLDEATSALDT 1250 (1321)
T ss_dssp HHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCC------SEEEEESCCCSTTS
T ss_pred HHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCC------CEEEEeCccccCCH
Confidence 89999999999999999999999999999999999998 78999999999986
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.1e-36 Score=268.67 Aligned_cols=139 Identities=27% Similarity=0.287 Sum_probs=109.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCCCCC-CC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEAWIT-ND 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~~l~-~~ 130 (280)
.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++||||++.++ ..
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 4899999999999999999999999999999999999999999999982 89999998776 46
Q ss_pred cHHHHHHhCCC------CChhhHHHHHHHhhhhhhHhhCCCCCchh-hccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 131 TLRHNILFGEP------FEPQRYYKTLYNCALNTDIHILPGGDQTE-IGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 131 Tv~enI~~g~~------~~~~~~~~~~~~~~l~~~l~~l~~g~~~~-i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
||+||+.++.. .......+.+. ..+..+ +.... .++++.+|||||||||+|||||+++| +
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p------~ 165 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRAL-----ECLKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNP------P 165 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHH-----HHHHHT--TCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCC------S
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHH-----HHHHHC--CCChhhhhCChhhCCHHHHHHHHHHHHHHcCC------C
Confidence 99999987421 11111111111 112221 12222 36778899999999999999999998 8
Q ss_pred hhhhccccCCCCceEEE
Q psy850 204 FLVLLCPCVSLQSILLM 220 (280)
Q Consensus 204 ll~ldep~~~l~~illl 220 (280)
+|||||||+++|+.-..
T Consensus 166 llllDEPts~LD~~~~~ 182 (235)
T 3tif_A 166 IILADQPTWALDSKTGE 182 (235)
T ss_dssp EEEEESTTTTSCHHHHH
T ss_pred EEEEeCCcccCCHHHHH
Confidence 89999999999864433
No 14
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-36 Score=303.63 Aligned_cols=142 Identities=25% Similarity=0.418 Sum_probs=127.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++||+|++++++.|++||
T Consensus 369 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~en 448 (598)
T 3qf4_B 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKEN 448 (598)
T ss_dssp CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHH
T ss_pred ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHH
Confidence 479999999999999999999999999999999999999999999998 3899999999999999999
Q ss_pred HHhCCC-CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCC
Q psy850 136 ILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214 (280)
Q Consensus 136 I~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l 214 (280)
+.++.. ...++..+.+..+.+...+..+|.+..+.+++++.+|||||||||+|||||+++| ++|+|||||+++
T Consensus 449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p------~illlDEpts~L 522 (598)
T 3qf4_B 449 LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP------KILILDEATSNV 522 (598)
T ss_dssp HHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC------SEEEECCCCTTC
T ss_pred HhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC------CEEEEECCccCC
Confidence 999864 3344555555555666778888999999999999999999999999999999998 889999999999
Q ss_pred Cc
Q psy850 215 QS 216 (280)
Q Consensus 215 ~~ 216 (280)
|+
T Consensus 523 D~ 524 (598)
T 3qf4_B 523 DT 524 (598)
T ss_dssp CH
T ss_pred CH
Confidence 86
No 15
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=8.6e-36 Score=297.26 Aligned_cols=143 Identities=34% Similarity=0.453 Sum_probs=129.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++||+|++.+++.|++||
T Consensus 357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 436 (582)
T 3b60_A 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 436 (582)
T ss_dssp CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHH
Confidence 4799999999999999999999999999999999999999999999983 899999999998999999
Q ss_pred HHhCC--CCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 136 ILFGE--PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 136 I~~g~--~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
+.++. ....++..+.++.+.+...+..+|.+..+.+++++.+|||||||||+|||||+++| ++|+|||||++
T Consensus 437 i~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p------~illlDEpts~ 510 (582)
T 3b60_A 437 IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS------PILILDEATSA 510 (582)
T ss_dssp HHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC------SEEEEETTTSS
T ss_pred HhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC------CEEEEECcccc
Confidence 99986 23445566666667777788889999999999999999999999999999999998 78999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|+.
T Consensus 511 LD~~ 514 (582)
T 3b60_A 511 LDTE 514 (582)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 9863
No 16
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.7e-36 Score=277.35 Aligned_cols=144 Identities=35% Similarity=0.686 Sum_probs=116.4
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhh
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQR 146 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~ 146 (280)
.+.+|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++|++|++.+++.||+||+. +......+
T Consensus 50 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~~~~ 128 (290)
T 2bbs_A 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYR 128 (290)
T ss_dssp CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHH-TTCCCHHH
T ss_pred CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhh-CcccchHH
Confidence 35689999999999999999999999999999999999999999999999999999999888789999998 54332222
Q ss_pred HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 147 YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 147 ~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
....+..+.+...+..++.+..+.+++++.+|||||||||+|||||+.+| ++|+||||++++|+.
T Consensus 129 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p------~lllLDEPts~LD~~ 193 (290)
T 2bbs_A 129 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA------DLYLLDSPFGYLDVL 193 (290)
T ss_dssp HHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC------SEEEEESTTTTCCHH
T ss_pred HHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC------CEEEEECCcccCCHH
Confidence 22333333344445555555555667778899999999999999999998 889999999999873
No 17
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-35 Score=297.21 Aligned_cols=143 Identities=31% Similarity=0.450 Sum_probs=128.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++||+|++.+++.|++||
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 437 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAEN 437 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHH
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHH
Confidence 4799999999999999999999999999999999999999999999983 899999999998999999
Q ss_pred HHhCCCC----ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 136 ILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 136 I~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
+.++... ..++..+.++.+.+...+..+|.+..+.+++++.+|||||||||+|||||+++| ++|+|||||
T Consensus 438 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p------~illlDEpt 511 (595)
T 2yl4_A 438 IAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP------KILLLDEAT 511 (595)
T ss_dssp HHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCC------SEEEEECCC
T ss_pred HhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCC------CEEEEECcc
Confidence 9998642 344556666667777778888989999999999999999999999999999998 889999999
Q ss_pred CCCCce
Q psy850 212 VSLQSI 217 (280)
Q Consensus 212 ~~l~~i 217 (280)
+++|+.
T Consensus 512 s~LD~~ 517 (595)
T 2yl4_A 512 SALDAE 517 (595)
T ss_dssp SSCCHH
T ss_pred cCCCHH
Confidence 999863
No 18
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=9e-36 Score=282.41 Aligned_cols=136 Identities=29% Similarity=0.389 Sum_probs=111.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------------EEEEecCCCCC-CCcH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------------CAYVSQEAWIT-NDTL 132 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------------ig~v~Q~~~l~-~~Tv 132 (280)
.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+ +|||||++.++ ++||
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV 97 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV 97 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCH
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCH
Confidence 4799999999999999999999999999999999999999999999873 79999998766 6799
Q ss_pred HHHHHhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 133 RHNILFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 133 ~enI~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
+|||.|+.... .....+.+.+. ++.+ +.....++++.+|||||||||+|||||+.+| ++|||||
T Consensus 98 ~eni~~~l~~~~~~~~~~~~~v~~~-----l~~~--gL~~~~~r~~~~LSGGq~QRValArAL~~~P------~lLLLDE 164 (359)
T 3fvq_A 98 YRNIAYGLGNGKGRTAQERQRIEAM-----LELT--GISELAGRYPHELSGGQQQRAALARALAPDP------ELILLDE 164 (359)
T ss_dssp HHHHHTTSTTSSCCSHHHHHHHHHH-----HHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------SEEEEES
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHH-----HHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEeC
Confidence 99999985432 11222222211 1111 2334567788999999999999999999998 8899999
Q ss_pred ccCCCCce
Q psy850 210 PCVSLQSI 217 (280)
Q Consensus 210 p~~~l~~i 217 (280)
|++++|..
T Consensus 165 Pts~LD~~ 172 (359)
T 3fvq_A 165 PFSALDEQ 172 (359)
T ss_dssp TTTTSCHH
T ss_pred CcccCCHH
Confidence 99999874
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.1e-35 Score=272.35 Aligned_cols=137 Identities=26% Similarity=0.318 Sum_probs=110.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------------EEEEecCC--CCCCCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------------CAYVSQEA--WITNDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------------ig~v~Q~~--~l~~~T 131 (280)
.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ +|||||++ .++..|
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 3799999999999999999999999999999999999999999999883 79999987 456789
Q ss_pred HHHHHHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
|++|+.++... ......+.+.. .+..+ +.....++++.+|||||||||+|||||+.+| ++||||
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~-----~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P------~lLlLD 168 (275)
T 3gfo_A 102 VYQDVSFGAVNMKLPEDEIRKRVDN-----ALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP------KVLILD 168 (275)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHH-----HHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC------SEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH-----HHHHc--CCchhhcCCcccCCHHHHHHHHHHHHHHcCC------CEEEEE
Confidence 99999886321 12222222211 12222 2334456778899999999999999999998 889999
Q ss_pred cccCCCCceE
Q psy850 209 CPCVSLQSIL 218 (280)
Q Consensus 209 ep~~~l~~il 218 (280)
|||+++|+.-
T Consensus 169 EPts~LD~~~ 178 (275)
T 3gfo_A 169 EPTAGLDPMG 178 (275)
T ss_dssp CTTTTCCHHH
T ss_pred CccccCCHHH
Confidence 9999998743
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.4e-35 Score=281.71 Aligned_cols=136 Identities=29% Similarity=0.366 Sum_probs=110.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------------EEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------------ig~v~Q~~~l~-~~T 131 (280)
.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ +|||||++.++ ..|
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T 121 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence 4899999999999999999999999999999999999999999999883 79999998766 569
Q ss_pred HHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 132 LRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 132 v~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
|+||+.++.. .......+.+.+ .+..+ +.....++++.+|||||||||+|||||+.+| ++||||
T Consensus 122 V~env~~~~~~~~~~~~~~~~~v~~-----lL~~v--gL~~~~~~~~~~LSGGqkQRVaIArAL~~~P------~lLLlD 188 (366)
T 3tui_C 122 VFGNVALPLELDNTPKDEVKRRVTE-----LLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP------KVLLCD 188 (366)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHH-----HHHHH--TCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC------SEEEEE
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHH-----HHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEEE
Confidence 9999988632 111121222211 11111 2334567889999999999999999999998 889999
Q ss_pred cccCCCCce
Q psy850 209 CPCVSLQSI 217 (280)
Q Consensus 209 ep~~~l~~i 217 (280)
|||+++|+.
T Consensus 189 EPTs~LD~~ 197 (366)
T 3tui_C 189 QATSALDPA 197 (366)
T ss_dssp STTTTSCHH
T ss_pred CCCccCCHH
Confidence 999999863
No 21
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=284.36 Aligned_cols=141 Identities=32% Similarity=0.454 Sum_probs=121.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~en 135 (280)
.+|++|||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+ ++||||++.+++.||++|
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~en 113 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN 113 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHH
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHH
Confidence 47999999999999999999999999999999999998 8999999983 799999999988999999
Q ss_pred HHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 136 ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 136 I~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+.+......++..+.+..+.+.......+....+.+++.+.+|||||||||+|||||+.+| ++||||||++++|
T Consensus 114 l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P------~lLLLDEPts~LD 187 (390)
T 3gd7_A 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA------KILLLDEPSAHLD 187 (390)
T ss_dssp HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC------CEEEEESHHHHSC
T ss_pred hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC------CEEEEeCCccCCC
Confidence 9865444444555566666666666666666666777777889999999999999999998 8899999999997
Q ss_pred c
Q psy850 216 S 216 (280)
Q Consensus 216 ~ 216 (280)
.
T Consensus 188 ~ 188 (390)
T 3gd7_A 188 P 188 (390)
T ss_dssp H
T ss_pred H
Confidence 5
No 22
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-35 Score=283.80 Aligned_cols=136 Identities=26% Similarity=0.316 Sum_probs=110.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+ ++||||++.++ ++||+|||
T Consensus 17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni 96 (381)
T 3rlf_A 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENM 96 (381)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHH
T ss_pred EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999984 89999998766 67999999
Q ss_pred HhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.|+.. .......+.+.+ .++.+ +.....++++.+|||||||||+|||||+.+| ++||||||+++
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~-----~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P------~lLLLDEPts~ 163 (381)
T 3rlf_A 97 SFGLKLAGAKKEVINQRVNQ-----VAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEP------SVFLLDEPLSN 163 (381)
T ss_dssp THHHHHTTCCHHHHHHHHHH-----HHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC------SEEEEESTTTT
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHcCC------CEEEEECCCcC
Confidence 98632 112222222221 12222 2344567788999999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|..
T Consensus 164 LD~~ 167 (381)
T 3rlf_A 164 LDAA 167 (381)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9854
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.4e-35 Score=266.28 Aligned_cols=136 Identities=25% Similarity=0.275 Sum_probs=108.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCC-CCCcHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWI-TNDTLRH 134 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l-~~~Tv~e 134 (280)
.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ ++|++|++.+ +..||+|
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE 104 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence 4799999999999999999999999999999999999999999999984 7999999765 5789999
Q ss_pred HHHhCCCCC-hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhc------CCchhhhhhhhhh
Q psy850 135 NILFGEPFE-PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYS------NSFEQQTFHFLVL 207 (280)
Q Consensus 135 nI~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~------~p~i~~~~~ll~l 207 (280)
|+.++.... .....+.+... +..+ +.....++++.+|||||||||+|||||++ +| ++|||
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p------~lLll 171 (266)
T 4g1u_C 105 VIQMGRAPYGGSQDRQALQQV-----MAQT--DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTP------RWLFL 171 (266)
T ss_dssp HHHGGGTTSCSTTHHHHHHHH-----HHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCC------EEEEE
T ss_pred HHHhhhhhcCcHHHHHHHHHH-----HHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC------CEEEE
Confidence 999875321 11111222111 1111 12233456778899999999999999999 87 88999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
||||+++|+.
T Consensus 172 DEPts~LD~~ 181 (266)
T 4g1u_C 172 DEPTSALDLY 181 (266)
T ss_dssp CCCCSSCCHH
T ss_pred eCccccCCHH
Confidence 9999999864
No 24
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.5e-35 Score=261.45 Aligned_cols=137 Identities=29% Similarity=0.444 Sum_probs=108.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCC-CCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWIT-NDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~Tv~ 133 (280)
.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ ++|+||++.++ ..||+
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 99 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVY 99 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHH
Confidence 4799999999999999999999999999999999999999999999872 89999998776 45999
Q ss_pred HHHHhCCCC--ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 134 HNILFGEPF--EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 134 enI~~g~~~--~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
||+.++... ......+.+... +..+. +.....++++.+|||||||||+|||||+.+| ++|+|||||
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~-----l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p------~lllLDEPt 167 (240)
T 1ji0_A 100 ENLMMGAYNRKDKEGIKRDLEWI-----FSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRP------KLLMMDEPS 167 (240)
T ss_dssp HHHHGGGTTCCCSSHHHHHHHHH-----HHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC------SEEEEECTT
T ss_pred HHHHHhhhcCCCHHHHHHHHHHH-----HHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEcCCc
Confidence 999986411 111212222211 11110 0122346678899999999999999999998 889999999
Q ss_pred CCCCce
Q psy850 212 VSLQSI 217 (280)
Q Consensus 212 ~~l~~i 217 (280)
+++|+.
T Consensus 168 s~LD~~ 173 (240)
T 1ji0_A 168 LGLAPI 173 (240)
T ss_dssp TTCCHH
T ss_pred ccCCHH
Confidence 999874
No 25
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.7e-35 Score=267.80 Aligned_cols=141 Identities=25% Similarity=0.243 Sum_probs=109.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------EEEEecCCCCC-CCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------CAYVSQEAWIT-NDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~Tv~ 133 (280)
.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ ++||+|++.++ ..||+
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 100 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVL 100 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHH
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHH
Confidence 4799999999999999999999999999999999999999999999872 79999998765 57999
Q ss_pred HHHHhCCCC-Chhh----------HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhh
Q psy850 134 HNILFGEPF-EPQR----------YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTF 202 (280)
Q Consensus 134 enI~~g~~~-~~~~----------~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~ 202 (280)
||+.++... .... .............+..+ +.....++++.+|||||||||+|||||+.+|
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p------ 172 (257)
T 1g6h_A 101 ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNP------ 172 (257)
T ss_dssp HHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc--CCchhhCCCchhCCHHHHHHHHHHHHHHcCC------
Confidence 999986422 0000 00000000111222222 3344567788899999999999999999998
Q ss_pred hhhhhccccCCCCce
Q psy850 203 HFLVLLCPCVSLQSI 217 (280)
Q Consensus 203 ~ll~ldep~~~l~~i 217 (280)
++|||||||+++|+.
T Consensus 173 ~lllLDEPts~LD~~ 187 (257)
T 1g6h_A 173 KMIVMDEPIAGVAPG 187 (257)
T ss_dssp SEEEEESTTTTCCHH
T ss_pred CEEEEeCCccCCCHH
Confidence 889999999999874
No 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.3e-35 Score=266.12 Aligned_cols=137 Identities=26% Similarity=0.300 Sum_probs=108.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------------EEEEecCCCCC-CCcH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------------CAYVSQEAWIT-NDTL 132 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------------ig~v~Q~~~l~-~~Tv 132 (280)
.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ++||||++.++ ..||
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 117 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV 117 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCH
Confidence 4799999999999999999999999999999999999999999999872 79999998766 5699
Q ss_pred HHHHHhCC----CCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhc
Q psy850 133 RHNILFGE----PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLL 208 (280)
Q Consensus 133 ~enI~~g~----~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ld 208 (280)
+||+.++. ........+.+. ..++.+ +.....++++.+|||||||||+|||||+.+| ++||||
T Consensus 118 ~e~l~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p------~lllLD 184 (263)
T 2olj_A 118 LNNITLAPMKVRKWPREKAEAKAM-----ELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEP------KIMLFD 184 (263)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHH-----HHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------SEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHCCC------CEEEEe
Confidence 99998742 111111111111 112222 2334456778899999999999999999998 889999
Q ss_pred cccCCCCceE
Q psy850 209 CPCVSLQSIL 218 (280)
Q Consensus 209 ep~~~l~~il 218 (280)
|||+++|+..
T Consensus 185 EPts~LD~~~ 194 (263)
T 2olj_A 185 EPTSALDPEM 194 (263)
T ss_dssp STTTTSCHHH
T ss_pred CCcccCCHHH
Confidence 9999998743
No 27
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.1e-35 Score=262.15 Aligned_cols=138 Identities=31% Similarity=0.323 Sum_probs=108.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCCCCC-CC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEAWIT-ND 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~~l~-~~ 130 (280)
.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ ++|+||++.++ ..
T Consensus 18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (224)
T 2pcj_A 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL 97 (224)
T ss_dssp EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCC
Confidence 4799999999999999999999999999999999999999999999871 79999998665 57
Q ss_pred cHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 131 TLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 131 Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
||+||+.++.. .......+.+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++|+|
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGq~qrv~laral~~~p------~lllL 164 (224)
T 2pcj_A 98 TALENVIVPMLKMGKPKKEAKERGE-----YLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEP------ILLFA 164 (224)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHH-----HHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHTTTCC------SEEEE
T ss_pred CHHHHHHhHHHHcCCCHHHHHHHHH-----HHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHcCC------CEEEE
Confidence 99999987531 11111111111 122222 2233456778899999999999999999998 88999
Q ss_pred ccccCCCCceEE
Q psy850 208 LCPCVSLQSILL 219 (280)
Q Consensus 208 dep~~~l~~ill 219 (280)
||||+++|+.-.
T Consensus 165 DEPt~~LD~~~~ 176 (224)
T 2pcj_A 165 DEPTGNLDSANT 176 (224)
T ss_dssp ESTTTTCCHHHH
T ss_pred eCCCCCCCHHHH
Confidence 999999987543
No 28
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7.3e-35 Score=276.22 Aligned_cols=136 Identities=26% Similarity=0.312 Sum_probs=110.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+ ++||||++.++ ++||+||+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 96 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENI 96 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHH
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999883 89999998766 67999999
Q ss_pred HhCCCCCh---hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPFEP---QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~~~---~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.|+..... ....+.+. ..++.+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 97 ~~~~~~~~~~~~~~~~~v~-----~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~~P------~lLLLDEP~s~ 163 (359)
T 2yyz_A 97 AFPLRARRISKDEVEKRVV-----EIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQP------KVLLFDEPLSN 163 (359)
T ss_dssp HGGGSSSCSHHHHTTHHHH-----HHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------SEEEEESTTTT
T ss_pred HHHHHhcCCCHHHHHHHHH-----HHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEECCccc
Confidence 99753221 11111111 122222 2334556788899999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|..
T Consensus 164 LD~~ 167 (359)
T 2yyz_A 164 LDAN 167 (359)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9864
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-34 Score=262.68 Aligned_cols=136 Identities=26% Similarity=0.320 Sum_probs=108.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------------------------EEEEe
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------------------------CAYVS 122 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------------------------ig~v~ 122 (280)
.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|||
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 99 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF 99 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEe
Confidence 4799999999999999999999999999999999999999999999861 78999
Q ss_pred cCCCCC-CCcHHHHHHhCC----CCChhhHHHHHHHhhhhhhHhhCCCCCchh-hccCCCCCCHHHHHHHHHHHHHhcCC
Q psy850 123 QEAWIT-NDTLRHNILFGE----PFEPQRYYKTLYNCALNTDIHILPGGDQTE-IGERGINLSGGQKQRVALARALYSNS 196 (280)
Q Consensus 123 Q~~~l~-~~Tv~enI~~g~----~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~-i~~~~~~LSGGQrQRV~LARAL~~~p 196 (280)
|++.++ ..||+||+.++. ........+.+ ...+..+ +.... .++++.+|||||||||+|||||+.+|
T Consensus 100 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p 172 (262)
T 1b0u_A 100 QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA-----LKYLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEP 172 (262)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHH-----HHHHHHT--TCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred cCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHH-----HHHHHHc--CCCchhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 998665 569999998742 11111111111 1122222 23344 57788899999999999999999998
Q ss_pred chhhhhhhhhhccccCCCCce
Q psy850 197 FEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 197 ~i~~~~~ll~ldep~~~l~~i 217 (280)
++|||||||+++|+.
T Consensus 173 ------~lllLDEPts~LD~~ 187 (262)
T 1b0u_A 173 ------DVLLFDEPTSALDPE 187 (262)
T ss_dssp ------SEEEEESTTTTSCHH
T ss_pred ------CEEEEeCCCccCCHH
Confidence 889999999999874
No 30
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.5e-35 Score=277.29 Aligned_cols=136 Identities=27% Similarity=0.357 Sum_probs=109.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+ ++||||++.++ +.||+||+
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 108 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV 108 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999883 79999998665 67999999
Q ss_pred HhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.|+.. .......+.+. ..++.+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 109 ~~~l~~~~~~~~~~~~~v~-----~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~~~P------~lLLLDEP~s~ 175 (355)
T 1z47_A 109 SFGLREKRVPKDEMDARVR-----ELLRFM--RLESYANRFPHELSGGQQQRVALARALAPRP------QVLLFDEPFAA 175 (355)
T ss_dssp HHHHHHTTCCHHHHHHHHH-----HHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------SEEEEESTTCC
T ss_pred HHHHHHcCCCHHHHHHHHH-----HHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHHcCC------CEEEEeCCccc
Confidence 98632 11111111111 122222 2344556788899999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|..
T Consensus 176 LD~~ 179 (355)
T 1z47_A 176 IDTQ 179 (355)
T ss_dssp SSHH
T ss_pred CCHH
Confidence 9864
No 31
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1e-34 Score=276.42 Aligned_cols=136 Identities=25% Similarity=0.293 Sum_probs=107.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+ ++||||++.++ ++||+||+
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 104 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENI 104 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999983 79999998665 67999999
Q ss_pred HhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.|+.... .....+.+. ..++.+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 105 ~~~~~~~~~~~~~~~~~v~-----~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P------~lLLLDEP~s~ 171 (372)
T 1v43_A 105 AFPLKIKKFPKDEIDKRVR-----WAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEP------DVLLMDEPLSN 171 (372)
T ss_dssp HTTCC--CCCHHHHHHHHH-----HHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCC------SEEEEESTTTT
T ss_pred HHHHHhcCCCHHHHHHHHH-----HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCC------CEEEEcCCCcc
Confidence 9985421 111111111 122222 3344567789999999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|..
T Consensus 172 LD~~ 175 (372)
T 1v43_A 172 LDAK 175 (372)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9864
No 32
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.7e-34 Score=310.48 Aligned_cols=161 Identities=29% Similarity=0.370 Sum_probs=143.0
Q ss_pred CCeEEEeceEEEeccCCCCCccccchhhhhhhhcccccCCccccccccccccccceeeeeeEEeeCCcEEEEECCCCCcH
Q psy850 15 SSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGK 94 (280)
Q Consensus 15 ~~~v~~~~~sf~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGK 94 (280)
...|+++|++|.|.... ..++|+||||+|++||+++|+|||||||
T Consensus 385 ~g~i~~~~v~~~y~~~~-----------------------------------~~~vL~~isl~i~~G~~~~ivG~sGsGK 429 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRK-----------------------------------EVQILKGLNLKVKSGQTVALVGNSGCGK 429 (1284)
T ss_dssp CCCEEEEEEEECCSSTT-----------------------------------SCCSEEEEEEEECTTCEEEEECCSSSSH
T ss_pred CCeEEEEEEEEEcCCCC-----------------------------------CCcceecceEEEcCCCEEEEECCCCCCH
Confidence 44799999999996421 1347999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCCCCCcHHHHHHhCCC-CChhhHHHHHHHhhhhhhH
Q psy850 95 SALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHNILFGEP-FEPQRYYKTLYNCALNTDI 160 (280)
Q Consensus 95 STLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l~~~Tv~enI~~g~~-~~~~~~~~~~~~~~l~~~l 160 (280)
|||+++|+|+++|++|+|.++|. ++||+|+|++++.||+|||.++.+ ...++..+.+..+.+...+
T Consensus 430 STl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i 509 (1284)
T 3g5u_A 430 STTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509 (1284)
T ss_dssp HHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999984 899999999999999999999864 3445566666667777778
Q ss_pred hhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 161 ~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
..+|.++.+.+++++.+|||||||||+|||||+++| ++|||||||+++|.
T Consensus 510 ~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p------~iliLDEpts~LD~ 559 (1284)
T 3g5u_A 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP------KILLLDEATSALDT 559 (1284)
T ss_dssp HHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC------SEEEEESTTCSSCH
T ss_pred HhccccccccccCCCCccCHHHHHHHHHHHHHhcCC------CEEEEECCCCCCCH
Confidence 889999999999999999999999999999999998 78999999999985
No 33
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1e-34 Score=274.56 Aligned_cols=136 Identities=29% Similarity=0.307 Sum_probs=110.2
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------------eEEEEecCCCCC-CCcH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------------TCAYVSQEAWIT-NDTL 132 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------------~ig~v~Q~~~l~-~~Tv 132 (280)
+|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++| .++||||++.++ +.||
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 79999999999999999999999999999999999999999999987 279999998766 6799
Q ss_pred HHHHHhCCCCC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcc
Q psy850 133 RHNILFGEPFE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209 (280)
Q Consensus 133 ~enI~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~lde 209 (280)
+||+.|+.... .....+.+. ..++.+ +.....++++.+|||||||||+|||||+.+| ++|+|||
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~-----~~l~~~--~L~~~~~~~~~~LSGGq~QRvalAraL~~~P------~lLLLDE 166 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVE-----EVAKIL--DIHHVLNHFPRELSGAQQQRVALARALVKDP------SLLLLDE 166 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHH-----HHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC------SEEEEES
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCC------CEEEEEC
Confidence 99999875321 111111221 122222 2334456788899999999999999999998 8899999
Q ss_pred ccCCCCceE
Q psy850 210 PCVSLQSIL 218 (280)
Q Consensus 210 p~~~l~~il 218 (280)
|++++|...
T Consensus 167 P~s~LD~~~ 175 (353)
T 1oxx_K 167 PFSNLDARM 175 (353)
T ss_dssp TTTTSCGGG
T ss_pred CcccCCHHH
Confidence 999998743
No 34
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-34 Score=255.45 Aligned_cols=144 Identities=20% Similarity=0.244 Sum_probs=110.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------EEEEecCCCCC-CCcHHHHHHhC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------CAYVSQEAWIT-NDTLRHNILFG 139 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------ig~v~Q~~~l~-~~Tv~enI~~g 139 (280)
.+|++|||+|++||+++|+|||||||||||++|+|+++|++|+|.++|. ++|++|++.++ ..||+||+.++
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999983 79999998766 46999999875
Q ss_pred CCCC--hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 140 EPFE--PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 140 ~~~~--~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.... ... .+.+. ..++.+ +.... ++++.+|||||||||+|||||+.+| ++|+|||||+++|+.
T Consensus 103 ~~~~~~~~~-~~~~~-----~~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL~~~p------~lllLDEPts~LD~~ 167 (214)
T 1sgw_A 103 ASLYGVKVN-KNEIM-----DALESV--EVLDL-KKKLGELSQGTIRRVQLASTLLVNA------EIYVLDDPVVAIDED 167 (214)
T ss_dssp HHHTTCCCC-HHHHH-----HHHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHTTSCC------SEEEEESTTTTSCTT
T ss_pred HHhcCCchH-HHHHH-----HHHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHHHhCC------CEEEEECCCcCCCHH
Confidence 2100 001 11111 112222 22233 5678899999999999999999998 788999999999885
Q ss_pred EEEeehhhhh
Q psy850 218 LLMEEVNVYV 227 (280)
Q Consensus 218 lllDE~~~~~ 227 (280)
-...-.+++.
T Consensus 168 ~~~~l~~~l~ 177 (214)
T 1sgw_A 168 SKHKVLKSIL 177 (214)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4443333333
No 35
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-34 Score=273.30 Aligned_cols=136 Identities=32% Similarity=0.392 Sum_probs=109.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+ ++||||++.++ ++||+||+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 96 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNI 96 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHH
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999883 79999998766 67999999
Q ss_pred HhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 137 LFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 137 ~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
.|+.. .......+.+. ..++.+ +.....++++.+|||||||||+|||||+.+| ++|+||||+++
T Consensus 97 ~~~~~~~~~~~~~~~~~v~-----~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P------~lLLLDEP~s~ 163 (362)
T 2it1_A 97 AFPLELRKAPREEIDKKVR-----EVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVKEP------EVLLLDEPLSN 163 (362)
T ss_dssp HHHHHHTTCCHHHHHHHHH-----HHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC------SEEEEESGGGG
T ss_pred HHHHHhcCCCHHHHHHHHH-----HHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHcCC------CEEEEECcccc
Confidence 98632 11111111111 122222 2233456778899999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|..
T Consensus 164 LD~~ 167 (362)
T 2it1_A 164 LDAL 167 (362)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9864
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.5e-34 Score=260.01 Aligned_cols=137 Identities=25% Similarity=0.318 Sum_probs=109.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCC-CCcHHHHHHhCCCC-----
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT-NDTLRHNILFGEPF----- 142 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~-~~Tv~enI~~g~~~----- 142 (280)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+...++|+||++.++ ..||+||+.++...
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~ 98 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF 98 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTT
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccc
Confidence 479999999999999999999999999999999999999999999888899999998765 67999999986421
Q ss_pred --ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceE
Q psy850 143 --EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 143 --~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~il 218 (280)
......+.+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++|||||||+++|..-
T Consensus 99 ~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p------~lllLDEPts~LD~~~ 163 (253)
T 2nq2_C 99 AKPKSHDYQVAM-----QALDYL--NLTHLAKREFTSLSGGQRQLILIARAIASEC------KLILLDEPTSALDLAN 163 (253)
T ss_dssp CCCCHHHHHHHH-----HHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHHTTC------SEEEESSSSTTSCHHH
T ss_pred cCCCHHHHHHHH-----HHHHHc--CChHHhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEeCCcccCCHHH
Confidence 0111111111 112222 2334456678899999999999999999998 8899999999998743
No 37
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-34 Score=260.00 Aligned_cols=136 Identities=24% Similarity=0.307 Sum_probs=107.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe------------EEEEecCCCCC-CCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYVSQEAWIT-NDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~------------ig~v~Q~~~l~-~~Tv~en 135 (280)
.+|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|. ++|++|++.++ ..||+||
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 108 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEY 108 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHH
Confidence 4799999999999999999999999999999999999999999999873 79999998765 5699999
Q ss_pred HHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+.++.. .......+.+. ..+..+ +.....++++.+|||||||||+|||||+.+| ++|||||||+
T Consensus 109 l~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p------~lllLDEPts 175 (256)
T 1vpl_A 109 LRFVAGFYASSSSEIEEMVE-----RATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNP------RLAILDEPTS 175 (256)
T ss_dssp HHHHHHHHCCCHHHHHHHHH-----HHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC------SEEEEESTTT
T ss_pred HHHHHHHcCCChHHHHHHHH-----HHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEeCCcc
Confidence 987421 11111111111 111111 2334456778899999999999999999998 8899999999
Q ss_pred CCCce
Q psy850 213 SLQSI 217 (280)
Q Consensus 213 ~l~~i 217 (280)
++|+.
T Consensus 176 ~LD~~ 180 (256)
T 1vpl_A 176 GLDVL 180 (256)
T ss_dssp TCCHH
T ss_pred ccCHH
Confidence 99864
No 38
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.8e-34 Score=264.63 Aligned_cols=136 Identities=24% Similarity=0.289 Sum_probs=106.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC---------------eEEEEecCCCC-C--CC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---------------TCAYVSQEAWI-T--ND 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G---------------~ig~v~Q~~~l-~--~~ 130 (280)
.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .++|++|++.+ + ..
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~l 114 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE 114 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTS
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCC
Confidence 479999999999999999999999999999999999999999999987 27999998643 3 34
Q ss_pred cHHHHHHhCCCCC-------hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 131 TLRHNILFGEPFE-------PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 131 Tv~enI~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
||+||+.++.... .....+.+ ...+..+ +.....++++.+|||||||||+|||||+.+| +
T Consensus 115 tv~enl~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p------~ 181 (279)
T 2ihy_A 115 RVIDVVISGAFKSIGVYQDIDDEIRNEA-----HQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQP------Q 181 (279)
T ss_dssp BHHHHHHTTC---------CCHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC------S
T ss_pred CHHHHHHhhhhhccccccCCcHHHHHHH-----HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhCCC------C
Confidence 9999999864210 01111111 1122222 2334456778899999999999999999998 8
Q ss_pred hhhhccccCCCCce
Q psy850 204 FLVLLCPCVSLQSI 217 (280)
Q Consensus 204 ll~ldep~~~l~~i 217 (280)
+|||||||+++|..
T Consensus 182 lLlLDEPts~LD~~ 195 (279)
T 2ihy_A 182 VLILDEPAAGLDFI 195 (279)
T ss_dssp EEEEESTTTTCCHH
T ss_pred EEEEeCCccccCHH
Confidence 89999999999863
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=9.2e-35 Score=274.47 Aligned_cols=135 Identities=27% Similarity=0.379 Sum_probs=108.4
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNIL 137 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI~ 137 (280)
+|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+ ++||||++.++ ++||+||+.
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~ 94 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLE 94 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHH
Confidence 799999999999999999999999999999999999999999999983 79999998766 579999999
Q ss_pred hCCCCC-hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 138 FGEPFE-PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 138 ~g~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
|+.... ..+. +.+. ..++.+ +.....++++.+|||||||||+|||||+.+| ++|+||||++++|.
T Consensus 95 ~~~~~~~~~~~-~~v~-----~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~~P------~lLLLDEP~s~LD~ 160 (348)
T 3d31_A 95 FGMRMKKIKDP-KRVL-----DTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVTNP------KILLLDEPLSALDP 160 (348)
T ss_dssp HHHHHHCCCCH-HHHH-----HHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC------SEEEEESSSTTSCH
T ss_pred HHHHHcCCCHH-HHHH-----HHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEECccccCCH
Confidence 863110 0000 1111 112222 2233456778899999999999999999998 88999999999986
Q ss_pred eE
Q psy850 217 IL 218 (280)
Q Consensus 217 il 218 (280)
..
T Consensus 161 ~~ 162 (348)
T 3d31_A 161 RT 162 (348)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 40
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-34 Score=256.51 Aligned_cols=134 Identities=25% Similarity=0.342 Sum_probs=107.6
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCC-CCcHHHHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWIT-NDTLRHNIL 137 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~-~~Tv~enI~ 137 (280)
+|++|||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+ ++|+||++.++ ..||+||+.
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~ 92 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHH
Confidence 48999999999 999999999999999999999999999999999883 79999998766 569999999
Q ss_pred hCCCCCh-hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 138 FGEPFEP-QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 138 ~g~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
++..... ....+.+ ...++.+ +.....++++.+|||||||||+|||||+.+| ++|+|||||+++|+
T Consensus 93 ~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p------~lllLDEPts~LD~ 159 (240)
T 2onk_A 93 YGLRNVERVERDRRV-----REMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQP------RLLLLDEPLSAVDL 159 (240)
T ss_dssp TTCTTSCHHHHHHHH-----HHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC------SSBEEESTTSSCCH
T ss_pred HHHHHcCCchHHHHH-----HHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEeCCcccCCH
Confidence 8753321 1111111 1122222 2333456778899999999999999999998 88999999999987
Q ss_pred e
Q psy850 217 I 217 (280)
Q Consensus 217 i 217 (280)
.
T Consensus 160 ~ 160 (240)
T 2onk_A 160 K 160 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.8e-34 Score=273.36 Aligned_cols=137 Identities=25% Similarity=0.314 Sum_probs=109.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEecCCCCC-CC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVSQEAWIT-ND 130 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~Q~~~l~-~~ 130 (280)
.+|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+ ++||||++.++ ++
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 96 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM 96 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCC
Confidence 4799999999999999999999999999999999999999999999872 79999998765 67
Q ss_pred cHHHHHHhCCC---CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 131 TLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 131 Tv~enI~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
||+||+.|+.. .......+.+.+ .++.+ +.....++++.+|||||||||+|||||+.+| ++|+|
T Consensus 97 tv~eni~~~~~~~~~~~~~~~~~v~~-----~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P------~lLLL 163 (372)
T 1g29_1 97 TVYDNIAFPLKLRKVPRQEIDQRVRE-----VAELL--GLTELLNRKPRELSGGQRQRVALGRAIVRKP------QVFLM 163 (372)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHH-----HHHHH--TCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC------SEEEE
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHH-----HHHHC--CCchHhcCCcccCCHHHHHHHHHHHHHhcCC------CEEEE
Confidence 99999998632 111111112211 11111 2334456778899999999999999999998 88999
Q ss_pred ccccCCCCceE
Q psy850 208 LCPCVSLQSIL 218 (280)
Q Consensus 208 dep~~~l~~il 218 (280)
|||++++|...
T Consensus 164 DEP~s~LD~~~ 174 (372)
T 1g29_1 164 DEPLSNLDAKL 174 (372)
T ss_dssp ECTTTTSCHHH
T ss_pred CCCCccCCHHH
Confidence 99999998743
No 42
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-34 Score=260.83 Aligned_cols=135 Identities=23% Similarity=0.320 Sum_probs=108.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----------EEEEecCC--CCCCCcHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------CAYVSQEA--WITNDTLRHNI 136 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----------ig~v~Q~~--~l~~~Tv~enI 136 (280)
.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ++|++|++ .++..||+||+
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl 100 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV 100 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHH
Confidence 4799999999999999999999999999999999999999999999983 79999996 45678999999
Q ss_pred HhCCCC--ChhhHHHHHHHhhhhhhHhhCCCCCc--hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 137 LFGEPF--EPQRYYKTLYNCALNTDIHILPGGDQ--TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 137 ~~g~~~--~~~~~~~~~~~~~l~~~l~~l~~g~~--~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
.++... ......+.+.. .+..+ +.. ...++++.+|||||||||+|||||+.+| ++|||||||+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~-----~l~~~--gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p------~lllLDEPts 167 (266)
T 2yz2_A 101 AFAVKNFYPDRDPVPLVKK-----AMEFV--GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP------DILILDEPLV 167 (266)
T ss_dssp HHTTTTTCTTSCSHHHHHH-----HHHHT--TCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC------SEEEEESTTT
T ss_pred HHHHHhcCCHHHHHHHHHH-----HHHHc--CcCCcccccCChhhCCHHHHHHHHHHHHHHcCC------CEEEEcCccc
Confidence 986432 11111111111 11111 223 3456677899999999999999999998 8899999999
Q ss_pred CCCc
Q psy850 213 SLQS 216 (280)
Q Consensus 213 ~l~~ 216 (280)
++|.
T Consensus 168 ~LD~ 171 (266)
T 2yz2_A 168 GLDR 171 (266)
T ss_dssp TCCH
T ss_pred cCCH
Confidence 9986
No 43
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.5e-33 Score=254.61 Aligned_cols=147 Identities=24% Similarity=0.284 Sum_probs=110.4
Q ss_pred ccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCCCC
Q psy850 61 KAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWI 127 (280)
Q Consensus 61 ~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~~l 127 (280)
+++++....+|+++||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|. ++|++|++.+
T Consensus 6 ~~~~l~~~~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 84 (249)
T 2qi9_C 6 QLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTP 84 (249)
T ss_dssp EEEEEEETTTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCC
T ss_pred EEEceEEEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCcc
Confidence 334433226899999999999999999999999999999999999999 99999983 7999999876
Q ss_pred C-CCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCc-hhhhhhhh
Q psy850 128 T-NDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSF-EQQTFHFL 205 (280)
Q Consensus 128 ~-~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~-i~~~~~ll 205 (280)
+ ..||+||+.++...... .+.+.. .+..+ +.....++++.+|||||||||+|||||+.+|+ -..++.+|
T Consensus 85 ~~~~tv~e~l~~~~~~~~~--~~~~~~-----~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 85 PFATPVWHYLTLHQHDKTR--TELLND-----VAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp CTTCBHHHHHHTTCSSTTC--HHHHHH-----HHHHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred CCCCcHHHHHHHhhccCCc--HHHHHH-----HHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEE
Confidence 5 56999999987422111 111111 11111 22334556788999999999999999999981 00011189
Q ss_pred hhccccCCCCce
Q psy850 206 VLLCPCVSLQSI 217 (280)
Q Consensus 206 ~ldep~~~l~~i 217 (280)
+|||||+++|..
T Consensus 156 lLDEPts~LD~~ 167 (249)
T 2qi9_C 156 LLDEPMNSLDVA 167 (249)
T ss_dssp EESSTTTTCCHH
T ss_pred EEECCcccCCHH
Confidence 999999999874
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.1e-33 Score=253.66 Aligned_cols=129 Identities=25% Similarity=0.270 Sum_probs=106.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------eEE-EEecCCCCCCCcHHHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------TCA-YVSQEAWITNDTLRHNIL 137 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------~ig-~v~Q~~~l~~~Tv~enI~ 137 (280)
.+|+++||+|+ |++++|+||||||||||||+|+|++ |++|+|.++| +++ |++|++.+ ..|++||+.
T Consensus 19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~enl~ 95 (263)
T 2pjz_A 19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVTVNDIVY 95 (263)
T ss_dssp EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-TSBHHHHHH
T ss_pred eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-CCcHHHHHH
Confidence 47999999999 9999999999999999999999999 9999999998 489 99999888 889999998
Q ss_pred hCCC---CChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 138 FGEP---FEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 138 ~g~~---~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
++.. ...++..+ .+..+ +.. ...++++.+|||||||||+|||||+.+| ++|+|||||++
T Consensus 96 ~~~~~~~~~~~~~~~---------~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p------~lllLDEPts~ 158 (263)
T 2pjz_A 96 LYEELKGLDRDLFLE---------MLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALASQP------EIVGLDEPFEN 158 (263)
T ss_dssp HHHHHTCCCHHHHHH---------HHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC------SEEEEECTTTT
T ss_pred HhhhhcchHHHHHHH---------HHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHHhCC------CEEEEECCccc
Confidence 7421 11111111 12222 233 4566778899999999999999999998 88999999999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|+.
T Consensus 159 LD~~ 162 (263)
T 2pjz_A 159 VDAA 162 (263)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 9863
No 45
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.1e-33 Score=249.22 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=101.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEECCe--------------EEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ--LRSTAGKLSREGT--------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl--~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~T 131 (280)
.+|++|||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+ ++|++|++.++ ..|
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVT 96 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCB
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCC
Confidence 479999999999999999999999999999999998 8899999999883 57999998766 569
Q ss_pred HHHHHHhCCC------CChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCC-CCHHHHHHHHHHHHHhcCCchhhhhh
Q psy850 132 LRHNILFGEP------FEPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGIN-LSGGQKQRVALARALYSNSFEQQTFH 203 (280)
Q Consensus 132 v~enI~~g~~------~~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~-LSGGQrQRV~LARAL~~~p~i~~~~~ 203 (280)
+++|+.++.. .......+.+. ..+..+ +. ....++++.+ |||||||||+|||||+.+| +
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p------~ 163 (250)
T 2d2e_A 97 IANFLRLALQAKLGREVGVAEFWTKVK-----KALELL--DWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP------T 163 (250)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHHH-----HHHHHH--TCCGGGGGSBTTCC----HHHHHHHHHHHHHCC------S
T ss_pred HHHHHHHHHHhhccccCCHHHHHHHHH-----HHHHHc--CCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC------C
Confidence 9999976421 01011111111 112211 22 2334567788 9999999999999999998 8
Q ss_pred hhhhccccCCCCceE
Q psy850 204 FLVLLCPCVSLQSIL 218 (280)
Q Consensus 204 ll~ldep~~~l~~il 218 (280)
+|||||||+++|+.-
T Consensus 164 lllLDEPts~LD~~~ 178 (250)
T 2d2e_A 164 YAVLDETDSGLDIDA 178 (250)
T ss_dssp EEEEECGGGTTCHHH
T ss_pred EEEEeCCCcCCCHHH
Confidence 899999999998743
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.8e-33 Score=297.53 Aligned_cols=143 Identities=29% Similarity=0.435 Sum_probs=128.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCCCCCcHHHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITNDTLRHN 135 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l~~~Tv~en 135 (280)
++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++||||++.+++.||+||
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 1126 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHH
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHH
Confidence 479999999999999999999999999999999999999999999988 3899999999999999999
Q ss_pred HHhCCCC---ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 136 ILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 136 I~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
+.++... ..++..+.+..+.+...+..+|.+..+.+++++.+|||||||||+|||||+++| ++|||||||+
T Consensus 1127 i~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p------~iLiLDEpTs 1200 (1284)
T 3g5u_A 1127 IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP------HILLLDEATS 1200 (1284)
T ss_dssp HTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCC------SSEEEESCSS
T ss_pred HhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCC------CEEEEeCCcc
Confidence 9988642 334455556666666777788999999999999999999999999999999998 8899999999
Q ss_pred CCCce
Q psy850 213 SLQSI 217 (280)
Q Consensus 213 ~l~~i 217 (280)
++|.-
T Consensus 1201 ~lD~~ 1205 (1284)
T 3g5u_A 1201 ALDTE 1205 (1284)
T ss_dssp SCCHH
T ss_pred cCCHH
Confidence 99863
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.98 E-value=1.9e-32 Score=249.38 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=107.7
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEECCe--------------EEEEecCCCCC-CCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ--LRSTAGKLSREGT--------------CAYVSQEAWIT-NDT 131 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl--~~p~~G~I~i~G~--------------ig~v~Q~~~l~-~~T 131 (280)
.+|++|||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|. ++|++|++.++ ..|
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~t 113 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVS 113 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCB
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccccc
Confidence 479999999999999999999999999999999999 4789999999883 78999998765 569
Q ss_pred HHHHHHhCCC----------CChhhHHHHHHHhhhhhhHhhCCCCCc-hhhccCCC-CCCHHHHHHHHHHHHHhcCCchh
Q psy850 132 LRHNILFGEP----------FEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGERGI-NLSGGQKQRVALARALYSNSFEQ 199 (280)
Q Consensus 132 v~enI~~g~~----------~~~~~~~~~~~~~~l~~~l~~l~~g~~-~~i~~~~~-~LSGGQrQRV~LARAL~~~p~i~ 199 (280)
+.+|+.+... .........+ ...+..+ +.. ...++++. +|||||||||+|||||+.+|
T Consensus 114 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p--- 183 (267)
T 2zu0_C 114 NQFFLQTALNAVRSYRGQETLDRFDFQDLM-----EEKIALL--KMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEP--- 183 (267)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCCHHHHHHHH-----HHHHHHT--TCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHhhhhhhccccCCHHHHHHHH-----HHHHHHc--CCChhHhcCCcccCCCHHHHHHHHHHHHHHhCC---
Confidence 9999875320 0011111111 1122222 222 22345565 59999999999999999998
Q ss_pred hhhhhhhhccccCCCCceEEEeehhhh
Q psy850 200 QTFHFLVLLCPCVSLQSILLMEEVNVY 226 (280)
Q Consensus 200 ~~~~ll~ldep~~~l~~illlDE~~~~ 226 (280)
++|||||||+++|+.-.-.-.+++
T Consensus 184 ---~lLlLDEPts~LD~~~~~~l~~~l 207 (267)
T 2zu0_C 184 ---ELCILDESDSGLDIDALKVVADGV 207 (267)
T ss_dssp ---SEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHH
Confidence 889999999999875443333333
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=5.9e-28 Score=239.47 Aligned_cols=137 Identities=20% Similarity=0.230 Sum_probs=105.3
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-eEEEEecCCCC-CCCcHHHHHHhCCCCChhh
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-TCAYVSQEAWI-TNDTLRHNILFGEPFEPQR 146 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-~ig~v~Q~~~l-~~~Tv~enI~~g~~~~~~~ 146 (280)
..|..+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|++|+... +..||++|+.+........
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 361 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALST 361 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCT
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccch
Confidence 457788999999999999999999999999999999999999999886 48999998654 4679999997632111000
Q ss_pred HHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceE
Q psy850 147 YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 147 ~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~il 218 (280)
........ +..+ +.....++++.+|||||||||+|||||+++| ++|||||||+++|..-
T Consensus 362 ~~~~~~~~-----l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p------~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 362 SSWFFEEV-----TKRL--NLHRLLESNVNDLSGGELQKLYIAATLAKEA------DLYVLDQPSSYLDVEE 420 (538)
T ss_dssp TSHHHHHT-----TTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCC------SEEEEESTTTTCCHHH
T ss_pred hHHHHHHH-----HHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEEeCCccCCCHHH
Confidence 00111111 1111 2233456778899999999999999999998 8899999999998743
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=8e-28 Score=238.42 Aligned_cols=135 Identities=24% Similarity=0.199 Sum_probs=105.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCC-CCCcHHHHHHhCCCCChhhH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI-TNDTLRHNILFGEPFEPQRY 147 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l-~~~Tv~enI~~g~~~~~~~~ 147 (280)
..|++++|+|++||+++|+||||||||||+++|+|+++|++|+|.+...++|++|++.. +..||.+++..... .....
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~-~~~~~ 378 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDA-SKLNS 378 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHH-HHHTC
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhc-cCCCH
Confidence 46888999999999999999999999999999999999999999987789999999754 56799888764200 00000
Q ss_pred HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 148 YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 148 ~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.+.+ ...+..+ +......+++.+|||||||||+|||||+.+| ++|||||||+++|..
T Consensus 379 ~~~~-----~~~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p------~lLlLDEPt~~LD~~ 435 (538)
T 1yqt_A 379 NFYK-----TELLKPL--GIIDLYDREVNELSGGELQRVAIAATLLRDA------DIYLLDEPSAYLDVE 435 (538)
T ss_dssp HHHH-----HHTTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC------SEEEEECTTTTCCHH
T ss_pred HHHH-----HHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHhCC------CEEEEeCCcccCCHH
Confidence 0111 1111111 2334556778899999999999999999998 889999999999864
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=9.2e-28 Score=241.16 Aligned_cols=135 Identities=24% Similarity=0.200 Sum_probs=104.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCC-CCCcHHHHHHhCCCCChhhH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI-TNDTLRHNILFGEPFEPQRY 147 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l-~~~Tv~enI~~g~~~~~~~~ 147 (280)
..|++++|+|++||+++|+||||||||||+++|+|+++|++|+|.+...++|+||++.. +..||.+++.+... .....
T Consensus 370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~-~~~~~ 448 (607)
T 3bk7_A 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDS-SKLNS 448 (607)
T ss_dssp CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHH-HHHHC
T ss_pred eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhc-cCCCH
Confidence 46888999999999999999999999999999999999999999887789999999754 57799998865200 00000
Q ss_pred HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 148 YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 148 ~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
...+ ...+..+ +.....++++.+|||||||||+|||||+++| ++|||||||+++|..
T Consensus 449 ~~~~-----~~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p------~lLlLDEPt~~LD~~ 505 (607)
T 3bk7_A 449 NFYK-----TELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLRDA------DIYLLDEPSAYLDVE 505 (607)
T ss_dssp HHHH-----HHTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCC------SEEEEECTTTTCCHH
T ss_pred HHHH-----HHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCC------CEEEEeCCccCCCHH
Confidence 0111 1112211 1223456678899999999999999999998 889999999999864
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.9e-26 Score=228.05 Aligned_cols=136 Identities=20% Similarity=0.166 Sum_probs=102.3
Q ss_pred cceeeeeeEEeeCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCC-CCCCcHHHHHHhCCC
Q psy850 68 NIALVDINFFAPKG-----KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW-ITNDTLRHNILFGEP 141 (280)
Q Consensus 68 ~~vL~~Isl~i~~G-----eivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~-l~~~Tv~enI~~g~~ 141 (280)
..++++++|++.+| |+++|+||||||||||+++|+|+++|++|+....-.++|++|+.. .+..|+++++.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~ 439 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIR 439 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhh
Confidence 35789999999988 789999999999999999999999999998543346899999864 456799999864321
Q ss_pred CChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 142 FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
..... ...... .+..+ +.....++++.+|||||||||+|||||+++| ++|||||||+++|..
T Consensus 440 ~~~~~-~~~~~~-----~l~~l--~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p------~lLlLDEPT~gLD~~ 501 (608)
T 3j16_B 440 GQFLN-PQFQTD-----VVKPL--RIDDIIDQEVQHLSGGELQRVAIVLALGIPA------DIYLIDEPSAYLDSE 501 (608)
T ss_dssp STTTS-HHHHHH-----THHHH--TSTTTSSSBSSSCCHHHHHHHHHHHHTTSCC------SEEEECCTTTTCCHH
T ss_pred ccccc-HHHHHH-----HHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHhCC------CEEEEECCCCCCCHH
Confidence 11000 011111 11111 1223456778899999999999999999998 889999999999863
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=1.2e-25 Score=235.35 Aligned_cols=70 Identities=27% Similarity=0.426 Sum_probs=61.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCC-----CCCCcHHHHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAW-----ITNDTLRHNIL 137 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~-----l~~~Tv~enI~ 137 (280)
+.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ +++|++|++. ....|+++++.
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~ 762 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQ 762 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHH
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHHHHH
Confidence 4589999999999999999999999999999999999999999999986 5999999852 12457777764
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=3.7e-26 Score=226.47 Aligned_cols=129 Identities=22% Similarity=0.236 Sum_probs=97.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE---------EECC---------------eEEEEecC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL---------SREG---------------TCAYVSQE 124 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I---------~i~G---------------~ig~v~Q~ 124 (280)
.+|++|| +|++||+++|+||||||||||+|+|+|+++|++|++ .++| .+++++|.
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh
Confidence 4799999 999999999999999999999999999999999995 2333 25788886
Q ss_pred CCC----CCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhh
Q psy850 125 AWI----TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQ 200 (280)
Q Consensus 125 ~~l----~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~ 200 (280)
... +..++.+++..... ..+..+.+... +.....++++.+|||||||||+|||||+.+|
T Consensus 115 ~~~~~~~~~~~v~e~~~~~~~--~~~~~~~l~~l-----------gl~~~~~~~~~~LSgGekQRv~iAraL~~~P---- 177 (538)
T 1yqt_A 115 VDLIPKAVKGKVIELLKKADE--TGKLEEVVKAL-----------ELENVLEREIQHLSGGELQRVAIAAALLRNA---- 177 (538)
T ss_dssp GGGSGGGCCSBHHHHHHHHCS--SSCHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHSCC----
T ss_pred hhhcchhhhccHHHHHhhhhH--HHHHHHHHHHc-----------CCChhhhCChhhCCHHHHHHHHHHHHHhcCC----
Confidence 432 22488888753211 11222222221 1222345667889999999999999999998
Q ss_pred hhhhhhhccccCCCCce
Q psy850 201 TFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~i 217 (280)
++|||||||++||..
T Consensus 178 --~lLlLDEPTs~LD~~ 192 (538)
T 1yqt_A 178 --TFYFFDEPSSYLDIR 192 (538)
T ss_dssp --SEEEEESTTTTCCHH
T ss_pred --CEEEEECCcccCCHH
Confidence 889999999999864
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=7.6e-26 Score=227.23 Aligned_cols=129 Identities=22% Similarity=0.261 Sum_probs=99.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE---------EECC---------------eEEEEecC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL---------SREG---------------TCAYVSQE 124 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I---------~i~G---------------~ig~v~Q~ 124 (280)
.+|+++| +|++||+++|+|||||||||||++|+|+++|++|++ .++| .+++++|.
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 4899999 999999999999999999999999999999999995 2333 25788886
Q ss_pred CC----CCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhh
Q psy850 125 AW----ITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQ 200 (280)
Q Consensus 125 ~~----l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~ 200 (280)
.. .+..|+.+|+..... ..+..+.+... +.....++++.+|||||||||+|||||+++|
T Consensus 185 ~~~~~~~~~~tv~e~l~~~~~--~~~~~~~L~~l-----------gL~~~~~~~~~~LSGGekQRvaIAraL~~~P---- 247 (607)
T 3bk7_A 185 VDLLPKAVKGKVRELLKKVDE--VGKFEEVVKEL-----------ELENVLDRELHQLSGGELQRVAIAAALLRKA---- 247 (607)
T ss_dssp GGGGGGTCCSBHHHHHHHTCC--SSCHHHHHHHT-----------TCTTGGGSBGGGCCHHHHHHHHHHHHHHSCC----
T ss_pred hhhchhhccccHHHHhhhhHH--HHHHHHHHHHc-----------CCCchhCCChhhCCHHHHHHHHHHHHHhcCC----
Confidence 32 233589999865321 11222222221 2223456678899999999999999999998
Q ss_pred hhhhhhhccccCCCCce
Q psy850 201 TFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 201 ~~~ll~ldep~~~l~~i 217 (280)
++|||||||++||..
T Consensus 248 --~lLlLDEPTs~LD~~ 262 (607)
T 3bk7_A 248 --HFYFFDEPSSYLDIR 262 (607)
T ss_dssp --SEEEEECTTTTCCHH
T ss_pred --CEEEEECCcccCCHH
Confidence 889999999999864
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=8.7e-26 Score=228.33 Aligned_cols=143 Identities=24% Similarity=0.238 Sum_probs=79.0
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCc-------eEEECCe--
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALL---------------------YAILSQLRSTAG-------KLSREGT-- 117 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLL---------------------k~I~Gl~~p~~G-------~I~i~G~-- 117 (280)
..+|+||||+|++||+++|+||||||||||+ +++.|+..|+.| .|.+++.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 889999999854 4444432
Q ss_pred -------EEEEecCCC--------------------CCCCcHHHHHHhCCCCChhhHHHH-----HHHh-hhhhhHhhCC
Q psy850 118 -------CAYVSQEAW--------------------ITNDTLRHNILFGEPFEPQRYYKT-----LYNC-ALNTDIHILP 164 (280)
Q Consensus 118 -------ig~v~Q~~~--------------------l~~~Tv~enI~~g~~~~~~~~~~~-----~~~~-~l~~~l~~l~ 164 (280)
+++++|.+. +...|+++|+.+............ .... .....+..+
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 189 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV- 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT-
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc-
Confidence 344444321 124588999876421110000000 0000 000011111
Q ss_pred CCCch-hhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 165 GGDQT-EIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 165 ~g~~~-~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+... ..++++.+|||||||||+|||||+++|+ |++|||||||+++|+
T Consensus 190 -gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~----~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 190 -GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLT----GVLYVLDEPSIGLHQ 237 (670)
T ss_dssp -TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCC----SCEEEEECTTTTCCG
T ss_pred -CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCC----CCEEEEECCccCCCH
Confidence 1111 2356788999999999999999999982 238999999999975
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=2.4e-23 Score=217.89 Aligned_cols=130 Identities=26% Similarity=0.334 Sum_probs=93.7
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHc-CCC--CCCceEEECCeEEEEecCC--CCCCCcHHHHHHhCCC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILS-QLR--STAGKLSREGTCAYVSQEA--WITNDTLRHNILFGEP 141 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~G-l~~--p~~G~I~i~G~ig~v~Q~~--~l~~~Tv~enI~~g~~ 141 (280)
++.+|+++||+|++|++++|+||||||||||||+|+| .+. +.... .+++|++|++ .....|+.+|+.+...
T Consensus 447 ~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~----~~~~~v~q~~~~~~~~ltv~e~l~~~~~ 522 (986)
T 2iw3_A 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEE----CRTVYVEHDIDGTHSDTSVLDFVFESGV 522 (986)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTT----SCEEETTCCCCCCCTTSBHHHHHHTTCS
T ss_pred CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccc----eeEEEEcccccccccCCcHHHHHHHhhc
Confidence 3568999999999999999999999999999999994 221 10111 1367888874 3446799999986110
Q ss_pred CChhhHHHHHHHhhhhhhHhhCCCCC-chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 142 FEPQRYYKTLYNCALNTDIHILPGGD-QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~l~~l~~g~-~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
...++.... +..+ +. ....++++.+|||||||||+|||||+.+| ++|||||||+++|..
T Consensus 523 ~~~~~v~~~---------L~~l--gL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P------~lLLLDEPTs~LD~~ 582 (986)
T 2iw3_A 523 GTKEAIKDK---------LIEF--GFTDEMIAMPISALSGGWKMKLALARAVLRNA------DILLLDEPTNHLDTV 582 (986)
T ss_dssp SCHHHHHHH---------HHHT--TCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTC------SEEEEESTTTTCCHH
T ss_pred CHHHHHHHH---------HHHc--CCChhhhcCCcccCCHHHHHHHHHHHHHhcCC------CEEEEECCccCCCHH
Confidence 001111111 1111 22 23345677889999999999999999998 889999999999864
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=9.4e-24 Score=212.09 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=87.9
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-----------ECCe-------------E--EEEe
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS-----------REGT-------------C--AYVS 122 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~-----------i~G~-------------i--g~v~ 122 (280)
..|++++ .+++||+++|+||||||||||||+|+|+++|++|+|. +.|. + .+.+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKP 170 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhch
Confidence 4566666 5899999999999999999999999999999999982 2221 1 1222
Q ss_pred cCCCC-------CCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcC
Q psy850 123 QEAWI-------TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195 (280)
Q Consensus 123 Q~~~l-------~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~ 195 (280)
|.... ...++.+++........++..+.+ ..+ +.....++++.+|||||||||+|||||+.+
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l---------~~~--gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~ 239 (608)
T 3j16_B 171 QYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYI---------KIL--QLENVLKRDIEKLSGGELQRFAIGMSCVQE 239 (608)
T ss_dssp CCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHH---------HHH--TCTGGGGSCTTTCCHHHHHHHHHHHHHHSC
T ss_pred hhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHH---------HHc--CCcchhCCChHHCCHHHHHHHHHHHHHHhC
Confidence 21100 011344444322111111111111 111 233445677889999999999999999999
Q ss_pred CchhhhhhhhhhccccCCCCce
Q psy850 196 SFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 196 p~i~~~~~ll~ldep~~~l~~i 217 (280)
| ++|||||||++||.-
T Consensus 240 p------~llllDEPts~LD~~ 255 (608)
T 3j16_B 240 A------DVYMFDEPSSYLDVK 255 (608)
T ss_dssp C------SEEEEECTTTTCCHH
T ss_pred C------CEEEEECcccCCCHH
Confidence 8 889999999999863
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=3.7e-24 Score=212.28 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=86.7
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE-----------EECCe---------------EEEEecC----CCC
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-----------SREGT---------------CAYVSQE----AWI 127 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I-----------~i~G~---------------ig~v~Q~----~~l 127 (280)
+++||++||+||||||||||+|+|+|+++|++|+| .+.|. +....|. +.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 46999999999999999999999999999999998 34442 2333333 334
Q ss_pred CCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy850 128 TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207 (280)
Q Consensus 128 ~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~l 207 (280)
+..++.+++..... ..+..+.+... +.....++++.+|||||||||+|||||+.+| ++|||
T Consensus 102 ~~~~v~~~l~~~~~--~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p------~illl 162 (538)
T 3ozx_A 102 LKGTVNEILTKIDE--RGKKDEVKELL-----------NMTNLWNKDANILSGGGLQRLLVAASLLREA------DVYIF 162 (538)
T ss_dssp CCSBHHHHHHHHCC--SSCHHHHHHHT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHHSCC------SEEEE
T ss_pred ccCcHHHHhhcchh--HHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHHHHcCC------CEEEE
Confidence 45577776643211 11122222221 1223345667789999999999999999998 88999
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
||||+++|.-
T Consensus 163 DEPts~LD~~ 172 (538)
T 3ozx_A 163 DQPSSYLDVR 172 (538)
T ss_dssp ESTTTTCCHH
T ss_pred ECCcccCCHH
Confidence 9999999863
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.88 E-value=2.6e-23 Score=210.26 Aligned_cols=43 Identities=35% Similarity=0.478 Sum_probs=37.4
Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 171 IGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 171 i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.++++.+|||||||||+|||||+++| ..|++|||||||+++|+
T Consensus 537 ~~~~~~~LSgG~~qrv~iAraL~~~p---~~p~llllDEPt~~LD~ 579 (670)
T 3ux8_A 537 LGQPATTLSGGEAQRVKLAAELHRRS---NGRTLYILDEPTTGLHV 579 (670)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHSCC---CSCEEEEEESTTTTCCH
T ss_pred ccCCchhCCHHHHHHHHHHHHHhhCC---CCCcEEEEeCCCCCCCH
Confidence 45678899999999999999999987 23579999999999974
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.4e-24 Score=209.96 Aligned_cols=132 Identities=14% Similarity=0.025 Sum_probs=99.1
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc-e-EEECC----eEEEEecCCCC----CCCcHHHHHHhCC
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG-K-LSREG----TCAYVSQEAWI----TNDTLRHNILFGE 140 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G-~-I~i~G----~ig~v~Q~~~l----~~~Tv~enI~~g~ 140 (280)
+.++||++++|++++|+||||||||||+|+|+|+++|++| + |.++| .++|+||+..+ ...|+++|+ ++.
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~ 206 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQ 206 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSC
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-ccc
Confidence 4589999999999999999999999999999999999999 9 99986 47899998732 245899998 654
Q ss_pred CCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHH--HhcCCchhhhhhh----hhhcc-ccCC
Q psy850 141 PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARA--LYSNSFEQQTFHF----LVLLC-PCVS 213 (280)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARA--L~~~p~i~~~~~l----l~lde-p~~~ 213 (280)
....... ........+..+ +..... + +.+|||||||||+|||| |+.+| ++ ||||| |+++
T Consensus 207 ~~~~~~~----~~~~~~~ll~~~--gl~~~~-~-~~~LSgGq~qrlalAra~rL~~~p------~i~~sGLlLDEpPts~ 272 (460)
T 2npi_A 207 SLTSGAT----LLHNKQPMVKNF--GLERIN-E-NKDLYLECISQLGQVVGQRLHLDP------QVRRSGCIVDTPSISQ 272 (460)
T ss_dssp BCBSSCC----SSCCBCCEECCC--CSSSGG-G-CHHHHHHHHHHHHHHHHHHHHHCH------HHHHSCEEEECCCGGG
T ss_pred ccccCcc----hHHHHHHHHHHh--CCCccc-c-hhhhhHHHHHHHHHHHHHHhccCc------ccCcceEEEeCCcccc
Confidence 3210000 000011111111 222222 2 67899999999999999 99997 89 99999 9999
Q ss_pred CCce
Q psy850 214 LQSI 217 (280)
Q Consensus 214 l~~i 217 (280)
+|..
T Consensus 273 LD~~ 276 (460)
T 2npi_A 273 LDEN 276 (460)
T ss_dssp SCSS
T ss_pred cChh
Confidence 9876
No 61
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.85 E-value=5.3e-24 Score=187.18 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=75.3
Q ss_pred cccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC----------CeEEEEecCCCCCCCc
Q psy850 62 AEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE----------GTCAYVSQEAWITNDT 131 (280)
Q Consensus 62 ~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~----------G~ig~v~Q~~~l~~~T 131 (280)
.+..+.+.+|++| ++|++++|+||||||||||+++|+|+ +|++|+|... ..++|+||++
T Consensus 7 pk~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 7 PKTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp CCSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------
T ss_pred cCCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH------
Confidence 3344455688885 89999999999999999999999999 9999998431 1367777765
Q ss_pred HHHHH-HhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccc
Q psy850 132 LRHNI-LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCP 210 (280)
Q Consensus 132 v~enI-~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep 210 (280)
++|+ .+.. .....+........+ ...+.. .| ||||||+|||||+.+| ++||||||
T Consensus 76 -~enl~~~~~-----~~~~~~~~~~~~~~~-------~~~l~~---gl--Gq~qrv~lAraL~~~p------~lllLDEP 131 (208)
T 3b85_A 76 -NEKIDPYLR-----PLHDALRDMVEPEVI-------PKLMEA---GI--VEVAPLAYMRGRTLND------AFVILDEA 131 (208)
T ss_dssp -----CTTTH-----HHHHHHTTTSCTTHH-------HHHHHT---TS--EEEEEGGGGTTCCBCS------EEEEECSG
T ss_pred -HHHHHHHHH-----HHHHHHHHhccHHHH-------HHHHHh---CC--chHHHHHHHHHHhcCC------CEEEEeCC
Confidence 5555 3311 000000000000000 001111 13 9999999999999998 88999999
Q ss_pred cCC
Q psy850 211 CVS 213 (280)
Q Consensus 211 ~~~ 213 (280)
|++
T Consensus 132 ts~ 134 (208)
T 3b85_A 132 QNT 134 (208)
T ss_dssp GGC
T ss_pred ccc
Confidence 999
No 62
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=1.3e-22 Score=195.44 Aligned_cols=136 Identities=15% Similarity=0.010 Sum_probs=101.5
Q ss_pred cceeeeeeEEeeCCc--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe----EEEEec
Q psy850 68 NIALVDINFFAPKGK--------------------LVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----CAYVSQ 123 (280)
Q Consensus 68 ~~vL~~Isl~i~~Ge--------------------ivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~----ig~v~Q 123 (280)
+.+|++|+|+|++|+ +++|+||||||||||+|+|+|+++|++|+|.++|. .+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 357999999999999 99999999999999999999999999999988873 379999
Q ss_pred CCCCCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHH--HHHHHHHHHHHhc-CCchhh
Q psy850 124 EAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGG--QKQRVALARALYS-NSFEQQ 200 (280)
Q Consensus 124 ~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGG--QrQRV~LARAL~~-~p~i~~ 200 (280)
++..++.|++||+.++.. ..+..+.+....+.. ...... ||+| ||||+.|||||+. +.+++.
T Consensus 116 ~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~------------~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYE------------YDFFII-ISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp CSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGG------------CSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCeeehHhhcccch--HHHHHHHHHHcCCCc------------cCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 876557788888766532 112222222221110 112223 9999 9999999999998 111111
Q ss_pred ---hhhhhhhccccCCCCceE
Q psy850 201 ---TFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 201 ---~~~ll~ldep~~~l~~il 218 (280)
.||++++|||++++|+.-
T Consensus 181 V~tkpdlllLDEPtsgLD~~~ 201 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFD 201 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCC
T ss_pred EEecCcccccCcccccCCHHH
Confidence 349999999999998864
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=4.6e-20 Score=192.36 Aligned_cols=43 Identities=33% Similarity=0.478 Sum_probs=37.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 171 IGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 171 i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+++++.+|||||||||+|||||+++| ..|++|||||||+++|.
T Consensus 799 lgq~~~~LSGGErQRV~LAraL~~~p---~~p~LLILDEPTsGLD~ 841 (916)
T 3pih_A 799 LGQPATTLSGGEAQRIKLASELRKRD---TGRTLYILDEPTVGLHF 841 (916)
T ss_dssp TTCCSTTCCHHHHHHHHHHHHHTSCC---CSSEEEEEESTTTTCCH
T ss_pred ccCCccCCCHHHHHHHHHHHHHhhCC---CCCCEEEEECCCCCCCH
Confidence 46778899999999999999999876 23589999999999974
No 64
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.81 E-value=6.8e-23 Score=190.21 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=86.2
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHH-HHHhCCCCChhh
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRH-NILFGEPFEPQR 146 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~e-nI~~g~~~~~~~ 146 (280)
..+|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++..|+++ ||.++.... ..
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-----~~~v~q~~~lf~~ti~~~ni~~~~~~~-~~ 183 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-----LSFANHKSHFWLASLADTRAALVDDAT-HA 183 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-----ECGGGTTSGGGGGGGTTCSCEEEEEEC-HH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-----EEEecCccccccccHHHHhhccCcccc-HH
Confidence 45899999999999999999999999999999999998 8888 46789999998889997 888753211 11
Q ss_pred HHHHHHHhhhhhhHhh-CCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 147 YYKTLYNCALNTDIHI-LPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 147 ~~~~~~~~~l~~~l~~-l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.. ..+.. ++.+.. +..|||||||| ||||+.+|+| || |+++|.
T Consensus 184 ~~---------~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~i------Ll----Ts~LD~ 226 (305)
T 2v9p_A 184 CW---------RYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPL------LV----TSNIDV 226 (305)
T ss_dssp HH---------HHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCE------EE----EESSCS
T ss_pred HH---------HHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCE------EE----ECCCCH
Confidence 11 11222 332221 67899999999 9999999944 44 666665
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.80 E-value=7e-20 Score=173.50 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=34.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
..++++++|+|.+| +++|+|||||||||||++|.++..
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999 999999999999999999976653
No 66
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.80 E-value=1e-20 Score=159.96 Aligned_cols=113 Identities=15% Similarity=0.113 Sum_probs=69.7
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC--eEEEEecCCCC--CCCcHHHHHHhCCCCChhhHH
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAYVSQEAWI--TNDTLRHNILFGEPFEPQRYY 148 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G--~ig~v~Q~~~l--~~~Tv~enI~~g~~~~~~~~~ 148 (280)
+|||++++||+++|+||||||||||++++.+-.. .+.. ..++++|++.- +..++++++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~---------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISSDFCRGLMSDDENDQTVTGAAFDVLHY---------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEHHHHHHHHCSSTTCGGGHHHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEccHHHHHHhcCcccchhhHHHHHHHHHH----------
Confidence 6899999999999999999999999998653221 1211 12556665421 11122222211
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
... ... ..+.... .......|||||||++||||++.+| ++|+||||++++|+-
T Consensus 65 -~~~-----~~~---~~g~~~~-~~~~~~~s~g~~qrv~iAral~~~p------~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 65 -IVS-----KRL---QLGKLTV-VDATNVQESARKPLIEMAKDYHCFP------VAVVFNLPEKVCQER 117 (171)
T ss_dssp -HHH-----HHH---HTTCCEE-EESCCCSHHHHHHHHHHHHHTTCEE------EEEEECCCHHHHHHH
T ss_pred -HHH-----HHH---hCCCeEE-EECCCCCHHHHHHHHHHHHHcCCcE------EEEEEeCCHHHHHHH
Confidence 000 000 0111111 2233457999999999999999998 667777777776643
No 67
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.78 E-value=4.2e-21 Score=178.34 Aligned_cols=120 Identities=14% Similarity=0.106 Sum_probs=84.3
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCC-hhh-HHHHHHHhh
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFE-PQR-YYKTLYNCA 155 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~-~~~-~~~~~~~~~ 155 (280)
+++|++++|+||||||||||+++|+|+++|..|. ..++||+|++.+++.|+++|+.+..... ... ....+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~-- 160 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMR-- 160 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHH--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHH--
Confidence 8999999999999999999999999999998775 4689999998776669999987532111 111 1111111
Q ss_pred hhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 156 LNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 156 l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
.+..+..+. ...++.+|||||+||+++|||++.+| ++||+|||+..++
T Consensus 161 ---~L~~l~~~~---~~~~~~~lS~G~~qRv~~a~al~~~p------~ilIlDep~~~~d 208 (312)
T 3aez_A 161 ---FVTSVKSGS---DYACAPVYSHLHYDIIPGAEQVVRHP------DILILEGLNVLQT 208 (312)
T ss_dssp ---HHHHHHTTC---SCEEEEEEETTTTEEEEEEEEEECSC------SEEEEECTTTTCC
T ss_pred ---HHHHhCCCc---ccCCcccCChhhhhhhhhHHHhccCC------CEEEECCccccCC
Confidence 111111111 11334579999999999999999998 5566666666553
No 68
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.77 E-value=9.1e-22 Score=172.87 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=74.0
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC-------------CeEEEEecCCCCCCC-c-HH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE-------------GTCAYVSQEAWITND-T-LR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~-------------G~ig~v~Q~~~l~~~-T-v~ 133 (280)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+. ..++|++|++..+.. + ..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 3589999999999999999999999999999999998 5 999871 125788887643321 1 01
Q ss_pred HHHHhC---CC-C--ChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHH-----HHHHhcCCchhhhh
Q psy850 134 HNILFG---EP-F--EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVAL-----ARALYSNSFEQQTF 202 (280)
Q Consensus 134 enI~~g---~~-~--~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~L-----ARAL~~~p~i~~~~ 202 (280)
+++.++ .. + ......+.+.. +....++ .+||||||||++| ||+++..|
T Consensus 88 ~~l~~~~~~~~~~g~~~~~i~~~l~~------------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~------ 146 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTLKSEYDKAKEQ------------NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPP------ 146 (218)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHT------------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECS------
T ss_pred chhhhhhcccccCCCcHHHHHHHHhC------------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCc------
Confidence 111110 00 0 01111111111 0111111 4699999999999 88888877
Q ss_pred hhhhhccccCCCCce
Q psy850 203 HFLVLLCPCVSLQSI 217 (280)
Q Consensus 203 ~ll~ldep~~~l~~i 217 (280)
++++||||+++++.-
T Consensus 147 ~~~~Lde~~~~~d~~ 161 (218)
T 1z6g_A 147 STDVLLSRLLTRNTE 161 (218)
T ss_dssp CHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHhcCCC
Confidence 788999999988763
No 69
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=1.9e-19 Score=187.71 Aligned_cols=43 Identities=30% Similarity=0.504 Sum_probs=36.9
Q ss_pred ccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHH
Q psy850 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102 (280)
Q Consensus 59 ~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~ 102 (280)
.++++++.. .+|+||||+|++|++++|+|+||||||||+++|+
T Consensus 629 ~L~v~~l~~-~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 629 WLEVVGARE-HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEEEECS-SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEEEecCcc-cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 466666653 3699999999999999999999999999999864
No 70
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.77 E-value=1.8e-19 Score=186.61 Aligned_cols=46 Identities=30% Similarity=0.493 Sum_probs=38.2
Q ss_pred ccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHH-HHcCC
Q psy850 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYA-ILSQL 105 (280)
Q Consensus 59 ~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~-I~Gl~ 105 (280)
.++++++.. .+|+||||+|++|++++|+|+||||||||+++ |+|++
T Consensus 502 ~L~v~~l~~-~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 502 WLELNGVTR-NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEEEEEEEE-TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred eEEEEeeee-cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 366666543 36999999999999999999999999999996 66543
No 71
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=2.6e-19 Score=187.19 Aligned_cols=43 Identities=35% Similarity=0.481 Sum_probs=36.9
Q ss_pred ccccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHH
Q psy850 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102 (280)
Q Consensus 59 ~l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~ 102 (280)
.++++++.. .+|+||||+|++|++++|+|+||||||||+++|+
T Consensus 647 ~L~v~~l~~-~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 647 QLTVVGARE-HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEEEEECS-TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred eEEEecCcc-ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 466666653 3699999999999999999999999999999864
No 72
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.76 E-value=2.5e-21 Score=176.28 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=71.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC----------eEEEEecCCCCC-CCcHHHHHHhCCCCChhhHHHHH
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------TCAYVSQEAWIT-NDTLRHNILFGEPFEPQRYYKTL 151 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G----------~ig~v~Q~~~l~-~~Tv~enI~~g~~~~~~~~~~~~ 151 (280)
.++|+||||||||||+++|+|+..|++|+|.++| .++|++|++.++ ..||.+|+.++.........+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4799999999999999999999999999998876 379999997655 56999999988643322111112
Q ss_pred HHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 152 YNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 152 ~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
........ ......+||||||||+++|||++. ++++|||+.++++.
T Consensus 84 ~~~~~~~~-----------~~~~~~~LS~G~~qrv~iaRal~~---------lllldep~~gL~~l 129 (270)
T 3sop_A 84 EKYINEQY-----------EKFLKEEVNIARKKRIPDTRVHCC---------LYFISPTGHSLRPL 129 (270)
T ss_dssp HHHHHHHH-----------HHHHHHHSCTTCCSSCCCCSCCEE---------EEEECCCSSSCCHH
T ss_pred HHHHHHHH-----------HhhhHHhcCcccchhhhhheeeee---------eEEEecCCCcCCHH
Confidence 11111111 112234699999999999999873 78899999988764
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.74 E-value=5.8e-20 Score=169.91 Aligned_cols=124 Identities=17% Similarity=0.152 Sum_probs=92.3
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------------eEEEEecCCC-CC-C
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------------TCAYVSQEAW-IT-N 129 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------------~ig~v~Q~~~-l~-~ 129 (280)
+.++||++++|++++|+|||||||||++++|+|+++|++|+|.+.| .++|++|++. .+ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 3578999999999999999999999999999999999999999875 1689999876 44 5
Q ss_pred CcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh--hhhh
Q psy850 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH--FLVL 207 (280)
Q Consensus 130 ~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~--ll~l 207 (280)
.++++|+.++... ... ...++. .+......+++.+|| |||++|||||+.+| + +|+|
T Consensus 170 ~~v~e~l~~~~~~----------~~d-~~lldt--~gl~~~~~~~~~eLS---kqr~~iaral~~~P------~e~lLvL 227 (302)
T 3b9q_A 170 TVLSKAVKRGKEE----------GYD-VVLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAP------NEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHT----------TCS-EEEECC--CCCSSCCHHHHHHHH---HHHHHHHTTSTTCC------SEEEEEE
T ss_pred HHHHHHHHHHHHc----------CCc-chHHhc--CCCCcchhHHHHHHH---HHHHHHHHhhccCC------CeeEEEE
Confidence 6899998753100 000 001111 122222334456799 99999999999998 6 8899
Q ss_pred ccccCCCCce
Q psy850 208 LCPCVSLQSI 217 (280)
Q Consensus 208 dep~~~l~~i 217 (280)
| |++++|.+
T Consensus 228 D-ptsglD~~ 236 (302)
T 3b9q_A 228 D-GNTGLNML 236 (302)
T ss_dssp E-GGGGGGGH
T ss_pred e-CCCCcCHH
Confidence 9 99999876
No 74
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.74 E-value=5.9e-20 Score=157.32 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=68.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC-CceEE--E-----CCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHHHHHHh
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRST-AGKLS--R-----EGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNC 154 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p~-~G~I~--i-----~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~ 154 (280)
+++|+||||||||||+++|+|++... .|... . ..+++|++|++ ++.+++ ++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~-------------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSS-------------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEE--------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHh--------------
Confidence 68999999999999999999998522 23211 1 12467887765 111221 000
Q ss_pred hhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHH-----HhcCCchhhhhhhhhhcc--ccCCCCce
Q psy850 155 ALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARA-----LYSNSFEQQTFHFLVLLC--PCVSLQSI 217 (280)
Q Consensus 155 ~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARA-----L~~~p~i~~~~~ll~lde--p~~~l~~i 217 (280)
.. .. ....+++++.+||||||||++|||| ++.+| ++|+||| |++++|..
T Consensus 62 -----~~-~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p------~llilDEigp~~~ld~~ 117 (178)
T 1ye8_A 62 -----KF-FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRR------KVIIIDEIGKMELFSKK 117 (178)
T ss_dssp -----TT-CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTT------CEEEECCCSTTGGGCHH
T ss_pred -----hc-CC--ccccccccccCcCHHHHHHHHHHhhccccccccCC------CEEEEeCCCCcccCCHH
Confidence 00 00 0123456677899999999999996 99988 8899999 99998764
No 75
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.71 E-value=3.2e-18 Score=158.47 Aligned_cols=39 Identities=33% Similarity=0.263 Sum_probs=33.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHh----cCCchhhhhhhhhhccccCCCCce
Q psy850 173 ERGINLSGGQKQRVALARALY----SNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 173 ~~~~~LSGGQrQRV~LARAL~----~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.++.+||||||||++|||||+ .+| ++||||||++++|+.
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~------~~lllDEp~~~LD~~ 257 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPS------PFYVLDEVDSPLDDY 257 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCC------SEEEEESCCSSCCHH
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCC------CEEEEeCCCCCCCHH
Confidence 345689999999999999997 344 789999999999874
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.69 E-value=1.3e-18 Score=164.69 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=92.6
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------------eEEEEecCCC-CC-CC
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------------TCAYVSQEAW-IT-ND 130 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------------~ig~v~Q~~~-l~-~~ 130 (280)
..+||++++|++++|+|||||||||++++|+|+++|++|+|.+.| .++|++|++. .+ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 468999999999999999999999999999999999999999875 1689999875 44 56
Q ss_pred cHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhh--hhhhc
Q psy850 131 TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH--FLVLL 208 (280)
Q Consensus 131 Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~--ll~ld 208 (280)
++++|+.++... ... ...++. .+......+++.+|| |||++|||||+.+| + +|+||
T Consensus 228 tv~e~l~~~~~~----------~~d-~~lldt--~Gl~~~~~~~~~eLS---kqr~~iaral~~~P------~e~lLvLD 285 (359)
T 2og2_A 228 VLSKAVKRGKEE----------GYD-VVLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAP------NEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHT----------TCS-EEEEEC--CCCSSCCHHHHHHHH---HHHHHHHHHSTTCC------SEEEEEEE
T ss_pred hHHHHHHHHHhC----------CCH-HHHHHh--cCCChhhhhHHHHHH---HHHHHHHHHHhcCC------CceEEEEc
Confidence 899998763200 000 001111 122222234455799 99999999999998 6 88899
Q ss_pred cccCCCCce
Q psy850 209 CPCVSLQSI 217 (280)
Q Consensus 209 ep~~~l~~i 217 (280)
|++++|.+
T Consensus 286 -pttglD~~ 293 (359)
T 2og2_A 286 -GNTGLNML 293 (359)
T ss_dssp -GGGGGGGH
T ss_pred -CCCCCCHH
Confidence 99998875
No 77
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.68 E-value=3.4e-18 Score=159.72 Aligned_cols=92 Identities=21% Similarity=0.210 Sum_probs=72.8
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYK 149 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~ 149 (280)
++++++|.+++|++++|+||||||||||+++|+|+++|++|.|.++|..-+ .+.. .++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~-----~~~~--~~~--------------- 217 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI-----VFKH--HKN--------------- 217 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC-----CCSS--CSS---------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc-----cccc--chh---------------
Confidence 689999999999999999999999999999999999999999999864211 0000 000
Q ss_pred HHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 150 TLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 150 ~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
.+.... . |||+||++|||||..+| ++|++|||++
T Consensus 218 ---------~i~~~~------------g--gg~~~r~~la~aL~~~p------~ilildE~~~ 251 (330)
T 2pt7_A 218 ---------YTQLFF------------G--GNITSADCLKSCLRMRP------DRIILGELRS 251 (330)
T ss_dssp ---------EEEEEC------------B--TTBCHHHHHHHHTTSCC------SEEEECCCCS
T ss_pred ---------EEEEEe------------C--CChhHHHHHHHHhhhCC------CEEEEcCCCh
Confidence 000000 0 89999999999999998 7899999998
No 78
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.68 E-value=8.2e-19 Score=155.88 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=73.3
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE---CCeEEEEecCCCCCCCcHHHHHHhCCC--
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR---EGTCAYVSQEAWITNDTLRHNILFGEP-- 141 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i---~G~ig~v~Q~~~l~~~Tv~enI~~g~~-- 141 (280)
.+.+|++|||++++|+++||+||||||||||+++|+|++ |.+.+ ...++|++|+..+...|+.+++.+...
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~ 86 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQY 86 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCC
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhccCC
Confidence 346899999999999999999999999999999999976 44332 235889999964446799988765321
Q ss_pred -CC-hhhH-HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 142 -FE-PQRY-YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 142 -~~-~~~~-~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
+. .... ...+.. .+..+.. ....+...||+||+||+.+ ++++.+| +++|+|||...
T Consensus 87 ~~~~~~~~~~~~~~~-----~L~~l~~----~~~~~~~~ls~g~~~r~~~-~~~~~~~------~~lilDg~~~~ 145 (245)
T 2jeo_A 87 NFDHPDAFDNDLMHR-----TLKNIVE----GKTVEVPTYDFVTHSRLPE-TTVVYPA------DVVLFEGILVF 145 (245)
T ss_dssp CTTSGGGBCHHHHHH-----HHHHHHT----TCCEEECCEETTTTEECSS-CEEECCC------SEEEEECTTTT
T ss_pred CCCCcccccHHHHHH-----HHHHHHC----CCCeecccccccccCccCc-eEEecCC------CEEEEeCcccc
Confidence 11 1110 111111 1110100 1123456799999999988 5777776 55566665543
No 79
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.67 E-value=2.5e-17 Score=155.56 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=35.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCceEE
Q psy850 172 GERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILL 219 (280)
Q Consensus 172 ~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ill 219 (280)
++++.+|||||||||+|||||+...-++..|++|+|||||+++|+.-.
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~ 321 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENK 321 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHH
Confidence 456778999999999999999931111112388999999999987433
No 80
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.57 E-value=1.3e-16 Score=137.25 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=83.5
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCC---CCcHHHHHHhCCCCChhhHHHHHHHh
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT---NDTLRHNILFGEPFEPQRYYKTLYNC 154 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~---~~Tv~enI~~g~~~~~~~~~~~~~~~ 154 (280)
.++|++++|+||||||||||+++|+|++.| .++|++|++.++ ..++++++.+............+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEH 73 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHH
Confidence 578999999999999999999999999876 588999997654 45788887653211111011111111
Q ss_pred hhhhhHhhCCCCCchhhccCCCCCCHHH----HHHHHHHHHHhcCCchhhhhhhhhhccccCCC-CceEEEeeh
Q psy850 155 ALNTDIHILPGGDQTEIGERGINLSGGQ----KQRVALARALYSNSFEQQTFHFLVLLCPCVSL-QSILLMEEV 223 (280)
Q Consensus 155 ~l~~~l~~l~~g~~~~i~~~~~~LSGGQ----rQRV~LARAL~~~p~i~~~~~ll~ldep~~~l-~~illlDE~ 223 (280)
. ..+.. ...+..++..+|+|| +||+++||+++.+| .++++|||+.++ +.++.+|-.
T Consensus 74 l--~~~~~-----~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~------~ll~~de~~~~~~d~~i~ld~~ 134 (211)
T 3asz_A 74 A--QALLR-----GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEG------ILVLYPKELRDLMDLKVFVDAD 134 (211)
T ss_dssp H--HHHHT-----TCCEEECCEETTTTEECSSCEEECCCSEEEEES------TTTTSSHHHHTTCSEEEEEECC
T ss_pred H--HHHHc-----CCCcCCCcccCcccCCCCCeEEeCCCcEEEEee------hhhccCHHHHHhcCEEEEEeCC
Confidence 1 11111 112334566799996 47889999999987 788999999875 667777743
No 81
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.55 E-value=4.1e-16 Score=151.01 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=81.1
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe---------------------EEEEecCC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------------------CAYVSQEA 125 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~---------------------ig~v~Q~~ 125 (280)
+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|. ++|++|+.
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~ 222 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPAD 222 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTT
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCC
Confidence 45689999 999999999999999999999999999999999999998774 58999952
Q ss_pred --CCCCCcHHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCch
Q psy850 126 --WITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFE 198 (280)
Q Consensus 126 --~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i 198 (280)
.+.+.++.+|+.+.. ++.. .. ..... .+-+....||+|| |||+|| +.+|++
T Consensus 223 ~~~~~~~~v~~~~~~~a-----e~~~---~~--~~~v~--------~~ld~l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 223 VSPLLRMQGAAYATRIA-----EDFR---DR--GQHVL--------LIMDSLTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp SCHHHHHHHHHHHHHHH-----HHHH---TT--TCEEE--------EEEECHHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCHHHHHHHHHHHHHHH-----HHHH---hC--CCCHH--------HHHHhHHHHHHHH-HHHHHH---hCCCcc
Confidence 334668888887631 1111 00 00100 0112244699999 999999 788855
No 82
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.54 E-value=6.3e-16 Score=139.92 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=50.5
Q ss_pred cccccccccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CceEEECCe-EEEEec
Q psy850 60 LKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST-AGKLSREGT-CAYVSQ 123 (280)
Q Consensus 60 l~~~~~~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~-~G~I~i~G~-ig~v~Q 123 (280)
+++++++-..+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.++|. +.|++|
T Consensus 6 ~~l~~l~~~~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~ 69 (261)
T 2eyu_A 6 PEFKKLGLPDKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK 69 (261)
T ss_dssp CCGGGSSCCTHHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC
T ss_pred CChHHCCCHHHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecC
Confidence 3444554446899999 9999999999999999999999999999998 999987653 444444
No 83
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.54 E-value=4.1e-17 Score=139.20 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=67.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEECCeEEEEecCCCCCCCcHH-HHHH-----hCCCCC---hhhHHH
Q psy850 82 KLVGICGAVGSGKSALLYAILSQLRST---AGKLSREGTCAYVSQEAWITNDTLR-HNIL-----FGEPFE---PQRYYK 149 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~~p~---~G~I~i~G~ig~v~Q~~~l~~~Tv~-enI~-----~g~~~~---~~~~~~ 149 (280)
++++|+|+||||||||+++|+|+++|. .|.|.++|.-..-...+ ...+.+ ..+. ...... .+...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~--~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~ 80 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKE--GKDSWKIYNSGADVVIASPVKLAFIRRVSEE 80 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--------------CHHHHHHHHTCEEEEECSSEEEEEEECCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCcc--chhHHHHHhcCCceEEECCCcEEEEecCChh
Confidence 689999999999999999999999998 89998876321100000 011222 1222 000000 000000
Q ss_pred HHHHhhhhhhHhh-CCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchh
Q psy850 150 TLYNCALNTDIHI-LPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQ 199 (280)
Q Consensus 150 ~~~~~~l~~~l~~-l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~ 199 (280)
. .+.+...+.. ++ +..+.+.+. ||||||||++||||++.+|++|
T Consensus 81 ~--~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 81 E--GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp H--HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred h--hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 0 2234445555 66 677777774 9999999999999999999776
No 84
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.49 E-value=1.9e-16 Score=136.98 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=41.5
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE---------CCeEEEEecCCCCC-CCcHHHHHH
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR---------EGTCAYVSQEAWIT-NDTLRHNIL 137 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i---------~G~ig~v~Q~~~l~-~~Tv~enI~ 137 (280)
.++++| .+|++|++++|+||||||||||+++|+|+++...+.+.+ ...++|+||++..+ ..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 346777 799999999999999999999999999998522111111 12378999986544 346666553
No 85
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.48 E-value=1.8e-15 Score=127.33 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=61.1
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe--------EEEEecCCCCCCCcHHHHHHh
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------CAYVSQEAWITNDTLRHNILF 138 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~--------ig~v~Q~~~l~~~Tv~enI~~ 138 (280)
..+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|. ..+++|++.++..|+.+|+.+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEELEF 97 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECTTCSCTTHHHH
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccccCCcHHHHHH
Confidence 45799999999999999999999999999999999999 99999988762 126889876667899999853
No 86
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.47 E-value=1.5e-16 Score=146.42 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=63.9
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC-CCCCCceEEECC----------eEEEEecCCCC-CCCcHHH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ-LRSTAGKLSREG----------TCAYVSQEAWI-TNDTLRH 134 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl-~~p~~G~I~i~G----------~ig~v~Q~~~l-~~~Tv~e 134 (280)
.+.++++++|+| +|+||||||||||+++|+|. ..|++| |.+.| .+++++|.... ...++++
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~D 82 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 82 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhh
Confidence 356899999998 99999999999999999998 888888 54432 35788887544 3568888
Q ss_pred HHHhCCCCCh-hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC
Q psy850 135 NILFGEPFEP-QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS 213 (280)
Q Consensus 135 nI~~g~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~ 213 (280)
++.++..... +.+...... + ......+..++|||||||+.+|||++ ++++|||+++
T Consensus 83 t~g~~~~~~~~e~~~~l~~~------l-------~~~~~~~~~~~sgg~rqrv~~ara~~----------ll~ldePt~~ 139 (301)
T 2qnr_A 83 TPGYGDAINCRDCFKTIISY------I-------DEQFERYLHDESGLNRRHIIDNRVHC----------CFYFISPFGH 139 (301)
T ss_dssp EC-----------CTTHHHH------H-------HHHHHHHHHHHTSSCCTTCCCCCCCE----------EEEEECSSSS
T ss_pred hhhhhhhcCcHHHHHHHHHH------H-------HHHHHHHHHHhCHHhhhhhhhhhhhh----------eeeeecCccc
Confidence 7766532110 011001100 0 01122345579999999999999874 6889999875
Q ss_pred -CCce
Q psy850 214 -LQSI 217 (280)
Q Consensus 214 -l~~i 217 (280)
++++
T Consensus 140 ~Ld~~ 144 (301)
T 2qnr_A 140 GLKPL 144 (301)
T ss_dssp SCCHH
T ss_pred CCCHH
Confidence 7664
No 87
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.46 E-value=6e-15 Score=124.56 Aligned_cols=112 Identities=13% Similarity=-0.018 Sum_probs=68.4
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------EEEEecCCCCCCCcHHHHHHhCCCCChh
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQEAWITNDTLRHNILFGEPFEPQ 145 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------ig~v~Q~~~l~~~Tv~enI~~g~~~~~~ 145 (280)
.+++|++++|+||||||||||+++|+|. +..|.|.+++. ++|++|... ...++.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~----- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVA----- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHH-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHH-----
Confidence 4789999999999999999999999998 77899988763 233333221 1246666664310
Q ss_pred hHHHHHHHhhhhhhHhhC-C-CCCchhh--ccCCCCCCHHHHHHHHHHHHHhcCCchh
Q psy850 146 RYYKTLYNCALNTDIHIL-P-GGDQTEI--GERGINLSGGQKQRVALARALYSNSFEQ 199 (280)
Q Consensus 146 ~~~~~~~~~~l~~~l~~l-~-~g~~~~i--~~~~~~LSGGQrQRV~LARAL~~~p~i~ 199 (280)
...........++.. . ....... ..++..+|+|++||+++||++.++|+++
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 77 ---GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp ---HHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred ---HHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 000000000000100 0 0111111 2234579999999999999999988554
No 88
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.46 E-value=5.8e-15 Score=151.73 Aligned_cols=101 Identities=17% Similarity=0.087 Sum_probs=72.8
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCceEEECC--eEEEEecCCCCCCCcHHHHHHhCCCCCh
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-STAGKLSREG--TCAYVSQEAWITNDTLRHNILFGEPFEP 144 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-p~~G~I~i~G--~ig~v~Q~~~l~~~Tv~enI~~g~~~~~ 144 (280)
..+++|++|+ |++++|+||||||||||||+|+|+.. +..|.+.-.. .+++++| .+...++.+|+.
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~--i~~~~~~~d~l~------- 633 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG--IYTRIGASDDLA------- 633 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE--EEEECCC------------
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH--hhccCCHHHHHH-------
Confidence 5688999998 99999999999999999999999874 6777642111 2444444 111223333331
Q ss_pred hhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHH--hcCCchhhhhhhhhhccc---cCCCCce
Q psy850 145 QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL--YSNSFEQQTFHFLVLLCP---CVSLQSI 217 (280)
Q Consensus 145 ~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL--~~~p~i~~~~~ll~ldep---~~~l~~i 217 (280)
..+|+||+|++.+|+++ +.+| +++||||| |+++|..
T Consensus 634 -------------------------------~g~S~~~~e~~~la~il~~a~~p------~LlLLDEpgrGTs~lD~~ 674 (765)
T 1ewq_A 634 -------------------------------GGKSTFMVEMEEVALILKEATEN------SLVLLDEVGRGTSSLDGV 674 (765)
T ss_dssp --------------------------------CCSHHHHHHHHHHHHHHHCCTT------EEEEEESTTTTSCHHHHH
T ss_pred -------------------------------hcccHHHHHHHHHHHHHHhccCC------CEEEEECCCCCCCCcCHH
Confidence 13789999999999999 7777 88999999 8877753
No 89
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.45 E-value=2.1e-14 Score=132.72 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=70.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------------EEEEecCCCCC-CCcHHHHHHhC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------------CAYVSQEAWIT-NDTLRHNILFG 139 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------------ig~v~Q~~~l~-~~Tv~enI~~g 139 (280)
+|++++|+||||||||||+++|+|+++|++|+|.+.|. ++|++|++..+ ..++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999998652 57899987554 45788887642
Q ss_pred CCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCc
Q psy850 140 EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSF 197 (280)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~ 197 (280)
. ...+.. ..++ .. +...... ..++..++||++||||++.+|+
T Consensus 181 ~----------~~~~d~-~llD-t~-G~~~~~~---~~~~eLs~~r~~iaRal~~~P~ 222 (304)
T 1rj9_A 181 K----------ARGYDL-LFVD-TA-GRLHTKH---NLMEELKKVKRAIAKADPEEPK 222 (304)
T ss_dssp H----------HHTCSE-EEEC-CC-CCCTTCH---HHHHHHHHHHHHHHHHCTTCCS
T ss_pred H----------hCCCCE-EEec-CC-CCCCchH---HHHHHHHHHHHHHHHhhcCCCC
Confidence 1 001110 0111 01 1111111 1245566999999999999994
No 90
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.45 E-value=7.5e-17 Score=151.53 Aligned_cols=136 Identities=22% Similarity=0.171 Sum_probs=75.7
Q ss_pred eeeeeeEEeeC--CcEEEEECCCCCcHHHHHHHHHcCCCCCC----ceEEEC----C-----------eEEEEecCCCCC
Q psy850 70 ALVDINFFAPK--GKLVGICGAVGSGKSALLYAILSQLRSTA----GKLSRE----G-----------TCAYVSQEAWIT 128 (280)
Q Consensus 70 vL~~Isl~i~~--GeivaIiGpnGsGKSTLLk~I~Gl~~p~~----G~I~i~----G-----------~ig~v~Q~~~l~ 128 (280)
+.+.|+++|++ |+.++|+||||||||||+++|+|+++|+. |+|.++ + .+++++|++..+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 887652 2 144555554444
Q ss_pred CCcHHHHHHhCCCCC-hhhHHHHHHHhhhhhhHhhCC---CCCchhhc-------cCCCCCCHHHHHHHHHHHHH---hc
Q psy850 129 NDTLRHNILFGEPFE-PQRYYKTLYNCALNTDIHILP---GGDQTEIG-------ERGINLSGGQKQRVALARAL---YS 194 (280)
Q Consensus 129 ~~Tv~enI~~g~~~~-~~~~~~~~~~~~l~~~l~~l~---~g~~~~i~-------~~~~~LSGGQrQRV~LARAL---~~ 194 (280)
..++.+|+.++.... ................+.... .-+...++ ..+..+|+||+||..|+|+| +.
T Consensus 237 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~ 316 (365)
T 1lw7_A 237 AVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLD 316 (365)
T ss_dssp HHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHH
T ss_pred HHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHH
Confidence 456666665543211 011111111000011111100 00111112 23346899999999999999 55
Q ss_pred --CCchhhhhhhhhhcccc
Q psy850 195 --NSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 195 --~p~i~~~~~ll~ldep~ 211 (280)
++ .++++|||+
T Consensus 317 ~~~~------~ililde~~ 329 (365)
T 1lw7_A 317 KYKV------PYIEIESPS 329 (365)
T ss_dssp GGGC------CCEEEECSS
T ss_pred HcCC------CEEEeCCCC
Confidence 34 455555553
No 91
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.43 E-value=6.5e-16 Score=146.42 Aligned_cols=140 Identities=19% Similarity=0.143 Sum_probs=93.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CceEEECC---------eEEEEec-----CCCCCCCcHH
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST-AGKLSREG---------TCAYVSQ-----EAWITNDTLR 133 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~-~G~I~i~G---------~ig~v~Q-----~~~l~~~Tv~ 133 (280)
.+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+ .++|++| ++..+..+++
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHH
Confidence 3566655 7999999999999999999999999999998 89996432 4688999 5556667888
Q ss_pred HHHHhCCCC-------ChhhHHHHHHHhhhh-----------------hhHhhC------------CCCCchhhccCCCC
Q psy850 134 HNILFGEPF-------EPQRYYKTLYNCALN-----------------TDIHIL------------PGGDQTEIGERGIN 177 (280)
Q Consensus 134 enI~~g~~~-------~~~~~~~~~~~~~l~-----------------~~l~~l------------~~g~~~~i~~~~~~ 177 (280)
.|+.+.... +.+.....+..+... ..+... +......+.++...
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~ 283 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLP 283 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEe
Confidence 888764321 333332223222110 000111 11222334455556
Q ss_pred CCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 178 LSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 178 LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+|+| ||+++|++|+.+|.+ .=+|+||.++.++.
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i----~~li~d~~~~~l~~ 316 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAI----RNLIRENKLQQVYS 316 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHH----HHHHHHTCHHHHHH
T ss_pred cCCC--CEEEEEEEeeCCHHH----HHHHHcCCHHHHHH
Confidence 7999 899999999999833 22888988877664
No 92
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.42 E-value=1.6e-15 Score=131.19 Aligned_cols=116 Identities=16% Similarity=0.253 Sum_probs=73.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------eEEEEecCCCCCCCcHHHHHHhCCCCChhhHHH
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------TCAYVSQEAWITNDTLRHNILFGEPFEPQRYYK 149 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~ 149 (280)
|++++|+||||||||||+++|+|+++ ++| |.++| +++|++|+. ..+ ++++.. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~---~------- 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSR---V------- 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEE---C-------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhc---c-------
Confidence 78999999999999999999999999 889 87655 357777764 111 111100 0
Q ss_pred HHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHH-HHHH---HHhcCCchhhhhhhhhhcc--ccCCCCceEEEeeh
Q psy850 150 TLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRV-ALAR---ALYSNSFEQQTFHFLVLLC--PCVSLQSILLMEEV 223 (280)
Q Consensus 150 ~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV-~LAR---AL~~~p~i~~~~~ll~lde--p~~~l~~illlDE~ 223 (280)
. ...........++++...+|+|||+++ ++++ |++.+| ++||+|| |+...+.- .++.+
T Consensus 65 -------~--~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~------dvlilDE~g~~~~~~~~-~~~~l 128 (189)
T 2i3b_A 65 -------G--LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQ------RVCVIDEIGKMELFSQL-FIQAV 128 (189)
T ss_dssp -------C--CCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCC------CCEEECCCSTTTTTCSH-HHHHH
T ss_pred -------c--ccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCC------CEEEEeCCCccccccHH-HHHHH
Confidence 0 000000011245566677999999998 4455 566666 7889999 56544432 34444
Q ss_pred hhhhc
Q psy850 224 NVYVS 228 (280)
Q Consensus 224 ~~~~~ 228 (280)
.-+++
T Consensus 129 ~~~l~ 133 (189)
T 2i3b_A 129 RQTLS 133 (189)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 93
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=8.2e-14 Score=131.80 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=76.4
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCceEEEC-C---------eEEEEecCCCCC-CCcHHHHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR-STAGKLSRE-G---------TCAYVSQEAWIT-NDTLRHNIL 137 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~-p~~G~I~i~-G---------~ig~v~Q~~~l~-~~Tv~enI~ 137 (280)
.++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.+. | .+++++|+..++ ..+++++.+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 35566654 4799999999999999999999999999 999999875 4 478999987665 448887532
Q ss_pred hCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCC
Q psy850 138 FGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196 (280)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p 196 (280)
.+ ...+.. .. .....+..+ +.....+.+..+|| ||+||++||++++...
T Consensus 284 ~~--l~~~e~----~~-~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli~~~ 332 (358)
T 2rcn_A 284 WH--LEPEQI----TQ-GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAIAET 332 (358)
T ss_dssp CC--CCHHHH----HH-TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSSCHH
T ss_pred cC--CCHHHH----HH-HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCCCHH
Confidence 21 111111 11 111222222 23334566778899 9999999999998644
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.42 E-value=4.7e-14 Score=138.75 Aligned_cols=111 Identities=11% Similarity=0.027 Sum_probs=77.7
Q ss_pred eEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHH-hCCCCChhhHHHHHHH
Q psy850 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNIL-FGEPFEPQRYYKTLYN 153 (280)
Q Consensus 75 sl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~-~g~~~~~~~~~~~~~~ 153 (280)
+..|++|++++|+||||||||||+++++|...+. |+ ..+.|++|++. ..+..+.. ++. .. .+ +..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----~vi~~~~ee~~---~~l~~~~~~~g~--~~---~~-~~~ 340 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----RAILFAYEESR---AQLLRNAYSWGM--DF---EE-MER 340 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----CEEEEESSSCH---HHHHHHHHTTSC--CH---HH-HHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----CEEEEEEeCCH---HHHHHHHHHcCC--CH---HH-HHh
Confidence 4589999999999999999999999999998885 43 11456677652 13344332 221 10 00 000
Q ss_pred hhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 154 CALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 154 ~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
.+.......++.+|||||+||+++||++..+| ++||+| |+++++..
T Consensus 341 -----------~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p------~llilD-p~~~Ld~~ 386 (525)
T 1tf7_A 341 -----------QNLLKIVCAYPESAGLEDHLQIIKSEINDFKP------ARIAID-SLSALARG 386 (525)
T ss_dssp -----------TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCC------SEEEEE-CHHHHTSS
T ss_pred -----------CCCEEEEEeccccCCHHHHHHHHHHHHHhhCC------CEEEEc-ChHHHHhh
Confidence 01222334556789999999999999999998 778888 88888775
No 95
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.42 E-value=2.4e-15 Score=130.16 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=73.5
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHh----CCC--CChhhHHHHH
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILF----GEP--FEPQRYYKTL 151 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~----g~~--~~~~~~~~~~ 151 (280)
.++|++++|+||||||||||+++|+|+++|. | ..+++++++...+..+..+++.. +.. ++.......+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-----~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-----LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLC 92 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-----CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-----CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHH
Confidence 5789999999999999999999999999875 4 24677888765554444444321 100 1111111111
Q ss_pred HHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHH-HHHhcCCchhhhhhhhhhcccc
Q psy850 152 YNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALA-RALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 152 ~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LA-RAL~~~p~i~~~~~ll~ldep~ 211 (280)
...... ........++...+|+||+||+++| ++++.++ .++++|||.
T Consensus 93 ~~l~~~-------~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg------~~~l~de~~ 140 (208)
T 3c8u_A 93 HALKHQ-------ERVIYPLFDRARDIAIAGAAEVGPECRVAIIEG------NYLLFDAPG 140 (208)
T ss_dssp HHHHHC-------SCEEEEEEETTTTEEEEEEEEECTTCCEEEEEE------SSTTBCSTT
T ss_pred HHHhcC-------CceecccCCccccCCCCCceEEcCCCcEEEECC------ceeccCCch
Confidence 111100 0112234456667999999999998 8888876 567788874
No 96
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.41 E-value=1.3e-15 Score=129.87 Aligned_cols=135 Identities=12% Similarity=0.039 Sum_probs=71.7
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCCceEEECCeEE-----EEecCCCCCC-----C---c
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-----RSTAGKLSREGTCA-----YVSQEAWITN-----D---T 131 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~-----~p~~G~I~i~G~ig-----~v~Q~~~l~~-----~---T 131 (280)
++++ |.+.+|..++|+|+||||||||++.|+|.. .|+.|.+.+.+.+- .+.+.+-... . .
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 94 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRK 94 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHH
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHH
Confidence 4666 889999999999999999999999999998 78888775422110 1111121100 0 0
Q ss_pred HHHHHH--h--CC-----------CCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHH-HHHHHHHhcC
Q psy850 132 LRHNIL--F--GE-----------PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQR-VALARALYSN 195 (280)
Q Consensus 132 v~enI~--~--g~-----------~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQR-V~LARAL~~~ 195 (280)
.+..+. + .. ..........+.. .+... ....-.+..+...+|+||||| +..|++++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-----~~~~~-~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~ 168 (210)
T 1pui_A 95 WQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIE-----WAVDS-NIAVLVLLTKADKLASGARKAQLNMVREAVLA 168 (210)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH-----HHHHT-TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHH-----HHHHc-CCCeEEEEecccCCCchhHHHHHHHHHHHHHh
Confidence 111110 0 00 0000000111110 01110 001112345556799999999 8999999987
Q ss_pred CchhhhhhhhhhccccCCCCceE
Q psy850 196 SFEQQTFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 196 p~i~~~~~ll~ldep~~~l~~il 218 (280)
+ .++++|||+++++..-
T Consensus 169 ~------~~~~~~~~~Sal~~~~ 185 (210)
T 1pui_A 169 F------NGDVQVETFSSLKKQG 185 (210)
T ss_dssp G------CSCEEEEECBTTTTBS
T ss_pred c------CCCCceEEEeecCCCC
Confidence 6 5678999999998753
No 97
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.41 E-value=7.7e-15 Score=154.91 Aligned_cols=108 Identities=15% Similarity=0.043 Sum_probs=77.8
Q ss_pred ccceeeeeeEEeeC-------CcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEE-EEecCCCCCCCcHHHHHHh
Q psy850 67 RNIALVDINFFAPK-------GKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA-YVSQEAWITNDTLRHNILF 138 (280)
Q Consensus 67 ~~~vL~~Isl~i~~-------GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig-~v~Q~~~l~~~Tv~enI~~ 138 (280)
...+++|++|.+++ |++++|+||||||||||||+| |++.+. .++| ||||++. ..++.++|..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-------aqiG~~Vpq~~~--~l~v~d~I~~ 837 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-------AQMGCYVPAEVC--RLTPIDRVFT 837 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-------HTTTCCEESSEE--EECCCSBEEE
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-------hheeEEeccCcC--CCCHHHHHHH
Confidence 45789999999987 999999999999999999999 988752 2455 9999753 3355555421
Q ss_pred CCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 139 GEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 139 g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.. +....+.....++|+++++ +++|++++.+| +++|||||+++++.
T Consensus 838 ri-------------------------g~~d~~~~~~stf~~em~~-~a~al~la~~~------sLlLLDEp~~Gtd~ 883 (1022)
T 2o8b_B 838 RL-------------------------GASDRIMSGESTFFVELSE-TASILMHATAH------SLVLVDELGRGTAT 883 (1022)
T ss_dssp EC-------------------------C---------CHHHHHHHH-HHHHHHHCCTT------CEEEEECTTTTSCH
T ss_pred Hc-------------------------CCHHHHhhchhhhHHHHHH-HHHHHHhCCCC------cEEEEECCCCCCCh
Confidence 00 0000111123457887775 99999999988 88999999999875
No 98
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.39 E-value=9.7e-13 Score=122.50 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=32.5
Q ss_pred ccCCCCCCHHHHH------HHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 172 GERGINLSGGQKQ------RVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 172 ~~~~~~LSGGQrQ------RV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
..++.+||||||| |+++||||+.+| ++|+||||++++|+.
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p------~~lllDEp~~~LD~~ 288 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEI------SLLILDEPTPYLDEE 288 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTT------CEEEEECCCTTCCHH
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCC------CEEEEECCCCCCCHH
Confidence 3456789999999 567777777776 889999999999874
No 99
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.39 E-value=2e-14 Score=130.43 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=41.8
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc-eEE
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG-KLS 113 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G-~I~ 113 (280)
..+|+++++.+++|++++|+||||||||||++.|+|.+.|.+| .|.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 3579999999999999999999999999999999999998877 553
No 100
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.38 E-value=2.3e-15 Score=138.29 Aligned_cols=126 Identities=14% Similarity=0.099 Sum_probs=79.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCC--------ChhhHHHH
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPF--------EPQRYYKT 150 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~--------~~~~~~~~ 150 (280)
.++.+++|+||+|||||||.+.|.+++.+.... ...+.+|+|+.++++.+.++|+.++... ......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d-- 103 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHD-- 103 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBC--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCC---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhH--
Confidence 568899999999999999999999998763101 1134566999988888999998764210 000000
Q ss_pred HHHhhhhhhHhhCCCCC------chhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 151 LYNCALNTDIHILPGGD------QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 151 ~~~~~l~~~l~~l~~g~------~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
...+...+..++.+. ...+..+...+||||+||+.+|++..-+| ++||+||++.++++.
T Consensus 104 --~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~------~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 104 --MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPV------DIFILEGWFLGFNPI 168 (290)
T ss_dssp --HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSC------SEEEEEESSTTCCCC
T ss_pred --HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCC------CEEEEeCccccCCcc
Confidence 001112233333332 22344556789999999999984433354 667777777766653
No 101
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.37 E-value=3.1e-13 Score=127.11 Aligned_cols=49 Identities=27% Similarity=0.263 Sum_probs=45.7
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G 106 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG 106 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence 45689999 99999999999999999999999999999999999887766
No 102
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.37 E-value=6.4e-14 Score=146.36 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=68.0
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChh
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST-AGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQ 145 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~-~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~ 145 (280)
...+++||+|++++|++++|+||||||||||||+|++..... .| .++|+.... ..+.+.+ +
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------~~vpa~~~~--i~~~d~i-~------- 720 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------SYVPAEEAT--IGIVDGI-F------- 720 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT--------CCBSSSEEE--EECCSEE-E-------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC--------ccccchhhh--hhHHHHH-H-------
Confidence 357899999999999999999999999999999987532110 00 011111000 0000000 0
Q ss_pred hHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 146 RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 146 ~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
..+ +....+.....++|+||+|++.|+++ +.+| +++|||||++++|+.
T Consensus 721 ---------------~~i--g~~d~l~~~~stfs~em~~~~~il~~-a~~p------~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 721 ---------------TRM--GAADNIYKGRSTFMEELTDTAEIIRK-ATSQ------SLVILDELGRGTSTH 768 (918)
T ss_dssp ---------------EEC------------CCHHHHHHHHHHHHHH-CCTT------CEEEEESTTTTSCHH
T ss_pred ---------------HhC--ChHHHHHHhHHHhhHHHHHHHHHHHh-ccCC------CEEEEeCCCCCCCHH
Confidence 000 01111223345799999999999999 6665 899999999999873
No 103
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.36 E-value=4.7e-14 Score=132.95 Aligned_cols=123 Identities=16% Similarity=0.119 Sum_probs=77.8
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------eEEEEe-cCCCC---CCCcHHHH
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------TCAYVS-QEAWI---TNDTLRHN 135 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------~ig~v~-Q~~~l---~~~Tv~en 135 (280)
+++++|.|++|++++|+||||||||||+++|+|+++|++|.|.++| .++|++ |++.. +..|+++|
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~ 244 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATL 244 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHH
Confidence 3899999999999999999999999999999999999999999875 378999 87654 67799999
Q ss_pred HHhCCCCChhhH-HHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHh
Q psy850 136 ILFGEPFEPQRY-YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALY 193 (280)
Q Consensus 136 I~~g~~~~~~~~-~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~ 193 (280)
|.++........ ............+..++.+..+.+......-..+..+|+..+..-.
T Consensus 245 i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 245 LRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp HHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 987643211100 0000000011122223333333333322345778899988776543
No 104
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.36 E-value=5.5e-13 Score=126.09 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=32.0
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHc
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
...+++++|++.+| +++|+|||||||||++++|.+
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 14 YRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp BTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 34578999999999 999999999999999999987
No 105
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=3.3e-14 Score=136.97 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=71.3
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc--eEEEC-------CeEEEEecCCCCC-CCcHHHHH
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG--KLSRE-------GTCAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G--~I~i~-------G~ig~v~Q~~~l~-~~Tv~enI 136 (280)
.+.++++++|+| +|+||||||||||+++|+|...+..| .+.+. ..+++++|...++ ..|+.+|+
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~ 96 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP 96 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeech
Confidence 456899999998 99999999999999999999875444 11111 1367888876554 67899988
Q ss_pred HhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc-CCCC
Q psy850 137 LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC-VSLQ 215 (280)
Q Consensus 137 ~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~-~~l~ 215 (280)
.++........+..+. ..+. ..++.+++||++||||++.+|++. -+|++|||+ .+++
T Consensus 97 g~~~~~~~~~~~~~i~-----~~i~--------------~~~~~~l~qr~~IaRal~~d~~~~---vlL~ldePt~~~L~ 154 (418)
T 2qag_C 97 GFGDAVDNSNCWQPVI-----DYID--------------SKFEDYLNAESRVNRRQMPDNRVQ---CCLYFIAPSGHGLK 154 (418)
T ss_dssp -----------CHHHH-----HHHH--------------HHHHHHTTTSCC-CCCCCCCC-CC---EEEEECCC-CCSCC
T ss_pred hhhhhccchhhHHHHH-----HHHH--------------HHHHHHHHHHHHHHHHhccCCCee---EEEEEecCcccCCC
Confidence 7764321110001110 0110 135677889999999999998321 178899998 4676
Q ss_pred ce
Q psy850 216 SI 217 (280)
Q Consensus 216 ~i 217 (280)
++
T Consensus 155 ~~ 156 (418)
T 2qag_C 155 PL 156 (418)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 106
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.33 E-value=3.7e-14 Score=122.30 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=35.8
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~ 124 (280)
-|++|++++|+||||||||||+++|+|...+..|.....+...|+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 589999999999999999999999999666644433334444444443
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.33 E-value=3.7e-14 Score=133.21 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=35.6
Q ss_pred ceeeee-eEEeeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCC
Q psy850 69 IALVDI-NFFAPKGKLVGICGAVGSGKSALLYAILSQL--RSTA 109 (280)
Q Consensus 69 ~vL~~I-sl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~--~p~~ 109 (280)
..|+.+ .+.|++|++++|+||||||||||++.+++.. +|+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~ 161 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 161 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhc
Confidence 345555 6889999999999999999999999999998 6666
No 108
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.30 E-value=1.7e-12 Score=135.81 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=66.4
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHH--------HcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHh
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAI--------LSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILF 138 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I--------~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~ 138 (280)
...+++|++|++.+|++++|+||||||||||||+| .|.+.|..+.. ++++. .+ +
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----~~~~d------------~i-~ 709 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----VSIVD------------CI-L 709 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----EECCS------------EE-E
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----chHHH------------HH-H
Confidence 34688999999999999999999999999999999 55544433221 11000 00 0
Q ss_pred CCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHH--hcCCchhhhhhhhhhccccCCCCc
Q psy850 139 GEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL--YSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 139 g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL--~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
..+ +.. +.....+|+++++++.+|+++ +.+| +++|||||++++|+
T Consensus 710 ----------------------~~i--g~~---d~l~~~lStf~~e~~~~a~il~~a~~~------sLlLLDEp~~GlD~ 756 (934)
T 3thx_A 710 ----------------------ARV--GAG---DSQLKGVSTFMAEMLETASILRSATKD------SLIIIDELGRGTST 756 (934)
T ss_dssp ----------------------EEC--C------------CHHHHHHHHHHHHHHHCCTT------CEEEEESCSCSSCH
T ss_pred ----------------------Hhc--Cch---hhHHHhHhhhHHHHHHHHHHHHhccCC------cEEEEeCCCCCCCH
Confidence 000 000 011224788888888888888 7766 89999999999986
Q ss_pred e
Q psy850 217 I 217 (280)
Q Consensus 217 i 217 (280)
.
T Consensus 757 ~ 757 (934)
T 3thx_A 757 Y 757 (934)
T ss_dssp H
T ss_pred H
Confidence 4
No 109
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.28 E-value=3.2e-14 Score=137.01 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=74.2
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-----------------EEEEe---------c
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------------CAYVS---------Q 123 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-----------------ig~v~---------Q 123 (280)
+|+++ + .++|++++|+|||||||||||++|+|+++|.+|+|.+.+. +++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 57777 4 3899999999999999999999999999999999976531 23433 7
Q ss_pred CCCCC--C-----CcHHHHHHhCCC-------CC---hhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHH
Q psy850 124 EAWIT--N-----DTLRHNILFGEP-------FE---PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRV 186 (280)
Q Consensus 124 ~~~l~--~-----~Tv~enI~~g~~-------~~---~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV 186 (280)
+|.+. . .|+.+++.++.. .+ .......+.... .... ..+.+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lg-----------l~~~--~~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMG-----------IEPF--LISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHT-----------CCHH--HHHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcC-----------CcHH--HHHHHHHHHHHHH-
Confidence 66431 1 377777754311 00 011111111111 1111 1345699999999
Q ss_pred HHHHHHhcCCchh
Q psy850 187 ALARALYSNSFEQ 199 (280)
Q Consensus 187 ~LARAL~~~p~i~ 199 (280)
|||+|+.+|++.
T Consensus 302 -LaraL~~~p~~~ 313 (418)
T 1p9r_A 302 -LVRTLCPDCKEP 313 (418)
T ss_dssp -EEEEECTTTCEE
T ss_pred -hhhhhcCCCCcc
Confidence 999999999653
No 110
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.23 E-value=9.3e-13 Score=121.17 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=67.7
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE---CCe-------------EEEEecCCCC------CCCcHHH
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR---EGT-------------CAYVSQEAWI------TNDTLRH 134 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i---~G~-------------ig~v~Q~~~l------~~~Tv~e 134 (280)
++.+|++++|+||||||||||+++|+ +.+|..|+|.+ +|+ ++|++|.|.+ .+.|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 44579999999999999999999999 99999999998 552 5899999854 35678 7
Q ss_pred HH--HhCCCCChhhHHHHH--------HHhhhhhhHhhCCCCCch-hhccCCCCCCHHHHHHHHHHH
Q psy850 135 NI--LFGEPFEPQRYYKTL--------YNCALNTDIHILPGGDQT-EIGERGINLSGGQKQRVALAR 190 (280)
Q Consensus 135 nI--~~g~~~~~~~~~~~~--------~~~~l~~~l~~l~~g~~~-~i~~~~~~LSGGQrQRV~LAR 190 (280)
|+ .|+. + ..+.-.. ..|.....++.. +... ....++..|||.+++++.|||
T Consensus 239 ~l~~~f~~-~--~~~~c~~~~~~~~~e~~~~v~~~l~~~--~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFRE-F--LRYQCKYPDCTHTNEPGCAVKEAVKNG--EISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGG-G--HHHHHHSTTCCSSSCTTCHHHHHHHTT--SSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHH-H--HHccCCCCCCCCCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87 3421 0 0000000 011111222211 2222 345667789998888999987
No 111
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.22 E-value=5.2e-12 Score=113.80 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=66.0
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE------CCeEEEEecCCCCCCCcHHHHH-HhCCCCChhhHHH
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR------EGTCAYVSQEAWITNDTLRHNI-LFGEPFEPQRYYK 149 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i------~G~ig~v~Q~~~l~~~Tv~enI-~~g~~~~~~~~~~ 149 (280)
.+++|++++|+||||||||||++.+++.+. .|.+.+ .+.+.|+..+... ..+...+ .++..........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhh
Confidence 478999999999999999999999998654 343322 2345666554321 1121111 1222111111111
Q ss_pred HHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC
Q psy850 150 TLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 150 ~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
..... ... ...+.++..||+||+|++ ++++.+| +++|+|||+.
T Consensus 102 ~~~~l------~l~-----~~~~~~~~~ls~g~~~~i---~~l~~~~------~livlDe~~~ 144 (279)
T 1nlf_A 102 VADGL------LIQ-----PLIGSLPNIMAPEWFDGL---KRAAEGR------RLMVLDTLRR 144 (279)
T ss_dssp HHHHE------EEC-----CCTTSCCCTTSHHHHHHH---HHHHTTC------SEEEEECGGG
T ss_pred ccCce------EEe-----ecCCCCcccCCHHHHHHH---HHhcCCC------CEEEECCHHH
Confidence 11111 111 112345778999998865 6788776 8889999998
No 112
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=3.6e-12 Score=123.07 Aligned_cols=70 Identities=21% Similarity=0.231 Sum_probs=53.3
Q ss_pred eeeeeEEeeCCcE--EEEECCCCCcHHHHHHHHHcCCC---C----CCceEEECCeEEEEecCCCCC-CCcHHHHHHhCC
Q psy850 71 LVDINFFAPKGKL--VGICGAVGSGKSALLYAILSQLR---S----TAGKLSREGTCAYVSQEAWIT-NDTLRHNILFGE 140 (280)
Q Consensus 71 L~~Isl~i~~Gei--vaIiGpnGsGKSTLLk~I~Gl~~---p----~~G~I~i~G~ig~v~Q~~~l~-~~Tv~enI~~g~ 140 (280)
|+++||+|++|++ ++|+||||||||||+++|+|+.- + ..+.. . ..++|++|++.++ ..|+.+|+.++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~-~-~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQ-L-QSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCE-E-EEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccce-E-eeEEEEeecCccccccchhhhhhhhh
Confidence 9999999999999 99999999999999999999851 1 11211 1 1589999997665 679999998886
Q ss_pred CC
Q psy850 141 PF 142 (280)
Q Consensus 141 ~~ 142 (280)
..
T Consensus 108 ~~ 109 (427)
T 2qag_B 108 QI 109 (427)
T ss_dssp -C
T ss_pred cc
Confidence 54
No 113
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.16 E-value=1.8e-14 Score=130.80 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=78.6
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------EEEEecCC-CC-CCCc
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEA-WI-TNDT 131 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------ig~v~Q~~-~l-~~~T 131 (280)
...+++++++.+++| ++|+||||||||||+++|+|+..+ |.|.++|. +++++|.+ .. +..+
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 345789999999999 999999999999999999999876 67777652 22333321 11 1112
Q ss_pred HHHHHHhCCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhcccc
Q psy850 132 LRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211 (280)
Q Consensus 132 v~enI~~g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~ 211 (280)
+.+++...... +.... . ........+...+|||||+||+.|++|+.++|++ +|++.
T Consensus 108 ~~Deid~~~~~---r~~~~---------~----~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~--------LD~al 163 (274)
T 2x8a_A 108 FFDEVDALCPR---RSDRE---------T----GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI--------IDPAI 163 (274)
T ss_dssp EEETCTTTCC-------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG--------SCHHH
T ss_pred eeehhhhhhcc---cCCCc---------c----hHHHHHHHHHHHhhhcccccCCEEEEeecCChhh--------CCHhh
Confidence 22222211100 00000 0 0011122334456999999999999999999854 37765
Q ss_pred C---CCCceEEEeeh
Q psy850 212 V---SLQSILLMEEV 223 (280)
Q Consensus 212 ~---~l~~illlDE~ 223 (280)
. -.+..+.++-+
T Consensus 164 ~r~gRfd~~i~~~~P 178 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLP 178 (274)
T ss_dssp HSTTSSCEEEECCSC
T ss_pred cCcccCCeEEEeCCc
Confidence 4 45665655443
No 114
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.16 E-value=6.5e-13 Score=117.45 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=46.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH---cCCCCCCceEEECCe---------EEEEecCCCC-CCCcHHHHHHh
Q psy850 80 KGKLVGICGAVGSGKSALLYAIL---SQLRSTAGKLSREGT---------CAYVSQEAWI-TNDTLRHNILF 138 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~---Gl~~p~~G~I~i~G~---------ig~v~Q~~~l-~~~Tv~enI~~ 138 (280)
++++++|+||||||||||+++|+ |+..|+.|+|.+++. +.+++|+..+ +..++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47999999999999999999999 999999998876531 3345566544 34578888754
No 115
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.16 E-value=7.5e-13 Score=132.78 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=42.3
Q ss_pred eEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCceEEECC----------------eEEEEecCCCCC-CCcHHHHH
Q psy850 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKLSREG----------------TCAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 75 sl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-~~G~I~i~G----------------~ig~v~Q~~~l~-~~Tv~enI 136 (280)
+|+++. ++|+|||||||||||++|+|+..| ++|.|.++| .++|++|++.++ ..+|++|+
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 455554 999999999999999999999988 799998766 257889987665 45899988
Q ss_pred Hh
Q psy850 137 LF 138 (280)
Q Consensus 137 ~~ 138 (280)
.+
T Consensus 119 ~~ 120 (608)
T 3szr_A 119 NK 120 (608)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 116
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.15 E-value=5.8e-12 Score=130.07 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=35.1
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
...+++|++|+ ++|++++|+||||||||||||+|+|+.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 45689999999 999999999999999999999999864
No 117
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.15 E-value=4.4e-12 Score=119.70 Aligned_cols=36 Identities=36% Similarity=0.390 Sum_probs=32.4
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CceE
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRST-AGKL 112 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~-~G~I 112 (280)
.+.+|++++|+|||||||||||++|+|+++|+ .|.|
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 56889999999999999999999999999987 4555
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.13 E-value=2.1e-11 Score=104.53 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=39.3
Q ss_pred ceeeeeeE-EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy850 69 IALVDINF-FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114 (280)
Q Consensus 69 ~vL~~Isl-~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i 114 (280)
..|+++.. .+++|++++|+||||||||||++.|++...+..|.|.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~ 56 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY 56 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45777776 79999999999999999999999999988777666544
No 119
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.12 E-value=1.4e-13 Score=127.32 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=32.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC--------CCCCceEEECCe
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL--------RSTAGKLSREGT 117 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~--------~p~~G~I~i~G~ 117 (280)
++++|+|+||||||||++.|+|+. .|+.|+|.++|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~ 48 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQ 48 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHH
Confidence 689999999999999999999997 789999988763
No 120
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.11 E-value=2e-11 Score=119.60 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=45.6
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
..+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.++|
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 3579999999999 99999999999999999999999999999999886
No 121
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.11 E-value=3.3e-11 Score=116.00 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=67.2
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC-----------CCCCceEEECC-eEEEEecCCCCCCCcHHHHHHh
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-----------RSTAGKLSREG-TCAYVSQEAWITNDTLRHNILF 138 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~-----------~p~~G~I~i~G-~ig~v~Q~~~l~~~Tv~enI~~ 138 (280)
-++|+|+++.|+.++|+|+|||||||||++|+|.. .|..|.|.+++ ....+.+.+-+... ..++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~~--- 222 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASEG--- 222 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGGS---
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhhh---
Confidence 47899999999999999999999999999999983 34444444443 22233343332211 1111
Q ss_pred CCCCChhhHHHHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCC
Q psy850 139 GEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196 (280)
Q Consensus 139 g~~~~~~~~~~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p 196 (280)
.... ..+.+.+..+. ..+..+. .+ .++..+||+||+||+.+|++|+..|
T Consensus 223 -~~L~-~~fl~~~era~--~lL~vvD---ls--~~~~~~ls~g~~el~~la~aL~~~P 271 (416)
T 1udx_A 223 -KGLG-LEFLRHIARTR--VLLYVLD---AA--DEPLKTLETLRKEVGAYDPALLRRP 271 (416)
T ss_dssp -CCSC-HHHHHHHTSSS--EEEEEEE---TT--SCHHHHHHHHHHHHHHHCHHHHHSC
T ss_pred -hhhh-HHHHHHHHHHH--hhhEEeC---Cc--cCCHHHHHHHHHHHHHHhHHhhcCC
Confidence 1111 11111111111 1111110 01 2334569999999999999999998
No 122
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.09 E-value=2.1e-11 Score=119.74 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=59.3
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------------eEEEEecCCCCC-CC
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------------TCAYVSQEAWIT-ND 130 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------------~ig~v~Q~~~l~-~~ 130 (280)
-+++||++++|++++|+||||||||||+++|+|++++.+|+|.+.+ .++|++|+..++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 4689999999999999999999999999999999999999999853 157899986544 56
Q ss_pred cHHHHHHhC
Q psy850 131 TLRHNILFG 139 (280)
Q Consensus 131 Tv~enI~~g 139 (280)
++++|+.++
T Consensus 363 tV~e~l~~a 371 (503)
T 2yhs_A 363 VIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888988763
No 123
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.08 E-value=1.5e-11 Score=107.08 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=33.0
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHH--cCCCCCCceEEEC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAIL--SQLRSTAGKLSRE 115 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~--Gl~~p~~G~I~i~ 115 (280)
.|++|++++|+||||||||||+++|+ |+.++..|.+.+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 68999999999999999999999999 6656666666554
No 124
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.05 E-value=3.7e-11 Score=112.16 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=52.1
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe-------------------EEEEecCCCCC-CCcHHHHH
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------------CAYVSQEAWIT-NDTLRHNI 136 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~-------------------ig~v~Q~~~l~-~~Tv~enI 136 (280)
..++|++++|+|||||||||++++|+|+++|++|+|.+.|. +.|++|...++ ..++++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34789999999999999999999999999999999998752 34888876554 45888888
Q ss_pred Hh
Q psy850 137 LF 138 (280)
Q Consensus 137 ~~ 138 (280)
.+
T Consensus 205 ~~ 206 (328)
T 3e70_C 205 QH 206 (328)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 125
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.98 E-value=6.1e-11 Score=108.74 Aligned_cols=51 Identities=33% Similarity=0.384 Sum_probs=38.4
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE---CC-------------eEEEEecCCC
Q psy850 76 FFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR---EG-------------TCAYVSQEAW 126 (280)
Q Consensus 76 l~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i---~G-------------~ig~v~Q~~~ 126 (280)
|++.+|++++|+||||||||||+++|+|+.+|+.|+|.+ +| .++|++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 346689999999999999999999999999999999998 54 2589999874
No 126
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.96 E-value=4.6e-11 Score=109.83 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=43.1
Q ss_pred ceeeeeeEEe-------------------eCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCceEEE
Q psy850 69 IALVDINFFA-------------------PKGKLVGICGAVGSGKSALLYAILSQLR--STAGKLSR 114 (280)
Q Consensus 69 ~vL~~Isl~i-------------------~~GeivaIiGpnGsGKSTLLk~I~Gl~~--p~~G~I~i 114 (280)
+++++|+|.+ .+|++++|+||||||||||+++|+|++. |++|+|.+
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 5788999888 8999999999999999999999999998 99999988
No 127
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.90 E-value=3.7e-10 Score=98.63 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=22.9
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHH-cCC
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAIL-SQL 105 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~-Gl~ 105 (280)
..+++||++++|++++|+||||||||||+++|+ |++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 477999999999999999999999999999999 998
No 128
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.89 E-value=5.1e-10 Score=103.49 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=67.1
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHHHHH
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLY 152 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~ 152 (280)
.+++..++|++++|+|||||||||+++.|++.+.+..|+|.+.+ .+.. .....+++. ....
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~------~D~~--r~~a~eqL~-----------~~~~ 156 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA------ADTF--RAAAIEQLK-----------IWGE 156 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE------ECTT--CHHHHHHHH-----------HHHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc------cccc--cHHHHHHHH-----------HHHH
Confidence 45667789999999999999999999999999998877776532 2221 111111110 0000
Q ss_pred HhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHH---HHHHHHhcCCchhhhhhhhhhccccC
Q psy850 153 NCALNTDIHILPGGDQTEIGERGINLSGGQKQRV---ALARALYSNSFEQQTFHFLVLLCPCV 212 (280)
Q Consensus 153 ~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV---~LARAL~~~p~i~~~~~ll~ldep~~ 212 (280)
. ..+.. ...+|+|+.|++ +|++|+..++ |++|+|+|..
T Consensus 157 ~----~gl~~------------~~~~s~~~~~~v~~~al~~a~~~~~------dvvIiDtpg~ 197 (306)
T 1vma_A 157 R----VGATV------------ISHSEGADPAAVAFDAVAHALARNK------DVVIIDTAGR 197 (306)
T ss_dssp H----HTCEE------------ECCSTTCCHHHHHHHHHHHHHHTTC------SEEEEEECCC
T ss_pred H----cCCcE------------EecCCccCHHHHHHHHHHHHHhcCC------CEEEEECCCc
Confidence 0 00100 124689999999 8999998887 7889999864
No 129
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.88 E-value=1.6e-09 Score=92.45 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=63.8
Q ss_pred eeeeeeE-EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHH
Q psy850 70 ALVDINF-FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYY 148 (280)
Q Consensus 70 vL~~Isl-~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~ 148 (280)
.|+.+.. -+++|++++|+||||||||||++.|++ .+ . +.+.|+..+..+....+.+.... .....+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~------~~v~~i~~~~~~~~~~~~~~~~~-~~~~~~--- 74 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-G------KKVAYVDTEGGFSPERLVQMAET-RGLNPE--- 74 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-C------SEEEEEESSCCCCHHHHHHHHHT-TTCCHH---
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-C------CcEEEEECCCCCCHHHHHHHHHh-cCCChH---
Confidence 3555544 589999999999999999999999999 22 2 23445544432211122221110 000000
Q ss_pred HHHHHhhhhhhHhhCCCCCchhhccCCCCCCHHH--HHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 149 KTLYNCALNTDIHILPGGDQTEIGERGINLSGGQ--KQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 149 ~~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQ--rQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.. ...+ ....+++++ +|++..+|+++.+ .++++|+|||+..++.
T Consensus 75 ~~---------~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~-----~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 75 EA---------LSRF----------ILFTPSDFKEQRRVIGSLKKTVDS-----NFALVVVDSITAHYRA 120 (220)
T ss_dssp HH---------HHHE----------EEECCTTTSHHHHHHHHHHHHCCT-----TEEEEEEECCCCCTTG
T ss_pred HH---------hhcE----------EEEecCCHHHHHHHHHHHHHHhhc-----CCCEEEEcCcHHHhhh
Confidence 00 0000 112344553 6788888999875 1388899999988765
No 130
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.87 E-value=3.1e-10 Score=99.87 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=40.2
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEECCe---------EEEEecCCCC
Q psy850 76 FFAPKGKLVGICGAVGSGKSALLYAILSQLRS--TAGKLSREGT---------CAYVSQEAWI 127 (280)
Q Consensus 76 l~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p--~~G~I~i~G~---------ig~v~Q~~~l 127 (280)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.++ ++|+||++..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~ 73 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE 73 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHH
Confidence 35789999999999999999999999999986 6788876542 5677776543
No 131
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.86 E-value=8e-10 Score=93.70 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=36.2
Q ss_pred eEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-------------eEEEEecCCCC
Q psy850 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWI 127 (280)
Q Consensus 75 sl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-------------~ig~v~Q~~~l 127 (280)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+ .++|++|++..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETR 62 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHH
Confidence 56788999999999999999999999999864 344443 25688887543
No 132
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.86 E-value=3e-10 Score=111.59 Aligned_cols=50 Identities=16% Similarity=0.099 Sum_probs=46.7
Q ss_pred ccceeeeeeE-EeeCCcEEEEECCCCCcHHHHHHH--HHcCCCCCCceEEECC
Q psy850 67 RNIALVDINF-FAPKGKLVGICGAVGSGKSALLYA--ILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl-~i~~GeivaIiGpnGsGKSTLLk~--I~Gl~~p~~G~I~i~G 116 (280)
+..+|++|+| .|++|++++|+||||||||||+++ ++|+++|.+|.|+++|
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4568999999 999999999999999999999999 6899999999999987
No 133
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.84 E-value=1.1e-11 Score=114.88 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=53.6
Q ss_pred cceeeeeeEEeeCC-------cEEEEECCCCCcHHHHHHHHHcCC----CCCCceEEEC-------------CeEEEEec
Q psy850 68 NIALVDINFFAPKG-------KLVGICGAVGSGKSALLYAILSQL----RSTAGKLSRE-------------GTCAYVSQ 123 (280)
Q Consensus 68 ~~vL~~Isl~i~~G-------eivaIiGpnGsGKSTLLk~I~Gl~----~p~~G~I~i~-------------G~ig~v~Q 123 (280)
..+++++++.+++| +.++|+||||+|||||+++|+|.+ .+++|.+... ..+.|+.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34678888888776 899999999999999999999998 6677766432 34788888
Q ss_pred CCCCCCCcHHHHHH
Q psy850 124 EAWITNDTLRHNIL 137 (280)
Q Consensus 124 ~~~l~~~Tv~enI~ 137 (280)
...+.. ++.+++.
T Consensus 111 ~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 111 IHRLNK-AVEELLY 123 (334)
T ss_dssp GGGCCH-HHHHHHH
T ss_pred hhhcCH-HHHHHHH
Confidence 765544 6777664
No 134
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.83 E-value=6.3e-10 Score=103.06 Aligned_cols=61 Identities=23% Similarity=0.245 Sum_probs=40.5
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE---CCe------------EEEEecCCCCC-----CCcHHHH
Q psy850 76 FFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR---EGT------------CAYVSQEAWIT-----NDTLRHN 135 (280)
Q Consensus 76 l~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i---~G~------------ig~v~Q~~~l~-----~~Tv~en 135 (280)
+++.+|++++|+||||+|||||+++|+|+.+|..|+|.+ .|+ ++|++|.|.+. ..|+ +|
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 567899999999999999999999999999999999987 442 58999998543 3578 88
Q ss_pred HH
Q psy850 136 IL 137 (280)
Q Consensus 136 I~ 137 (280)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 84
No 135
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.82 E-value=8.9e-10 Score=91.62 Aligned_cols=41 Identities=27% Similarity=0.221 Sum_probs=35.2
Q ss_pred ccCCCCCCHHHHHHHHHH------HHHhcCCchhhhhhhhhhccccCCCCceE
Q psy850 172 GERGINLSGGQKQRVALA------RALYSNSFEQQTFHFLVLLCPCVSLQSIL 218 (280)
Q Consensus 172 ~~~~~~LSGGQrQRV~LA------RAL~~~p~i~~~~~ll~ldep~~~l~~il 218 (280)
.+++.+||||||||++|| |||+.+| ++|+||||++++|..-
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p------~lllLDEPt~~LD~~~ 98 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEI------SLLILDEPTPYLDEER 98 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSC------SEEEEESCSCTTCHHH
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCC------CEEEEECCCccCCHHH
Confidence 456778999999999876 8999887 8899999999998743
No 136
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.82 E-value=9.9e-12 Score=111.74 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=39.7
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
...+++++++.+++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~ 106 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 106 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecH
Confidence 345788999999999 99999999999999999999875 67777654
No 137
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.82 E-value=4.7e-10 Score=117.22 Aligned_cols=108 Identities=19% Similarity=0.109 Sum_probs=64.7
Q ss_pred HHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCC--C---hhhHHHHHHHh-hhhhhHhhCCCCCch-h
Q psy850 98 LYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPF--E---PQRYYKTLYNC-ALNTDIHILPGGDQT-E 170 (280)
Q Consensus 98 Lk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~--~---~~~~~~~~~~~-~l~~~l~~l~~g~~~-~ 170 (280)
..|..+.++|..++|.++|+-- ..+...++.+++.+.... . ........... .....+..+ +... .
T Consensus 385 ~~C~g~rl~~~~~~V~i~G~~i-----~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~v--gL~~l~ 457 (916)
T 3pih_A 385 SVCGGRRLNREALSVKINGLNI-----HEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDV--GLEYLT 457 (916)
T ss_dssp TTTCSCCBCTTGGGEEETTEEH-----HHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTT--TCTTCB
T ss_pred hhcccccCChHhcCcEECCccH-----HHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHc--CCcccc
Confidence 3555667889999999998532 112345777777642111 0 00000111100 001112111 2222 2
Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 171 IGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 171 i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
.++++.+|||||||||+|||||+++|+ +++|||||||++||+
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~----~~lllLDEPT~gLD~ 499 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLT----GVIYVLDEPTIGLHP 499 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCC----SCEEEEECTTTTCCG
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCC----CcEEEEECCccCCCH
Confidence 457788999999999999999999872 358999999999964
No 138
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.81 E-value=4.1e-10 Score=105.10 Aligned_cols=61 Identities=21% Similarity=0.142 Sum_probs=53.3
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC-----------------eEEEEecCCCCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----------------TCAYVSQEAWIT 128 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G-----------------~ig~v~Q~~~l~ 128 (280)
..+|++++|++++|++++|+||||||||||+++|+|++.|++|+|.+.+ +++|++|++.++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 4589999999999999999999999999999999999999999998754 247788876544
No 139
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.70 E-value=2.1e-09 Score=91.60 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 174 RGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 174 ~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
++..||||||||++|||+|+.+| +.++++++||||++++|..
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~--~~~~~~llLDEp~a~LD~~ 102 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQK--FKPAPFYLFDEIDAHLDDA 102 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHH--HSCCSEEEEESTTTTCCHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcc--cCCCCEEEECCCccCCCHH
Confidence 45679999999999999998653 2335789999999999863
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.69 E-value=2.2e-09 Score=105.76 Aligned_cols=49 Identities=24% Similarity=0.170 Sum_probs=45.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCe
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT 117 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ 117 (280)
.+++++++.+++|+.++|+|||||||||||++|+|+++|+.|.|.+.|.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 3678899999999999999999999999999999999999999998763
No 141
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.68 E-value=4.8e-10 Score=99.58 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=34.7
Q ss_pred eEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 75 sl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
+|++.+ ++++|+|||||||||||++|+|++.|++|.|.++|
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 667777 89999999999999999999999999999998765
No 142
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.64 E-value=3.8e-10 Score=112.72 Aligned_cols=59 Identities=22% Similarity=0.126 Sum_probs=48.9
Q ss_pred cccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-ceEEECC--------eEEEEecC
Q psy850 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTA-GKLSREG--------TCAYVSQE 124 (280)
Q Consensus 66 ~~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~-G~I~i~G--------~ig~v~Q~ 124 (280)
+...+++++++.+.+|+.+.|+||||+|||||+++|++++++.. |.+.+.+ .++++++.
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g 112 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPAC 112 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETT
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecc
Confidence 34557899999999999999999999999999999999999887 6666643 35666654
No 143
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.58 E-value=2.5e-08 Score=83.23 Aligned_cols=38 Identities=37% Similarity=0.387 Sum_probs=34.6
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG 110 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G 110 (280)
++++|++.+| +++|+||||||||||+++|.+++.+..|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6889999999 9999999999999999999988777655
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.57 E-value=1.3e-08 Score=87.39 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999875
No 145
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.56 E-value=4.6e-08 Score=89.57 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=37.9
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
++++|+ +|++++|+|+||+||||++..|++.+.+..|+|.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 678888 899999999999999999999999999888887654
No 146
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.53 E-value=2.4e-08 Score=84.45 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=24.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999998
No 147
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.51 E-value=5e-08 Score=82.47 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=29.6
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy850 76 FFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG 110 (280)
Q Consensus 76 l~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G 110 (280)
++|++|++++|+|||||||||++++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 36889999999999999999999999999877555
No 148
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.48 E-value=4.2e-08 Score=102.77 Aligned_cols=42 Identities=33% Similarity=0.398 Sum_probs=36.3
Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCc
Q psy850 171 IGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216 (280)
Q Consensus 171 i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~ 216 (280)
+++...+|||||||||+||+||+.+| .|+++||||||.+|++
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~----~~~llILDEPTagLdp 539 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRL----TGVLYVLDEPSIGLHQ 539 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCC----CSCEEEEECTTTTCCG
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCC----CCCEEEEeCcccCCCH
Confidence 45677889999999999999999985 2378999999999964
No 149
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.43 E-value=6.6e-08 Score=101.53 Aligned_cols=41 Identities=32% Similarity=0.413 Sum_probs=35.7
Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 171 IGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 171 i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+++...+|||||||||+||+||+.+| .++++|||||+.+|+
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~----~~~llILDEPTagLd 555 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGL----VGVLYVLDEPSIGLH 555 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCC----CSCEEEEECTTTTCC
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCC----CCcEEEEeCcccCCC
Confidence 45677889999999999999999985 237899999999996
No 150
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.41 E-value=8.5e-08 Score=81.79 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=30.1
Q ss_pred eEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 75 sl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
-++.++|++++|+||||||||||+++|++.+ |.+.+++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 3567899999999999999999999999976 7777765
No 151
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.39 E-value=9.8e-08 Score=80.20 Aligned_cols=33 Identities=30% Similarity=0.307 Sum_probs=29.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
|++++|+||||||||||+++|++ +..|.+.+++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~ 34 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEG 34 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcc
Confidence 68999999999999999999997 6788888875
No 152
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1.6e-07 Score=80.02 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=24.7
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
..+++||||++++|++++|+||+||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999999999999999999765
No 153
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.37 E-value=2.3e-08 Score=85.31 Aligned_cols=46 Identities=33% Similarity=0.443 Sum_probs=38.6
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE--EECC
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL--SREG 116 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I--~i~G 116 (280)
+.+.+++..++|++++|+|||||||||++++|++.+. ..|.+ .+++
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 3455677778999999999999999999999999987 67877 5553
No 154
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.36 E-value=1.2e-07 Score=79.85 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=28.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCceE
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKL 112 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p-~~G~I 112 (280)
.+|++++|+||||||||||+++|++++++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999998763 34444
No 155
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.34 E-value=1.7e-07 Score=89.58 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=31.6
Q ss_pred EeeCCcEEEEECCCCCcHHHHHH--HHHcCCCCCCc-----eEEECC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLY--AILSQLRSTAG-----KLSREG 116 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk--~I~Gl~~p~~G-----~I~i~G 116 (280)
-|++|+++.|+||||||||||++ ++.+..+++.| .+++++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 47899999999999999999999 44677776444 555554
No 156
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.28 E-value=1.9e-07 Score=96.88 Aligned_cols=41 Identities=39% Similarity=0.446 Sum_probs=35.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCC
Q psy850 171 IGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ 215 (280)
Q Consensus 171 i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~ 215 (280)
+++...+|||||||||+||+||+.+|+ ++++||||||.+|+
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~----~~llILDEPT~~Ld 413 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLF----GVVYVLDEPSAGLH 413 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCC----SCEEEEECTTTTCC
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCC----CeEEEeeCccccCC
Confidence 466778899999999999999999982 25899999999993
No 157
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=2.7e-07 Score=84.59 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=26.9
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCceEEECC
Q psy850 84 VGICGAVGSGKSALLYAILS-QLRSTAGKLSREG 116 (280)
Q Consensus 84 vaIiGpnGsGKSTLLk~I~G-l~~p~~G~I~i~G 116 (280)
+.|+||||+||||++++|++ ++.|..|.+.++|
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~ 72 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV 72 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecc
Confidence 89999999999999999999 7899999998775
No 158
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.27 E-value=6.2e-07 Score=77.39 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=32.0
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHc--CCCC-----CCceEEEC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILS--QLRS-----TAGKLSRE 115 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~G--l~~p-----~~G~I~i~ 115 (280)
-|++|++++|+||||||||||++.|++ ..+| ..|.++++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 478999999999999999999999999 5655 34555544
No 159
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.26 E-value=1.1e-07 Score=79.51 Aligned_cols=36 Identities=33% Similarity=0.489 Sum_probs=32.5
Q ss_pred eEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy850 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG 110 (280)
Q Consensus 75 sl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G 110 (280)
+|.+++|+.++|+||||+|||||+++|++.+.|..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 566788999999999999999999999999877666
No 160
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.25 E-value=1.8e-07 Score=83.22 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=33.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHH---cCCCCCCceEE
Q psy850 79 PKGKLVGICGAVGSGKSALLYAIL---SQLRSTAGKLS 113 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~---Gl~~p~~G~I~ 113 (280)
++|++++|+|||||||||++++|+ |+..++.|.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 789999999999999999999999 99999999987
No 161
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.23 E-value=9.7e-08 Score=85.71 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=35.1
Q ss_pred cceeeeeeEEeeC---CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 68 NIALVDINFFAPK---GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 68 ~~vL~~Isl~i~~---GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
..+|+++||+|++ |++++|+|++||||||+.++|++.+
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999 9999999999999999999998754
No 162
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.22 E-value=4.6e-07 Score=79.17 Aligned_cols=38 Identities=21% Similarity=0.126 Sum_probs=32.5
Q ss_pred eEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 75 sl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
+.+.++|++++|+|+||||||||+++|++. .|+|.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 445689999999999999999999999997 67776654
No 163
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.19 E-value=3e-08 Score=97.44 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=38.6
Q ss_pred ccceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 67 ~~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
...+++++++.+++| +.|+||+|+|||||+++|++... .+.|.+++
T Consensus 52 ~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 52 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 345688899999999 99999999999999999999874 56666654
No 164
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.19 E-value=4.5e-07 Score=74.71 Aligned_cols=35 Identities=37% Similarity=0.517 Sum_probs=30.7
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG 110 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G 110 (280)
+|+++ +|+.++|+||||+|||||+++|++.+.+ .|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 45555 8999999999999999999999999877 45
No 165
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.19 E-value=4.4e-07 Score=77.61 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=33.9
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i 114 (280)
..++|++++|+|+||||||||+++|++++++..|.|.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 36789999999999999999999999999888887754
No 166
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.18 E-value=8.9e-07 Score=76.16 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=27.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 167
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.17 E-value=3e-07 Score=80.91 Aligned_cols=45 Identities=27% Similarity=0.394 Sum_probs=39.1
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
..+++++++.+++| +.|+||||||||||+++|++... .|.|.+++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 45788999999999 99999999999999999999875 67777654
No 168
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.16 E-value=5.6e-07 Score=88.10 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=31.7
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
...+++++|++.+| +++|+|+|||||||||.+|..+
T Consensus 48 f~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp BTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34678899999999 9999999999999999999544
No 169
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.14 E-value=5.3e-07 Score=83.62 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=40.6
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
++++|++++|++++|+||||+||||++..|++.+.+..|+|.+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 68999999999999999999999999999999999888888663
No 170
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.14 E-value=2.3e-07 Score=86.34 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=44.0
Q ss_pred ccceeeeeeEEeeCCc------EEEEECCCCCcHHHHHHHHHcCCCC--CCceEEECCeEEEEecCCCCC
Q psy850 67 RNIALVDINFFAPKGK------LVGICGAVGSGKSALLYAILSQLRS--TAGKLSREGTCAYVSQEAWIT 128 (280)
Q Consensus 67 ~~~vL~~Isl~i~~Ge------ivaIiGpnGsGKSTLLk~I~Gl~~p--~~G~I~i~G~ig~v~Q~~~l~ 128 (280)
...+|++++..+.+++ ++||+||||||||||+++|.+++.+ ..| .++++.++.+..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~------~v~~i~~D~f~~ 135 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP------NVEVITTDGFLY 135 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC------CEEEEEGGGGBC
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC------eEEEEeeccccc
Confidence 3456778888887776 9999999999999999999999874 444 456777776543
No 171
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.13 E-value=9.8e-07 Score=76.66 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=27.0
Q ss_pred eEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 75 sl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45566899999999999999999999998875
No 172
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.10 E-value=1e-06 Score=72.87 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=28.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
.+|++++|+|||||||||++++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 468999999999999999999999865 6665553
No 173
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.10 E-value=5.1e-07 Score=85.68 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=38.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i 114 (280)
.+++++++.+++|++++|+||||||||||+++|+|. ..|.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 578899999999999999999999999999999985 4677755
No 174
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.10 E-value=1.7e-06 Score=73.61 Aligned_cols=43 Identities=28% Similarity=0.516 Sum_probs=36.5
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~ 129 (280)
++++|++++|+|++||||||+++.|++.++ .+.+++|+..++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------NCSVISQDDFFKP 59 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----------TEEEEEGGGGBCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------CcEEEeCCccccC
Confidence 578899999999999999999999999864 2678888876553
No 175
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.08 E-value=3.2e-06 Score=80.67 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=36.4
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHc------------CCCCCCceEEECC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILS------------QLRSTAGKLSREG 116 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~G------------l~~p~~G~I~i~G 116 (280)
.+++|..++|+|+||+|||||+++|+| .+.|+.|.|.+.|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 457899999999999999999999999 6679999999886
No 176
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.08 E-value=8.6e-07 Score=88.04 Aligned_cols=40 Identities=30% Similarity=0.393 Sum_probs=35.9
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc-eEE-ECC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG-KLS-REG 116 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G-~I~-i~G 116 (280)
.+++|++++|+|+||||||||+++|++.+.|+.| .|. ++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999886 674 665
No 177
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.06 E-value=2.2e-06 Score=72.13 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=30.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC-----------CCceEEECCe
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRS-----------TAGKLSREGT 117 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p-----------~~G~I~i~G~ 117 (280)
.++|+|+||||||||++.++|...+ ..|+|.++|.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE
Confidence 6899999999999999999998765 4688888875
No 178
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.03 E-value=2.1e-06 Score=81.90 Aligned_cols=34 Identities=29% Similarity=0.292 Sum_probs=29.5
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC
Q psy850 76 FFAPKGKLVGICGAVGSGKSALLYAILSQLRSTA 109 (280)
Q Consensus 76 l~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~ 109 (280)
+++.+|++++|+|||||||||||++|.++..+.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 5678899999999999999999999999887754
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.99 E-value=5.7e-06 Score=77.89 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCcE-EEEECCCCCcHHHHHHHHHcCCC-----------CCCceEEECCeEEEEecC
Q psy850 80 KGKL-VGICGAVGSGKSALLYAILSQLR-----------STAGKLSREGTCAYVSQE 124 (280)
Q Consensus 80 ~Gei-vaIiGpnGsGKSTLLk~I~Gl~~-----------p~~G~I~i~G~ig~v~Q~ 124 (280)
.|-. ++|+|++|||||||++.|+|... ++.|.|.++|..-.+.+.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT 233 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDT 233 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEEC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeC
Confidence 3444 99999999999999999999875 567888888853333333
No 180
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.95 E-value=2.5e-06 Score=81.40 Aligned_cols=41 Identities=37% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 175 GINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 175 ~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
+..||||||||++||++|+... +..|.+++||||++++|..
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~--~~~~~~lllDEp~~~LD~~ 371 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINS--YQPSPFFVLDEVDAALDIT 371 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHT--SSCCSEEEESSTTTTCCHH
T ss_pred cccCCcchHHHHHHHHHHHHhc--CCCCCEEEeCCCcccCCHH
Confidence 3459999999999999999521 1123788999999999864
No 181
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.92 E-value=3.4e-06 Score=69.29 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
.|++++|+||+||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999997643
No 182
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.91 E-value=6.3e-06 Score=67.75 Aligned_cols=30 Identities=47% Similarity=0.476 Sum_probs=24.8
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHHH
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAIL 102 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~ 102 (280)
++..+++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666654 99999999999999999986
No 183
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.90 E-value=5.8e-06 Score=69.55 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=28.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC-----CC------CceEEECCe
Q psy850 83 LVGICGAVGSGKSALLYAILSQLR-----ST------AGKLSREGT 117 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~-----p~------~G~I~i~G~ 117 (280)
.++|+|+||||||||++.++|... |+ .|+|.++|.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 52 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE
Confidence 579999999999999999999753 33 467888874
No 184
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.89 E-value=1.5e-06 Score=80.75 Aligned_cols=47 Identities=26% Similarity=0.237 Sum_probs=41.4
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i 114 (280)
..+++++++.+.+|.+++|+|++|+|||||++.|++.+.+..++|.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34678899999999999999999999999999999998887776654
No 185
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.86 E-value=4e-06 Score=78.60 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=26.5
Q ss_pred eeeeeEEeeCCcEEEEECCCCCcHHHHHHHHH
Q psy850 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102 (280)
Q Consensus 71 L~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~ 102 (280)
+++..+++.+ .+++|+|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4667777776 599999999999999999874
No 186
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.82 E-value=5.5e-06 Score=68.90 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=29.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc--eEEEC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAG--KLSRE 115 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G--~I~i~ 115 (280)
++|++++|+|++||||||++++|++.+++ .| .|.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 47999999999999999999999998765 45 44444
No 187
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.81 E-value=9.6e-06 Score=71.23 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=30.6
Q ss_pred eeeeeEEee---CCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy850 71 LVDINFFAP---KGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112 (280)
Q Consensus 71 L~~Isl~i~---~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I 112 (280)
|.+++|.+. +|.+++|.||+||||||+++.|+..+.+ .+.+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 667777776 9999999999999999999999998887 5555
No 188
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.80 E-value=6.3e-06 Score=75.41 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=39.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHH
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNI 136 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI 136 (280)
.+|++++|+||||+||||++..|++.+.+..|. ++.++.+++. ..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-----~V~lv~~D~~--r~~a~eqL 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-----KIAFITTDTY--RIAAVEQL 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-----CEEEEECCCS--STTHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----EEEEEecCcc--cchHHHHH
Confidence 579999999999999999999999999887772 4567777663 33444443
No 189
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.77 E-value=3.3e-06 Score=72.44 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=28.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC---CCCCceEEE
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL---RSTAGKLSR 114 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~---~p~~G~I~i 114 (280)
+.+++|+||+||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999998765 666777654
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.71 E-value=1.2e-05 Score=75.14 Aligned_cols=36 Identities=33% Similarity=0.415 Sum_probs=32.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i 114 (280)
+++.+++|+|++|||||||++.|+|.+.+..|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 457899999999999999999999998888887755
No 191
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.66 E-value=3.2e-05 Score=74.38 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=35.4
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG 110 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G 110 (280)
..|+++..-+++|+++.|.|++|+|||||+..|++...+..|
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g 232 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN 232 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 457777777999999999999999999999999887665434
No 192
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.66 E-value=3e-06 Score=87.17 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=60.6
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHHHHHHhhhh
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALN 157 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~~~~~~~l~ 157 (280)
+..|+.+.|+||+||||||++.+++....+..| .|...++.+........+.+.+. ... .....
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g~~ilvl~P~r~La~q~~~~l~-----------~~~-~~~v~ 169 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----ENTQVACTQPRRVAAMSVAQRVA-----------EEM-DVKLG 169 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GTCEEEEEESCHHHHHHHHHHHH-----------HHT-TCCBT
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CCceEEecCchHHHHHHHHHHHH-----------HHh-CCchh
Confidence 567899999999999999999888765544432 12211222211000001111110 000 00000
Q ss_pred hhHhh-CCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccC-CCC
Q psy850 158 TDIHI-LPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCV-SLQ 215 (280)
Q Consensus 158 ~~l~~-l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~-~l~ 215 (280)
..+.. ...........+..-++.|+.+|..++++++.++ +++|+|||+. +++
T Consensus 170 ~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~------~~lIlDEah~R~ld 223 (773)
T 2xau_A 170 EEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRY------SCIILDEAHERTLA 223 (773)
T ss_dssp TTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTE------EEEEECSGGGCCHH
T ss_pred heecceeccccccCCCCCEEEECHHHHHHHHhhCccccCC------CEEEecCccccccc
Confidence 00000 0000000112233458999999999999887776 8889999985 443
No 193
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.65 E-value=9.1e-06 Score=69.64 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=34.3
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCc--eEEEC
Q psy850 76 FFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG--KLSRE 115 (280)
Q Consensus 76 l~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G--~I~i~ 115 (280)
+.+++|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 34678999999999999999999999998887777 66665
No 194
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.65 E-value=6.1e-06 Score=81.44 Aligned_cols=47 Identities=26% Similarity=0.382 Sum_probs=40.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
.++.++++++ +|+.++|+||+|+|||||+++|++.+.+..|.|.+.+
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4677788888 8999999999999999999999999988777776544
No 195
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.61 E-value=3.4e-05 Score=66.35 Aligned_cols=29 Identities=45% Similarity=0.416 Sum_probs=24.1
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHH
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAIL 102 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~ 102 (280)
+..+++.+ .+++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 45566665 599999999999999999874
No 196
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.60 E-value=2.5e-05 Score=72.64 Aligned_cols=45 Identities=29% Similarity=0.371 Sum_probs=34.5
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHc--CCCCCCceEEECC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILS--QLRSTAGKLSREG 116 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~G--l~~p~~G~I~i~G 116 (280)
.+|++++++++ .++|+|++|||||||++.|+| ++++..|.+....
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47899999998 999999999999999999999 6677777665443
No 197
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.58 E-value=1.2e-05 Score=78.72 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=33.3
Q ss_pred CCCC-CHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCCCCce
Q psy850 175 GINL-SGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 175 ~~~L-SGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~l~~i 217 (280)
...| ||||||||+|||||+.+|+ + ++||||||++++|.-
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~---~-~~lilDEp~~gld~~ 433 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGAD---T-PSVVFDEVDAGIGGA 433 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCC---S-SEEEECSCSSSCCTH
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCC---C-CEEEEeCCcCCCCHH
Confidence 4567 9999999999999999872 2 678999999999864
No 198
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.57 E-value=2.6e-05 Score=67.09 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=27.4
Q ss_pred eeee-eEEeeCCcEEEEECCCCCcHHHHHHHH-HcCCC
Q psy850 71 LVDI-NFFAPKGKLVGICGAVGSGKSALLYAI-LSQLR 106 (280)
Q Consensus 71 L~~I-sl~i~~GeivaIiGpnGsGKSTLLk~I-~Gl~~ 106 (280)
|+.+ .--+++|+++.|+||||||||||+..+ .+..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4444 446899999999999999999996555 44443
No 199
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.53 E-value=5.3e-05 Score=73.88 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=29.6
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
..++++++.+++| +.|+||+|+|||||+++|++..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 3566777788887 8899999999999999999854
No 200
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.53 E-value=2.7e-05 Score=65.02 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=31.2
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I 112 (280)
...+|.++.|+|++||||||+.+.|+..+.+..+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 446799999999999999999999999887766655
No 201
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.52 E-value=8.7e-05 Score=69.37 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=71.0
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECCeEEEEecCCCCCCCcHHHHHHhCCCCChhhHHH
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYK 149 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G~ig~v~Q~~~l~~~Tv~enI~~g~~~~~~~~~~ 149 (280)
.|+.+.--+++|+++.|.|++|+|||||+..++.......+ .+.|+.=+ ++..+ ...
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~------~Vl~fSlE-----ms~~q------------l~~ 91 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR------GVAVFSLE-----MSAEQ------------LAL 91 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------EEEEEESS-----SCHHH------------HHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC------eEEEEeCC-----CCHHH------------HHH
Confidence 45555556899999999999999999999887765433222 33443321 22222 111
Q ss_pred HHHHhhhhhhHhhCCCCCchhhccCCCCCCHHHHHHHHHHHHHhcCCchhhhhhhhhhccccCC----------------
Q psy850 150 TLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVS---------------- 213 (280)
Q Consensus 150 ~~~~~~l~~~l~~l~~g~~~~i~~~~~~LSGGQrQRV~LARAL~~~p~i~~~~~ll~ldep~~~---------------- 213 (280)
++........... +.. ..||.++.||+..|...+.+++ +.|.|+|...
T Consensus 92 Rlls~~~~v~~~~--------l~~--g~Ls~~e~~~l~~a~~~l~~~~------l~I~d~~~~si~~i~~~ir~l~~~~g 155 (338)
T 4a1f_A 92 RALSDLTSINMHD--------LES--GRLDDDQWENLAKCFDHLSQKK------LFFYDKSYVRIEQIRLQLRKLKSQHK 155 (338)
T ss_dssp HHHHHHHCCCHHH--------HHH--TCCCHHHHHHHHHHHHHHHHSC------EEEECCTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhCCCHHH--------Hhc--CCCCHHHHHHHHHHHHHHhcCC------eEEeCCCCCcHHHHHHHHHHHHHhcC
Confidence 1111111111111 111 2599999999999998888774 4456666321
Q ss_pred CCceEEEeehhhhhc
Q psy850 214 LQSILLMEEVNVYVS 228 (280)
Q Consensus 214 l~~illlDE~~~~~~ 228 (280)
-..+++.|-++++..
T Consensus 156 g~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 156 ELGIAFIDYLQLMSG 170 (338)
T ss_dssp TEEEEEEEEEECCCT
T ss_pred CCCEEEEechHHhcC
Confidence 245777787776654
No 202
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.50 E-value=4.8e-05 Score=63.74 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=26.4
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
++|++.++|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
No 203
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.49 E-value=5.5e-05 Score=64.04 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
+++|+||+||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
No 204
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.46 E-value=4.1e-05 Score=73.70 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=37.4
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
++++|+ ++++++++|++||||||++..|++.+.+..++|.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 567887 899999999999999999999999999888877653
No 205
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.46 E-value=0.00015 Score=59.61 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=23.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
++|..++|+|++|+|||||++.+++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999864
No 206
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.45 E-value=7.7e-05 Score=62.32 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=20.5
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHc
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
+++++++..++. .++|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678899988877 679999999999999999987
No 207
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.42 E-value=2.7e-05 Score=71.28 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=36.6
Q ss_pred ee-eeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy850 72 VD-INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114 (280)
Q Consensus 72 ~~-Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i 114 (280)
++ ++|+.+ +++++++|++|+||||++..|++.+.+..++|.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45 788876 9999999999999999999999999887777654
No 208
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.40 E-value=5.3e-05 Score=71.33 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=31.9
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I 112 (280)
-+++|+++.|+||+|||||||+..++....+..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999999887766655
No 209
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.40 E-value=5.9e-05 Score=72.21 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=31.9
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
|+.+.+.+|+.++|+||+|||||||++.|++.+.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 8999999999999999999999999999998753
No 210
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.39 E-value=7.6e-05 Score=63.45 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=26.0
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
...+|.+++|+||+||||||+.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999987663
No 211
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.37 E-value=0.00022 Score=68.15 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=30.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC------------CCCceEEECCeE
Q psy850 83 LVGICGAVGSGKSALLYAILSQLR------------STAGKLSREGTC 118 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~------------p~~G~I~i~G~i 118 (280)
.++|+|++|+|||||++.|+|... +..|.+.++|.-
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 799999999999999999999854 567888888863
No 212
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.36 E-value=7.7e-05 Score=62.90 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy850 83 LVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~G 103 (280)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 213
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.33 E-value=0.00037 Score=56.53 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 214
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.31 E-value=4.7e-05 Score=64.19 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=35.8
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC--------CCCCCceEEECC
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ--------LRSTAGKLSREG 116 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl--------~~p~~G~I~i~G 116 (280)
.+++++++..++.+ ++|+|++|+|||||++.+.+- ..++.+.+.+++
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 46778888877774 789999999999999999872 223445666665
No 215
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.31 E-value=0.00025 Score=58.12 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 216
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.19 E-value=0.00012 Score=66.58 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
++.+++|+|++|+|||||++.|+|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999974
No 217
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.18 E-value=0.00019 Score=68.51 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=32.2
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcC-----------CCCCCceEEECC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQ-----------LRSTAGKLSREG 116 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl-----------~~p~~G~I~i~G 116 (280)
.+..+..++|+|++|+|||||+++|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567888999999999999999999998 567778776654
No 218
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.16 E-value=0.00022 Score=59.00 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
.++|+|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
No 219
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.14 E-value=0.00021 Score=59.03 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHc
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999974
No 220
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.14 E-value=3.4e-05 Score=70.78 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=36.5
Q ss_pred cceeeeeeEEeeCCcE--EEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy850 68 NIALVDINFFAPKGKL--VGICGAVGSGKSALLYAILSQLRSTAG 110 (280)
Q Consensus 68 ~~vL~~Isl~i~~Gei--vaIiGpnGsGKSTLLk~I~Gl~~p~~G 110 (280)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3467778888899998 999999999999999999998765544
No 221
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.13 E-value=0.0014 Score=58.38 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++..+.|.||+|+||||++++|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999865
No 222
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.12 E-value=0.0002 Score=60.45 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 223
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.06 E-value=0.00038 Score=65.05 Aligned_cols=37 Identities=41% Similarity=0.444 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHH------HHHHHHhcC-CchhhhhhhhhhccccCCCCce
Q psy850 175 GINLSGGQKQRV------ALARALYSN-SFEQQTFHFLVLLCPCVSLQSI 217 (280)
Q Consensus 175 ~~~LSGGQrQRV------~LARAL~~~-p~i~~~~~ll~ldep~~~l~~i 217 (280)
+..||||||||+ ++||||+.+ | ++||||||++++|.-
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~------~~lllDEp~~~LD~~ 321 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRV------ECIILDEPTVYLDEN 321 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCC------SEEEEESTTTTCCHH
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCC------CeEEEeCCCCcCCHH
Confidence 457999999988 567888887 7 778999999998764
No 224
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.04 E-value=0.0013 Score=56.86 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRSTAG 110 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p~~G 110 (280)
.++|+|++|+|||||++.|+|...+..+
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5799999999999999999998766555
No 225
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.03 E-value=8.7e-05 Score=69.98 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=32.4
Q ss_pred eeeeeeEEeeCCcE--EEEECCCCCcHHHHHHHHHcCC
Q psy850 70 ALVDINFFAPKGKL--VGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 70 vL~~Isl~i~~Gei--vaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++.+++.+++|++ ++|+||+||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 57788888999998 9999999999999999998764
No 226
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.01 E-value=0.00035 Score=60.69 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=23.8
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
+-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999863
No 227
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.01 E-value=0.00021 Score=60.42 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
.+++|+|++|||||||++.|++.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 589999999999999999999876543
No 228
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.99 E-value=0.00039 Score=56.31 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999997653
No 229
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.99 E-value=0.00025 Score=62.05 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=25.4
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455566666665 88999999999999999998764
No 230
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.96 E-value=0.00031 Score=61.98 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=30.3
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEECC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~G 116 (280)
..+++.++.|+|++||||||+.+.|+..+. .+.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 567789999999999999999999998664 24454543
No 231
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.95 E-value=0.00051 Score=56.32 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999987653
No 232
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.94 E-value=0.00031 Score=65.63 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=26.9
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
-+++|+++.|.||+|||||||+..++......
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 47899999999999999999988887655443
No 233
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.90 E-value=0.00096 Score=61.01 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=29.1
Q ss_pred ceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHc
Q psy850 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 69 ~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
..|+.+.--+++|+++.|.|++|+|||||+..++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 34666655689999999999999999999877764
No 234
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.89 E-value=0.00057 Score=56.27 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997643
No 235
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.89 E-value=0.00047 Score=67.86 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=35.6
Q ss_pred eeeEEeeCCcEEEEECCCCCcHHHHHHHHHc--CCCCCCceEEE
Q psy850 73 DINFFAPKGKLVGICGAVGSGKSALLYAILS--QLRSTAGKLSR 114 (280)
Q Consensus 73 ~Isl~i~~GeivaIiGpnGsGKSTLLk~I~G--l~~p~~G~I~i 114 (280)
.+.+++.++..+.|.|++||||||++++|.. ++.++.+++.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l 202 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRF 202 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 4788899999999999999999999999876 55666777755
No 236
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.87 E-value=0.00031 Score=65.67 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=28.2
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCce
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK 111 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~ 111 (280)
+.++++++|.| +|+|++|+|||||++.|.+...+..+.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 34677888876 999999999999999998876554443
No 237
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.87 E-value=0.00037 Score=65.20 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=30.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i 114 (280)
.+..++|+||+||||||+++.|+....+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 56789999999999999999999888777777765
No 238
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.86 E-value=0.00029 Score=71.19 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=30.0
Q ss_pred eEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCceE
Q psy850 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRS--TAGKL 112 (280)
Q Consensus 75 sl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p--~~G~I 112 (280)
+++++++..++|+|++|+|||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 457889999999999999999999999976544 45665
No 239
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.85 E-value=0.00059 Score=54.79 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy850 83 LVGICGAVGSGKSALLYAI 101 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I 101 (280)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999998
No 240
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.84 E-value=0.00058 Score=56.49 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997543
No 241
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.82 E-value=0.00045 Score=71.26 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=29.7
Q ss_pred eEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 75 sl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
+|.+++++.+.|+||+|||||||+++|++.+..
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 446899999999999999999999999998754
No 242
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.81 E-value=0.00025 Score=62.88 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.-+++|+||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999843
No 243
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.73 E-value=0.0002 Score=60.51 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
+++|+|++||||||+++.|...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999887754
No 244
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.72 E-value=0.00095 Score=56.87 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy850 80 KGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
.+-+++|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 245
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.71 E-value=0.0008 Score=56.09 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999975
No 246
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.70 E-value=0.001 Score=55.54 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+|.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 247
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.70 E-value=0.00091 Score=55.61 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998754
No 248
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.69 E-value=0.00055 Score=65.97 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=31.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i 114 (280)
++.+++++||+|+||||++..|+..+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 58999999999999999999999999887776654
No 249
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.67 E-value=0.001 Score=54.85 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997543
No 250
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.65 E-value=0.0009 Score=59.24 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+++|+||+|||||||.+.|+..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998654
No 251
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.64 E-value=0.00088 Score=55.25 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHc
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
.++.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999984
No 252
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.63 E-value=0.0012 Score=55.18 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
+|.+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999875543
No 253
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.61 E-value=0.0023 Score=56.67 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=31.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC-----------CCceEEECCeEEEEecCCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLRS-----------TAGKLSREGTCAYVSQEAWI 127 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~p-----------~~G~I~i~G~ig~v~Q~~~l 127 (280)
.++|+|++|||||||++.++|.... ..+.+.+.+....+.+.|-.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 60 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCc
Confidence 5899999999999999999997531 12334455555556665543
No 254
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.61 E-value=0.0012 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy850 82 KLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~G 103 (280)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.59 E-value=0.0011 Score=56.71 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.+.|+||+|||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999998744
No 256
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.57 E-value=0.0012 Score=55.46 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+|.+++|+|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999997543
No 257
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.57 E-value=0.0012 Score=54.74 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999997543
No 258
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.57 E-value=0.001 Score=54.67 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 259
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.53 E-value=0.0015 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
+.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999988753
No 260
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.52 E-value=0.0014 Score=55.11 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=23.9
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|.+++|+|+.||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998543
No 261
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.50 E-value=0.0013 Score=59.40 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=27.8
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
...+.++.|+||+||||||+.+.|+..++ .+.+.++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is 65 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID 65 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe
Confidence 35678999999999999999999986542 2445454
No 262
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.45 E-value=0.0012 Score=54.08 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=18.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++.++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999997543
No 263
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.45 E-value=0.0024 Score=60.16 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=29.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc-----------CCCCCCceEEECC
Q psy850 81 GKLVGICGAVGSGKSALLYAILS-----------QLRSTAGKLSREG 116 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~G-----------l~~p~~G~I~i~G 116 (280)
|-.++|+|.+|+|||||++.|++ -+.|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3456778777655
No 264
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.41 E-value=0.0034 Score=51.89 Aligned_cols=34 Identities=38% Similarity=0.574 Sum_probs=25.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC-----CCCCCc----eEEECC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ-----LRSTAG----KLSREG 116 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl-----~~p~~G----~I~i~G 116 (280)
.++|+|+.|+|||||++.+++- +.|+.+ .+.+++
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDG 64 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECC
Confidence 5799999999999999766543 456656 445555
No 265
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.41 E-value=0.0011 Score=59.86 Aligned_cols=38 Identities=32% Similarity=0.291 Sum_probs=30.3
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEC
Q psy850 76 FFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115 (280)
Q Consensus 76 l~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I~i~ 115 (280)
+.++++..+.|.||+|+|||||+++|++... .+.+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 4467889999999999999999999998763 3444443
No 266
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.40 E-value=0.0016 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
++.|+|+.||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987553
No 267
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.38 E-value=0.0015 Score=58.29 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=27.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I 112 (280)
...+.|+||+|+||||+.++|++.+.+..+.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 36899999999999999999999887766644
No 268
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.35 E-value=0.002 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998655
No 269
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.34 E-value=0.0027 Score=58.73 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=25.5
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988764
No 270
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.34 E-value=0.0014 Score=56.75 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.7
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHc
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
.+.+|+.+.|+||+||||||++..++.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 346799999999999999998877653
No 271
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.33 E-value=0.0035 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999876
No 272
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.30 E-value=0.002 Score=53.80 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 273
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0021 Score=52.81 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.-.++|+|+.|+|||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999865
No 274
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.29 E-value=0.0016 Score=54.96 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=23.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999987654
No 275
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.28 E-value=0.0026 Score=54.23 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
++|-++.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999997643
No 276
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.27 E-value=0.0022 Score=53.16 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=23.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+.+.+++|+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999997643
No 277
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.25 E-value=0.0022 Score=50.97 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 278
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0025 Score=50.65 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 279
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.22 E-value=0.0034 Score=57.40 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=25.2
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-+++|+++.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999888754
No 280
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.22 E-value=0.0026 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999998764
No 281
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.19 E-value=0.0025 Score=50.33 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998754
No 282
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.17 E-value=0.0026 Score=54.58 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=22.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
No 283
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.17 E-value=0.0036 Score=50.36 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
+.-.++|+|+.|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999874
No 284
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.16 E-value=0.0033 Score=52.76 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+.+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997643
No 285
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.16 E-value=0.0028 Score=53.06 Aligned_cols=27 Identities=37% Similarity=0.464 Sum_probs=23.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
..+.|.||+|+|||||+++|+......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 688999999999999999999876543
No 286
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.16 E-value=0.0031 Score=52.85 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+..+++|+|+.||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999997543
No 287
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.16 E-value=0.0029 Score=49.98 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998764
No 288
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.15 E-value=0.0026 Score=50.27 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 289
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.15 E-value=0.0025 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++++|+.|+|||||++.+++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998653
No 290
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.15 E-value=0.0027 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 291
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.14 E-value=0.0026 Score=51.15 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 292
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.14 E-value=0.0031 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 293
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.13 E-value=0.0024 Score=53.99 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
.+..+.|.||+|+|||||++.++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999876643
No 294
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.12 E-value=0.0027 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
No 295
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.11 E-value=0.0034 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998654
No 296
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.11 E-value=0.0026 Score=50.65 Aligned_cols=24 Identities=38% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.++|+|+.|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 479999999999999999987543
No 297
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.09 E-value=0.0032 Score=53.24 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+||.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 298
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.09 E-value=0.0032 Score=50.17 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
No 299
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.09 E-value=0.0032 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988654
No 300
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.08 E-value=0.003 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 301
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.07 E-value=0.003 Score=50.09 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 302
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.07 E-value=0.0029 Score=51.33 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 303
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.07 E-value=0.0032 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999753
No 304
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.06 E-value=0.0026 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998654
No 305
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.06 E-value=0.003 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998764
No 306
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.04 E-value=0.0028 Score=54.14 Aligned_cols=26 Identities=31% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+.++.|+||.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999997543
No 307
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.04 E-value=0.0039 Score=56.85 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=26.1
Q ss_pred eCCc--EEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 79 PKGK--LVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 79 ~~Ge--ivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
..+. .+.|.||+|+|||||++.+++...+.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 3456 89999999999999999999988765
No 308
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.04 E-value=0.003 Score=51.82 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998763
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.03 E-value=0.0039 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-++++|+|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999753
No 310
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.01 E-value=0.0037 Score=56.13 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 311
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.01 E-value=0.004 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 312
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.01 E-value=0.0036 Score=50.97 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998763
No 313
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.99 E-value=0.003 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+++.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999875
No 314
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.97 E-value=0.0035 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 315
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.97 E-value=0.004 Score=54.69 Aligned_cols=24 Identities=42% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.++|+|++|+|||||++.|+|.-.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999999999998653
No 316
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.97 E-value=0.004 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+||.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 317
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.96 E-value=0.0044 Score=54.76 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.95 E-value=0.0033 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 319
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.94 E-value=0.013 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999874
No 320
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.94 E-value=0.0037 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998643
No 321
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.003 Score=57.22 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=26.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTA 109 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~ 109 (280)
..+..+.|.||+|+|||||++.+++.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999998776543
No 322
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.94 E-value=0.0037 Score=50.77 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 323
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.92 E-value=0.0037 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998864
No 324
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.92 E-value=0.0044 Score=49.88 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998653
No 325
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.90 E-value=0.0038 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 326
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.89 E-value=0.0044 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999753
No 327
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.88 E-value=0.0049 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 479999999999999999998654
No 328
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.87 E-value=0.0041 Score=50.23 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 329
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.86 E-value=0.0026 Score=51.53 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q psy850 80 KGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999874
No 330
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.86 E-value=0.0039 Score=57.70 Aligned_cols=26 Identities=35% Similarity=0.314 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
..-.++|+|++|+|||||++.++|..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999865
No 331
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.84 E-value=0.0073 Score=55.83 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=30.7
Q ss_pred cceeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHc
Q psy850 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 68 ~~vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
...+++..+.+ .|.-+.|+|++|+||||+...+.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 45788888888 789999999999999999998876
No 332
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.84 E-value=0.0047 Score=54.07 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-+++|.|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 333
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.84 E-value=0.0044 Score=49.17 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy850 83 LVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~G 103 (280)
.++|+|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999975
No 334
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.83 E-value=0.0038 Score=50.06 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999854
No 335
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0044 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998643
No 336
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.81 E-value=0.0049 Score=49.36 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998654
No 337
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.79 E-value=0.005 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998653
No 338
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.79 E-value=0.0058 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
++-+++|+||.||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999753
No 339
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.78 E-value=0.0048 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 340
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.78 E-value=0.0052 Score=55.86 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
-+++|+|+.|+|||||++.|+|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999864
No 341
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.77 E-value=0.0063 Score=48.97 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
..+..+.|+||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987653
No 342
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.77 E-value=0.0052 Score=55.86 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++|+|++|+|||||++.++|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 343
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.76 E-value=0.0055 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
..+++|+|+.||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999864
No 344
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.73 E-value=0.0031 Score=57.17 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=19.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+.-+++|.||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999987643
No 345
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.68 E-value=0.0053 Score=50.69 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 346
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.68 E-value=0.0047 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998643
No 347
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.67 E-value=0.0057 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998765
No 348
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.66 E-value=0.006 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 349
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.66 E-value=0.007 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 350
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.66 E-value=0.0064 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997543
No 351
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.65 E-value=0.0064 Score=49.56 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=22.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
++.-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568999999999999999998743
No 352
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.64 E-value=0.0056 Score=50.22 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998654
No 353
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.64 E-value=0.0047 Score=54.87 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|++|+|||||++.|.+.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999987653
No 354
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.63 E-value=0.0059 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.|+|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999754
No 355
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.61 E-value=0.0059 Score=49.32 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998753
No 356
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.61 E-value=0.0057 Score=54.87 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q psy850 81 GKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~G 103 (280)
..+++|+|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 357
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.60 E-value=0.0085 Score=48.57 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999854
No 358
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.59 E-value=0.0067 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 359
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.59 E-value=0.0037 Score=56.53 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
.+..+.|.||+|+|||||+++|++.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35678999999999999999999877544
No 360
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.59 E-value=0.0052 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999754
No 361
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.0054 Score=50.36 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999863
No 362
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0055 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
No 363
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.55 E-value=0.0065 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999997644
No 364
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.54 E-value=0.0036 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
-.++|+|+.|+|||||++.+++..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999874
No 365
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.53 E-value=0.0066 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999754
No 366
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.52 E-value=0.0065 Score=54.38 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.++|+|+.|+|||||++.|+|.-.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
No 367
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.52 E-value=0.0063 Score=49.79 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999865
No 368
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.51 E-value=0.0073 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-.++|+|+.|+|||||++.+.+.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35799999999999999999874
No 369
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.49 E-value=0.0067 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 370
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.0077 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998653
No 371
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.46 E-value=0.0068 Score=51.12 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
-.++|+|+.|+|||||++.+++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 372
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.45 E-value=0.0071 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
=.++|+|+.|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
No 373
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.45 E-value=0.0079 Score=49.49 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
No 374
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.45 E-value=0.0079 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
-.++|+|+.|+|||||++.+++..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 375
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.45 E-value=0.007 Score=48.99 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy850 83 LVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~G 103 (280)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 579999999999999999983
No 376
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.44 E-value=0.0083 Score=52.79 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.5
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+.++.-+.|.||+|+|||||+++++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566779999999999999999999865
No 377
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.44 E-value=0.0082 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy850 82 KLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~G 103 (280)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 378
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.43 E-value=0.011 Score=50.43 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=22.2
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHH
Q psy850 78 APKGKLVGICGAVGSGKSALLYAIL 102 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~ 102 (280)
+++|+++.|.|+.|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999975543
No 379
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.008 Score=49.19 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999854
No 380
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.42 E-value=0.0073 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998643
No 381
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.41 E-value=0.0076 Score=50.05 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
=.++|+|+.|+|||||++.+++..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 467999999999999999998654
No 382
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.41 E-value=0.0076 Score=49.57 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 383
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.41 E-value=0.0072 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
=.++|+|+.|+|||||++.+.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 368999999999999999998754
No 384
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.40 E-value=0.0077 Score=49.77 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 385
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.40 E-value=0.01 Score=51.20 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 386
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.40 E-value=0.0089 Score=54.20 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=24.3
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHc
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
-+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987764
No 387
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.40 E-value=0.009 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 388
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.40 E-value=0.0031 Score=61.44 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=32.6
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~p~~G~I 112 (280)
+++.+ +.+-+|+.++|+||+|+|||||++.|+.......+.|
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 44444 4678999999999999999999999987665444444
No 389
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.40 E-value=0.0061 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 390
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.39 E-value=0.0098 Score=51.49 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=24.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
-+|.++.|.|+.||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999766543
No 391
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.39 E-value=0.0096 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 392
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.0074 Score=49.70 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.39 E-value=0.0078 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 394
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.39 E-value=0.011 Score=55.27 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=23.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++.++.|+||+|||||||...|+..+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356799999999999999999999765
No 395
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.36 E-value=0.0087 Score=49.84 Aligned_cols=21 Identities=33% Similarity=0.378 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy850 83 LVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~G 103 (280)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 396
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.36 E-value=0.0072 Score=56.86 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999875
No 397
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.36 E-value=0.0088 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 398
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.36 E-value=0.0082 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|..|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 399
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.36 E-value=0.0088 Score=56.76 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=24.5
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.-.+..++.|+|++||||||+.+.|+..+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999987643
No 400
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.35 E-value=0.01 Score=47.76 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
=.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998643
No 401
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.33 E-value=0.0083 Score=48.35 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.....+.|+||.|+|||||++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456778999999999999999987654
No 402
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.33 E-value=0.01 Score=49.02 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 403
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.32 E-value=0.0073 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998643
No 404
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.32 E-value=0.0077 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 405
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.32 E-value=0.011 Score=49.05 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
..+.|.||.|+|||||++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3889999999999999999987654
No 406
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.31 E-value=0.01 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.++|+|+.|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998643
No 407
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.0076 Score=50.84 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988754
No 408
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.28 E-value=0.0091 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999997643
No 409
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.28 E-value=0.0087 Score=52.56 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=21.9
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
..+|.++.|.|+.||||||+.+.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999976654
No 410
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.25 E-value=0.01 Score=52.94 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=22.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy850 82 KLVGICGAVGSGKSALLYAILSQLRSTAG 110 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~~p~~G 110 (280)
-.++++|.+|+|||||++.|.|......|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 48899999999999999999987654333
No 411
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.25 E-value=0.0076 Score=48.63 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
No 412
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.21 E-value=0.011 Score=51.22 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998765
No 413
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.20 E-value=0.009 Score=55.86 Aligned_cols=28 Identities=32% Similarity=0.605 Sum_probs=24.9
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++|+++.|.||+|+|||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988777544
No 414
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.18 E-value=0.0091 Score=52.79 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.++|+|..|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999998753
No 415
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.18 E-value=0.011 Score=48.72 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5799999999999999888754
No 416
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.18 E-value=0.011 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 417
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.0095 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 418
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.15 E-value=0.014 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998654
No 419
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.14 E-value=0.011 Score=52.08 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.+|.+++|.|+.||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999977654
No 420
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.12 E-value=0.0073 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999987643
No 421
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.11 E-value=0.011 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.++|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 422
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.10 E-value=0.011 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987553
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.08 E-value=0.01 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 424
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.07 E-value=0.013 Score=50.82 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
+|.++.+.|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 425
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.06 E-value=0.011 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.|+|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999865
No 426
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.06 E-value=0.014 Score=50.44 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=23.5
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
++...-+.|.||.|+||||+.++++...
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455668899999999999999998754
No 427
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.04 E-value=0.011 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 428
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.02 E-value=0.011 Score=51.49 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.7
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.+++..++.|+||.||||+|..+.|+-.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4566789999999999999999988743
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.02 E-value=0.014 Score=54.08 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998654
No 430
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.012 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999865
No 431
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.00 E-value=0.011 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998743
No 432
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.98 E-value=0.02 Score=49.85 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=27.4
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++..-+.+ .|..+.|+||+|+|||||...|+..
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 455555554 6889999999999999999988764
No 433
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.96 E-value=0.0036 Score=54.77 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=24.6
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++.+..+.| +.|.||+|+|||||+++|+...
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3344445555 7799999999999999998754
No 434
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.94 E-value=0.0089 Score=52.55 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=23.7
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
..++.+++|.|+.||||||+.+.|+..+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3577899999999999999999988765
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.93 E-value=0.016 Score=50.71 Aligned_cols=28 Identities=25% Similarity=0.333 Sum_probs=24.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.+|.++.|.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999986554
No 436
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.92 E-value=0.0048 Score=63.58 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=29.1
Q ss_pred eeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 74 Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.++.+.+++.+.|+||+|+|||||.++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356778999999999999999999999998764
No 437
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.91 E-value=0.012 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
-.++|+|+.|+|||||++.++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999888654
No 438
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.90 E-value=0.015 Score=50.61 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
.+|.++.+.|+.||||||+.+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999877654
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.85 E-value=0.015 Score=53.85 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998755
No 440
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.82 E-value=0.0061 Score=50.28 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=4.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998875
No 441
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.82 E-value=0.0068 Score=50.89 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+++..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 442
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.77 E-value=0.018 Score=49.37 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 443
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.015 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 444
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.75 E-value=0.0055 Score=55.26 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.+.|.||+|+||||+++++++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999988753
No 445
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.70 E-value=0.013 Score=55.92 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999884
No 446
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.69 E-value=0.015 Score=48.48 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999997643
No 447
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.69 E-value=0.014 Score=55.77 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+..+.|.||+|+|||||+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999866
No 448
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.68 E-value=0.011 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=19.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy850 82 KLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~G 103 (280)
=.++|+|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999864
No 449
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.60 E-value=0.016 Score=48.43 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q psy850 82 KLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~G 103 (280)
=.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999988874
No 450
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.56 E-value=0.019 Score=48.53 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999998764
No 451
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.54 E-value=0.0054 Score=58.91 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=26.6
Q ss_pred EEeeCC--cEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 76 FFAPKG--KLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 76 l~i~~G--eivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
|.+.++ .+++|+|++|+||||+...|++.+...
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 444434 699999999999999999999877643
No 452
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.53 E-value=0.022 Score=47.94 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCCcHHHHH-HHHH
Q psy850 80 KGKLVGICGAVGSGKSALL-YAIL 102 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLL-k~I~ 102 (280)
+|.++.++||.|+||||++ +.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999997 5443
No 453
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.51 E-value=0.021 Score=47.00 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998654
No 454
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.50 E-value=0.018 Score=55.51 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
++.+++++|++|+||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999999998777643
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.50 E-value=0.023 Score=52.51 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999999998654
No 456
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.42 E-value=0.018 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy850 83 LVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999854
No 457
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.40 E-value=0.018 Score=52.07 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987664
No 458
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.37 E-value=0.03 Score=44.72 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
.+.-+.|.||.|+|||++.++|.......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 44568999999999999999998876443
No 459
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.13 E-value=0.026 Score=53.81 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=29.3
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
.|+.+.--+++|+++.|.|++|+|||||+..++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3444444589999999999999999999988776543
No 460
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.11 E-value=0.03 Score=48.22 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
++.|+||.||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987543
No 461
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.08 E-value=0.025 Score=52.33 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
+.-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999987653
No 462
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.03 E-value=0.035 Score=50.22 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+-.++|+|+.|+|||||++.+.+-.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999988763
No 463
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.02 E-value=0.031 Score=49.54 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++.-+.|.||.|+||||+.++++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445679999999999999999887665
No 464
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.98 E-value=0.037 Score=49.83 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
+-.++|+|.+|+|||||++.|.|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34689999999999999999998753
No 465
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.97 E-value=0.035 Score=47.59 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999887664
No 466
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.88 E-value=0.031 Score=53.43 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+++|+||+|||||||...|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999887543
No 467
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.87 E-value=0.025 Score=53.06 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=24.1
Q ss_pred EeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 77 FAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 77 ~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-+++|+++.|.||.|+|||||...++-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3689999999999999999998776543
No 468
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.87 E-value=0.034 Score=50.72 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+..-+.|.||.|+|||+|.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
No 469
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.85 E-value=0.031 Score=50.80 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=25.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
.+|..+.|.||.|+||||+.+.++..+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34678999999999999999999987653
No 470
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.87 E-value=0.011 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
=.++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 45899999999999999888753
No 471
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.73 E-value=0.04 Score=49.06 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
|.++.|.||.|+|||||++.++...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc
Confidence 5899999999999999999988653
No 472
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.69 E-value=0.038 Score=49.65 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+...+.|.||.|+|||+|.++|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567888999999999999999765
No 473
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.67 E-value=0.038 Score=51.38 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=25.3
Q ss_pred EEeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 76 FFAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 76 l~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
--+++|.++.|.||.|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35788999999999999999999988753
No 474
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.63 E-value=0.024 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|..|+|||||++.|+|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 475
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.61 E-value=0.0072 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|+.|+|||||++.+++..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999988754
No 476
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.58 E-value=0.06 Score=46.89 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=23.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLRST 108 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~p~ 108 (280)
+.-+.|.||.|+|||++.+.|.......
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~ 56 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRW 56 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCcc
Confidence 4568899999999999999999876543
No 477
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.57 E-value=0.032 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
No 478
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.56 E-value=0.039 Score=48.52 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+.-+.|.||.|+||||+.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999998766
No 479
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.56 E-value=0.024 Score=47.71 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q psy850 83 LVGICGAVGSGKSALLYA-ILSQ 104 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~-I~Gl 104 (280)
.++|+|+.|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999998 5443
No 480
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.55 E-value=0.039 Score=48.40 Aligned_cols=27 Identities=30% Similarity=0.156 Sum_probs=22.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+..-+.|.||.|+|||||.++|+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344578899999999999999998753
No 481
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.52 E-value=0.046 Score=49.66 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
+.-+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999987654
No 482
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.51 E-value=0.061 Score=45.86 Aligned_cols=33 Identities=24% Similarity=0.154 Sum_probs=25.5
Q ss_pred eeeeeeEEeeCCcEEEEECCCCCcHHHHHHHHHc
Q psy850 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILS 103 (280)
Q Consensus 70 vL~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~G 103 (280)
.++..-+. -.|.-+.|.|++|+|||||...+..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45444444 4688999999999999999887764
No 483
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.51 E-value=0.042 Score=49.95 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998765
No 484
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.42 E-value=0.019 Score=55.08 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=24.2
Q ss_pred eeCCc--EEEEECCCCCcHHHHHHHHHcCCCC
Q psy850 78 APKGK--LVGICGAVGSGKSALLYAILSQLRS 107 (280)
Q Consensus 78 i~~Ge--ivaIiGpnGsGKSTLLk~I~Gl~~p 107 (280)
+..|. -+.|.||+|+|||||.++|+.....
T Consensus 45 i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 45 IEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp HHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34444 4899999999999999999987644
No 485
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.37 E-value=0.038 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
++..++++|++|+|||||++.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4668999999999999999999986
No 486
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.35 E-value=0.041 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++|+|..++|||||++.|+|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999864
No 487
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.34 E-value=0.051 Score=49.16 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+..-+.|.||.|+|||+|.++|+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45568999999999999999998764
No 488
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=93.30 E-value=0.037 Score=54.54 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 81 GKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 81 GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
--.++|+|..|+|||||++.|+|.-
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3489999999999999999999864
No 489
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.27 E-value=0.053 Score=49.98 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.+..-+.|.||.|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999998765
No 490
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.27 E-value=0.034 Score=48.58 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=25.0
Q ss_pred eeCCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 78 APKGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 78 i~~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+++...+.|.||.|+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6666789999999999999999999875
No 491
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.23 E-value=0.046 Score=50.19 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
++.-+.|.||+|+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999866
No 492
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=93.16 E-value=0.05 Score=50.46 Aligned_cols=33 Identities=30% Similarity=0.197 Sum_probs=26.5
Q ss_pred eeeeEEeeCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 72 ~~Isl~i~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
..+.++++---.++|+|..++|||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 345566665556899999999999999999864
No 493
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.11 E-value=0.03 Score=54.13 Aligned_cols=25 Identities=40% Similarity=0.436 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.|-.++|+|+.|+|||||++.+++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4556999999999999999999875
No 494
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.95 E-value=0.053 Score=48.82 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
..+.|.||.|+|||||++.|+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 358899999999999999998654
No 495
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=92.93 E-value=0.058 Score=50.64 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy850 83 LVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 83 ivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
.++++|+.|+|||||++.|+|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 57999999999999999999843
No 496
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.88 E-value=0.04 Score=51.46 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
++..++++|.+|+|||||++.|.|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5678999999999999999999986
No 497
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.81 E-value=0.071 Score=46.58 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=20.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl 104 (280)
.+|.++.+.||.|+||||++.-++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999977555433
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.79 E-value=0.066 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=19.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q psy850 82 KLVGICGAVGSGKSALLYAILSQ 104 (280)
Q Consensus 82 eivaIiGpnGsGKSTLLk~I~Gl 104 (280)
-.+||+||.||||||+.+.|+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 46799999999999999988643
No 499
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.79 E-value=0.061 Score=53.34 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q psy850 79 PKGKLVGICGAVGSGKSALLYAILSQLR 106 (280)
Q Consensus 79 ~~GeivaIiGpnGsGKSTLLk~I~Gl~~ 106 (280)
++|.++.|+|++||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999986543
No 500
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.74 E-value=0.064 Score=53.92 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q psy850 80 KGKLVGICGAVGSGKSALLYAILSQL 105 (280)
Q Consensus 80 ~GeivaIiGpnGsGKSTLLk~I~Gl~ 105 (280)
+|.++.|+|.+||||||+.+.|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998654
Done!