RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy850
(280 letters)
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 216 bits (553), Expect = 9e-71
Identities = 78/134 (58%), Positives = 99/134 (73%)
Query: 63 EDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVS 122
+ E + L DIN PKG+LV I G VGSGKS+LL A+L +L +G +S G+ AYVS
Sbjct: 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVS 72
Query: 123 QEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQ 182
QE WI N T+R NILFG+PF+ +RY K + CAL D+ ILP GD TEIGE+GINLSGGQ
Sbjct: 73 QEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQ 132
Query: 183 KQRVALARALYSNS 196
KQR++LARA+YS++
Sbjct: 133 KQRISLARAVYSDA 146
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 167 bits (424), Expect = 8e-47
Identities = 68/123 (55%), Positives = 90/123 (73%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLR 133
I F P+G LV + G VG GKS+LL A+L+++ G + +G+ AYV Q+AWI ND+LR
Sbjct: 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLR 716
Query: 134 HNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALY 193
NILFG+ + Y + L CAL D+ ILP GD+TEIGE+G+NLSGGQKQRV+LARA+Y
Sbjct: 717 ENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 776
Query: 194 SNS 196
SN+
Sbjct: 777 SNA 779
Score = 50.7 bits (121), Expect = 4e-07
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------- 117
++ L IN G+ VGI G G+GKS+L + S G++ +G
Sbjct: 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358
Query: 118 ---CAYVSQEAWITNDTLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEI 171
+ Q+ + + +LR N+ +PF + + L L T + LP E
Sbjct: 1359 RFKITIIPQDPVLFSGSLRMNL---DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHEC 1415
Query: 172 GERGINLSGGQKQRVALARALYSNS 196
E G NLS GQ+Q V LARAL +
Sbjct: 1416 AEGGENLSVGQRQLVCLARALLRKT 1440
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 166 bits (421), Expect = 2e-46
Identities = 83/189 (43%), Positives = 107/189 (56%), Gaps = 39/189 (20%)
Query: 11 PIDKS-SAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNI 69
P++ A+SI G F WD S E T
Sbjct: 607 PLEPGLPAISIKNGYFSWD-----------------------SKAERPT----------- 632
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL--RSTAGKLSREGTCAYVSQEAWI 127
L +IN P G LV I G+ G GK++L+ A+L +L RS A + R GT AYV Q +WI
Sbjct: 633 -LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR-GTVAYVPQVSWI 690
Query: 128 TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVA 187
N T+R NILFG PF+P+RY + + AL D+ +LPGGD TEIGERG+N+SGGQKQRV+
Sbjct: 691 FNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750
Query: 188 LARALYSNS 196
+ARA+YSNS
Sbjct: 751 MARAVYSNS 759
Score = 35.1 bits (81), Expect = 0.046
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 19/125 (15%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAYVSQEAWITND 130
VGI G G+GKS++L A+ + G++ +G + Q + +
Sbjct: 1268 VGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG 1327
Query: 131 TLRHNILFGEPFEPQR---YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVA 187
T+R N+ +PF +++L L I G E+ E G N S GQ+Q ++
Sbjct: 1328 TVRFNL---DPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384
Query: 188 LARAL 192
LARAL
Sbjct: 1385 LARAL 1389
Score = 31.6 bits (72), Expect = 0.59
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 214 LQSILLMEEVNVYVSKPIDKS-SAVSIAGGSFLWDTLLDSSKTSGSN--IAGGSFL 266
L+ +LL EE + + P++ A+SI G F WD+ + S N + GS +
Sbjct: 591 LEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLV 646
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 137 bits (346), Expect = 1e-39
Identities = 66/143 (46%), Positives = 85/143 (59%), Gaps = 17/143 (11%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-----------------S 113
L +IN P G+L I G VG GKS+LL AIL ++++ GK+
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 114 REGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGE 173
+ AY +Q+ W+ N T+ NI FG PF QRY C+L DI +LP GDQTEIGE
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 174 RGINLSGGQKQRVALARALYSNS 196
RGINLSGGQ+QR+ +ARALY N+
Sbjct: 137 RGINLSGGQRQRICVARALYQNT 159
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 142 bits (361), Expect = 2e-38
Identities = 62/132 (46%), Positives = 87/132 (65%)
Query: 64 DVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQ 123
++E + L D++ P+GKL + GA GSGKS LL ++LSQ + G++ E + AYV Q
Sbjct: 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQ 728
Query: 124 EAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQK 183
+AWI N T+R NILF + + R + L D+ L GG +TEIGE+G+NLSGGQK
Sbjct: 729 QAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788
Query: 184 QRVALARALYSN 195
RV+LARA+Y+N
Sbjct: 789 ARVSLARAVYAN 800
Score = 38.2 bits (89), Expect = 0.004
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Query: 78 APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TCAY-----------VSQE 124
AP+ K VGI G GSGKS LL + + G++ G AY + Q+
Sbjct: 1334 APREK-VGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQD 1392
Query: 125 AWITNDTLRHNILFGEPF---EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGG 181
+ + T+R N+ +PF + L L + G + + E G N S G
Sbjct: 1393 PVLFDGTVRQNV---DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVG 1449
Query: 182 QKQRVALARAL 192
Q+Q + +ARAL
Sbjct: 1450 QRQLMCMARAL 1460
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 140 bits (353), Expect = 2e-37
Identities = 72/146 (49%), Positives = 93/146 (63%), Gaps = 7/146 (4%)
Query: 53 NGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR--STAG 110
NG S K L DIN P G LV I G G GK++L+ A+L +L T+
Sbjct: 619 NGYFSWDSKTS----KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674
Query: 111 KLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTE 170
+ R G+ AYV Q +WI N T+R NILFG FE +RY++ + AL D+ +LPG D TE
Sbjct: 675 VVIR-GSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTE 733
Query: 171 IGERGINLSGGQKQRVALARALYSNS 196
IGERG+N+SGGQKQRV++ARA+YSNS
Sbjct: 734 IGERGVNISGGQKQRVSMARAVYSNS 759
Score = 45.7 bits (108), Expect = 2e-05
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------TCAY 120
++FF + VG+ G G+GKS++L A+ + G++ + +
Sbjct: 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSI 1314
Query: 121 VSQEAWITNDTLRHNILFGEPFEPQR---YYKTLYNCALNTDIHILPGGDQTEIGERGIN 177
+ Q + + T+R NI +PF ++ L + I P G E+ E G N
Sbjct: 1315 IPQSPVLFSGTVRFNI---DPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371
Query: 178 LSGGQKQRVALARALYSNS 196
S GQ+Q ++LARAL S
Sbjct: 1372 FSVGQRQLLSLARALLRRS 1390
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 119 bits (301), Expect = 3e-32
Identities = 54/156 (34%), Positives = 87/156 (55%)
Query: 41 RKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYA 100
+ K ++ S+ + + + L +IN KG+++ I G+ GSGK++LL
Sbjct: 23 KAKQENNDRKHSSDDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLML 82
Query: 101 ILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDI 160
IL +L + GK+ G ++ SQ +WI T++ NI+FG ++ RY + C L DI
Sbjct: 83 ILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDI 142
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196
P D T +GE GI LSGGQ+ R++LARA+Y ++
Sbjct: 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDA 178
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 120 bits (301), Expect = 2e-30
Identities = 54/150 (36%), Positives = 90/150 (60%)
Query: 47 KSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR 106
K++++ NG++ + L +I+F KG+L+ + G+ GSGKS+LL I+ +L
Sbjct: 418 KARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE 477
Query: 107 STAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGG 166
+ GK+ G ++ Q +WI T++ NI+FG ++ RY + C L DI + P
Sbjct: 478 PSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEK 537
Query: 167 DQTEIGERGINLSGGQKQRVALARALYSNS 196
D+T +GE GI LSGGQ+ R++LARA+Y ++
Sbjct: 538 DKTVLGEGGITLSGGQRARISLARAVYKDA 567
Score = 54.1 bits (130), Expect = 3e-08
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC--------- 118
L D++F G+ VG+ G GSGKS LL A+L +L ST G++ +G
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGVSWNSVTLQTW 1290
Query: 119 ----AYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
+ Q+ +I + T R N+ E + + +K L + I P + +
Sbjct: 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350
Query: 175 GINLSGGQKQRVALARALYSNS 196
G LS G KQ + LAR++ S +
Sbjct: 1351 GYVLSNGHKQLMCLARSILSKA 1372
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 107 bits (269), Expect = 3e-26
Identities = 55/176 (31%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 39 SKRKKYAAKSKEKSNGEESTHLKAEDV-----ERNIALVDINFFAPKGKLVGICGAVGSG 93
S + K + E + E++ + AL D+N G+L + GA G+G
Sbjct: 300 SPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAG 359
Query: 94 KSALLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHNILFGE 140
KS LL +L L T G++ G ++VSQ ++ T+R NIL
Sbjct: 360 KSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLAR 419
Query: 141 PF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
P + L L + P G T IGE G LSGGQ QR+ALARAL S
Sbjct: 420 PDASDEEIIAALDQAGLL-EFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 103 bits (260), Expect = 3e-25
Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 20/147 (13%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-------------S 113
R AL ++F P G+ V + G G+GKS LL +L + T G + S
Sbjct: 334 RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393
Query: 114 REGTCAYVSQEAWITNDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQT 169
A+V Q ++ T+ NI P E + L L+ + LP G T
Sbjct: 394 WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRE---ALERAGLDEFVAALPQGLDT 450
Query: 170 EIGERGINLSGGQKQRVALARALYSNS 196
IGE G LSGGQ QR+ALARA ++
Sbjct: 451 PIGEGGAGLSGGQAQRLALARAFLRDA 477
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 97.9 bits (244), Expect = 5e-23
Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 14/137 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-------------SREG 116
AL ++NF G+++GICG GSGKS LL I + G + S
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389
Query: 117 TCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCA-LNTDIHILPGGDQTEIGERG 175
A VSQ ++ +DT+ +NI G P Q+ + + A ++ DI LP G TE+GERG
Sbjct: 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERG 449
Query: 176 INLSGGQKQRVALARAL 192
+ LSGGQKQR+++ARAL
Sbjct: 450 VMLSGGQKQRISIARAL 466
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 98.1 bits (245), Expect = 5e-23
Identities = 50/147 (34%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------- 117
+ L D++ P G+ V I G GSGKS LL +L + G++ +G
Sbjct: 484 DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLA 543
Query: 118 -----CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIH--I--LPGGDQ 168
YV Q+ ++ + ++R NI G P + + A H I LP G
Sbjct: 544 SLRRQVGYVLQDPFLFSGSIRENIALGNPEATD---EEIIEAAQLAGAHEFIENLPMGYD 600
Query: 169 TEIGERGINLSGGQKQRVALARALYSN 195
T +GE G NLSGGQ+QR+ALARAL S
Sbjct: 601 TPVGEGGANLSGGQRQRLALARALLSK 627
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 93.8 bits (234), Expect = 6e-23
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
L DI+ P G+ V + G GSGKS L+ I +G++ +G
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76
Query: 118 -CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD-IHILPGGDQTEIGERG 175
VSQ+ ++ NDT+ NI +G P + + A + I LP G T IGERG
Sbjct: 77 QIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERG 136
Query: 176 INLSGGQKQRVALARALYSN 195
+ LSGGQ+QR+A+ARAL +
Sbjct: 137 VKLSGGQRQRIAIARALLKD 156
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 92.9 bits (231), Expect = 3e-21
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
L DI+F G+ V I G GSGKS L+ +L T+G++ +G
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403
Query: 118 -CAYVSQEAWITNDTLRHNILFGEPFEPQRY-YKTLYNCALNTDIHILPGGDQTEIGERG 175
VSQ+ + + T+R NI G P + L + I LP G T +GERG
Sbjct: 404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERG 463
Query: 176 INLSGGQKQRVALARALYSNS 196
+NLSGGQ+QR+A+ARAL N
Sbjct: 464 VNLSGGQRQRLAIARALLRNP 484
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 88.8 bits (221), Expect = 3e-21
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
AL +++ G+ V I G VGSGKS LL + + T+G + +GT
Sbjct: 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78
Query: 118 -CAYVSQEAWITNDTLRHNILFGEPF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERG 175
YV Q+ + TLR NI G P + +R + + ++ P G +IGERG
Sbjct: 79 NIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERG 138
Query: 176 INLSGGQKQRVALARALYSN 195
LSGGQ+Q VALARAL ++
Sbjct: 139 RGLSGGQRQAVALARALLND 158
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 87.6 bits (218), Expect = 2e-19
Identities = 47/140 (33%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
AL +++ G+ V I G +GSGKS LL +L + T G + +G
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539
Query: 118 -CAYVSQEAWITNDTLRHNILFGEPF-EPQRYYKTLYNCALNTDIHILPGGDQTEIGERG 175
YV Q+ + TLR NI G P+ + + + + + P G +IGERG
Sbjct: 540 NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599
Query: 176 INLSGGQKQRVALARALYSN 195
+LSGGQ+Q VALARAL +
Sbjct: 600 RSLSGGQRQAVALARALLRD 619
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 84.2 bits (209), Expect = 2e-19
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 20/144 (13%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------- 117
E+ L DINF G+ V I G G+GK+ L+ ++ G++ +G
Sbjct: 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK 73
Query: 118 -----CAYVSQEAWITNDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQ 168
V Q+ ++ + T+ NI G P E K + I LP G
Sbjct: 74 SLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEA---GAHDFIMKLPNGYD 130
Query: 169 TEIGERGINLSGGQKQRVALARAL 192
T +GE G NLS G++Q +A+ARA+
Sbjct: 131 TVLGENGGNLSQGERQLLAIARAM 154
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 82.0 bits (204), Expect = 4e-19
Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 54/140 (38%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
L D++ G+ V I G GSGKS LL +L T+G++ +G
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76
Query: 118 -CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI 176
AYV Q+ ++ + T+R NI
Sbjct: 77 NIAYVPQDPFLFSGTIRENI---------------------------------------- 96
Query: 177 NLSGGQKQRVALARALYSNS 196
LSGGQ+QR+A+ARAL +
Sbjct: 97 -LSGGQRQRIAIARALLRDP 115
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 86.2 bits (214), Expect = 5e-19
Identities = 56/182 (30%), Positives = 79/182 (43%), Gaps = 34/182 (18%)
Query: 59 HLKAEDV------ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112
HL E+V + L I+F G+ + I G GSGKS L I+ T+G +
Sbjct: 316 HLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375
Query: 113 SREG-------------TCAYVSQEAWITNDTLRHNIL-FGEPFEPQRYYKTLYNCALNT 158
+G Y+ Q+ + T+ NI FGE +P++ + A
Sbjct: 376 RLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEK----IIEAAKLA 431
Query: 159 DIH----ILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214
+H LP G T IG G LSGGQ+QR+ALARALY + +VL P +L
Sbjct: 432 GVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK------LVVLDEPNSNL 485
Query: 215 QS 216
Sbjct: 486 DE 487
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 82.3 bits (204), Expect = 9e-19
Identities = 50/144 (34%), Positives = 71/144 (49%), Gaps = 24/144 (16%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------T 117
L D++F P GK V I G GSGKS +L + ++G + +G
Sbjct: 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76
Query: 118 CAYVSQEAWITNDTLRHNILFGEP--FEPQRYYKTLYNCALNTDIH--I--LPGGDQTEI 171
V Q+ + NDT+ +NI +G P + + + A IH I P G T +
Sbjct: 77 IGVVPQDTVLFNDTIGYNIRYGRPDATDEE-----VIEAAKAAQIHDKIMRFPDGYDTIV 131
Query: 172 GERGINLSGGQKQRVALARALYSN 195
GERG+ LSGG+KQRVA+ARA+ N
Sbjct: 132 GERGLKLSGGEKQRVAIARAILKN 155
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 82.5 bits (204), Expect = 1e-17
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
AL I+ G+ V + G GSGKS L+ I +G++ +G
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 118 -CAYVSQEAWITNDTLRHNILFGEPFE--PQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
A VSQ+ + NDT+ +NI +G + + L + LP G T IGE
Sbjct: 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466
Query: 175 GINLSGGQKQRVALARALYSNS 196
G+ LSGGQ+QR+A+ARAL ++
Sbjct: 467 GVLLSGGQRQRLAIARALLKDA 488
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 81.6 bits (202), Expect = 2e-17
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------- 117
L I+F G+ +GI G GSGKS L ++ T+G + +G
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH 411
Query: 118 CAYVSQEAWITNDTLRHNIL-FGEPFEPQRYYKTLYNCALNTDIH--I--LPGGDQTEIG 172
Y+ Q+ + + T+ NI FGE +P++ + A +H I LP G T IG
Sbjct: 412 IGYLPQDVELFDGTIAENIARFGEEADPEKVIEA----ARLAGVHELILRLPQGYDTRIG 467
Query: 173 ERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207
E G LSGGQ+QR+ALARALY + F +VL
Sbjct: 468 EGGATLSGGQRQRIALARALYGDPF------LVVL 496
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 81.3 bits (201), Expect = 2e-17
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------- 116
L ++ P G+ V I G GSGKS LL + L G+++ +G
Sbjct: 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEV 407
Query: 117 --TCAYVSQEAWITNDTLRHNILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGE 173
+ +Q+A + + T+R N+ P + + L L + LP G T +GE
Sbjct: 408 RRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGE 467
Query: 174 RGINLSGGQKQRVALARAL 192
G LSGG++QR+ALARAL
Sbjct: 468 GGARLSGGERQRLALARAL 486
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 78.3 bits (194), Expect = 3e-17
Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 33/150 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAI----------------------LSQLRS 107
L +I+F G+ VGI G GSGKS+LL A+ L LRS
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78
Query: 108 TAGKLSREGTCAYVSQEAWITNDTLRHNI-LFGEPFEPQRYYKTLYNCALNTDIHILPGG 166
++S + Q+ + + T+R N+ FGE + + ++ L L + LPGG
Sbjct: 79 ---RIS------IIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGG 128
Query: 167 DQTEIGERGINLSGGQKQRVALARALYSNS 196
T + E G NLS GQ+Q + LARAL S
Sbjct: 129 LDTVVEEGGENLSVGQRQLLCLARALLRKS 158
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 78.0 bits (193), Expect = 4e-17
Identities = 52/151 (34%), Positives = 68/151 (45%), Gaps = 38/151 (25%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKS---ALL---YAI----------------LSQL 105
L ++ P GK V + G+ G GKS +LL Y L L
Sbjct: 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWL 75
Query: 106 RSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIH--I- 162
RS G VSQE + + T+ NI +G+P + + A +IH I
Sbjct: 76 RSQIG---------LVSQEPVLFDGTIAENIRYGKPDATD---EEVEEAAKKANIHDFIM 123
Query: 163 -LPGGDQTEIGERGINLSGGQKQRVALARAL 192
LP G T +GERG LSGGQKQR+A+ARAL
Sbjct: 124 SLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 75.6 bits (186), Expect = 3e-16
Identities = 47/140 (33%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------- 116
L +I+ G++VGI G GSGKS L I G++ +G
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76
Query: 117 TCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD-IHILPGGDQTEIGERG 175
V QE + N ++R NI +P A D I LP G T +GE+G
Sbjct: 77 QVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQG 136
Query: 176 INLSGGQKQRVALARALYSN 195
LSGGQ+QR+A+ARAL N
Sbjct: 137 AGLSGGQRQRIAIARALIHN 156
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 77.0 bits (190), Expect = 5e-16
Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 15/146 (10%)
Query: 64 DVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS------REGT 117
D R I L I+F P GK V I G G+GKS +L + +G ++ R+ T
Sbjct: 273 DPRRPI-LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT 331
Query: 118 CAY-------VSQEAWITNDTLRHNILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQT 169
V Q+ + NDT+ +NI +G P + ++ I LP G T
Sbjct: 332 QQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDT 391
Query: 170 EIGERGINLSGGQKQRVALARALYSN 195
+GERG+ LSGG+KQRVA+AR + N
Sbjct: 392 GVGERGLKLSGGEKQRVAIARTILKN 417
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 75.7 bits (187), Expect = 2e-15
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 21/155 (13%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILS-------------QLRSTAGKLSREGTCAY 120
+NF P G+ + + G G+GK++LL A+L +LR + R+ ++
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRK-HLSW 427
Query: 121 VSQEAWITNDTLRHNILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLS 179
V Q + + TLR N+L G P ++ + L N ++ + +LP G T IG++ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 180 GGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214
GQ QR+ALARAL L+L P SL
Sbjct: 488 VGQAQRLALARALLQPC------QLLLLDEPTASL 516
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 74.7 bits (184), Expect = 4e-15
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------- 116
AL + N +G+ V I G GSGKS LL + G ++ G
Sbjct: 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412
Query: 117 TCAYVSQEAWITNDTLRHNILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERG 175
T + ++Q + + TLR N+ P + + L L + P G T +GE G
Sbjct: 413 TISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGG 472
Query: 176 INLSGGQKQRVALARALYSN 195
LSGG+++R+ALARAL +
Sbjct: 473 RRLSGGERRRLALARALLHD 492
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 73.5 bits (181), Expect = 9e-15
Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 35/152 (23%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSAL------LYAI----------------LSQLRS 107
AL +INF P GK V + G GSGKS + Y I L+ LR+
Sbjct: 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRN 417
Query: 108 TAGKLSREGTCAYVSQEAWITNDTLRHNILF--GEPFEPQRYYKTLYNCALNTD-IHILP 164
A VSQ + NDT+ +NI + E + ++ + A D I+ +
Sbjct: 418 Q---------VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAAR-MAYAMDFINKMD 467
Query: 165 GGDQTEIGERGINLSGGQKQRVALARALYSNS 196
G T IGE G+ LSGGQ+QR+A+ARAL +S
Sbjct: 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 72.4 bits (178), Expect = 2e-14
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
AL +N G+ V + G G+GKS L +L +G++ +G
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 118 -CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD-IHILPGGDQTEIGERG 175
A V Q+ + ++ NI +G P + A + I LP G T +GERG
Sbjct: 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERG 474
Query: 176 INLSGGQKQRVALARAL 192
+ LSGGQ+QR+A+ARA+
Sbjct: 475 VTLSGGQRQRIAIARAI 491
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 70.9 bits (174), Expect = 8e-14
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 24/175 (13%)
Query: 42 KKYAAKSKEKSNGEESTHLKAEDVERNI-----ALVDINFFAPKGKLVGICGAVGSGKSA 96
K NG+ + DV + L DI+ I G GSGKS
Sbjct: 460 NKKKRTELNNLNGD----IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKST 515
Query: 97 LLYAILSQLRSTAGKLSREGT-------------CAYVSQEAWITNDTLRHNILFG--EP 141
L ++ ++ +G++ G Y+ QE +I + ++ N+L G E
Sbjct: 516 LAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKEN 575
Query: 142 FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196
+ + DI +P G QTE+ E G ++SGGQKQR+ALARAL ++S
Sbjct: 576 VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 70.5 bits (173), Expect = 1e-13
Identities = 52/146 (35%), Positives = 68/146 (46%), Gaps = 28/146 (19%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSAL------LYAI-----------LSQLRSTAGKLS 113
L ++N G+ +GI G GSGKS L LY L+ L
Sbjct: 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW--LR 530
Query: 114 REGTCAYVSQEAWITNDTLRHNILFGEP---FEPQRYYKTLYNCALNTD-IHILPGGDQT 169
R+ V QE + + ++R NI P FE + L A D I LP G T
Sbjct: 531 RQ--MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKL---AGAHDFISELPQGYNT 585
Query: 170 EIGERGINLSGGQKQRVALARALYSN 195
E+GE+G NLSGGQ+QR+A+ARAL N
Sbjct: 586 EVGEKGANLSGGQRQRIAIARALVGN 611
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 66.5 bits (163), Expect = 1e-13
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 41/129 (31%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127
AL +++ G++V + G GSGKS LL AI L+ T+G++ +G A +
Sbjct: 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK-----DIAKL 66
Query: 128 TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVA 187
+ LR I + PQ LSGGQ+QRVA
Sbjct: 67 PLEELRRRIG----YVPQ--------------------------------LSGGQRQRVA 90
Query: 188 LARALYSNS 196
LARAL N
Sbjct: 91 LARALLLNP 99
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 66.7 bits (163), Expect = 4e-13
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC------------ 118
L D++F G++ + G GSGKS ++ + + + G++ +G
Sbjct: 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89
Query: 119 -AYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCA-LNTDIHILPGGDQTEIGERGI 176
+ V QE + +L+ NI +G K A ++ I L G TE+GE+G
Sbjct: 90 VSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGS 149
Query: 177 NLSGGQKQRVALARALYSN 195
LSGGQKQRVA+ARAL N
Sbjct: 150 QLSGGQKQRVAIARALIRN 168
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 68.4 bits (168), Expect = 5e-13
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------- 116
+ L D++ G+ V I G GSGKS LL +L +G + +G
Sbjct: 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAV 525
Query: 117 --TCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
V Q + + ++ NI G P ++ L DI +P G T I E
Sbjct: 526 RRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585
Query: 175 GINLSGGQKQRVALARAL 192
G LSGGQ+QR+ +ARAL
Sbjct: 586 GGTLSGGQRQRLLIARAL 603
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 66.0 bits (162), Expect = 6e-13
Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 47/153 (30%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------- 117
AL DI+ +G+ V + G G GKS LL I R T+G++ +G
Sbjct: 15 GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPD 74
Query: 118 CAYVSQEA----WITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGE 173
YV Q+ W+ T+ N+ G ++ +P + E E
Sbjct: 75 RGYVFQQDALLPWL---TVLDNVALGL------------------ELQGVPKAEARERAE 113
Query: 174 RGIN--------------LSGGQKQRVALARAL 192
+ LSGG +QRVALARAL
Sbjct: 114 ELLELVGLSGFENAYPHQLSGGMRQRVALARAL 146
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 67.8 bits (166), Expect = 9e-13
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------- 117
L + F G++V + G GSGKS + + + + T G++ +G
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556
Query: 118 CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD-IHILPGGDQTEIGERGI 176
A V QE + + ++R NI +G P A D I P G TE+GE+G
Sbjct: 557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS 616
Query: 177 NLSGGQKQRVALARALYSN 195
LSGGQKQR+A+ARAL
Sbjct: 617 QLSGGQKQRIAIARALVRK 635
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 66.0 bits (162), Expect = 1e-12
Identities = 43/163 (26%), Positives = 61/163 (37%), Gaps = 51/163 (31%)
Query: 60 LKAEDVER----NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L+ E V + L DIN KG+ V I G G GKS LL I + T+G++ +
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63
Query: 116 GT--------CAYVSQEA----WITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHIL 163
G YV QE W+ T+ N+ G ++
Sbjct: 64 GRPVTGPGPDIGYVFQEDALLPWL---TVLDNVALG------------------LELRGK 102
Query: 164 PGGDQTEIGERGIN--------------LSGGQKQRVALARAL 192
+ E + + LSGG +QRVA+ARAL
Sbjct: 103 SKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARAL 145
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 64.8 bits (158), Expect = 2e-12
Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 18/136 (13%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA---------- 119
AL D+N P G LV + G GSGKS LL I + +G++ G A
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKI 74
Query: 120 -YVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN 177
+V Q A + T+R NI FG E +++ K + + ++ +G+R N
Sbjct: 75 GFVFQHYALFKHLTVRDNIAFG--LEIRKHPKAKIKARVEELLELV---QLEGLGDRYPN 129
Query: 178 -LSGGQKQRVALARAL 192
LSGGQ+QRVALARAL
Sbjct: 130 QLSGGQRQRVALARAL 145
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 66.3 bits (162), Expect = 3e-12
Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALL-----YAILSQ---------LRSTAGKLS 113
N+ L +IN P V + G GSGKS L Y L++ L S + +
Sbjct: 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413
Query: 114 REGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGE 173
R+G A V Q+ + DT N+ G ++ ++ L L LP G T +GE
Sbjct: 414 RQGV-AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGE 472
Query: 174 RGINLSGGQKQRVALARAL 192
+G NLS GQKQ +ALAR L
Sbjct: 473 QGNNLSVGQKQLLALARVL 491
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 64.5 bits (158), Expect = 3e-12
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 33/154 (21%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKLS----------- 113
E+ AL D+N G+ V I G GSGKS LL +L L T+G++
Sbjct: 16 EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLSE 74
Query: 114 ------REGTCAYVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGG 166
R +V Q + + T+ N+ P +L
Sbjct: 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVEL-----PLLIAGKSAGRRKRAAEELL--- 126
Query: 167 DQTEIGERGIN-----LSGGQKQRVALARALYSN 195
+ + +R + LSGGQ+QRVA+ARAL +N
Sbjct: 127 EVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 64.5 bits (158), Expect = 3e-12
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 30/161 (18%)
Query: 60 LKAEDVE----RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L+ E++ L D++F PKG++ GI G GSGKS LL + L+ +G++ +
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62
Query: 116 G-------------TCAYVSQEAWITND-TLRHNILFGEPFEPQRY-YKTLYNCALNTDI 160
G AYV Q T+ +L G RY + L+ D
Sbjct: 63 GKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLG------RYPHLGLFGRPSKEDE 116
Query: 161 -HILPGGDQTEIG---ERGIN-LSGGQKQRVALARALYSNS 196
+ + + +R ++ LSGG++QRV +ARAL +
Sbjct: 117 EIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQET 157
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 63.5 bits (155), Expect = 5e-12
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC-----------------AYVS 122
++ GI GA G+GKS LL I + G + GT V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 123 QE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI-NLSG 180
Q+ A + +R N+ FG + R + + +L + R LSG
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVD-------ELLDLLGLDHLLNRYPAQLSG 134
Query: 181 GQKQRVALARALYSN 195
G+KQRVALARAL +
Sbjct: 135 GEKQRVALARALAAQ 149
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 62.2 bits (152), Expect = 7e-12
Identities = 36/138 (26%), Positives = 53/138 (38%), Gaps = 54/138 (39%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------- 117
L +++F G+ + I G GSGKS L IL LR T+G++ +G
Sbjct: 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH 77
Query: 118 CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN 177
Y+ Q+ + + ++ NI
Sbjct: 78 VGYLPQDDELFSGSIAENI----------------------------------------- 96
Query: 178 LSGGQKQRVALARALYSN 195
LSGGQ+QR+ LARALY N
Sbjct: 97 LSGGQRQRLGLARALYGN 114
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 64.6 bits (158), Expect = 8e-12
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKLSREGT----------- 117
+ D++F A G+ V I G G+GKS L+ +L ++ +G++ +GT
Sbjct: 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQRVFDPQSGRILIDGTDIRTVTRASLR 408
Query: 118 --CAYVSQEAWITNDTLRHNILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
A V Q+A + N ++ NI G P + + I P G T +GER
Sbjct: 409 RNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGER 468
Query: 175 GINLSGGQKQRVALARALYSNS 196
G LSGG++QR+A+ARAL +
Sbjct: 469 GRQLSGGERQRLAIARALLKDP 490
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 62.3 bits (152), Expect = 2e-11
Identities = 42/168 (25%), Positives = 64/168 (38%), Gaps = 47/168 (27%)
Query: 57 STHLKAEDV-----ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK 111
++AE++ R AL D++ KG+ V + G GSGKS LL + L+ T+G+
Sbjct: 1 LRMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 112 LSREG--------------TCAYVSQ--EAWITNDTLRHNILFGEPFEP-------QRYY 148
+ +G V Q + + T+ + FG +R
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA 120
Query: 149 KTLYNCAL----NTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL 192
+ L L + NLSGGQKQRVA+A L
Sbjct: 121 EALELVGLEELLDRPPF---------------NLSGGQKQRVAIAGVL 153
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 61.8 bits (151), Expect = 2e-11
Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 35/152 (23%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC-------- 118
+ L D++F G+ + I G G+GKS LL AIL L+ T+G + G
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70
Query: 119 AYVSQEAWITNDTLRHNILFGEP---FE-----------PQRYYKTLYNCALNTDIHILP 164
YV Q R +I P + R ++ L
Sbjct: 71 GYVPQ---------RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD---EALE 118
Query: 165 GGDQTEIGERGI-NLSGGQKQRVALARALYSN 195
+E+ +R I LSGGQ+QRV LARAL +
Sbjct: 119 RVGLSELADRQIGELSGGQQQRVLLARALVQD 150
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 62.3 bits (152), Expect = 2e-11
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 37/159 (23%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------- 117
+ AL D+N +G++V I G G+GKS LL ++ + T+G++ G
Sbjct: 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKE 75
Query: 118 -------CAYVSQE-AWITNDTLRHNILFGEP------------FEPQRYYKTLYNCALN 157
+ Q+ + ++ N+L G F + + L AL
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD--ALE 133
Query: 158 TDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196
+ IL Q R LSGGQ+QRVA+ARAL
Sbjct: 134 R-VGILDKAYQ-----RASTLSGGQQQRVAIARALVQQP 166
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 62.6 bits (152), Expect = 4e-11
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CA 119
D++F A G+ V I G G+GK+ L+ + T G++ +G A
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412
Query: 120 YVSQEAWITNDTLRHNILFG-EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINL 178
V Q+A + N ++R NI G E + Y+ A + I G T +GERG L
Sbjct: 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472
Query: 179 SGGQKQRVALARALYSNS 196
SGG++QR+A+ARA+ N+
Sbjct: 473 SGGERQRLAIARAILKNA 490
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 58.1 bits (141), Expect = 7e-11
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 27/119 (22%)
Query: 95 SALLYAILSQLRSTAGKLSREGTC--------------AYVSQEAWITND-TLRHNILFG 139
S LL I L+ T+G + +G V Q+ + + T+R N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 140 EPFEPQ--RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196
+ R + L L + P G LSGGQKQRVA+ARAL
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKP 109
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 59.8 bits (146), Expect = 8e-11
Identities = 45/155 (29%), Positives = 58/155 (37%), Gaps = 53/155 (34%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
AL DI+ KG+ V I G GSGKS LL + L T+G++ +G
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75
Query: 118 -CAYVSQ--EAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
V Q + T+ + FG L N G + EI ER
Sbjct: 76 KVGLVFQNPDDQFFGPTVEEEVAFG-----------LENL----------GLPEEEIEER 114
Query: 175 --------GI---------NLSGGQKQRVALARAL 192
G+ LSGGQKQRVA+A L
Sbjct: 115 VEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVL 149
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 60.3 bits (147), Expect = 1e-10
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 31/148 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC----------A 119
L DI+ KG++ + G G+GKS LL AIL L+ ++G++ G
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIG 78
Query: 120 YVSQEAWITND---TLRHNILFGEPFEPQRYYKTLYNCALNTDIH-----ILPGGDQTEI 171
YV Q++ + T++ +L G RY K + LN L ++ +
Sbjct: 79 YVPQKSSVDRSFPITVKDVVLLG------RYGKKGWFRRLNKKDKEKVDEAL---ERVGM 129
Query: 172 GE---RGI-NLSGGQKQRVALARALYSN 195
+ R I LSGGQKQRV LARAL N
Sbjct: 130 EDLRDRQIGELSGGQKQRVLLARALAQN 157
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 57.8 bits (141), Expect = 2e-10
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 54/135 (40%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------------CA 119
D++ G++VGI G G+GKS LL + L+ ++G++ +G A
Sbjct: 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIA 76
Query: 120 YVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALN-TDIHILPGGDQTEIGERGIN- 177
YV Q AL + + +R N
Sbjct: 77 YVPQ-------------------------------ALELLGL--------AHLADRPFNE 97
Query: 178 LSGGQKQRVALARAL 192
LSGG++QRV LARAL
Sbjct: 98 LSGGERQRVLLARAL 112
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 58.7 bits (143), Expect = 3e-10
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 32/150 (21%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------- 117
E+ AL ++ KG+ V I G GSGKS LL + R T+G++ +GT
Sbjct: 15 EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEK 74
Query: 118 ---------CAYVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGD 167
+V Q + + T N+ P +L +
Sbjct: 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVEL-----PLLLAGVPKKERRERAEELL---E 126
Query: 168 QTEIGERGIN-----LSGGQKQRVALARAL 192
+ +G+R +N LSGGQ+QRVA+ARAL
Sbjct: 127 RVGLGDR-LNHYPSELSGGQQQRVAIARAL 155
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 58.7 bits (143), Expect = 3e-10
Identities = 50/149 (33%), Positives = 70/149 (46%), Gaps = 31/149 (20%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
AL D++ PKG++ GI G G+GKS L+ I R T+G + +GT + +
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78
Query: 129 NDTLRHNILFGEPFEPQRY----YKTLY-NCALNTDIHILPGGDQTEIGER--------G 175
R I G F Q + +T++ N AL +I G + EI ER G
Sbjct: 79 K--ARRRI--GMIF--QHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVG 129
Query: 176 I---------NLSGGQKQRVALARALYSN 195
+ LSGGQKQRV +ARAL +N
Sbjct: 130 LEDKADAYPAQLSGGQKQRVGIARALANN 158
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 59.0 bits (144), Expect = 4e-10
Identities = 53/173 (30%), Positives = 71/173 (41%), Gaps = 59/173 (34%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG----------KLSREGTC 118
AL +++ P G++ G+ GA G+GKS L+ I R T+G LS +
Sbjct: 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78
Query: 119 AYVSQEAWITNDTLRHNILFGEPFEPQRYY----KTLY-NCALNTDIHILPGGDQTEIGE 173
R I G F Q + +T++ N AL + L G + EI
Sbjct: 79 K------------ARRQI--GMIF--QHFNLLSSRTVFDNVALPLE---LAGTPKAEIKA 119
Query: 174 R--------GI---------NLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209
R G+ LSGGQKQRVA+ARAL SN VLLC
Sbjct: 120 RVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP--------KVLLC 164
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 58.8 bits (143), Expect = 8e-10
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 28/151 (18%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC--AYVSQE-AWITN 129
+++ G+ +G+ G G+GKS LL + +L +G+++R Y+SQE
Sbjct: 21 NVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPE 80
Query: 130 DTLRHNIL--FGEPFEPQRYYKTLYNCALNTDIHILP---------GGDQTEIGERGI-- 176
T+ ++ FGE E + Y + D +L G E
Sbjct: 81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL 140
Query: 177 ------------NLSGGQKQRVALARALYSN 195
+LSGG ++RVALARAL
Sbjct: 141 GLGFPDEDRPVSSLSGGWRRRVALARALLEE 171
Score = 49.2 bits (118), Expect = 9e-07
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 19/139 (13%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS-REGT-CAYVSQE--AWIT 128
D++F +G + I G G+GKS LL + +L +G + E Y Q
Sbjct: 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDP 399
Query: 129 NDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVAL 188
+ T+ + G P ++ + G DQ + LSGG+K R+ L
Sbjct: 400 DKTVLEELSEGFPDGDEQEVRAYLGRFG------FTGEDQEKPVG---VLSGGEKARLLL 450
Query: 189 ARALYSNSFEQQTFHFLVL 207
A+ L + L+L
Sbjct: 451 AKLLLQPP------NLLLL 463
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 58.0 bits (140), Expect = 9e-10
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 39/181 (21%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL +++ P G++ G+ GA G+GKS L+ + R T+G + +G + +T
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER--------GI----- 176
+ ++F + F N AL + L + EI + G+
Sbjct: 80 ARRQIGMIF-QHFNLLSSRTVFGNVALPLE---LDNTPKDEIKRKVTELLALVGLGDKHD 135
Query: 177 ----NLSGGQKQRVALARALYSNSFEQQTFHFLVLLC--------PCVSLQSIL-LMEEV 223
NLSGGQKQRVA+ARAL SN VLLC P + QSIL L++E+
Sbjct: 136 SYPSNLSGGQKQRVAIARALASNP--------KVLLCDEATSALDPATT-QSILELLKEI 186
Query: 224 N 224
N
Sbjct: 187 N 187
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 56.8 bits (138), Expect = 1e-09
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 27/143 (18%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L I+ KG++V I G GSGKS LL I +G + +G ++
Sbjct: 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI--- 71
Query: 130 DTLRHNILFGEPFEPQRY----YKT-LYNCALN-TDIHILPGGDQTEIGER-----GI-- 176
+ LR + G F Q++ + T L N L + + + E G+
Sbjct: 72 NELRQKV--GMVF--QQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD 127
Query: 177 -------NLSGGQKQRVALARAL 192
LSGGQ+QRVA+ARAL
Sbjct: 128 KADAYPAQLSGGQQQRVAIARAL 150
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 58.4 bits (142), Expect = 1e-09
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 33/165 (20%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK----------LSRE---GTCA 119
+ + G+ V + G GSGKS + + + +G+ + RE + A
Sbjct: 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556
Query: 120 YVSQEAWITNDTLRHNILFGEPFEPQ-RYYKTLYNCALNTDIHILPGGDQTEIGERGINL 178
V Q+ ++ T+R N+ +P P + + A++ I PGG E+ E G NL
Sbjct: 557 MVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANL 616
Query: 179 SGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEEV 223
SGGQ+QR+ +ARAL N P SIL+++E
Sbjct: 617 SGGQRQRLEIARALVRN--------------P-----SILILDEA 642
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 57.0 bits (138), Expect = 2e-09
Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL--------------SRE 115
AL DI+ G+LV + G G+GKS LL I AG++ R+
Sbjct: 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76
Query: 116 GTCAYVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTE-IGE 173
+V Q A + T+ NI FG +R + + + L Q E + +
Sbjct: 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEA----EIRARVEELLRLVQLEGLAD 132
Query: 174 RGIN-LSGGQKQRVALARAL 192
R LSGGQ+QRVALARAL
Sbjct: 133 RYPAQLSGGQRQRVALARAL 152
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 56.0 bits (136), Expect = 2e-09
Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 45/160 (28%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
AL D++ G+ V + G G+GKS LL + + T+G + +GT
Sbjct: 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75
Query: 118 ----CAYVSQE-AWITNDTLRHNILFG------------EPFEPQRYYKTLYNCALNTDI 160
+ Q+ I ++ N+L G F + + L AL
Sbjct: 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALA--AL---- 129
Query: 161 HILPGGDQTEIGE----RGINLSGGQKQRVALARALYSNS 196
++ + + R LSGGQ+QRVA+ARAL
Sbjct: 130 ------ERVGLLDKAYQRADQLSGGQQQRVAIARALMQQP 163
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 56.0 bits (136), Expect = 2e-09
Identities = 46/146 (31%), Positives = 64/146 (43%), Gaps = 28/146 (19%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL D++F KG+ +G+ G GSGKS L AIL L+ T+G + +G
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL--R 77
Query: 130 DTLRHNI--LFGEPF--------------EPQRYYKTLYNCALNTDIHILPGGDQTEIG- 172
R I +F +P EP R + L + +L +G
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLL---LLVGVGL 134
Query: 173 -ERGIN-----LSGGQKQRVALARAL 192
E +N LSGGQ+QRVA+ARAL
Sbjct: 135 PEEVLNRYPHELSGGQRQRVAIARAL 160
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 55.6 bits (135), Expect = 4e-09
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 40/149 (26%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITND 130
L ++ +G+++ I G GSGKS LL I+ LR +G++ +G EA +
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 131 TLRHNILFGEPFEPQRYYKTLYNCALNTDIHI-----LP-----GGDQTEIGER------ 174
R +LF Q + AL + + P + EI E
Sbjct: 76 RRRMGMLF------Q-------SGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLE 122
Query: 175 --GI---------NLSGGQKQRVALARAL 192
G+ LSGG K+RVALARAL
Sbjct: 123 AVGLRGAEDLYPAELSGGMKKRVALARAL 151
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 56.1 bits (136), Expect = 4e-09
Identities = 49/153 (32%), Positives = 68/153 (44%), Gaps = 39/153 (25%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
AL D++ PKG++ GI G G+GKS LL I R T+G + +G EA +
Sbjct: 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79
Query: 129 NDTLRHNI--------LFGEPFEPQRYYKTLY-NCALNTDIHILPGGDQTEIGER----- 174
LR I L +T++ N A ++ G + EI +R
Sbjct: 80 Q--LRQKIGMIFQHFNLLSS--------RTVFENVAFPLELA---GVPKAEIKQRVAELL 126
Query: 175 ---GI---------NLSGGQKQRVALARALYSN 195
G+ LSGGQKQRVA+ARAL +N
Sbjct: 127 ELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 55.8 bits (135), Expect = 4e-09
Identities = 42/152 (27%), Positives = 58/152 (38%), Gaps = 37/152 (24%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
AL +IN G+ V I G G+GKS LL I + ++G + EGT
Sbjct: 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76
Query: 118 ----CAYVSQE-AWITNDTLRHNILFGE------------PFEPQRYYKTLYNCALNTDI 160
+ Q I T+ N+L G F + + L +
Sbjct: 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALER---V 133
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARAL 192
+ Q R LSGGQ+QRVA+ARAL
Sbjct: 134 GLADKAYQ-----RADQLSGGQQQRVAIARAL 160
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 54.5 bits (132), Expect = 4e-09
Identities = 38/156 (24%), Positives = 55/156 (35%), Gaps = 58/156 (37%)
Query: 60 LKAEDVER----NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L+ ++V + L D++ G++V + G GSGKS LL I +G + +
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 116 GT---------------CAYVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD 159
G V Q+ A + T+ NI G
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-------------------- 100
Query: 160 IHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
LSGGQ+QRVALARAL +
Sbjct: 101 ------------------LSGGQQQRVALARALAMD 118
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 55.8 bits (135), Expect = 4e-09
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 27/141 (19%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------T 117
AL ++F G++ G+ G G+GK+ LL + L+ T+G++ G
Sbjct: 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRR 79
Query: 118 CAYVSQEAWITND-TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPG-----GDQTEI 171
YV QE + + T+R N+ ++ LY + + G + +
Sbjct: 80 IGYVPQEPSLYPELTVRENL---------EFFARLYGLSKEEAEERIEELLELFGLEDKA 130
Query: 172 GERGINLSGGQKQRVALARAL 192
++ LSGG KQR+++A AL
Sbjct: 131 NKKVRTLSGGMKQRLSIALAL 151
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 54.8 bits (133), Expect = 4e-09
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------- 117
AL D++ G+ + + G G GK+ LL I R +G++ +G
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 118 -CAYVSQE-AWITNDTLRHNILFG-------EPFEPQRYYKTLYNCALNTDIHILPGGDQ 168
V Q+ A + T+ NI FG + R + L L ++ P
Sbjct: 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE-- 130
Query: 169 TEIGERGINLSGGQKQRVALARAL 192
LSGGQ+QRVALARAL
Sbjct: 131 ---------LSGGQQQRVALARAL 145
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 55.3 bits (134), Expect = 5e-09
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 32/162 (19%)
Query: 57 STHLKAEDVERNI--------ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST 108
T L ++ AL +++ +G+ +GI G GSGKS L + + +
Sbjct: 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60
Query: 109 AGKLSREGTCAYVSQEAWITNDTLRHNI--LFGEP---FEPQRYYKTLYNCALNTDIHIL 163
+G + +G + +F +P P+R + + L H L
Sbjct: 61 SGSILLDG----KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR--PHGL 114
Query: 164 PGGDQ------TEIG------ERGIN-LSGGQKQRVALARAL 192
Q ++G +R + LSGGQ+QR+A+ARAL
Sbjct: 115 SKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL 156
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 54.6 bits (132), Expect = 6e-09
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS----------REGTCAY 120
L D++ G+++ + G G+GK+ L + ++ ++G + R + Y
Sbjct: 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGY 75
Query: 121 VSQEA--WITNDTLRHNILFGEPFEPQRYYKTLYNCALNT-DIHILPGGDQTEIGERG-I 176
V Q+ + D++R +L G + L D++ L ER +
Sbjct: 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQA--ETVLKDLDLYALK--------ERHPL 125
Query: 177 NLSGGQKQRVALARALYSN 195
+LSGGQKQR+A+A AL S
Sbjct: 126 SLSGGQKQRLAIAAALLSG 144
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 53.6 bits (130), Expect = 8e-09
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 35/139 (25%)
Query: 60 LKAEDVE----RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
++ ++ + AL DI+ KG++ G+ G G+GK+ L+ IL L+ +G++
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 116 GTCAYVSQEAWITNDTLRHNI--LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGE 173
G ++ + ++ I L EP Y+ L T
Sbjct: 61 G------KDIKKEPEEVKRRIGYLPEEP----SLYENL------T-------------VR 91
Query: 174 RGINLSGGQKQRVALARAL 192
+ LSGG KQR+ALA+AL
Sbjct: 92 ENLKLSGGMKQRLALAQAL 110
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 54.1 bits (131), Expect = 1e-08
Identities = 39/152 (25%), Positives = 58/152 (38%), Gaps = 43/152 (28%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
L ++ PKG++ + G G GK+ LL ++ L +G + +G
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 118 --CAYVSQEAWITND-TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEI--- 171
AYV Q I T+ N+L G I EI
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTG--LAALPRRSR----------KIPD-----EIYEL 117
Query: 172 --------GERGINLSGGQKQRVALARALYSN 195
G RG +LSGGQ+Q++A+ARAL +
Sbjct: 118 FPVLKEMLGRRGGDLSGGQQQQLAIARALVTR 149
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 54.7 bits (132), Expect = 1e-08
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 34/146 (23%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC-------------- 118
D +F P + I G GSGK+ L+ I R G++ G
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 119 ---AYVSQEAWI-TNDTLRHNILFG----EPFEPQRYYKTLYNCALNTDIHILPGGDQTE 170
YV QEA + + ++R N+ +G P E + ++ + L H+L
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIE-LLGIG-HLL------- 125
Query: 171 IGERGIN-LSGGQKQRVALARALYSN 195
R LSGG+KQRVA+ RAL S+
Sbjct: 126 --GRLPGRLSGGEKQRVAIGRALLSS 149
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 53.6 bits (130), Expect = 2e-08
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 45/166 (27%)
Query: 60 LKAEDVE----RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L+ E++ + AL ++ +G++V + G G+GK+ LL I+ +R +G++ +
Sbjct: 4 LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD 63
Query: 116 GT--------------CAYVSQEAWI-TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDI 160
G AYV + I T+ N+L G + +
Sbjct: 64 GEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE---------- 113
Query: 161 HILPGGDQTEI-----------GERGINLSGGQKQRVALARALYSN 195
D E+ +R LSGG++Q +A+ARAL S
Sbjct: 114 -----RDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 53.9 bits (130), Expect = 2e-08
Identities = 47/136 (34%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CA 119
L DI+ P G++V + G GSGK+ LL I T+G + GT
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 120 YVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGER-GI 176
+V Q A + T+ NI FG P+R A+ + L Q + +R
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAA--AIKAKVTQLLEMVQLAHLADRYPA 135
Query: 177 NLSGGQKQRVALARAL 192
LSGGQKQRVALARAL
Sbjct: 136 QLSGGQKQRVALARAL 151
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 53.1 bits (128), Expect = 3e-08
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 20/139 (14%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-----------SREGTC 118
AL D++ P G+LV + G GSGK+ LL I R +G + +E
Sbjct: 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNV 76
Query: 119 AYVSQE-AWITNDTLRHNILFGEPFEP--QRYYKTLYNCALNTDIHILPGGDQTE-IGER 174
+V Q A + T+ N+ FG +P +R + + +H L Q + + +R
Sbjct: 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEA----EIRAKVHELLKLVQLDWLADR 132
Query: 175 GIN-LSGGQKQRVALARAL 192
LSGGQ+QRVALARAL
Sbjct: 133 YPAQLSGGQRQRVALARAL 151
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 53.0 bits (128), Expect = 4e-08
Identities = 42/158 (26%), Positives = 62/158 (39%), Gaps = 55/158 (34%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG----------KLSREG------ 116
++ P+G+++ I G GSGKS LL IL LR G +LS E
Sbjct: 26 GVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85
Query: 117 TCAYVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEI---- 171
+ Q+ A ++ T+ N+ F P R + L ++ I
Sbjct: 86 RMGVLFQQGALFSSLTVFENVAF-----PLREHTKL---------------PESLIRELV 125
Query: 172 -------GERGIN-------LSGGQKQRVALARALYSN 195
G RG LSGG ++RVALARA+ +
Sbjct: 126 LMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 52.5 bits (126), Expect = 4e-08
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC--------- 118
N L +I+F G+ VG+ G GSGKS LL A L +L +T G + +G
Sbjct: 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPLQKW 75
Query: 119 ----AYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
+ Q+ +I + T R N+ + + +K L + I PG + +
Sbjct: 76 RKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG 135
Query: 175 GINLSGGQKQRVALARALYSNS 196
G LS G KQ + LAR++ S +
Sbjct: 136 GCVLSHGHKQLMCLARSVLSKA 157
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 52.0 bits (125), Expect = 5e-08
Identities = 41/144 (28%), Positives = 60/144 (41%), Gaps = 30/144 (20%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------- 117
L +I+F G+ I G G GKS LL + S + T+G L EG
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 118 ---CAYVSQEAWITNDTLRHNILF-----GEPFEPQRYYKTLYNCALNTDIHILPGGDQT 169
+Y +Q + DT+ N++F + +P + L AL IL
Sbjct: 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFAL--PDTIL------ 131
Query: 170 EIGERGIN-LSGGQKQRVALARAL 192
+ I LSGG+KQR++L R L
Sbjct: 132 ---TKNIAELSGGEKQRISLIRNL 152
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 51.8 bits (124), Expect = 5e-08
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 28/142 (19%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------- 117
L +I+ G+ + I G G GKS LL + S + T+G L EG
Sbjct: 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYR 76
Query: 118 --CAYVSQEAWITNDTLRHNILF-----GEPFEPQRYYKTLYNCALNTDIHILPGGDQTE 170
+Y +Q + DT+ N++F + L AL +
Sbjct: 77 QQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSI 126
Query: 171 IGERGINLSGGQKQRVALARAL 192
+ + LSGG+KQR+AL R L
Sbjct: 127 LTKNITELSGGEKQRIALIRNL 148
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 53.0 bits (128), Expect = 5e-08
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 24/143 (16%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
A+ D++F +G+ +G+ G GSGKS L + L ++G + +G ++
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGEL--- 362
Query: 130 DTLRHNI--LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER--------GIN-- 177
LR I +F +P+ T+ + L + I GG E R G+
Sbjct: 363 RRLRRRIQMVFQDPYSSLNPRMTVGD-ILAEPLRIHGGGSGAERRARVAELLELVGLPPE 421
Query: 178 --------LSGGQKQRVALARAL 192
LSGGQ+QRVA+ARAL
Sbjct: 422 FLDRYPHELSGGQRQRVAIARAL 444
Score = 49.1 bits (118), Expect = 1e-06
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 45/163 (27%)
Query: 64 DVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL----RSTAGKLSREGT-- 117
D R A+ D++F G+++GI G GSGKS L A++ L R T+G++ +G
Sbjct: 18 DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDL 77
Query: 118 CAYVSQEAWITNDTLRHN---ILFGEPFEPQRYYKTLYNCALNTD------IHILPGGDQ 168
S+ LR ++F +P T N + + + G +
Sbjct: 78 LGL-SEREMR---KLRGKRIAMIFQDPM-------TSLNPVMTIGDQIREALRLHGKGSR 126
Query: 169 TEIGERGIN-------------------LSGGQKQRVALARAL 192
E +R + LSGG +QRV +A AL
Sbjct: 127 AEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMAL 169
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 51.7 bits (125), Expect = 6e-08
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 28/145 (19%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
L ++ P+G++V + G G+GK+ LL I+ L +G + +G
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 118 --CAYVSQEAWI-TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
YV + I T+ N+L G + K + P + ER
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYE----LFP-----RLKER 125
Query: 175 ----GINLSGGQKQRVALARALYSN 195
LSGG++Q +A+ARAL S
Sbjct: 126 RKQLAGTLSGGEQQMLAIARALMSR 150
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 52.2 bits (126), Expect = 6e-08
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 38/129 (29%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
A+ ++F +G+ +G+ G G GKS L IL T+G++ EG
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG------------- 74
Query: 130 DTLRHNIL-FGEPFEPQRYYKTLYNCALNTDI-----HILPGGDQTEIGERGINLSGGQK 183
+I + +R + L L + H LSGGQ+
Sbjct: 75 ----KDITKLSKEERRERVLELLEKVGLPEEFLYRYPH---------------ELSGGQR 115
Query: 184 QRVALARAL 192
QR+ +ARAL
Sbjct: 116 QRIGIARAL 124
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 52.8 bits (127), Expect = 7e-08
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 21/141 (14%)
Query: 68 NIALV-DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST-AGKLS--REGTCAYVSQ 123
L+ ++F P G + ICG G GKS+L + IL +L G+L+ +G YV Q
Sbjct: 464 GDVLIESLSFEVPSGNNLLICGPNGCGKSSL-FRILGELWPVYGGRLTKPAKGKLFYVPQ 522
Query: 124 EAWITNDTLRHNILFGE-PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN----- 177
++T TLR I++ + + +R + L + L IL T I ER
Sbjct: 523 RPYMTLGTLRDQIIYPDSSEDMKR--RGLSDKDL---EQILDNVQLTHILEREGGWSAVQ 577
Query: 178 -----LSGGQKQRVALARALY 193
LSGG+KQR+A+AR Y
Sbjct: 578 DWMDVLSGGEKQRIAMARLFY 598
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 51.4 bits (123), Expect = 7e-08
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 76 FFAPKGKLVGICGAVGSGKSALLYAILSQLRST------AGKLSREGTC--AYVSQE--- 124
A KG+L+G+ G G+GK+ LL AIL + AG +G YV Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 125 AWITNDTLRHNILFGEP--FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI-NLSGG 181
AW ++ H ++ G R A+ L TE+ +R + LSGG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVR---DALRRVGLTELADRPVGELSGG 117
Query: 182 QKQRVALARAL 192
Q+QRV +ARAL
Sbjct: 118 QRQRVLVARAL 128
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 51.1 bits (123), Expect = 1e-07
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 51/155 (32%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL D++ KG+ + + G G+GK+ LL + L + G + I
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG-------------QVRIAG 63
Query: 130 D---TLRHNILFGEPFEPQR-----------YYKTLY-NCALNTDIHILPGGDQTEIGER 174
+ LR L P +R +T+Y N AL ++ G + EI R
Sbjct: 64 EDVNRLRGRQL---PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRR 117
Query: 175 -----------------GINLSGGQKQRVALARAL 192
LSGG++QRVA+ARA+
Sbjct: 118 VGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI 152
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 50.7 bits (122), Expect = 1e-07
Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL D++F PKG+ V + G G+GKS LL I + R T GK+ G + +
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGH-----DLSRLKG 71
Query: 130 DT---LRHNILFGEPFEPQR--YYKTLY-NCALNTDIHILPGGDQTEIGER--------- 174
LR I G F+ R +T+Y N AL + G EI R
Sbjct: 72 REIPFLRRQI--GVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVG 126
Query: 175 --------GINLSGGQKQRVALARALYSN 195
LSGG++QRVA+ARA+ +
Sbjct: 127 LKHKARALPSQLSGGEQQRVAIARAIVNQ 155
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 51.2 bits (123), Expect = 2e-07
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 28/142 (19%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL---------SREGTC--- 118
+D NF P + + G GSGK++L+ I R G++ + +G
Sbjct: 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPP 73
Query: 119 -----AYVSQEAWI-TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIG 172
YV Q+A + + T+R N+ +G + + L AL H+L
Sbjct: 74 EKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQL--VALLGIEHLL--------D 123
Query: 173 ERGINLSGGQKQRVALARALYS 194
LSGG+KQRVA+ RAL +
Sbjct: 124 RYPGTLSGGEKQRVAIGRALLT 145
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 51.2 bits (123), Expect = 2e-07
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 24/152 (15%)
Query: 59 HLKAEDVERNI----ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-- 112
+L +++ + AL DI+ KG+ V + G G GK+ LL I R TAG +
Sbjct: 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ 63
Query: 113 -SREGTCAYVSQE---------AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNT--DI 160
R+ T + A N T+ NI +G + + + + D+
Sbjct: 64 GGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELLDL 121
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARAL 192
LPG ++ G+ LSGGQ+QRVALARAL
Sbjct: 122 VGLPGSERKYPGQ----LSGGQQQRVALARAL 149
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 50.2 bits (121), Expect = 2e-07
Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 30/144 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L I+ KG++V I G GSGKS LL + +G ++ +G ++
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDI---- 72
Query: 130 DTLRHNILFGEPFEPQRY----YKT-LYNCALNTDIHIL--PGGDQTEIGER-----GI- 176
LR + G F Q++ + T L N L + + + E G+
Sbjct: 73 LKLRRKV--GMVF--QQFNLFPHLTVLENVTL-APVKVKKLSKAEAREKALELLEKVGLA 127
Query: 177 --------NLSGGQKQRVALARAL 192
LSGGQ+QRVA+ARAL
Sbjct: 128 DKADAYPAQLSGGQQQRVAIARAL 151
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 49.3 bits (118), Expect = 3e-07
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 35/147 (23%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L +NF A +G+++ + GA G+GKS LL + LR +G + +G +
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGE-----PLDYSRK 61
Query: 130 DTLRHN----ILFGEPFEPQRYYKTLYNCALNTDIHILP---GGDQTEIGER-------- 174
L ++F +P + Q + + D+ P G + E+ R
Sbjct: 62 GLLERRQRVGLVFQDP-DDQLFAADVDQ-----DVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 175 GIN---------LSGGQKQRVALARAL 192
G + LSGG+K+RVA+A A+
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAV 142
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 50.4 bits (121), Expect = 4e-07
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 27/141 (19%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA---------- 119
A+ DI+ KG+ V + G G GK+ LL I + ++G++ +G
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPI 79
Query: 120 -YVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHI-----LPGGDQTEIG 172
V Q A + T+ N+ FG + +I L
Sbjct: 80 GMVFQSYALFPHMTVEENVAFG---------LKVRKKLKKAEIKARVEEALELVGLEGFA 130
Query: 173 ERGIN-LSGGQKQRVALARAL 192
+R + LSGGQ+QRVALARAL
Sbjct: 131 DRKPHQLSGGQQQRVALARAL 151
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 49.5 bits (119), Expect = 4e-07
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 27/146 (18%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL DI+ PKG++ + G G GKS LL +L++L EG ++ + +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 130 DT---LRHNI--LFGEPFEPQRYYKTLY-NCALNTDIH-ILPGGDQTEIGER-------- 174
LR + +F +P P ++Y N A +H I + E E
Sbjct: 74 VDVLELRRRVGMVFQKPN-PFP--GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW 130
Query: 175 --------GINLSGGQKQRVALARAL 192
+ LSGGQ+QR+ LARAL
Sbjct: 131 DEVKDRLHALGLSGGQQQRLCLARAL 156
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 48.9 bits (117), Expect = 4e-07
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 31/136 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------- 116
L +++F G+ +GI G G+GKS L+ A+ L + GK+ +G
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 117 TCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI 176
+ + Q+ + + T+R N+ +PF+ +D I + E G+
Sbjct: 83 SLTIIPQDPTLFSGTIRSNL---DPFDEY------------SDEEIY---GALRVSEGGL 124
Query: 177 NLSGGQKQRVALARAL 192
NLS GQ+Q + LARAL
Sbjct: 125 NLSQGQRQLLCLARAL 140
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 48.8 bits (117), Expect = 5e-07
Identities = 49/146 (33%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST-AGKLSREGTCAYVSQEAWITN 129
L DIN G++V + G GSGK+ LL I LRS G L G Y + E +
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLI-GGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 130 DTLRHNILFGEPFEPQRYYKTL---YNCALNTDIHILPGGDQTEIGERGI---------- 176
LR NI G F+ L N + ++ P E ER
Sbjct: 80 --LRRNI--GYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGD 133
Query: 177 -------NLSGGQKQRVALARALYSN 195
NLSGGQKQRVA+ARAL
Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHR 159
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 49.6 bits (119), Expect = 5e-07
Identities = 47/195 (24%), Positives = 71/195 (36%), Gaps = 58/195 (29%)
Query: 56 ESTHLKAEDVERN---IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112
K E +++ + + D++ +G++ I G GSGKS LL I + T+GK+
Sbjct: 22 AKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV 81
Query: 113 SREGT-----------------CAYVSQE-AWITNDTLRHNILFG-------EPFEPQRY 147
+G + V Q A + + T+ N+ FG +R
Sbjct: 82 LIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERA 141
Query: 148 YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVL 207
+ L L H P LSGG +QRV LARAL +
Sbjct: 142 AEALELVGLEGWEHKYPD-----------ELSGGMQQRVGLARALAVD------------ 178
Query: 208 LCPCVSLQSILLMEE 222
ILLM+E
Sbjct: 179 -------PDILLMDE 186
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 48.4 bits (116), Expect = 7e-07
Identities = 46/155 (29%), Positives = 64/155 (41%), Gaps = 40/155 (25%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST-------------------A 109
+ L D+N KGK+ I G GSGKS LL I+ L A
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLLEKFDSGQVYLNGQETPPLNSKKA 70
Query: 110 GKLSREGTCAYVSQE-AWITNDTLRHNILFGEPFEP-------QRYYKTLYNCALNTDIH 161
K RE Y+ Q A I N+T+ N+ G ++ ++ + L LN +
Sbjct: 71 SKFRRE-KLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK 129
Query: 162 ILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196
+I E LSGG++QRVALARA+
Sbjct: 130 -------QKIYE----LSGGEQQRVALARAILKPP 153
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 49.8 bits (120), Expect = 7e-07
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 43/155 (27%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS--------------RE 115
L ++ G+ V + G G GKS LL + G++ R+
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQ 414
Query: 116 GTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD---IHIL--------- 163
VSQ + + TLR N+L P +D I +L
Sbjct: 415 AIS-VVSQRVHLFSATLRDNLLLAAP--------------NASDEALIEVLQQVGLEKLL 459
Query: 164 --PGGDQTEIGERGINLSGGQKQRVALARALYSNS 196
G +GE G LSGG+++R+ +ARAL ++
Sbjct: 460 EDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA 494
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 48.9 bits (117), Expect = 8e-07
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 19/137 (13%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA-----YVSQE 124
A+ D++F A +G++ G+ G G+GK+ LL I + L +GK++ +G +V ++
Sbjct: 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRK 76
Query: 125 AWITND--------TLRHNIL-FGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERG 175
+ T R N+ F R K + + R
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSR--KEI---KARIAELSKRLQLLEYLDRRV 131
Query: 176 INLSGGQKQRVALARAL 192
S G KQ+VA+ARAL
Sbjct: 132 GEFSTGMKQKVAIARAL 148
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 46.9 bits (112), Expect = 1e-06
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 26/126 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L +++ +G+ + + G GSGKS LL + L+ G+++ +G
Sbjct: 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV------PVSDLE 70
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALA 189
L I LN ++ + +G R SGG++QR+ALA
Sbjct: 71 KALSSLI-----------------SVLNQRPYLFDTTLRNNLGRR---FSGGERQRLALA 110
Query: 190 RALYSN 195
R L +
Sbjct: 111 RILLQD 116
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 47.0 bits (113), Expect = 2e-06
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 34/144 (23%)
Query: 60 LKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--T 117
L+ + A+ D++F G++VGI G VG+G++ L A+ +G+++ +G
Sbjct: 5 LEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV 64
Query: 118 CAYVSQEA------WITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEI 171
++A ++ D R ++ A N + L
Sbjct: 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSV------------AENIALSSL-------- 104
Query: 172 GERGINLSGGQKQRVALARALYSN 195
LSGG +Q+V LAR L +
Sbjct: 105 ------LSGGNQQKVVLARWLARD 122
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 48.1 bits (115), Expect = 2e-06
Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 54/188 (28%)
Query: 61 KAEDVERN---IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT 117
KAE +++ + + D + +G++ I G GSGKS L+ + + T G++ +G
Sbjct: 31 KAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGK 90
Query: 118 -CAYVSQEAWITNDTLRHNI--------LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQ 168
A +S + R I L P R L N A ++ +P ++
Sbjct: 91 DIAKLSAAELR--ELRRKKISMVFQSFALL-----PHR--TVLENVAFGLEVQGVPKAER 141
Query: 169 TEIGERGIN--------------LSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214
E + LSGG +QRV LARAL ++
Sbjct: 142 EERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDP------------------ 183
Query: 215 QSILLMEE 222
ILLM+E
Sbjct: 184 -DILLMDE 190
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 48.5 bits (116), Expect = 2e-06
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAI--LSQLRSTAGKLSREGTCA--YVSQEAWIT 128
++NF G+ + I G G+GK++LL A+ L S G++S A ++ Q ++
Sbjct: 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS--GRISMPADSALLFLPQRPYLP 468
Query: 129 NDTLRHNILF---GEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQR 185
TLR + + F L+ L L E LSGG++QR
Sbjct: 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-----DEEDRWDRVLSGGEQQR 523
Query: 186 VALARALY 193
+A AR L
Sbjct: 524 LAFARLLL 531
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 47.6 bits (113), Expect = 2e-06
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 13/139 (9%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------- 117
L + + G+ VGICG GSGKS+L A + GK+ +G
Sbjct: 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96
Query: 118 CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN 177
+ + Q+ + + ++R N+ R ++ L L + LPGG + E G N
Sbjct: 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGEN 156
Query: 178 LSGGQKQRVALARALYSNS 196
S GQ+Q LARA S
Sbjct: 157 FSVGQRQLFCLARAFVRKS 175
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 48.1 bits (114), Expect = 3e-06
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 121 VSQEAWITNDTLRHNILFG-EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLS 179
VSQE + N ++ NI FG E + + A++ I LP T +G G +LS
Sbjct: 1301 VSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLS 1360
Query: 180 GGQKQRVALARAL 192
GGQKQR+A+ARAL
Sbjct: 1361 GGQKQRIAIARAL 1373
Score = 36.2 bits (83), Expect = 0.018
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 163 LPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
LP +T +G LSGGQKQR+++ARA+ N
Sbjct: 565 LPDKYETLVGSNASKLSGGQKQRISIARAIIRN 597
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 46.8 bits (112), Expect = 4e-06
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 27/143 (18%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL---------------SREGT 117
D++ G++VG+ G G+GK+ Y I+ +R +GK+ +R G
Sbjct: 22 DVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81
Query: 118 CAYVSQEAWITND-TLRHNI-LFGEPFEPQRYY---KTLYNCALNTDIHILPGGDQTEIG 172
Y+ QEA I T+ NI E E K + AL + HI D
Sbjct: 82 -GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELD-ALLEEFHITHLRDS---- 135
Query: 173 ERGINLSGGQKQRVALARALYSN 195
+ +LSGG+++RV +ARAL +N
Sbjct: 136 -KAYSLSGGERRRVEIARALAAN 157
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 47.3 bits (113), Expect = 4e-06
Identities = 43/144 (29%), Positives = 57/144 (39%), Gaps = 30/144 (20%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT---------- 117
L D+N G+ V + G G GKS LL I T+G++ +G
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR 75
Query: 118 -CAYVSQE-AWITNDTLRHNILFG-----EPFE--PQRYYKTLYNCALNTDIHILPGGDQ 168
A V Q A + T+ NI FG P +R + L ++ P
Sbjct: 76 GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ-- 133
Query: 169 TEIGERGINLSGGQKQRVALARAL 192
LSGGQ+QRVALARAL
Sbjct: 134 ---------LSGGQRQRVALARAL 148
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 47.4 bits (113), Expect = 5e-06
Identities = 51/165 (30%), Positives = 72/165 (43%), Gaps = 46/165 (27%)
Query: 53 NGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-RSTAGK 111
+GEE +V + I+L DI G++V I GA GSGKS L+ IL L + T+G
Sbjct: 16 SGEEQV-----EVLKGISL-DIY----AGEMVAIVGASGSGKSTLM-NILGCLDKPTSGT 64
Query: 112 LSREGTCAYVSQEAWITNDTL-----RHNILFGEPFEPQRYY-KTLYNCALNTDI-HILP 164
G A + D L H FG F QRY+ + A N ++ +
Sbjct: 65 YRVAGQDV-----ATLDADALAQLRREH---FGFIF--QRYHLLSHLTAAQNVEVPAVYA 114
Query: 165 GGDQTEIGERGI-----------------NLSGGQKQRVALARAL 192
G ++ + R LSGGQ+QRV++ARAL
Sbjct: 115 GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL 159
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 46.4 bits (110), Expect = 5e-06
Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS----------REGTCA 119
AL D +F P G + + G GSGKS L A++ +R +GK+S ++ A
Sbjct: 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVA 81
Query: 120 YVSQEA---WITNDTLRHNILFGEPFEPQRY-YKTLYNCALNTDIHILPGG----DQTEI 171
YV Q W + ++ G RY + A D I+ D E
Sbjct: 82 YVPQSEEVDWSFPVLVEDVVMMG------RYGHMGWLRRAKKRDRQIVTAALARVDMVEF 135
Query: 172 GERGI-NLSGGQKQRVALARAL 192
R I LSGGQK+RV LARA+
Sbjct: 136 RHRQIGELSGGQKKRVFLARAI 157
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 45.9 bits (109), Expect = 7e-06
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 35/143 (24%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITND 130
L +N +G+ + + G G GKS LL I + T+G + EG ++ IT
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEG------KQ--ITEP 52
Query: 131 TLRHNILFGEPFEPQRY----YKTLY-NCALNTD--IHILPGGDQTEIGERGINL----- 178
++F Q Y + T+ N AL D + L ++ I E I L
Sbjct: 53 GPDRMVVF------QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTE 106
Query: 179 ---------SGGQKQRVALARAL 192
SGG KQRVA+ARAL
Sbjct: 107 AADKRPGQLSGGMKQRVAIARAL 129
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 45.7 bits (109), Expect = 7e-06
Identities = 41/151 (27%), Positives = 57/151 (37%), Gaps = 48/151 (31%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL D+N G+ V + G G GK+ L I T+G++ Y+
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI-------YIGGR--DVT 65
Query: 130 DTLRHNILFGEPFEP------QRY----YKTLY-NCALNTDIHILPGGDQTEIGER---- 174
D P + Q Y + T+Y N A + +P + EI ER
Sbjct: 66 DL--------PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP---KDEIDERVREV 114
Query: 175 ----GIN---------LSGGQKQRVALARAL 192
I LSGGQ+QRVAL RA+
Sbjct: 115 AELLQIEHLLDRKPKQLSGGQRQRVALGRAI 145
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 45.8 bits (109), Expect = 8e-06
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 60 LKAEDVERNIA---LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116
LK E++ ++ L +++ +G I G GSGKS LL I ++ +GK+ G
Sbjct: 1 LKVENLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNG 60
Query: 117 T-----------CAYVSQE-AWITNDTLRHNILFG---EPFEPQRYYKTLYNCA--LNTD 159
+YV Q A + T+ NI +G + + + + A L D
Sbjct: 61 KDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID 120
Query: 160 IHILPGGDQTEIGERGINLSGGQKQRVALARAL 192
H+L +T LSGG++QRVA+ARAL
Sbjct: 121 -HLLNRKPET--------LSGGEQQRVAIARAL 144
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 45.6 bits (108), Expect = 9e-06
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 18/136 (13%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS-----------REGTC--A 119
++ AP G L G+ G GSGKS LL + LR AG + R A
Sbjct: 19 GVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78
Query: 120 YVSQEAWI-TNDTLRHNILFGE-PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN 177
V Q++ T+R + G P + ++ A+ D L + + + +R ++
Sbjct: 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV-VD-RALARTELSHLADRDMS 136
Query: 178 -LSGGQKQRVALARAL 192
LSGG++QRV +ARAL
Sbjct: 137 TLSGGERQRVHVARAL 152
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 45.1 bits (107), Expect = 9e-06
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 35/150 (23%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--CAY------- 120
AL IN G+ V + G G+GKS LL I + T+G + G
Sbjct: 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75
Query: 121 -------VSQEA-WITNDTLRHNILF-----GEPFE--PQRYYKTLYNCALNTDIHILPG 165
V Q+ + + + N+ F G P +R L L+ LP
Sbjct: 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPA 135
Query: 166 GDQTEIGERGINLSGGQKQRVALARALYSN 195
LSGG++QRVA+ARA+ ++
Sbjct: 136 E-----------LSGGEQQRVAIARAIVNS 154
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 45.4 bits (108), Expect = 1e-05
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 43/154 (27%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEA 125
N AL +++F +G+ V I G GSGKS + + L+ +G++ +G
Sbjct: 20 SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGIT------- 72
Query: 126 WITNDTLRH-----NILFGEP---------------------FEPQRYYKTLYNCALNTD 159
I+ + L+ I+F P P++ + + A
Sbjct: 73 -ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVG 131
Query: 160 IHILPGGDQTEIGER-GINLSGGQKQRVALARAL 192
+ + ++ NLSGGQKQRVA+A L
Sbjct: 132 M--------EDYLDKEPQNLSGGQKQRVAIASVL 157
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 45.0 bits (107), Expect = 1e-05
Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 51/175 (29%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG------------- 116
A+ ++N KG+ + + G GSGK+ + I + T+G++ +G
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75
Query: 117 TCAYVSQEAWI-TNDTLRHNI-----LFGEPFEP--QRYYKTLYNCALNTDIHILPGGDQ 168
YV Q+ + + T+ NI L P E +R + L L G D
Sbjct: 76 KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLA----------LVGLDP 125
Query: 169 TEIGER-GINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEE 222
E +R LSGGQ+QRV +ARAL ++ +LLM+E
Sbjct: 126 AEFADRYPHELSGGQQQRVGVARALAAD-------------------PPLLLMDE 161
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 45.0 bits (107), Expect = 1e-05
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 38/160 (23%)
Query: 60 LKAEDVERNIA----LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
++AE++ ++A L ++ G+++ I G G+GKS LL A+ +L +G+++
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61
Query: 116 GTCAYVSQEAWITNDTLRH------NILFGEPF-----------------EPQRYYKTLY 152
G V +W + RH N PF EP+ +
Sbjct: 62 G----VPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA 117
Query: 153 NCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL 192
TD+ L G D LSGG++QRV LAR L
Sbjct: 118 QALAATDLSGLAGRDYRT-------LSGGEQQRVQLARVL 150
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 44.1 bits (105), Expect = 2e-05
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 36/133 (27%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITND 130
L +++ A G+L I G G+GKS LL A+ AG+ + G VS E I
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNAL-------AGRRTGLG----VSGEVLIN-- 71
Query: 131 TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGE--------RGINLSGGQ 182
G P + + + K + DI T + E RG+ SGG+
Sbjct: 72 --------GRPLDKRSFRK-IIGYVPQDDILH---PTLT-VRETLMFAAKLRGL--SGGE 116
Query: 183 KQRVALARALYSN 195
++RV++A L SN
Sbjct: 117 RKRVSIALELVSN 129
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 44.5 bits (106), Expect = 2e-05
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 27/157 (17%)
Query: 60 LKAEDVERNI----ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL--- 112
L+AE++ + + ++ +G++VG+ G G+GK+ Y I+ ++ +GK+
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 113 ------------SREGTCAYVSQEAWITND-TLRHNIL-FGEPFEPQRYYKTLYNCALNT 158
+R G Y+ QEA I T+ NIL E + + L
Sbjct: 61 GQDITKLPMHKRARLGIG-YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE 119
Query: 159 DIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
+ HI + +LSGG+++RV +ARAL +N
Sbjct: 120 EFHITHLRKS-----KASSLSGGERRRVEIARALATN 151
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 44.1 bits (105), Expect = 2e-05
Identities = 46/155 (29%), Positives = 62/155 (40%), Gaps = 29/155 (18%)
Query: 59 HLKAEDV--ERN--IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114
L+ ED+ R + ++F G+ + + G GSGK+ LL I L AG +
Sbjct: 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61
Query: 115 EG----------TCAYVS-QEAWITNDTLRHNILFGEPF---EPQRYYKTLYNCALNTDI 160
+G C Y+ + A T+ N+ F F E L L
Sbjct: 62 DGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA 121
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
H LP G LS GQK+RVALAR L SN
Sbjct: 122 H-LPFG----------YLSAGQKRRVALARLLVSN 145
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 44.6 bits (106), Expect = 2e-05
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 31/151 (20%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAI-----LSQLRSTAGKLSREGTCAYVS 122
AL +IN PK ++ + G G GKS LL ++ L GK+ +G Y
Sbjct: 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDK 73
Query: 123 QEAWITNDTLRHNILFGEPFE-PQRYYKTLY-NCALNTDIH-ILPGGDQTEIGER----- 174
+ I LR + G F+ P + ++Y N A +H I + EI E
Sbjct: 74 K---IDVVELRRRV--GMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKA 128
Query: 175 -------------GINLSGGQKQRVALARAL 192
+ LSGGQ+QR+ +ARAL
Sbjct: 129 ALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 43.9 bits (104), Expect = 3e-05
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 50/167 (29%)
Query: 56 ESTHLKAEDVERNIALVD-INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114
++ + DV++ + VD ++F G++ G+ G G+GK+ L + L AG +
Sbjct: 5 DALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64
Query: 115 EGTCAYVSQEAWITNDTLRHNILFGEPFEPQR----------------------YYKTLY 152
+G D ++ EP E +R Y+ LY
Sbjct: 65 DGF------------DVVK------EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY 106
Query: 153 NC---ALNTDIHILPGGDQTEIGE----RGINLSGGQKQRVALARAL 192
L + L D+ + E R S G +Q+VA+ARAL
Sbjct: 107 GLKGDELTARLEEL--ADRLGMEELLDRRVGGFSTGMRQKVAIARAL 151
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 43.7 bits (104), Expect = 3e-05
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 24/140 (17%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK--------------LSRE 115
L DI+ KG++ G G G+GK+ + IL ++ +G+ L R
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74
Query: 116 GTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERG 175
G A + + N T R N+ R D + G + ++
Sbjct: 75 G--ALIEAPGFYPNLTARENLRLL-----ARLLGIRKK---RIDEVLDVVGLKDSAKKKV 124
Query: 176 INLSGGQKQRVALARALYSN 195
S G KQR+ +A AL N
Sbjct: 125 KGFSLGMKQRLGIALALLGN 144
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 44.0 bits (104), Expect = 3e-05
Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 29/143 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L D++F PKG+ I G GSGKS + ++ + +G++ IT+
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQA--------ITD 75
Query: 130 DTLRH-----NILFGEPFEPQRYYKTL-YNCALNTDIHILPGGDQTEIGERGIN------ 177
D I+F P + Q + Y+ A + H +P + +
Sbjct: 76 DNFEKLRKHIGIVFQNP-DNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE 134
Query: 178 --------LSGGQKQRVALARAL 192
LSGGQKQRVA+A L
Sbjct: 135 RADYEPNALSGGQKQRVAIAGVL 157
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 43.8 bits (103), Expect = 4e-05
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 48/168 (28%)
Query: 62 AEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALL----------------YAILSQL 105
A+ ++ AL ++ G++V + G GSGKS LL +L +
Sbjct: 11 AKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70
Query: 106 RSTAGKLSRE-----GTCAYVSQEAWITND-TLRHNILFG---------------EPFEP 144
G+L+R+ Y+ Q+ + N ++ N+L G +
Sbjct: 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQK 130
Query: 145 QRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL 192
QR + L + H +R LSGGQ+QRVA+ARAL
Sbjct: 131 QRALQALTRVGMVHFAH-----------QRVSTLSGGQQQRVAIARAL 167
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 42.5 bits (101), Expect = 5e-05
Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 38/124 (30%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAI--LSQLRS-TAGKLSREGTCAYVSQEAWITN 129
D++F G + I G G+GKS+L A+ L S G E ++ Q ++
Sbjct: 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDL-LFLPQRPYLPL 77
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALA 189
TLR + I P D LSGG++QR+A A
Sbjct: 78 GTLR-------------------------EQLIYPWDD---------VLSGGEQQRLAFA 103
Query: 190 RALY 193
R L
Sbjct: 104 RLLL 107
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 43.6 bits (103), Expect = 5e-05
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 36/172 (20%)
Query: 50 EKSNGEESTHLKAEDVE----RNIALVDINFFAPKGKLVGICGAVGSGKSALL--YAILS 103
NG E T L+ E++ +A+ ++ PK ++ G G GKS +L + L+
Sbjct: 2 STLNGTE-TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN 60
Query: 104 QLRSTA---GKLSREGTCAYVSQEAWITNDTLRHNILFGEPFE-PQRYYKTLY-NCALNT 158
L GK++ G Y + +R I G F+ P + K++Y N A
Sbjct: 61 DLIPGFRVEGKVTFHGKNLYAPD---VDPVEVRRRI--GMVFQKPNPFPKSIYDNIAYGA 115
Query: 159 DIHILPGGDQTEIGER------------------GINLSGGQKQRVALARAL 192
I+ G D E+ ER G++LSGGQ+QR+ +ARA+
Sbjct: 116 RINGYKG-DMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 44.1 bits (105), Expect = 5e-05
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 33/138 (23%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC--AYVSQEAWITND 130
D++F P G +VG+ G G+GKS L I Q + +G + T AYV Q + D
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ----SRD 395
Query: 131 TLRHN-------------ILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTE-IGERGI 176
L N I G+ P R Y +N G DQ + +G+
Sbjct: 396 ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFN---------FKGSDQQKKVGQ--- 443
Query: 177 NLSGGQKQRVALARALYS 194
LSGG++ RV LA+ L S
Sbjct: 444 -LSGGERNRVHLAKTLKS 460
Score = 31.4 bits (72), Expect = 0.51
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 177 NLSGGQKQRVALARALYSN 195
LSGG+++RVAL R L S
Sbjct: 161 KLSGGERRRVALCRLLLSK 179
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 43.5 bits (103), Expect = 5e-05
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 65 VERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS----------- 113
AL ++ +G V + G+ G+GKS LL AI L+ T+G++
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 114 --REGTCAYVSQEAWI---TNDTLRHNILFGEPFEPQRYYKTLYNCALNT--------DI 160
R A V Q+ T+ N+ E R K + ALN +
Sbjct: 76 AKRANLLARVFQDPLAGTAPELTIEENLALAE----SRGKKRGLSSALNERRRSSFRERL 131
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARA 191
L G + + +R LSGGQ+Q ++L A
Sbjct: 132 ARLGLGLENRLSDRIGLLSGGQRQALSLLMA 162
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 43.1 bits (102), Expect = 6e-05
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 35/149 (23%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKLSREGTCAYVSQEAWIT 128
AL DI P+G+ + + G G+GKS+LL +L+ L +G L+ G S+
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLL-RVLNLLEMPRSGTLNIAGNHFDFSKT---P 72
Query: 129 ND----TLRHNILFGEPFEPQRY----YKTLYNCALNTDIHILPGGDQTEIGERGI---- 176
+D LR N+ G F Q+Y + T+ + +L G + + R
Sbjct: 73 SDKAIRELRRNV--GMVF--QQYNLWPHLTVQQNLIEAPCRVL-GLSKDQALARAEKLLE 127
Query: 177 -------------NLSGGQKQRVALARAL 192
+LSGGQ+QRVA+ARAL
Sbjct: 128 RLRLKPYADRFPLHLSGGQQQRVAIARAL 156
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 43.2 bits (102), Expect = 6e-05
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--CAYVSQEAWIT 128
L D++ GK++ + G G+GKS L+ +L + G + R G YV Q+ ++
Sbjct: 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL- 78
Query: 129 NDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN-----LSGGQK 183
+ TL P R+ + L D ILP + + G I+ LSGG+
Sbjct: 79 DTTL--------PLTVNRFLR-LRPGTKKED--ILPALKRVQAGHL-IDAPMQKLSGGET 126
Query: 184 QRVALARAL 192
QRV LARAL
Sbjct: 127 QRVLLARAL 135
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 43.0 bits (102), Expect = 7e-05
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYV 121
AL DI+F KG+ VGI G G+GKS LL I + T+GK+ G A +
Sbjct: 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL 93
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 43.3 bits (103), Expect = 8e-05
Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 46/169 (27%)
Query: 60 LKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-- 117
L+ ++ + D++F G+++GI G VG+G++ L A+ +++G++ +G
Sbjct: 264 LEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPV 323
Query: 118 ------------CAYVS----QEAWITNDTLRHNILFG---------------EPFEPQR 146
AYV E + + ++ NI E +R
Sbjct: 324 RIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAER 383
Query: 147 YYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
Y + L I + IG LSGG +Q+V LAR L ++
Sbjct: 384 YIRRL---------RIKTPSPEQPIG----TLSGGNQQKVVLARWLATD 419
Score = 41.7 bits (99), Expect = 2e-04
Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 41/167 (24%)
Query: 60 LKAEDVERN----IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L+ + ++ AL ++ G++ + G G+GKS L+ + +G++ +
Sbjct: 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILID 68
Query: 116 G-TCAY-------------VSQE-AWITNDTLRHNILFGEPFEPQRY-----YKTLYNCA 155
G A+ V QE + + N ++ NI G EP R K + A
Sbjct: 69 GKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGR--EPTRRFGLIDRKAMRRRA 126
Query: 156 ------LNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196
L DI T +G +LS Q+Q V +ARAL ++
Sbjct: 127 RELLARLGLDIDP-----DTLVG----DLSIAQRQMVEIARALSFDA 164
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 42.5 bits (100), Expect = 8e-05
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL DI P+G+ + + G G+GKS+LL +L+ L ++ R GT +
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLL-RVLNLL-----EMPRSGTLNIAGNHFDFSK 70
Query: 130 D-------TLRHNILFGEPFE-----------------PQRYYKTLYNCALNTDIHILPG 165
LR N+ G F+ P R + AL +L
Sbjct: 71 TPSDKAIRDLRRNV--GMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKR 128
Query: 166 GDQTEIGER-GINLSGGQKQRVALARAL 192
+R ++LSGGQ+QRVA+ARAL
Sbjct: 129 LRLKPYADRYPLHLSGGQQQRVAIARAL 156
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 42.7 bits (101), Expect = 8e-05
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 29/142 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL ++N G+ VG+ G GSGKS L+ + L+ T+GK+ +G ++ +++
Sbjct: 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGV-DITDKKVKLSD 80
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILP---GGDQTEIGER--------GIN- 177
+ ++F P E Q + +T+ DI P G + EI R G++
Sbjct: 81 IRKKVGLVFQYP-EYQLFEETIEK-----DIAFGPINLGLSEEEIENRVKRAMNIVGLDY 134
Query: 178 ----------LSGGQKQRVALA 189
LSGGQK+RVA+A
Sbjct: 135 EDYKDKSPFELSGGQKRRVAIA 156
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 43.3 bits (102), Expect = 8e-05
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-------------T 117
L ++ +G LVG+ G G+GK+ LL AI L TAG + G
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 118 CAYVSQEAWITND-TLRHNILFGEPFEPQRYYKTLYNCALNTDIHI----LPGGDQTEIG 172
A V Q+ ++ + +R + G P R + ++ TD + +
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGR--TPHR---SRFDTWTETDRAAVERAMERTGVAQFA 133
Query: 173 ERGI-NLSGGQKQRVALARAL 192
+R + +LSGG++QRV LARAL
Sbjct: 134 DRPVTSLSGGERQRVLLARAL 154
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 42.3 bits (100), Expect = 8e-05
Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 30/147 (20%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-RSTAGKLSREGTCAYVSQEAWITN 129
L ++ KG++V I G+ GSGKS LL+ +L L T+G++ G S +N
Sbjct: 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPTSGEVLFNG----QSLSKLSSN 75
Query: 130 D--TLRHNILFGEPFEPQRYYKTLYNCAL-NTDIHILPGG-DQTEIGERGIN-------- 177
+ LR N G F Q ++ AL N + +L G E ER
Sbjct: 76 ERAKLR-NKKLG--FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE 132
Query: 178 ---------LSGGQKQRVALARALYSN 195
LSGG++QRVA+ARAL +
Sbjct: 133 HRINHRPSELSGGERQRVAIARALVNQ 159
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 42.5 bits (100), Expect = 9e-05
Identities = 39/137 (28%), Positives = 51/137 (37%), Gaps = 38/137 (27%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---TCAYVS--------QEAWI 127
+G++ I G GSGKS LL I +G++ G T A + QE
Sbjct: 22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE--- 78
Query: 128 TNDTLRH-----NILFG-------EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERG 175
N+ H N+ G + Q L L LPG
Sbjct: 79 -NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG---------- 127
Query: 176 INLSGGQKQRVALARAL 192
LSGG++QRVALAR L
Sbjct: 128 -ELSGGERQRVALARVL 143
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 42.5 bits (101), Expect = 9e-05
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 26/146 (17%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE--AWI 127
AL DIN PK K+ + G G GKS LL L+++ EG +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRC-LNRMNDLIPGARVEGEVLLDGKNIYDPK 80
Query: 128 TND-TLRHNILFGEPF-EPQRYYKTLY-NCALNTDIHILPGGDQTEIGER---------- 174
+ LR + G F +P + ++Y N A +H + + EI E
Sbjct: 81 VDVVELRRRV--GMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDE 138
Query: 175 --------GINLSGGQKQRVALARAL 192
+ LSGGQ+QR+ +ARAL
Sbjct: 139 VKDRLHKSALGLSGGQQQRLCIARAL 164
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 41.3 bits (98), Expect = 1e-04
Identities = 32/135 (23%), Positives = 45/135 (33%), Gaps = 58/135 (42%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTL 132
DI+ G +G+ G G+GKS LL I +L EG T
Sbjct: 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD------EGIV------------TW 59
Query: 133 RHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL 192
+ G Y+ +Q LSGG+K R+ALA+ L
Sbjct: 60 GSTVKIG-------YF------------------EQ---------LSGGEKMRLALAKLL 85
Query: 193 YSNSFEQQTFHFLVL 207
N + L+L
Sbjct: 86 LENP------NLLLL 94
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 41.9 bits (99), Expect = 1e-04
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 14/138 (10%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTA---------GKLSREGT-- 117
L D++ G+++ I G+ GSGK+ LL AI ++ G+ +
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80
Query: 118 --CAYVSQ-EAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
AYV Q + + T+R + + R D+ + G
Sbjct: 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140
Query: 175 GINLSGGQKQRVALARAL 192
+SGG+++RV++A L
Sbjct: 141 VKGISGGERRRVSIAVQL 158
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 42.9 bits (101), Expect = 1e-04
Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 52/177 (29%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAI--LSQLRSTAGK----LSREGTCAYV-- 121
L +I+F +G+++GI G G+GKS L++ + + Q T+G+ ++ C YV
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 122 ----------------SQEA--WITNDTLRHN------ILFGEPF---EPQRYYKTLYNC 154
+E W +D LR I+ F +
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 155 ----------ALNTDIHILPGGDQTEIGER----GINLSGGQKQRVALARALYSNSF 197
A+ + ++ + ++ R +LSGG+KQRV LAR L F
Sbjct: 135 LEEIGYEGKEAVGRAVDLI---EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPF 188
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 41.3 bits (98), Expect = 1e-04
Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 50/132 (37%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKLSREGTCAYVSQEAWIT 128
AL ++ +G++ + G G+GKS L+ ILS L +G++ +G
Sbjct: 15 ALDGVSLSVRRGEVHALLGENGAGKSTLM-KILSGLYKPDSGEILVDGK----------- 62
Query: 129 NDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN----LSGGQKQ 184
+ F P + +R GI LS G++Q
Sbjct: 63 ------EVSFASPRDARR---------------------------AGIAMVYQLSVGERQ 89
Query: 185 RVALARALYSNS 196
V +ARAL N+
Sbjct: 90 MVEIARALARNA 101
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 41.7 bits (99), Expect = 1e-04
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 61 KAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT 117
+ +V AL D++F P+G+ +G+ G G+GKS LL + +G ++ G
Sbjct: 28 RKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR 84
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 41.6 bits (98), Expect = 2e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQKQRVALARAL
Sbjct: 134 LSGGQKQRVALARAL 148
Score = 27.7 bits (62), Expect = 6.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALL 98
ER + L ++ P G+ V + G G GKS LL
Sbjct: 24 ERTV-LNQLDLHIPAGQFVAVVGRSGCGKSTLL 55
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 41.6 bits (98), Expect = 2e-04
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 30/150 (20%)
Query: 61 KAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAY 120
E+ +AL D+N KG+ + I G GSGKS + + + L + GK+ +G
Sbjct: 16 SNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTS 75
Query: 121 VSQEAW-ITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILP---GGDQTEIGERGI 176
+ W I N + ++F P + Q + + D+ P G EI ER
Sbjct: 76 DEENLWDIRN---KAGMVFQNP-DNQ-----IVATIVEEDVAFGPENLGIPPEEIRERVD 126
Query: 177 N-----------------LSGGQKQRVALA 189
LSGGQKQRVA+A
Sbjct: 127 ESLKKVGMYEYRRHAPHLLSGGQKQRVAIA 156
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 41.9 bits (99), Expect = 2e-04
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 57/166 (34%)
Query: 64 DVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQ 123
V+ A+ I+ +G+ +G+ G GSGKS L A+L + S +G + Q
Sbjct: 296 TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-------QGEIRFDGQ 348
Query: 124 EAWITNDT------LRHN--ILFGEPFEPQRYYKTLYNCALNTDIHIL-----------P 164
+ I + LR ++F +P+ +L+ + + P
Sbjct: 349 D--IDGLSRKEMRPLRRRMQVVFQDPYG-----------SLSPRMTVGQIIEEGLRVHEP 395
Query: 165 GGDQTEIGERGIN------------------LSGGQKQRVALARAL 192
E +R I SGGQ+QR+A+ARAL
Sbjct: 396 KLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARAL 441
Score = 31.9 bits (73), Expect = 0.44
Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 28/158 (17%)
Query: 61 KAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAY 120
E A+ I+F G+ + + G GSGKS +IL L + G+ +
Sbjct: 17 HQEGGTVE-AVKGISFDIEAGETLALVGESGSGKSVTALSIL-GLLPSPAAAHPSGSILF 74
Query: 121 VSQEAW-ITNDTLRH------NILFGEPF--------------EPQRYYKTLYNCALNTD 159
++ + LR ++F EP E R ++ L A
Sbjct: 75 DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARAR 134
Query: 160 IHILPGGDQTEIGERGIN-----LSGGQKQRVALARAL 192
L E+ ++ LSGGQ+QRV +A AL
Sbjct: 135 ALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMAL 172
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 40.9 bits (96), Expect = 3e-04
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 20/138 (14%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------- 117
L DI+ G + I G G+GKS L+ I + T G + +G
Sbjct: 19 LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK 78
Query: 118 CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN 177
V Q+ + T++ NI +G + ++ Y ++ G ++ N
Sbjct: 79 IGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSI-------VGLNKEYATRDVKN 131
Query: 178 LSGGQKQRVALARALYSN 195
LSGG+ QRV++AR L +N
Sbjct: 132 LSGGEAQRVSIARTLANN 149
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 41.2 bits (97), Expect = 3e-04
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 41 RKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYA 100
K Y SKE L AL I+F KG++VG G G+GK+ L
Sbjct: 7 SKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKI 66
Query: 101 ILSQLRSTAGKLS 113
+ L+ T+G++
Sbjct: 67 LSGLLQPTSGEVR 79
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 40.6 bits (96), Expect = 3e-04
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW 126
+ AL ++ G + G+ G G+GK+ L+ + + ++G + +G Q+
Sbjct: 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG------QDVL 64
Query: 127 ITNDTLRHNILFGEPFEPQ--RYYKTL-------YNCAL----NTDIH-----ILPGGDQ 168
LR I G + PQ Y Y L + ++ +L +
Sbjct: 65 KQPQKLRRRI--G--YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL 120
Query: 169 TEIGERGIN-LSGGQKQRVALARAL 192
+ ++ I LSGG ++RV +A+AL
Sbjct: 121 GDRAKKKIGSLSGGMRRRVGIAQAL 145
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 40.8 bits (96), Expect = 3e-04
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 23/140 (16%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC--------AYV 121
AL DIN G+L+ + G G GK+ LL I + G ++ +G V
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 122 SQ-EAWITNDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI 176
Q E + ++ N+ FG + QR +L +R I
Sbjct: 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAH---------QMLKKVGLEGAEKRYI 126
Query: 177 -NLSGGQKQRVALARALYSN 195
LSGGQ+QRV +ARAL +N
Sbjct: 127 WQLSGGQRQRVGIARALAAN 146
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 40.7 bits (96), Expect = 3e-04
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QRVA+ARAL
Sbjct: 131 LSGGQQQRVAIARAL 145
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 41.0 bits (96), Expect = 3e-04
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 38/165 (23%)
Query: 56 ESTHLKAEDVERNI-----ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG 110
E LK E++ N AL IN KG++ I G G+GKS L + L+ ++G
Sbjct: 2 EDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG 61
Query: 111 KLSREGTCAYVSQEAWITNDTLRHNI--LFGEPFEPQRYYKTLYN----CALNTDIHILP 164
++ +G S++ + LR ++ +F +P + Q + ++Y A+N LP
Sbjct: 62 RILFDGKPIDYSRKGLM---KLRESVGMVFQDP-DNQLFSASVYQDVSFGAVNLK---LP 114
Query: 165 GGDQTEIGER--------GIN---------LSGGQKQRVALARAL 192
+ E+ +R GI LS GQK+RVA+A L
Sbjct: 115 ---EDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 41.4 bits (97), Expect = 3e-04
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 22/138 (15%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-CAYV------- 121
A+ D++ KG++ + GA G GKS LL + + TAG++ +G ++V
Sbjct: 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93
Query: 122 ----SQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALN---TDIHILPGGDQTEIGER 174
A + T+ NI FG + + K +N +H+ Q +
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFG--LKQDKLPKAEIASRVNEMLGLVHM-----QEFAKRK 146
Query: 175 GINLSGGQKQRVALARAL 192
LSGGQ+QRVALAR+L
Sbjct: 147 PHQLSGGQRQRVALARSL 164
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 40.6 bits (96), Expect = 4e-04
Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 52/204 (25%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW 126
A+ D++ KG++ G+ G G+GK+ L + +LR T+G AY++ +
Sbjct: 14 TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT-------AYINGYSI 66
Query: 127 ITNDTL---------RHNILFGE--PFEPQRYY-----KTLYNCALNTDIHILPGGDQTE 170
T+ + + LF E E R+Y ++ + G +
Sbjct: 67 RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK 126
Query: 171 IGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEEVNVYVSKP 230
+R LSGG K++++LA AL S+LL++E
Sbjct: 127 ANKRARTLSGGMKRKLSLAIALIGGP-------------------SVLLLDEP------- 160
Query: 231 IDKSSAVSIAGGSFLWDTLLDSSK 254
+S + A +WD +L+ K
Sbjct: 161 ---TSGLDPASRRAIWDLILEVRK 181
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 40.6 bits (96), Expect = 5e-04
Identities = 40/154 (25%), Positives = 59/154 (38%), Gaps = 36/154 (23%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-----RSTAGKLSREGTC------ 118
A+ ++F KG+++GI G GSGKS L AI+ L R G++ +G
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 119 -----------AYVSQEAWIT--NDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPG 165
A + Q+ +T N + E A I +L
Sbjct: 80 KELRKIRGKEIAMIFQDP-MTSLNPVMTIGDQIAEVLR-LHGKGLSKKEAKERAIELL-- 135
Query: 166 GDQTEIG--ERGIN-----LSGGQKQRVALARAL 192
+ I ER + LSGG +QRV +A AL
Sbjct: 136 -ELVGIPDPERRLKSYPHELSGGMRQRVMIAMAL 168
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 39.6 bits (93), Expect = 5e-04
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 32/132 (24%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEA 125
N+ +D++ P LV + G GSGKS L+ L +GK S+
Sbjct: 8 VHNLQNLDVSI--PLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNK 61
Query: 126 WITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQR 185
I D L+ I G Y TL L+T LSGG+ QR
Sbjct: 62 LIFIDQLQFLIDVGLG------YLTL-GQKLST-------------------LSGGELQR 95
Query: 186 VALARALYSNSF 197
V LA L+S
Sbjct: 96 VKLASELFSEPP 107
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 40.1 bits (94), Expect = 6e-04
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 36/145 (24%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG----------KLSREGTCAYVS 122
+I+ P+GK+ I G G GK+ LL I Q+ G +SR Y
Sbjct: 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL--YTV 82
Query: 123 QE---------AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGE 173
++ A T+ + N+ + P R + L L++ + + +G
Sbjct: 83 RKRMSMLFQSGALFTDMNVFDNVAY-----PLREHTQLPAPLLHSTVMM----KLEAVGL 133
Query: 174 RGI------NLSGGQKQRVALARAL 192
RG LSGG +R ALARA+
Sbjct: 134 RGAAKLMPSELSGGMARRAALARAI 158
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 40.1 bits (94), Expect = 6e-04
Identities = 45/173 (26%), Positives = 61/173 (35%), Gaps = 52/173 (30%)
Query: 48 SKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-R 106
SK GE + L + +G+ V I G GSGKS LL A+L+ L
Sbjct: 13 SKTVGQGEGELSI----------LKGVELVVKRGETVAIVGPSGSGKSTLL-AVLAGLDD 61
Query: 107 STAGKLS-----------------REGTCAYVSQE-AWITNDTLRHNI-----LFGE--- 140
++G++ R +V Q I N T N+ L GE
Sbjct: 62 PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA 121
Query: 141 -PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL 192
+ L L + P LSGG++QRVALARA
Sbjct: 122 DSRAGAK--ALLEAVGLGKRLTHYPA-----------QLSGGEQQRVALARAF 161
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 39.2 bits (91), Expect = 8e-04
Identities = 43/148 (29%), Positives = 60/148 (40%), Gaps = 26/148 (17%)
Query: 64 DVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------ 117
D L I+F P G L+ + G+ G+GK+ LL I L G++ E
Sbjct: 10 DYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDL 69
Query: 118 CAYVSQEAWI-------TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHIL--PGGDQ 168
C Y Q ++ TLR N L+ F P T C L + H++ P G
Sbjct: 70 CTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITEL-CRLFSLEHLIDYPCG-- 126
Query: 169 TEIGERGINLSGGQKQRVALARALYSNS 196
LS GQK++VAL R S +
Sbjct: 127 --------LLSSGQKRQVALLRLWMSKA 146
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 39.4 bits (92), Expect = 0.001
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 36/150 (24%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAI-----------------LSQLRSTAGKLS 113
L +++F +G+++ I G+ GSGKS LL+ + +S+L S A
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84
Query: 114 REGTCAYVSQEAWITND-TLRHNI----LFG--EPFEPQ-RYYKTLYNCALNTDIHILPG 165
R ++ Q + D T N+ L G +P E R + L L +
Sbjct: 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN---- 140
Query: 166 GDQTEIGERGINLSGGQKQRVALARALYSN 195
R LSGG++QRVA+ARAL +N
Sbjct: 141 -------HRPSELSGGERQRVAIARALVNN 163
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 39.2 bits (92), Expect = 0.001
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 22/136 (16%)
Query: 73 DINF-FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG--KLSREGT----------CA 119
D++F G+ + I G G+GK+ LL + LR AG E
Sbjct: 20 DLSFTLNA-GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL 78
Query: 120 YVSQEAWITND-TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINL 178
Y+ + I + T N+ F + F T++ L G + +G L
Sbjct: 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVG---LAGLEDLPVG----QL 131
Query: 179 SGGQKQRVALARALYS 194
S GQ++RVALAR S
Sbjct: 132 SAGQQRRVALARLWLS 147
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 39.6 bits (92), Expect = 0.001
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 20/140 (14%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAI--LSQLRSTAGKLS------------ 113
N L D++ G+L+ + G G GK+ LL AI + G+++
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 114 REGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGE 173
+ G A + + N+ FG Q+ K + + ++ GD
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGDA---AA 132
Query: 174 R-GINLSGGQKQRVALARAL 192
LSGG +QR+A+ARA+
Sbjct: 133 HLPAQLSGGMQQRIAIARAI 152
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 39.4 bits (92), Expect = 0.001
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 31/148 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAI--LSQLRSTA---GKLSREGTCAYVSQE 124
AL D++ P+ ++ + G G GKS L I ++ L A G+L+ G Y +
Sbjct: 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY---D 110
Query: 125 AWITNDTLRHNILFGEPF-EPQRYYKTLY-NCALNTDIHILPGGDQTEIGER-------- 174
A + LR I G F +P + K++Y N A I G D E E
Sbjct: 111 ADVDPVALRRRI--GMVFQKPNPFPKSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALW 167
Query: 175 ----------GINLSGGQKQRVALARAL 192
G++LSGGQ+QR+ +ARA+
Sbjct: 168 DEVKDQLDSSGLDLSGGQQQRLCIARAI 195
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 39.0 bits (91), Expect = 0.001
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 34/146 (23%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR---STAGKLSREGT---------- 117
L ++NF KG++V + G G GKS LL ++ L S G+L
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 118 -CAYVSQEAWITND-TLRHNILFGEPFEPQ-RYYKTLYNCALNTDIHILPGGDQTEIGER 174
+ Q+A + ++ N+LF P + + N AL G
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAAL------------ERSGLD 125
Query: 175 GI------NLSGGQKQRVALARALYS 194
G LSGGQ+ RVAL RAL +
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLA 151
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 38.9 bits (91), Expect = 0.001
Identities = 40/133 (30%), Positives = 54/133 (40%), Gaps = 30/133 (22%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-----TCAY---VS---QE-AW 126
P G++V I G G+GKS LL I +G++ G + VS QE
Sbjct: 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNL 82
Query: 127 ITNDTLRHNILFG-EP------FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLS 179
+ T+ NI G P + ++ L + LPG LS
Sbjct: 83 FAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELS 131
Query: 180 GGQKQRVALARAL 192
GGQ+QRVALAR L
Sbjct: 132 GGQRQRVALARCL 144
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 38.8 bits (91), Expect = 0.001
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYV----SQEAWITNDTLRHNILF 138
L ICG G+GKS +L AI L + R+ V A ++ +
Sbjct: 30 LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY 89
Query: 139 GEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI-NLSGGQKQRVALARAL 192
Y L LP G+ R + LSGG+ +L+ AL
Sbjct: 90 RVERSRGLDYDQFTRIVL------LPQGEFDRFLARPVSTLSGGETFLASLSLAL 138
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 38.2 bits (89), Expect = 0.002
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 21/126 (16%)
Query: 81 GKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC------AYVSQEAWITNDTLRH 134
G+ + + G GSGK+ LL + AG++ G + ++ +
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIK 85
Query: 135 NILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI------NLSGGQKQRVAL 188
L E R++ A ++D + + +G G LS GQ++RVAL
Sbjct: 86 TTL--SVLENLRFW-----HADHSDEQVEEALAR--VGLNGFEDRPVAQLSAGQQRRVAL 136
Query: 189 ARALYS 194
AR L S
Sbjct: 137 ARLLLS 142
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 38.6 bits (90), Expect = 0.002
Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 34/147 (23%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-------------SREG 116
A+ ++F +G+ + I G GSGKS L + + T+G++ R
Sbjct: 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSK 87
Query: 117 TCAYVSQEA-----------WITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPG 165
+ Q+ I + LR N ++ ++TL L LP
Sbjct: 88 RIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LP- 140
Query: 166 GDQTEIGERGINLSGGQKQRVALARAL 192
D L+ GQKQRVALARAL
Sbjct: 141 -DHANYYPH--MLAPGQKQRVALARAL 164
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 38.6 bits (90), Expect = 0.002
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 46/153 (30%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE------GTCAYVSQ 123
A+ ++F +G+ + I G GSGKS L + + T+G+L + G +Y SQ
Sbjct: 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQ 87
Query: 124 EAWITNDTLRHNILFGEP---FEP-QRYYKTL-YNCALNTDIHILPGGDQTEIGERGIN- 177
R ++F +P P QR + L + LNTD+ + E E+ I
Sbjct: 88 ---------RIRMIFQDPSTSLNPRQRISQILDFPLRLNTDL-------EPEQREKQIIE 131
Query: 178 ------------------LSGGQKQRVALARAL 192
L+ GQKQR+ LARAL
Sbjct: 132 TLRQVGLLPDHASYYPHMLAPGQKQRLGLARAL 164
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 38.6 bits (90), Expect = 0.002
Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 25/139 (17%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
AL D++ G+LV + G G GK+ LL I + + G + G I
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRR--------IE 70
Query: 129 NDTLRHNILFGEP-FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN---------- 177
++F P + N A + + + EI + +
Sbjct: 71 GPGAERGVVFQNEALLPWL--NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHK 128
Query: 178 ----LSGGQKQRVALARAL 192
LSGG +QRV +ARAL
Sbjct: 129 YIWQLSGGMRQRVGIARAL 147
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 38.6 bits (91), Expect = 0.002
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK 111
D++ G++V I G G+GKS LL A+ +L +G+
Sbjct: 20 DVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGE 58
Score = 37.1 bits (87), Expect = 0.006
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 178 LSGGQKQRVALARAL 192
LSGG++QRV LAR L
Sbjct: 135 LSGGEQQRVQLARVL 149
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS 113
A+ DI+F PKG++VG GA G+GKS L + L T+GK+
Sbjct: 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116
A+ +I+F P G++ G+ G G+GK+ IL L T G+++ G
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG 63
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 38.6 bits (90), Expect = 0.002
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 39/145 (26%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL +INF AP+ + + G G+GKS L L+ T+G + G IT
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP--------ITK 70
Query: 130 DTLRH-----NILFGEPFEPQRYYKTLYNCALNTDIHILP---GGDQTEIGER------- 174
+ +R ++F P + Q + T + DI P G D+ + R
Sbjct: 71 ENIREVRKFVGLVFQNP-DDQIFSPT-----VEQDIAFGPINLGLDEETVAHRVSSALHM 124
Query: 175 -GI---------NLSGGQKQRVALA 189
G+ +LSGG+K+RVA+A
Sbjct: 125 LGLEELRDRVPHHLSGGEKKRVAIA 149
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 38.2 bits (89), Expect = 0.002
Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA--------YVS 122
L +I+ +G++V I G GSGKS LL I T+G L +G +
Sbjct: 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIR 76
Query: 123 QEAWIT--------NDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
QEA + + T N++FG P R A +L + + ER
Sbjct: 77 QEAGMVFQQFYLFPHLTALENVMFG----PLRVRGASKEEAEKQARELL---AKVGLAER 129
Query: 175 G----INLSGGQKQRVALARAL 192
LSGGQ+QRVA+ARAL
Sbjct: 130 AHHYPSELSGGQQQRVAIARAL 151
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 38.5 bits (89), Expect = 0.002
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 33/185 (17%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW-- 126
+A+ D + K ++ G G G GKS +L + L+++ EG ++ Q+ +
Sbjct: 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRS-LNRMNDLVKGFRFEGHVHFLGQDVYGK 80
Query: 127 -ITNDTLRHNILFGEPF-EPQRYYKTLY-NCALNTDIHILPG--GDQTEIGER------- 174
+ +R I G F +P + +++ N A ++ G GD+ + +
Sbjct: 81 GVDPVVVRRYI--GMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDE 138
Query: 175 --------GINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILL--MEEVN 224
G++LSGGQ+QR+ +ARA+ + L+L PC +L I +EE+
Sbjct: 139 VKDKLKVSGLSLSGGQQQRLCIARAIATEP------EVLLLDEPCSALDPIATRRVEELM 192
Query: 225 VYVSK 229
V + K
Sbjct: 193 VELKK 197
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 38.7 bits (90), Expect = 0.002
Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 36/152 (23%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL---------------- 112
+ D + KG++ I G GSGKS + + + TAG++
Sbjct: 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELR 66
Query: 113 -SREGTCAYVSQE-AWITNDTLRHNILFG-------EPFEPQRYYKTLYNCALNTDIHIL 163
R V Q+ A + T+ N G E ++ + L L H
Sbjct: 67 EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY 126
Query: 164 PGGDQTEIGERGINLSGGQKQRVALARALYSN 195
P D+ LSGG +QRV LARAL +
Sbjct: 127 P--DE---------LSGGMQQRVGLARALAAE 147
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 38.3 bits (89), Expect = 0.003
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 61 KAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAY 120
+++D E + AL +I+F P+G++VGI G GSGKS L I G + +G+ A
Sbjct: 30 RSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL 89
Query: 121 VS 122
++
Sbjct: 90 IA 91
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 38.0 bits (89), Expect = 0.003
Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 45/169 (26%)
Query: 60 LKAEDVERN----IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS-- 113
L + + D++F G+++GI G GSGK+ LL A+ ++L AG++
Sbjct: 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYR 66
Query: 114 -REGTC-------------------AYVSQEAWITNDTLRH------NILFGEPFEP--Q 145
R+G +V Q D LR NI GE
Sbjct: 67 MRDGQLRDLYALSEAERRRLLRTEWGFVHQHP---RDGLRMQVSAGGNI--GERLMAVGA 121
Query: 146 RYYKTLYNCALN--TDIHILPGGDQTEIGERGINLSGGQKQRVALARAL 192
R+Y + A + + I D I + SGG +QR+ +AR L
Sbjct: 122 RHYGDIRATAGDWLERVEI----DAARIDDLPTTFSGGMQQRLQIARNL 166
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 37.8 bits (89), Expect = 0.003
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 60 LKAEDVERN----IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L+ + + +AL D++F G++ G+ G G+GK+ L I LR T+G + +
Sbjct: 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD 60
Query: 116 GT 117
G
Sbjct: 61 GE 62
Score = 31.6 bits (73), Expect = 0.29
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 177 NLSGGQKQRVALARAL 192
LS GQ++R+ +ARAL
Sbjct: 143 ELSYGQQRRLEIARAL 158
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 37.9 bits (88), Expect = 0.003
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 26/167 (15%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL +++ +G++V + GA G+GK+ LL + R+T+G++ +G Q A I
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 130 D---------------TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
+ T+ N+ G F + + + + P + I +R
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAE----RDQFQERIKWVYELFPRLHERRI-QR 134
Query: 175 GINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLME 221
+SGG++Q +A+ RAL S L+L P + L I++ +
Sbjct: 135 AGTMSGGEQQMLAIGRALMSQP------RLLLLDEPSLGLAPIIIQQ 175
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 38.0 bits (89), Expect = 0.003
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 42/151 (27%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
A+ D+N +G+ + + G GSGK+ L I + T+G++ +G +S +
Sbjct: 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGE--DISD---LD 69
Query: 129 NDTLRHNI--------LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER------ 174
LR I LF P N A + L G D+ I +R
Sbjct: 70 PVELRRKIGYVIQQIGLF-----PHLTVAE--NIAT---VPKLLGWDKERIKKRADELLD 119
Query: 175 --GIN-----------LSGGQKQRVALARAL 192
G++ LSGGQ+QRV +ARAL
Sbjct: 120 LVGLDPSEYADRYPHELSGGQQQRVGVARAL 150
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 37.9 bits (88), Expect = 0.003
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116
AL DI+ A +G ++G+ G GSGKS L I L T GK+ R G
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG 85
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 37.9 bits (88), Expect = 0.004
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 22/122 (18%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------CAYVSQE-AWITNDTLR 133
+ G G GK+ LL + + +G + +G V Q A + T+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 134 HNILFGEPF--EPQRYYKTLYNCALNTDIHILPGGDQTEIGERG-INLSGGQKQRVALAR 190
N+ FG P+ K AL + + E +R LSGGQ+QRVALAR
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRL-VQL------EEFADRKPHQLSGGQQQRVALAR 113
Query: 191 AL 192
AL
Sbjct: 114 AL 115
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 37.6 bits (87), Expect = 0.004
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 35/154 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST-----AGKLSREGTCAYVSQE 124
AL +IN P+ ++ I G G GKS + + ++ G+++ G+ +
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 125 AWITNDTLRHNI--LF--GEPFEPQRYYKTLYNCALNTDIHILPGGDQ-TEIGER----- 174
+ LR NI +F G PF PQ + N A IH + EI E+
Sbjct: 87 DLVE---LRKNIGMVFQKGNPF-PQSIFD---NVAYGPRIHGTKNKKKLQEIVEKSLKDV 139
Query: 175 -------------GINLSGGQKQRVALARALYSN 195
++LSGGQ+QR+ +ARAL +N
Sbjct: 140 ALWDEVKDRLHTQALSLSGGQQQRLCIARALATN 173
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 37.7 bits (87), Expect = 0.004
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 25/146 (17%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW-- 126
+ALVD++ P K++ G G GKS LL +++ EG Y + +
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRC-FNRMNDLIPGAKVEGRLLYRDRNIYDS 92
Query: 127 -ITNDTLRHNILFGEPFE-PQRYYKTLY-NCALNTDIHILPGG----------------- 166
I + LR + G F+ P + K++Y N A + G
Sbjct: 93 QINSVKLRRQV--GMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEE 150
Query: 167 DQTEIGERGINLSGGQKQRVALARAL 192
+ ++ E+G LSGGQ+QR+ +ARA+
Sbjct: 151 VKDKLKEKGTALSGGQQQRLCIARAI 176
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 37.3 bits (87), Expect = 0.005
Identities = 52/175 (29%), Positives = 67/175 (38%), Gaps = 65/175 (37%)
Query: 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG---TCAY-----VS---Q 123
+ +G+ V I G G+GKS LL I L +G L+ G T VS Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 124 EAWITND-----TLRHNILFGEPFEP-------QRYYKTLYNCA----LNTDIHILPGGD 167
E N+ T+ NI G P QR + L+ A + + LPG
Sbjct: 79 E----NNLFSHLTVAQNIGLG--LNPGLKLNAAQR--EKLHAIARQMGIEDLLARLPG-- 128
Query: 168 QTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEE 222
LSGGQ+QRVALAR L V Q ILL++E
Sbjct: 129 ---------QLSGGQRQRVALARCL-------------------VREQPILLLDE 155
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 37.6 bits (88), Expect = 0.005
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 177 NLSGGQKQRVALARAL 192
LSGGQ+QRVA+ARA+
Sbjct: 144 QLSGGQQQRVAIARAV 159
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 37.7 bits (88), Expect = 0.006
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 49/149 (32%)
Query: 81 GKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----------------CAYVSQ- 123
G+L+ + G+ G+GK+ L+ L+ RS G + G+ AYV Q
Sbjct: 51 GELLAVMGSSGAGKTTLM-NALAF-RSPKG-VKGSGSVLLNGMPIDAKEMRAISAYVQQD 107
Query: 124 EAWITNDTLRHNILFGEPFE-PQRYYKT--------------LYNCALNTDIHILPGGDQ 168
+ +I T+R +++F P+R K L CA
Sbjct: 108 DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCA------------N 155
Query: 169 TEIGERGI--NLSGGQKQRVALARALYSN 195
T IG G LSGG+++R+A A L ++
Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTD 184
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 36.2 bits (83), Expect = 0.006
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 38/116 (32%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
G+++ I G GSGK+ L A+ +L G Y+ E + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGG------VIYIDGEDILEEVLDQLL---- 50
Query: 140 EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
+G + + SG + R+ALA A
Sbjct: 51 ----------------------------LIIVGGKKASGSGELRLRLALALARKLK 78
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 36.9 bits (86), Expect = 0.006
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 32/142 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS-TAGKLSREG------------ 116
L D++ PKG + I G G+GKS LL +++S+L +G+++ +G
Sbjct: 16 VLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLKKDSGEITIDGLELTSTPSKELA 74
Query: 117 -TCAYVSQEAWI-TNDTLRHNILFGE-PFEPQRYYKTLYNCALNTDIHILPGG-----DQ 168
+ + QE I + T+R + FG P+ R L + +
Sbjct: 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGR---------LTKEDRRIINEAIEYLHL 125
Query: 169 TEIGERGIN-LSGGQKQRVALA 189
++ +R ++ LSGGQ+QR +A
Sbjct: 126 EDLSDRYLDELSGGQRQRAFIA 147
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 36.5 bits (85), Expect = 0.006
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 60 LKAEDVE----RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112
L+ E+V R AL DI+F KG++ G+ G G+GK+ + IL + +G++
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 37.2 bits (87), Expect = 0.007
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 176 INLSGGQKQRVALARALYS 194
+LSGG+KQRVA+ RAL +
Sbjct: 127 GSLSGGEKQRVAIGRALLT 145
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 36.4 bits (84), Expect = 0.008
Identities = 39/132 (29%), Positives = 53/132 (40%), Gaps = 30/132 (22%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKL-----SREGTCAY---VS---QE-AWI 127
G++V I G G+GKS LL I + +G + S G Y VS QE
Sbjct: 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLF 82
Query: 128 TNDTLRHNILFG-------EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSG 180
+ T+R NI G + ++ + + LP LSG
Sbjct: 83 AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSG 131
Query: 181 GQKQRVALARAL 192
GQ+QRVALAR L
Sbjct: 132 GQRQRVALARCL 143
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 36.6 bits (85), Expect = 0.010
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 178 LSGGQKQRVALARAL 192
+SGGQ+QRVALARAL
Sbjct: 137 ISGGQQQRVALARAL 151
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 36.1 bits (84), Expect = 0.011
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITND 130
L D + G++V + G GSG S LL A+ ++ T G +S EG Y +
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR---TEGNVSVEGDIHYNGIPYKEFAE 79
Query: 131 TLRHNILFGEPFEPQRYYKTL-------YNCALNTDIHILPGGDQTEIGERGINLSGGQK 183
I++ E ++ TL + + + RGI SGG++
Sbjct: 80 KYPGEIIYVS--EEDVHFPTLTVRETLDFALRCKGNEFV-----------RGI--SGGER 124
Query: 184 QRVALARALYSNS 196
+RV++A AL S +
Sbjct: 125 KRVSIAEALVSRA 137
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 36.2 bits (84), Expect = 0.011
Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 48/171 (28%)
Query: 60 LKAEDVERNIA----LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L+ ED+ + L ++ A G ++ I G+ GSGKS L I + +AG +
Sbjct: 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR-- 64
Query: 116 GTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYK------------------TLYNCALN 157
V+ E I + L +P + ++ + T+ +
Sbjct: 65 -----VNGEE-IRLKRDKDGQL--KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIE 116
Query: 158 TDIHIL--PGGDQTEIGER-----GI---------NLSGGQKQRVALARAL 192
+H+L + E E+ GI +LSGGQ+QRVA+ARAL
Sbjct: 117 APVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL 167
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 35.6 bits (83), Expect = 0.013
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102
L + I L +N KG++ + G GSGKS L I+
Sbjct: 5 DLHVSVGGKEI-LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM 47
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 36.1 bits (84), Expect = 0.013
Identities = 33/157 (21%), Positives = 47/157 (29%), Gaps = 60/157 (38%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTL 132
D++ P GK+ + G G GKS LL L +G + +
Sbjct: 20 DLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGD------KPIS------ 67
Query: 133 RHNILFGEPFEPQRYYKTLYNCALNTDIHILPGG-------------------------- 166
++ + L AL H+ P G
Sbjct: 68 --------MLSSRQLARRL---ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN 116
Query: 167 -------DQTEIGE----RGINLSGGQKQRVALARAL 192
+QT I R +LSGGQ+QR LA L
Sbjct: 117 ARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVL 153
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 36.0 bits (83), Expect = 0.013
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 36/147 (24%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG------------------ 110
L +I+F +G V + G GSGKS L+ + L+ ++G
Sbjct: 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80
Query: 111 -KLSREGTCAYVSQEAWITNDTLRHNILFG-------EPFEPQRYYKTLYNCALNTDIHI 162
KL ++ + + EA + +T+ ++ FG E ++ K L L+ D+
Sbjct: 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL-- 138
Query: 163 LPGGDQTEIGERGINLSGGQKQRVALA 189
I + LSGGQ +RVA+A
Sbjct: 139 --------ISKSPFELSGGQMRRVAIA 157
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 36.2 bits (83), Expect = 0.014
Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 33/166 (19%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW---ITNDTLRHNI 136
+ K+ I G G GKS + L+++ G + EG + Q + I + LR I
Sbjct: 32 RNKVTAIIGPSGCGKSTFI-KTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQI 90
Query: 137 LFGEPFE-PQRYYKTLY-NCALNTDIHI-LPGGDQTEIGERGIN---------------- 177
G F+ P + ++Y N A I LP D EI E +
Sbjct: 91 --GMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSA 148
Query: 178 --LSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLME 221
LSGGQ+QR+ +ARAL L++ PC +L I M+
Sbjct: 149 LGLSGGQQQRLCIARALAIKP------KVLLMDEPCSALDPIATMK 188
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 36.0 bits (83), Expect = 0.014
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QRVA+ARAL
Sbjct: 147 LSGGQQQRVAIARAL 161
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 36.1 bits (83), Expect = 0.014
Identities = 42/145 (28%), Positives = 54/145 (37%), Gaps = 32/145 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--TC--------- 118
AL +IN KG+ +GI G GSGKS L + LR GK+ G T
Sbjct: 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIR 76
Query: 119 -----AYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIG- 172
+ + E T+ ++ FG P+ C +I EIG
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFG----PENL------CLPPIEIRKRVDRALAEIGL 126
Query: 173 -----ERGINLSGGQKQRVALARAL 192
LSGGQ Q VALA L
Sbjct: 127 EKYRHRSPKTLSGGQGQCVALAGIL 151
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 35.9 bits (83), Expect = 0.015
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 35/151 (23%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAI-----LSQLRSTAGKLSREGTCAYVSQE 124
AL DI+ + ++ + G G GKS L + L G++ +G Y
Sbjct: 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH- 79
Query: 125 AWITNDTLRHNILFGEPFE-PQRYYKTLY-NCALNTDIHILPGGDQTEIGER-------- 174
+ LR + G F+ P + K+++ N A ++ + D+ + ER
Sbjct: 80 --VDVVELRRRV--GMVFQKPNPFPKSIFENVAYGLRVNGV--KDKAYLAERVERSLRHA 133
Query: 175 -------------GINLSGGQKQRVALARAL 192
+ LSGGQ+QR+ +ARAL
Sbjct: 134 ALWDEVKDRLHESALGLSGGQQQRLCIARAL 164
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 35.8 bits (83), Expect = 0.015
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 39/140 (27%)
Query: 81 GKLVGICGAVGSGKSALLYAILSQLRSTAG----------KLSREGTCAY------VSQE 124
G+ V + G G GKS L ++ + G KL+R A+ V Q+
Sbjct: 38 GETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQD 97
Query: 125 A-----------WITNDTLRHNILFGEPFEPQRYYKTLYNCALN-TDIHILPGGDQTEIG 172
+ I + LRH + + R + L L+ + + P
Sbjct: 98 SISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPP------- 150
Query: 173 ERGINLSGGQKQRVALARAL 192
LSGGQ QRV LARAL
Sbjct: 151 ----QLSGGQLQRVCLARAL 166
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 36.0 bits (84), Expect = 0.016
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QRVA+ RA+
Sbjct: 135 LSGGQRQRVAMGRAI 149
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 35.5 bits (82), Expect = 0.017
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QRVA+ARAL
Sbjct: 145 LSGGQQQRVAIARAL 159
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 35.7 bits (83), Expect = 0.020
Identities = 11/14 (78%), Positives = 14/14 (100%)
Query: 179 SGGQKQRVALARAL 192
SGGQ+QR+A+ARAL
Sbjct: 156 SGGQRQRIAIARAL 169
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 36.0 bits (84), Expect = 0.020
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 39 SKRKKYA-AKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSAL 97
S +K K + NG L+ + RN L +I+ P G + G GSGKS L
Sbjct: 588 SGKKTIEVPKKRRAPNG---KWLELKGARRN-NLKNIDVEIPLGVFTCVTGVSGSGKSTL 643
Query: 98 LYAIL 102
+ L
Sbjct: 644 INDTL 648
Score = 32.2 bits (74), Expect = 0.34
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSAL----LYA 100
E N+ +D+ P+ KLV I G GSGKS+L +YA
Sbjct: 13 EHNLKNIDLEI--PRNKLVVITGLSGSGKSSLAFDTIYA 49
Score = 29.9 bits (68), Expect = 1.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 178 LSGGQKQRVALARALYSN 195
LSGG+ QR+ LA + S
Sbjct: 482 LSGGEAQRIRLATQIGSG 499
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 35.1 bits (81), Expect = 0.021
Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
A+ +I+ PK + G+ G G+GKS LL I LR T+G++ +G W
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-------HPWTRK 67
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIH-ILPGGDQTEIGE-------------RG 175
D H I G E Y+ L N +H L G + I E +
Sbjct: 68 DL--HKI--GSLIESPPLYENL-TARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA 122
Query: 176 INLSGGQKQRVALARAL 192
S G KQR+ +A AL
Sbjct: 123 KQFSLGMKQRLGIAIAL 139
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 35.3 bits (82), Expect = 0.022
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA 119
E N+ +D++ P G L + G GSGKS+L+ L + A +L +
Sbjct: 8 ENNLKNIDVDI--PLGVLTCVTGVSGSGKSSLINDTL--YPALARRLHLKKEQP 57
Score = 27.2 bits (61), Expect = 8.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 171 IGERGINLSGGQKQRVALARAL 192
+G+ LSGG+ QR+ LA+ L
Sbjct: 163 LGQPATTLSGGEAQRIKLAKEL 184
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 35.9 bits (84), Expect = 0.023
Identities = 44/137 (32%), Positives = 59/137 (43%), Gaps = 35/137 (25%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC--AYVSQEAWITND 130
D++F P G +VGI G G+GKS L I Q + +G + T AYV Q + D
Sbjct: 342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQ----SRD 397
Query: 131 TLRHN-------------ILFGEPFE-PQRYYKTLYNCALNTDIHILPGGDQTE-IGERG 175
L N I G E P R Y +N GGDQ + +G
Sbjct: 398 ALDPNKTVWEEISGGLDIIKVGN-REIPSRAYVGRFN---------FKGGDQQKKVG--- 444
Query: 176 INLSGGQKQRVALARAL 192
LSGG++ R+ LA+ L
Sbjct: 445 -VLSGGERNRLHLAKTL 460
Score = 31.2 bits (72), Expect = 0.54
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 177 NLSGGQKQRVALARALYS 194
LSGG+++RVAL R L
Sbjct: 163 KLSGGERRRVALCRLLLE 180
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 35.1 bits (81), Expect = 0.023
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 33/150 (22%)
Query: 70 ALVDINF-FAPKGKLVGICGAVGSGKSALLYAI-----LSQLRSTAGKLSREGTCAYVSQ 123
AL ++ F P + + G GSGKS LL +I L+ + G + G Y
Sbjct: 20 ALNSVSLDFYPNE-ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP- 77
Query: 124 EAWITNDT--LRHNI--LFGEP--FEPQRYYKTLYNCALN--TDIHILPGGDQT------ 169
DT LR I +F +P F Y +Y L D +L +
Sbjct: 78 ----RTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGAS 133
Query: 170 ---EIGER----GINLSGGQKQRVALARAL 192
E+ +R + LSGGQ+QRV +AR L
Sbjct: 134 IWDEVKDRLHDSALGLSGGQQQRVCIARVL 163
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 35.7 bits (83), Expect = 0.023
Identities = 38/152 (25%), Positives = 54/152 (35%), Gaps = 45/152 (29%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS-------------------- 113
I+F G++VG+ G VG+G+S L+ + R TAG++
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331
Query: 114 -------REGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHI---- 162
EG S I RH++ G + A N D I
Sbjct: 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-------AENADRFIRSLN 384
Query: 163 --LPGGDQTEIGERGINLSGGQKQRVALARAL 192
P +Q I NLSGG +Q+ L R L
Sbjct: 385 IKTPSREQ-LIM----NLSGGNQQKAILGRWL 411
Score = 31.4 bits (72), Expect = 0.55
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 34/150 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-RSTAGKLSREGT----------- 117
AL DI+F G++ + G G+GKS LL ILS + AG + +G
Sbjct: 19 ALDDISFDCRAGQVHALMGENGAGKSTLL-KILSGNYQPDAGSILIDGQEMRFASTTAAL 77
Query: 118 ---CAYVSQEAWITND-TLRHNILFGEPFEPQRY----YKTLYNCAL----NTDIHILPG 165
A + QE + + T+ N+ G+ P + + L A + + I P
Sbjct: 78 AAGVAIIYQELHLVPEMTVAENLYLGQ--LPHKGGIVNRRLLNYEAREQLEHLGVDIDP- 134
Query: 166 GDQTEIGERGINLSGGQKQRVALARALYSN 195
T + LS GQ+Q V +A+AL N
Sbjct: 135 --DTPLKY----LSIGQRQMVEIAKALARN 158
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 35.7 bits (82), Expect = 0.023
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116
F G + ICG G+GK+ LL AI L GKL R
Sbjct: 17 THTIDFTALGPIFLICGKTGAGKTTLLDAITYALY---GKLPRRS 58
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 35.2 bits (81), Expect = 0.025
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 37/149 (24%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG----------KLSREGTCAY 120
L +++ +G+ VG+ G G GKS L +L + G +L R+ A+
Sbjct: 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAF 86
Query: 121 ------VSQEA-----------WITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHIL 163
V Q++ I + LRH E + R + L L ++
Sbjct: 87 RRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED--- 143
Query: 164 PGGDQTEIGERGINLSGGQKQRVALARAL 192
+ LSGGQ QR+ +ARAL
Sbjct: 144 -------ADKLPRQLSGGQLQRINIARAL 165
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 35.5 bits (82), Expect = 0.026
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 67/170 (39%)
Query: 65 VERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124
V+ N+ + +I+F G+ +G+ G GSGKS A+L + S +G E
Sbjct: 296 VDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-------QG-------E 341
Query: 125 AWITNDTL-----------RHNI--LFGEPFEPQRYYKTLYNCALNTDIHIL-------- 163
W L RH I +F +P N +LN +++L
Sbjct: 342 IWFDGQPLHNLNRRQLLPVRHRIQVVFQDP-----------NSSLNPRLNVLQIIEEGLR 390
Query: 164 ---PGGDQTEIGERGI------------------NLSGGQKQRVALARAL 192
P + ++ I SGGQ+QR+A+ARAL
Sbjct: 391 VHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARAL 440
Score = 27.7 bits (62), Expect = 8.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 178 LSGGQKQRVALARAL 192
LSGG++QRV +A AL
Sbjct: 157 LSGGERQRVMIAMAL 171
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 35.0 bits (80), Expect = 0.027
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 23/144 (15%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW-ITN 129
L DI P + GI G GSGKS LL + + K+ +G Y ++ + I
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85
Query: 130 DTLRHNI--LFGEPFEPQRYYKTLYNCALNTDIH---------------ILPGGDQTEIG 172
LR + +F +P P + N A H + G E+
Sbjct: 86 IKLRKEVGMVFQQP-NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 173 ER----GINLSGGQKQRVALARAL 192
+R LSGGQ+QR+ +ARAL
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARAL 168
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 35.0 bits (80), Expect = 0.028
Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 49/200 (24%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW 126
++ L +IN P+ ++ I G G GKS LL A L+++ EG ++ +
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRA-LNRMNDIVSGARLEGAVLLDNENIY 74
Query: 127 -----ITNDTLRHNILFGEP------------FEPQRY------------YKTLYNCALN 157
+ N R ++F +P F P+ K+L AL
Sbjct: 75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALW 134
Query: 158 TDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI 217
++ + + + G+ LSGGQ+QR+ +AR L + E + +++ PC +L +
Sbjct: 135 DEV-------KDNLHKSGLALSGGQQQRLCIARVL---AIEPEV---ILMDEPCSALDPV 181
Query: 218 L------LMEEVNVYVSKPI 231
LM+E+ + I
Sbjct: 182 STMRIEELMQELKQNYTIAI 201
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 35.2 bits (81), Expect = 0.031
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 29/184 (15%)
Query: 31 LDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAV 90
+ K GS K+ + S+ ER I L + A G+++ + G
Sbjct: 51 FENMKNKGSNIKRILGHKPKISDETRQIQ------ERTI-LNGVTGMASPGEILAVLGPS 103
Query: 91 GSGKSALLYAILSQLRST--AGKL---SREGTCAYVSQEAWITND-------TLRHNILF 138
GSGKS LL A+ +++ G + +R+ T + + ++T D T+R ++F
Sbjct: 104 GSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVF 163
Query: 139 GE----PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGE---RGINLSGGQKQRVALARA 191
P + K L ++ +++ L + T IG RGI SGG+++RV++A
Sbjct: 164 CSLLRLPKSLTKQEKILVAESVISELG-LTKCENTIIGNSFIRGI--SGGERKRVSIAHE 220
Query: 192 LYSN 195
+ N
Sbjct: 221 MLIN 224
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 34.9 bits (81), Expect = 0.033
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 60 LKAEDVERN----IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L+ + + A+ D++ G++VG+ G G+GK+ L I + ++G +
Sbjct: 5 LEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFR 64
Query: 116 GT 117
G
Sbjct: 65 GR 66
Score = 28.3 bits (64), Expect = 4.4
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 177 NLSGGQKQRVALARAL 192
NLS GQ++R+ +ARAL
Sbjct: 149 NLSYGQQRRLEIARAL 164
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 34.6 bits (80), Expect = 0.036
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS 113
AL D+N P G V I G GSGKS LL + L+ T+G ++
Sbjct: 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT 65
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 34.9 bits (81), Expect = 0.036
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 40/151 (26%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILS-----------------QLRSTAGKL 112
AL +++ G++V +CG G+GKS L+ +LS +L+++ +
Sbjct: 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLM-KVLSGVYPHGTYEGEIIFEGEELQASNIRD 78
Query: 113 SREGTCAYVSQE-AWITNDTLRHNILFGEPFEP----------QRYYKTLYNCALNTDIH 161
+ A + QE A + ++ NI G P R K L L+ +
Sbjct: 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA 138
Query: 162 ILPGGDQTEIGERGINLSGGQKQRVALARAL 192
T +G NL GQ+Q V +A+AL
Sbjct: 139 -------TPVG----NLGLGQQQLVEIAKAL 158
Score = 31.8 bits (73), Expect = 0.44
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 56 ESTHLKAEDVE-RNIALVD-INFFAPKGKLVGICGAVGSGKSALLYAI 101
E +L A D +I VD ++F +G+++GI G VG+G++ L+ +
Sbjct: 261 EVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCL 308
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 34.4 bits (79), Expect = 0.045
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 31/139 (22%)
Query: 79 PKGKLVGICGAVGSGKSALLYAI-----LSQLRSTAGKLSREGTCAYVSQEAWITNDTLR 133
P+GK+ + G G GKS +L ++ L + S G++ +GT Y + + +R
Sbjct: 37 PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR---VDPVEVR 93
Query: 134 HNILFGEPFE-PQRYYKTLY-NCALNTDIHILPGGDQTEIGER----------------- 174
I G F+ P + K++Y N A I+ GD E+ ER
Sbjct: 94 RRI--GMVFQQPNPFPKSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNE 150
Query: 175 -GINLSGGQKQRVALARAL 192
G +LSGGQ+QR+ +AR +
Sbjct: 151 SGYSLSGGQQQRLCIARTI 169
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 34.4 bits (79), Expect = 0.045
Identities = 42/154 (27%), Positives = 58/154 (37%), Gaps = 41/154 (26%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYA------ILSQLRSTAGKLSRE----GTCA 119
AL DI PK ++ + G G GKS LL ++ R T L + A
Sbjct: 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80
Query: 120 YVSQEAWITNDTLRHNILFGEPFE-PQRYYKTLY-NCALNTDIH-ILPGGDQTEIGER-- 174
V LR I G F+ P + K++Y N A IH I E+
Sbjct: 81 DVVA--------LRRKI--GMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSL 130
Query: 175 ----------------GINLSGGQKQRVALARAL 192
++LSGGQ+QR+ +AR L
Sbjct: 131 KGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 34.4 bits (79), Expect = 0.047
Identities = 38/150 (25%), Positives = 56/150 (37%), Gaps = 37/150 (24%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL---SREGTC----------- 118
D++F G+++GI G GSGKS LL + +L G R G
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80
Query: 119 --------AYVSQEAWITNDTLRHNILFGEPFEP------QRYYKTLYNCALN--TDIHI 162
+V Q D LR + G R+Y + A + ++ I
Sbjct: 81 RRLMRTEWGFVHQNP---RDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 163 LPGGDQTEIGERGINLSGGQKQRVALARAL 192
D T I + SGG +QR+ +AR L
Sbjct: 138 ----DPTRIDDLPRAFSGGMQQRLQIARNL 163
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 34.3 bits (79), Expect = 0.054
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 29/143 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL ++ P+G + G G+GKS LL + G++ G E W+ +
Sbjct: 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRS 79
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILP---GGDQTEIGERG----------- 175
+ ++F +P + Q + T+++ D+ P G D+ E+ R
Sbjct: 80 ---KVGLVFQDP-DDQVFSSTVWD-----DVAFGPVNMGLDKDEVERRVEEALKAVRMWD 130
Query: 176 ------INLSGGQKQRVALARAL 192
+LS GQK+RVA+A L
Sbjct: 131 FRDKPPYHLSYGQKKRVAIAGVL 153
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 34.0 bits (79), Expect = 0.054
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 32/129 (24%)
Query: 81 GKLVGICGAVGSGKSALLYAILSQL-RSTAGKLSREGTC------AYVSQEAWI-----T 128
G+LV I G G+GK++LL IL+ L R AG++ +G Y ++
Sbjct: 27 GELVQIEGPNGAGKTSLL-RILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGI 85
Query: 129 NDTLRHNILFGEPFEPQRYYKTLYNCALNTDIH-ILPGGDQTEIGERGI------NLSGG 181
L E R+Y+ L+ + + L ++G G LS G
Sbjct: 86 KTEL-------TALENLRFYQRLHGPGDDEALWEAL-----AQVGLAGFEDVPVRQLSAG 133
Query: 182 QKQRVALAR 190
Q++RVALAR
Sbjct: 134 QQRRVALAR 142
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 34.2 bits (79), Expect = 0.060
Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 54/179 (30%)
Query: 50 EKSNGE---ESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR 106
+K+ GE + +L V D++F KG+++G+ G +G+G++ L+ + L
Sbjct: 250 DKAPGEVRLKVDNLSGPGVN------DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP 303
Query: 107 STAGKLSREG-TCAYVS-QE------AWITNDTLRHNILFGEPFEPQ------RY----- 147
T+G ++ +G S Q+ +I+ D R ++ G + RY
Sbjct: 304 RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAG 363
Query: 148 --------------YKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL 192
+ L+N + T P +Q IG LSGG +Q+VA+AR L
Sbjct: 364 GSLKHADEQQAVSDFIRLFN--IKT-----PSMEQA-IG----LLSGGNQQKVAIARGL 410
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 33.9 bits (78), Expect = 0.062
Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 31/149 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAI-----LSQLRSTAGKLSREGTCAYVSQE 124
AL IN + ++ + G G GKS L + L G++ +G Y S
Sbjct: 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD- 76
Query: 125 AWITNDTLRHNILFGEPFE-PQRYYKTLY-NCALNTDIH-ILPGGDQTEIGER------- 174
I + LR + G F+ P + ++Y N A H I EI E+
Sbjct: 77 --IDVNQLRKRV--GMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAAL 132
Query: 175 -----------GINLSGGQKQRVALARAL 192
+ LSGGQ+QR+ +ARAL
Sbjct: 133 WDEVKDRLKKSALGLSGGQQQRLCIARAL 161
>gnl|CDD|131576 TIGR02524, dot_icm_DotB, Dot/Icm secretion system ATPase DotB.
Members of this protein family are the DotB component of
Dot/Icm secretion systems, as found in obligate
intracellular pathogens Legionella pneumophila and
Coxiella burnetii. While this system resembles type IV
secretion systems and has been called a form of type IV,
the liturature now seems to favor calling this the
Dot/Icm system. This family is most closely related to
TraJ proteins of plasmid transfer, rather than to
proteins of other type IV secretion systems.
Length = 358
Score = 34.2 bits (78), Expect = 0.063
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK----LSREGTCAYVSQE 124
I+ AP+ +V I GA GSGKS LL AI+ +L L+ E +V E
Sbjct: 127 IDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDE 181
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 33.7 bits (77), Expect = 0.064
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 30/144 (20%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL---------------SREGT 117
D++ G++VG+ G G+GK+ Y ++ + AG + +R G
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80
Query: 118 CAYVSQEAWITNDTLRHNILFG------EPFEPQRYYKTLYNCALNTDIHILPGGDQTEI 171
Y+ QEA I ++ L + QR + L + HI D
Sbjct: 81 -GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRAN---ELMEEFHIEHLRDSM-- 134
Query: 172 GERGINLSGGQKQRVALARALYSN 195
G +LSGG+++RV +ARAL +N
Sbjct: 135 ---GQSLSGGERRRVEIARALAAN 155
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 33.8 bits (78), Expect = 0.066
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT 117
AL D++F G+L + G G+GK+ L+ I + R G++ +G
Sbjct: 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGD 67
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 33.8 bits (78), Expect = 0.069
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 47/151 (31%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-RSTAGKLS------REGTCA--- 119
AL D++F G+ V + G G+GKS L +++L++L + G++S R A
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTL-FSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74
Query: 120 ---YVSQEAWITND-TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGG--------- 166
V Q+ + D ++R N+ RY+ L H L
Sbjct: 75 RLGVVFQQPTLDLDLSVRQNL---------RYHAAL---------HGLSRAEARARIAEL 116
Query: 167 -DQTEIGERGIN----LSGGQKQRVALARAL 192
+ + ER + L+GG ++RV +ARAL
Sbjct: 117 LARLGLAERADDKVRELNGGHRRRVEIARAL 147
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction
of the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange. While prokaryotes have a single RecA
protein, eukaryotes have multiple RecA homologs such as
Rad51, DMC1 and Rad55/57. Archaea have the RecA-like
homologs radA and radB.
Length = 226
Score = 33.7 bits (78), Expect = 0.070
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 79 PKGKLVGICGAVGSGKS--ALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRH 134
P G++ I G GSGK+ L A+ +QL G L EG Y+ T R
Sbjct: 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGL--EGKVVYID-----TEGAFRP 67
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 33.5 bits (77), Expect = 0.071
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAIL----SQLRSTAGKLSREG 116
+ D+N +G+++ + G GSGKS AIL L T+G++ +G
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG 51
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 34.2 bits (79), Expect = 0.072
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 75 NFFAPKGKLVG---ICGAVGSGKSALLYAILSQLR 106
NF K++G I G GSGK+ LL +L+Q++
Sbjct: 425 NFHVRDAKVLGHTLIFGPTGSGKTTLLNFLLAQMQ 459
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 33.9 bits (77), Expect = 0.073
Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 43 KYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102
KY + K E T L ++ + D + +G++ I G GSGKS ++ +
Sbjct: 23 KYIEQGLSKEQILEKTGL-------SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLN 75
Query: 103 SQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHI 162
+ T G++ +G +A + + + + F + L N A ++
Sbjct: 76 RLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG 135
Query: 163 LPGGDQTE-----IGERGIN---------LSGGQKQRVALARALYSN 195
+ ++ E + + G+ LSGG +QRV LARAL N
Sbjct: 136 INAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAIN 182
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 33.8 bits (77), Expect = 0.075
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 165 GGDQTEIGERGINLSGGQKQRVALARAL 192
G D+ G+ ++LSGGQ+QRV++ARAL
Sbjct: 140 GIDERAQGKYPVHLSGGQQQRVSIARAL 167
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 33.5 bits (76), Expect = 0.076
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 30/147 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL DIN + K+ + GA G GKS L K+++ + +
Sbjct: 17 ALFDINMQIEQNKITALIGASGCGKSTFLRC----FNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 130 D--TLRHNILFGEPFE-PQRYYKTLY-NCALNTDIH-ILPGGDQTE-------------- 170
D LR N+ G F+ P + K++Y N + +H ++ D+ E
Sbjct: 73 DVVALRKNV--GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFE 130
Query: 171 -----IGERGINLSGGQKQRVALARAL 192
+ + + LSGGQ+QR+ +ARAL
Sbjct: 131 EVKDKLKQNALALSGGQQQRLCIARAL 157
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 34.0 bits (78), Expect = 0.076
Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 25/143 (17%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL +++F A KG++VG G G+GKS + I L +G + G + +
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE---- 72
Query: 130 DTLRHNILFGEPFEPQRYYKTLY---NCALNTDIHILPGGDQTEIGERGINLSG------ 180
++ NI G E Y +Y I+ + G + E I L G
Sbjct: 73 --VQRNI--GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH 128
Query: 181 --------GQKQRVALARALYSN 195
G +QRV LA+AL +
Sbjct: 129 KKIGQLSKGYRQRVGLAQALIHD 151
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 33.8 bits (78), Expect = 0.076
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 178 LSGGQKQRVALA 189
LSGGQKQRVA+A
Sbjct: 141 LSGGQKQRVAIA 152
Score = 31.5 bits (72), Expect = 0.42
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG 110
AL D++F +G+ V I G GSGKS L + L AG
Sbjct: 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 33.4 bits (77), Expect = 0.083
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAI 101
L ++ I L +N KG++ I G GSGKS L I
Sbjct: 5 DLHVSVEDKEI-LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTI 46
>gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG. This model
represents UreG, a GTP hydrolase that acts in the
assembly of the nickel metallocenter of urease. It is
found only in urease-positive species, although some
urease-positive species (e.g. Bacillus subtilis) lack
this protein. A similar protein, hypB, is an accessory
protein for expression of hydrogenase, which also uses
nickel [Central intermediary metabolism, Nitrogen
metabolism].
Length = 199
Score = 33.3 bits (76), Expect = 0.085
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 84 VGICGAVGSGKSALLYAILSQLRS 107
+G+ G VGSGK+AL+ A+ LR
Sbjct: 4 IGVAGPVGSGKTALIEALTRALRQ 27
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 33.1 bits (76), Expect = 0.089
Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 33/140 (23%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAYV 121
++F G+ + + G G GK+ LL + LR +G++ GT Y+
Sbjct: 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYL 78
Query: 122 SQEAWITND-TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN--- 177
+ + + N+ F + AL +G G
Sbjct: 79 GHLPGLKPELSALENLHFWAAI--HGGAQRTIEDAL------------AAVGLTGFEDLP 124
Query: 178 ---LSGGQKQRVALARALYS 194
LS GQ++R+ALAR S
Sbjct: 125 AAQLSAGQQRRLALARLWLS 144
>gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 456
Score = 33.7 bits (78), Expect = 0.10
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 27 WDTL----LDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVER---NIALVDINF--- 76
W+TL L S +++ E S + + ++ E+ R I +D
Sbjct: 30 WNTLVEEVLAASPGGAPNKRRSGKAGSEPSKVLKLSDIELEEEPRISTGIEELDRVLGGG 89
Query: 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124
P G ++ I G G GKS LL + ++ L++ G YVS E
Sbjct: 90 LVP-GSVILIGGDPGIGKSTLLLQVAAR-------LAKRGKVLYVSGE 129
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 33.5 bits (77), Expect = 0.10
Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 41/170 (24%)
Query: 56 ESTHLKAEDVE----RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAI-----LSQLR 106
E T L+ ++ AL DI+ PK ++ G G GKS LL L
Sbjct: 22 EQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNC 81
Query: 107 STAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFE-PQRYYKTLY-NCALNTDIH--- 161
G++ +G Y + LR + G F+ P + K++Y N +
Sbjct: 82 RIEGEIRLDGQNIYDKKVDVAE---LRRRV--GMVFQRPNPFPKSIYENVVYGLRLQGIN 136
Query: 162 ---ILPGGDQT------------EIGER----GINLSGGQKQRVALARAL 192
+L D+ E+ +R LSGGQ+QR+ +ARA+
Sbjct: 137 NRRVL---DEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 33.2 bits (76), Expect = 0.10
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAG 110
D++F G+++GI G GSGK+ LL I +L AG
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 33.2 bits (76), Expect = 0.10
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLS 113
A+ D+N +GK I G GSGKS L+ I + L+ T G ++
Sbjct: 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT 65
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 33.8 bits (78), Expect = 0.10
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 47 KSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102
+ NG+ T A E N L +I P G I G GSGKS L+ L
Sbjct: 604 AERRPGNGKFLTLKGAR--ENN--LKNITVSIPLGLFTCITGVSGSGKSTLINDTL 655
Score = 33.1 bits (76), Expect = 0.19
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSAL----LYA 100
E N+ +D+ P+ KLV I G GSGKS+L +YA
Sbjct: 9 EHNLKNIDVEI--PRDKLVVITGLSGSGKSSLAFDTIYA 45
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 33.4 bits (76), Expect = 0.11
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 171 IGERGINLSGGQKQRVALARALYSN 195
+G+ NLSGGQ+QR+ +ARAL ++
Sbjct: 155 LGDLAFNLSGGQQQRLCIARALATD 179
>gnl|CDD|225363 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 33.5 bits (77), Expect = 0.11
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 88 GAVGSGKSALLYAILSQL 105
G GSGK+ LYA LS+L
Sbjct: 265 GPTGSGKTTTLYAALSEL 282
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 33.1 bits (75), Expect = 0.12
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 132 LRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARA 191
LR N + F QR +TL AL ++ + ++ E LSGGQ+QR+ +ARA
Sbjct: 108 LRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQRLCIARA 160
Query: 192 L 192
+
Sbjct: 161 M 161
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 33.1 bits (75), Expect = 0.12
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQ---EAWITNDTLRHNI 136
+ K+ I G G GKS L L+++ ++ EG + +Q E + + LR +
Sbjct: 32 QSKVTAIIGPSGCGKSTFLKC-LNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQV 90
Query: 137 LFGEPFEPQRYYKTLY-NCALNTDI--------------HILPGGD-----QTEIGERGI 176
P +P + ++Y N A I L D + +I + +
Sbjct: 91 SMVHP-KPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSAL 149
Query: 177 NLSGGQKQRVALARAL 192
+LSGGQ+QR+ +ARAL
Sbjct: 150 DLSGGQQQRLCIARAL 165
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 32.9 bits (75), Expect = 0.13
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 177 NLSGGQKQRVALARAL 192
NLSGGQ+QR+ +ARAL
Sbjct: 149 NLSGGQRQRLVIARAL 164
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 32.6 bits (75), Expect = 0.14
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRS 107
+G+ G GSGK+AL+ L L+
Sbjct: 14 LRIGVGGPPGSGKTALIEKTLRALKD 39
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 32.3 bits (74), Expect = 0.15
Identities = 25/133 (18%), Positives = 34/133 (25%), Gaps = 42/133 (31%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTL 132
D+ F L I G GSGKS +L AI
Sbjct: 15 DVTFGEGS--LTIITGPNGSGKSTILDAI-----------------------GLAL--GG 47
Query: 133 RHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL 192
+ + L LSGG+K+ ALA L
Sbjct: 48 AQSATRRRSGVKAGCIVAAVSAELIFTRL---------------QLSGGEKELSALALIL 92
Query: 193 YSNSFEQQTFHFL 205
S + + + L
Sbjct: 93 ALASLKPRPLYIL 105
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 32.7 bits (75), Expect = 0.15
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 39/146 (26%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL INF A KG++V + G G+GKS L L+ T+G++ +G +++ +
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLL-- 74
Query: 130 DTLRHN--ILFGEP----FEPQRYYKTLYNCALNTDIHILP---GGDQTEIGER------ 174
+R I+F P F P + D+ P G + E+ +R
Sbjct: 75 -EVRKTVGIVFQNPDDQLFAP----------TVEEDVAFGPLNLGLSKEEVEKRVKEALK 123
Query: 175 --GI---------NLSGGQKQRVALA 189
G+ +LSGGQK+RVA+A
Sbjct: 124 AVGMEGFENKPPHHLSGGQKKRVAIA 149
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 33.2 bits (76), Expect = 0.16
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 72 VDINFFAPKGKLVGICGAVGSGKSALLYAIL 102
+DI G + I G G+GKS++L AI
Sbjct: 17 IDIEKLFDSG-IFLIVGPNGAGKSSILDAIT 46
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 32.8 bits (75), Expect = 0.16
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 10/45 (22%)
Query: 175 GINLSGGQKQRVALARALYSNSFEQQTFHFLVLLC--PCVSLQSI 217
G LSGGQ+QR+ +ARA+ + E VLL PC +L I
Sbjct: 146 GGGLSGGQQQRLCIARAI---AVEPD-----VLLMDEPCSALDPI 182
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 32.9 bits (76), Expect = 0.17
Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 53/148 (35%)
Query: 80 KGKLVGICGAVGSGKSALLYAILS-QLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILF 138
+GK+ GI G G GK+ + ILS +L G E + W ++ L+
Sbjct: 98 EGKVTGILGPNGIGKTTAV-KILSGELIPNLGDYEEEPS--------W--DEVLKR---- 142
Query: 139 GEPF---EPQRYYKTLYNCALNTD-----IHILP------GGDQTE-IGERGI------- 176
F E Q Y+K LYN + + ++P + + + ERG
Sbjct: 143 ---FRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVER 199
Query: 177 ------------NLSGGQKQRVALARAL 192
LSGG+ QRVA+A AL
Sbjct: 200 LGLENILDRDISELSGGELQRVAIAAAL 227
Score = 32.5 bits (75), Expect = 0.28
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 32/125 (25%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQ----------EAWI-- 127
+G+++GI G G GK+ + L+ G++ E +Y Q E +
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRS 423
Query: 128 TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVA 187
D L + E +P + + L + + +LSGG+ QRVA
Sbjct: 424 ITDDLGSSYYKSEIIKPLQLER-LLDKNVK-------------------DLSGGELQRVA 463
Query: 188 LARAL 192
+A L
Sbjct: 464 IAACL 468
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 32.7 bits (75), Expect = 0.17
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 178 LSGGQKQRVALARALYS 194
LSGGQ+QRVA+ R L +
Sbjct: 134 LSGGQRQRVAIGRTLVA 150
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 32.4 bits (74), Expect = 0.19
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 34/151 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRST------AGKLSREGTCAYVSQ 123
AL D++ P+ + G G GKS L L+++ T GK++ +G Y +
Sbjct: 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRC-LNRMNDTIDGCRVTGKITLDGEDIYDPR 92
Query: 124 EAWITNDTLRHNILFGEPFE-PQRYYKTLY-NCALNTDIHILPGG--DQTEIGER----- 174
+ LR + G F+ P + K++Y N A IH L + EI E
Sbjct: 93 ---LDVVELRARV--GMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKA 147
Query: 175 -------------GINLSGGQKQRVALARAL 192
G LSGGQ+QR+ +ARA+
Sbjct: 148 GLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 32.3 bits (74), Expect = 0.20
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 37/152 (24%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALL------YAILSQLRSTAGKLSREGT------ 117
AL +IN K ++ G G GKS LL Y + + R+ G++ +G
Sbjct: 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAE-GEILLDGENILTPK 86
Query: 118 ---------CAYVSQEAWITNDTLRHNILFG-EPFEP-------QRYYKTLYNCALNTDI 160
V Q+ ++ NI FG FE +R L AL ++
Sbjct: 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV 146
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARAL 192
+ ++ + G +LSGGQ+QR+ +AR +
Sbjct: 147 -------KDKLHQSGYSLSGGQQQRLCIARGI 171
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 31.9 bits (73), Expect = 0.21
Identities = 28/121 (23%), Positives = 38/121 (31%), Gaps = 26/121 (21%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQ 145
I G GSGKS ++ AI L A KL R L +
Sbjct: 27 IVGPNGSGKSNIVDAICFVLGGKAAKLRR--------------GSLLFLAGGGVKAGINS 72
Query: 146 RYYK-TLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHF 204
+ T ++ G +I LSGG+K ALA + F+
Sbjct: 73 ASVEITFDK-----SYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYV 121
Query: 205 L 205
L
Sbjct: 122 L 122
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 32.0 bits (73), Expect = 0.22
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112
L +++ G+ V + G G+GKS LL ++ + +G++
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI 65
Score = 28.1 bits (63), Expect = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 179 SGGQKQRVALARAL 192
SGG++QRV +AR
Sbjct: 151 SGGEQQRVNIARGF 164
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 32.7 bits (76), Expect = 0.22
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102
E N+ VD+ P GK + G GSGKS L+ L
Sbjct: 622 ENNLKNVDVEI--PLGKFTCVTGVSGSGKSTLINETL 656
Score = 30.0 bits (69), Expect = 1.4
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 9/38 (23%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSAL----LYA 100
+NI L DI P+ KLV G GSGKS+L +YA
Sbjct: 17 KNIDL-DI----PRDKLVVFTGLSGSGKSSLAFDTIYA 49
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 32.1 bits (73), Expect = 0.22
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 18/141 (12%)
Query: 60 LKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA 119
++ DV + L ++ G+++ + G G+GKS LL + AG S G+
Sbjct: 4 MQLNDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARM-------AGMTSGSGSIQ 56
Query: 120 YVSQ--EAWITNDTLRHNILFGE----PFE-PQRYYKTLYNCALNTDIHILPGGDQTEIG 172
+ Q EAW + RH + PF P +Y TL+ + +
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALD 116
Query: 173 E---RGIN-LSGGQKQRVALA 189
+ R N LSGG+ QRV LA
Sbjct: 117 DKLGRSTNQLSGGEWQRVRLA 137
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 32.2 bits (73), Expect = 0.22
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 27/143 (18%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL + F G++ + G G+GKS LL I R +AGK+ G +++
Sbjct: 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSG--HDITRLKNREV 74
Query: 130 DTLRHNILFGEPFEPQRYY--KTLY-NCALNTDIHILPGGDQTEIGER------------ 174
LR I G F+ +T+Y N A+ I+ G +I R
Sbjct: 75 PFLRRQI--GMIFQDHHLLMDRTVYDNVAIPL---IIAGASGDDIRRRVSAALDKVGLLD 129
Query: 175 -----GINLSGGQKQRVALARAL 192
I LSGG++QRV +ARA+
Sbjct: 130 KAKNFPIQLSGGEQQRVGIARAV 152
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 32.1 bits (73), Expect = 0.23
Identities = 12/14 (85%), Positives = 14/14 (100%)
Query: 178 LSGGQKQRVALARA 191
LSGG++QRVALARA
Sbjct: 147 LSGGEQQRVALARA 160
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 32.5 bits (75), Expect = 0.24
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 36/153 (23%)
Query: 69 IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
+A D++ KG++ + G G+GKS L+ + + +G++ +G
Sbjct: 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGK----EVRIKSP 73
Query: 129 NDTLRHNI--------LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQT-------EIGE 173
D +R I L P N L + D+ E+ E
Sbjct: 74 RDAIRLGIGMVHQHFMLV-----PT--LTVAENIILGLEPSKGGLIDRRQARARIKELSE 126
Query: 174 R-GIN---------LSGGQKQRVALARALYSNS 196
R G+ LS G++QRV + +ALY +
Sbjct: 127 RYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159
Score = 30.6 bits (70), Expect = 0.89
Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 31/161 (19%)
Query: 59 HLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT- 117
L +D A+ D++F G++VGI G G+G+S L+ AI + +G++ G
Sbjct: 262 DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD 321
Query: 118 --------------CAYV----SQEAWITNDTLRHNILFGEPFEPQRYYKTLYNC----A 155
AYV + + +L N++ G + +
Sbjct: 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK 381
Query: 156 LNTDI----HILPGGDQTEIGERGINLSGGQKQRVALARAL 192
++ + +LSGG +Q++ LAR L
Sbjct: 382 FARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILAREL 418
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 32.2 bits (73), Expect = 0.26
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 27/144 (18%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITND-- 130
++ K ++ I G G GK+ LL +I +++ EG + Q+ +
Sbjct: 21 NVTMKIFKNQITAIIGPSGCGKTTLLRSI-NRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79
Query: 131 -TLRHNILFGEPFE-PQRYYKTLY-NCALNTDIHILPGGD-------------------Q 168
R + G F+ P + ++Y N A IH + +
Sbjct: 80 TEYRKKV--GMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK 137
Query: 169 TEIGERGINLSGGQKQRVALARAL 192
+E+ + G LSGGQ+QR+ +ARAL
Sbjct: 138 SELNKPGTRLSGGQQQRLCIARAL 161
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 32.1 bits (73), Expect = 0.29
Identities = 12/13 (92%), Positives = 13/13 (100%)
Query: 177 NLSGGQKQRVALA 189
NLSGGQKQRVA+A
Sbjct: 143 NLSGGQKQRVAIA 155
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 32.0 bits (72), Expect = 0.29
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 26/144 (18%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQ------ 123
AL DI+ KG + G GSGKS LL + L+ T GK+ G S
Sbjct: 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV-TVGDIVVSSTSKQKEI 79
Query: 124 --------------EAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQT 169
E+ + +T+ ++ FG PQ + + G
Sbjct: 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFG----PQNFGIPKEKAEKIAAEKLEMVGLAD 135
Query: 170 EIGERG-INLSGGQKQRVALARAL 192
E E+ LSGGQ +RVA+A L
Sbjct: 136 EFWEKSPFELSGGQMRRVAIAGIL 159
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 32.0 bits (73), Expect = 0.30
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 54 GEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL----RSTA 109
G+ES +A V+R I++ +G++VGI G GSGKS AI+ + R A
Sbjct: 14 GDESAPFRA--VDR------ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMA 65
Query: 110 GKLSREGT 117
KL G
Sbjct: 66 EKLEFNGQ 73
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 32.3 bits (74), Expect = 0.31
Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 32/145 (22%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEA 125
+ ++ IN +G+L+ + G GSGKS L + + +G++ +G V+ E
Sbjct: 334 DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG--KPVTAEQ 391
Query: 126 WITNDTLRHNI--------LF-------GEPFEPQRYYKTLYNCALNTDIHILPGGDQTE 170
+ R LF G+P P K L L + E
Sbjct: 392 P---EDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWL---------ERLKMAHKLE 439
Query: 171 IGE---RGINLSGGQKQRVALARAL 192
+ + + LS GQK+R+AL AL
Sbjct: 440 LEDGRISNLKLSKGQKKRLALLLAL 464
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 32.0 bits (73), Expect = 0.31
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 177 NLSGGQKQRVALA 189
LSGGQK+RVALA
Sbjct: 165 ELSGGQKRRVALA 177
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 31.9 bits (72), Expect = 0.32
Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 27/150 (18%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAI-----LSQLRSTAGKLSREGTCAYV 121
+ AL I+ + ++ + G G GKS L + L + G +S G Y
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 122 SQEAWITNDTLRHNI--LFGEP--FEPQRYYKTLYNCALN--TDIHILPGGDQT------ 169
E LR + +F +P F Y +Y L D +L +T
Sbjct: 77 PNE---DVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA 133
Query: 170 -------EIGERGINLSGGQKQRVALARAL 192
+ E ++LSGGQ+QRV +AR L
Sbjct: 134 IWDEVKDHLHESALSLSGGQQQRVCIARVL 163
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 31.5 bits (72), Expect = 0.35
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSAL----LYA 100
E N+ VD++ P+ KLV I G GSGKS+L +YA
Sbjct: 8 EHNLKNVDVDI--PRNKLVVITGVSGSGKSSLAFDTIYA 44
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 32.1 bits (73), Expect = 0.36
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 51/146 (34%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLR 133
IN +G+LV + G GSGKS L + + +G++
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI--------------------- 380
Query: 134 HNILFGEPFEPQRY--YKTLYNCALNTDIHILP---GGDQ-------------------T 169
+L G+P ++ Y+ L++ A+ +D H+ G + T
Sbjct: 381 --LLDGKPVSAEQLEDYRKLFS-AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKT 437
Query: 170 EIGERGI---NLSGGQKQRVALARAL 192
+ + LS GQK+R+AL AL
Sbjct: 438 SLNDGRFSNLKLSTGQKKRLALLLAL 463
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 31.7 bits (72), Expect = 0.36
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 19/45 (42%)
Query: 178 LSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEE 222
LSGG +QRV LARA + + ILLM+E
Sbjct: 165 LSGGMQQRVGLARAFATEA-------------------PILLMDE 190
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 31.4 bits (72), Expect = 0.36
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L +I+ + G L + G G+GK+ LL +L+ R TAG ++ E
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLL-DVLAG-RKTAGVITGE 65
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 31.7 bits (72), Expect = 0.36
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 31/151 (20%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAI-----LSQLRSTAGKLSREGTCAYVS 122
+ AL +IN + ++ I G G GKS + + L T GK+ +
Sbjct: 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF-- 94
Query: 123 QEAWITNDTLRHNILFGEPFE-PQRYYKTLY-NCALNTDIH-ILPGGDQTEIGERGI--- 176
+ + + LR N+ G F+ P + K++Y N IH I EI E+ +
Sbjct: 95 -DKSYSVEELRTNV--GMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGA 151
Query: 177 ---------------NLSGGQKQRVALARAL 192
LSGGQ+QR+ +AR L
Sbjct: 152 AIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 31.7 bits (72), Expect = 0.37
Identities = 41/189 (21%), Positives = 60/189 (31%), Gaps = 40/189 (21%)
Query: 37 SGSKRKKYAAKSKEKSNGEESTHLKA---EDVERNI-ALVDINFFAPKGKLVGICGAVGS 92
K+K +L E E + AL +I++ K K+ I G GS
Sbjct: 4 YFMKKKLKVPNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGS 63
Query: 93 GKSALLYAILSQLRSTAG-----------KLSREGTCAYVSQ------------------ 123
GKS L+ ++S G K +
Sbjct: 64 GKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQ 123
Query: 124 --EAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERG-INLSG 180
E + DT+ +I+FG P ++ G ER LSG
Sbjct: 124 FPEYQLFKDTIEKDIMFG----PVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG 179
Query: 181 GQKQRVALA 189
GQK+RVA+A
Sbjct: 180 GQKRRVAIA 188
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 31.3 bits (71), Expect = 0.38
Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 44/170 (25%)
Query: 58 THLKAEDV----ERNIALVDINFFAPKGKLVGICGAVGSGKSALL--YAILSQLRS---T 108
H +++ L DIN K ++ G G GKS L + ++
Sbjct: 4 IHASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV 63
Query: 109 AGKLSREGTCAYVSQEAWITNDT----LRHNILFGEPFE-PQRYYKTLY-NCALNTDIHI 162
G+L +G Y + DT LR + G F+ P + K++Y N A +H
Sbjct: 64 KGELDIDGIDVY-------SVDTNVVLLRAKV--GMVFQKPNPFPKSIYDNVAYGPKLHG 114
Query: 163 LPGGDQT----------------EIGER----GINLSGGQKQRVALARAL 192
L + E+G+R LSGGQ+QR+ +ARA+
Sbjct: 115 LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 31.6 bits (72), Expect = 0.39
Identities = 44/167 (26%), Positives = 63/167 (37%), Gaps = 58/167 (34%)
Query: 60 LKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-C 118
LKA D + +G+ +G+ G G GKS AI+ +++T G+++ G
Sbjct: 34 LKAVD--------GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85
Query: 119 AYVSQEAW---------ITNDTL-----RHNILFGEPF-EPQRYYKTLYNCALNTDIHIL 163
+ + W I D L R I GE EP R Y
Sbjct: 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTI--GEIIAEPLRTYH-------------- 129
Query: 164 PGGDQTEIGER--------G-----IN-----LSGGQKQRVALARAL 192
P + E+ +R G IN SGGQ QR+ +ARAL
Sbjct: 130 PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARAL 176
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 31.0 bits (70), Expect = 0.40
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSR 114
+ G G+GK++LL +L L AGK +
Sbjct: 29 LTGPSGTGKTSLLRELLEGLLVAAGKCDQ 57
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 31.6 bits (72), Expect = 0.40
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL 105
A+ D+NF G+ +GI G GSGKS +A++ L
Sbjct: 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL 66
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 31.4 bits (71), Expect = 0.43
Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 22/146 (15%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127
N AL IN P ++ + G G GKS LL L+++ + G ++ +
Sbjct: 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRC-LNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 128 TNDTLRHNILFGEPFE-PQRYYKTLY-NCALN------TDIHILPGGDQT---------E 170
D I G F+ P + ++Y N A D +L + E
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE 134
Query: 171 IGER----GINLSGGQKQRVALARAL 192
+ +R LSGGQ+QR+ +AR +
Sbjct: 135 VKDRLKSHAFGLSGGQQQRLCIARTI 160
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 31.1 bits (70), Expect = 0.49
Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 53/225 (23%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAI-----LSQLRSTAGKLSREGTCAYVSQE 124
AL +++ PK + + G G GKS + + L + GK+S EG Y E
Sbjct: 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY---E 83
Query: 125 AWITNDTLRHNILFGEPFE-PQRYYKTLY-NCALNTDIHILPGGDQTEIG---------- 172
+ LR N+ G F+ P + ++Y N A IH G ++ ++
Sbjct: 84 PDVDVVELRKNV--GMVFQKPNPFPMSIYDNVAYGPRIH---GANKKDLDGVVENALRSA 138
Query: 173 -----------ERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI---- 217
++LSGGQ+QR+ +AR L + + + F P +L I
Sbjct: 139 ALWDETSDRLKSPALSLSGGQQQRLCIARTL---AVKPKIILFDE---PTSALDPISTAR 192
Query: 218 ---LLMEEVNVY----VSKPIDKSSAVSIAGGSFLWDTLLDSSKT 255
L+M Y V+ + +++ +S G FL L++ +T
Sbjct: 193 IEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQT 237
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 31.2 bits (71), Expect = 0.49
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQKQRVA+A A+
Sbjct: 141 LSGGQKQRVAIAGAV 155
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 31.2 bits (70), Expect = 0.51
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 23/145 (15%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL +IN K + + G G GKS L L+++ + EG Y + + N
Sbjct: 22 ALNNINIKILKNSITALIGPSGCGKSTFLRT-LNRMNDLVEGIKIEGNVIYEGKNIYSNN 80
Query: 130 -DTLRHNILFGEPFE-PQRYYKTLY-NCALNTDIH-------------------ILPGGD 167
D L G F+ P + ++Y N + IH L
Sbjct: 81 FDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV 140
Query: 168 QTEIGERGINLSGGQKQRVALARAL 192
+ ++ ++LSGGQ+QR+ +AR L
Sbjct: 141 KDKLNTNALSLSGGQQQRLCIARTL 165
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 31.6 bits (72), Expect = 0.54
Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 24/133 (18%)
Query: 51 KSNGEESTHLKAEDVERNIALVD----INFFAPKGKLVGICGAVGSGKSALLYAILSQLR 106
S+ L A + + + V+ I+F G++ + G G+GKS L+ I +
Sbjct: 3 TSDTTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62
Query: 107 STAGKLSREGT-CAY-------------VSQEAWI-TNDTLRHNILFGEPFEPQRYYK-- 149
+G L G CA V QE + N +++ NILFG P K
Sbjct: 63 PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMK 122
Query: 150 ---TLYNCALNTD 159
C L+ D
Sbjct: 123 QLLAALGCQLDLD 135
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 31.0 bits (71), Expect = 0.55
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAI 101
L +N +G++ I G GSGKS L Y I
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTI 50
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 30.8 bits (70), Expect = 0.65
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAY-VSQEAWIT 128
A+ +NF +G++ G G G+GK+ + + + LR T+G G Y V +E
Sbjct: 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAG---YDVVREP--- 61
Query: 129 NDTLRHNI-LFGEPFEPQRYYKTLYNCALNTDIHILPGG----------DQTEIGERGIN 177
+R +I + + N + ++ LP + E+GE
Sbjct: 62 -RKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR 120
Query: 178 L----SGGQKQRVALARAL 192
SGG ++R+ +A +L
Sbjct: 121 PVGTYSGGMRRRLDIAASL 139
>gnl|CDD|232890 TIGR00235, udk, uridine kinase. Model contains a number of longer
eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 207
Score = 30.4 bits (69), Expect = 0.66
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLR 106
PKG ++GI G GSGK+ + I QL
Sbjct: 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
Length = 218
Score = 30.7 bits (70), Expect = 0.66
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRS 107
K ++GI G GSGK+ + + QL
Sbjct: 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV 34
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 30.4 bits (69), Expect = 0.70
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112
A+ ++F +G++ G+ G G+GK+ + + + L+ T+G+
Sbjct: 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 30.5 bits (69), Expect = 0.71
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-TCAYVSQEAWITNDTLRHNILF 138
+ +++GI G G GK+ + + L+ G + E T +Y Q + ++L
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS 83
Query: 139 G--EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARAL 192
+ F Y+KT +I P + + LSGG+ QRVA+A L
Sbjct: 84 SITKDFYTHPYFKT--------EI-AKPLQIEQILDREVPELSGGELQRVAIAACL 130
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 30.1 bits (68), Expect = 0.73
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 85 GICGAVGSGKSALLYAILSQ 104
+ G G GKS+LL A+L
Sbjct: 1 VVVGRGGVGKSSLLNALLGG 20
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 30.9 bits (70), Expect = 0.74
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 43 KYAAKSKEKSNGEESTHLKAEDVER--NIALVDINFFAPKGKLVGICGAVGSGKSALLYA 100
++ A + SN T + +V + DI+F +G+++G G VGSG++ L+
Sbjct: 249 RFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNC 308
Query: 101 ILSQLRSTAGKLSREG 116
+ + G++ G
Sbjct: 309 LFGVDKRAGGEIRLNG 324
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 30.3 bits (69), Expect = 0.76
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 83 LVGICGAVGSGKSAL---LYAILSQLRSTA 109
+VGI G G+GKS L L A+L Q
Sbjct: 35 IVGIAGPPGAGKSTLAEFLEALLQQDGELP 64
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 30.9 bits (70), Expect = 0.86
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 81 GKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--CAYVSQE 124
G+ VG+ G G GKS LL + +++ + G + G A+V+QE
Sbjct: 27 GQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQE 72
>gnl|CDD|224116 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 30.7 bits (70), Expect = 0.92
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 58 THLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAI--LSQLRS 107
L + RN A +D++ + + G G GK+ LL AI L+ RS
Sbjct: 4 LSLLLRNF-RNYAELDLDLSP---GVNVLVGENGQGKTNLLEAIYLLALGRS 51
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 30.6 bits (69), Expect = 0.94
Identities = 29/132 (21%), Positives = 44/132 (33%), Gaps = 16/132 (12%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L ++N G +V + G G+GK+ L LR G G Y +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTL-------LRMILGAQKGRGEEKYRPDSGKVEV 450
Query: 130 DTLRHNILFGEPFEPQ--------RYYKTLYNCALNTDIHILPG-GDQTEIGERGINLSG 180
+ L +EP+ + +I G D + LS
Sbjct: 451 PKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELST 510
Query: 181 GQKQRVALARAL 192
GQK+R LA+ L
Sbjct: 511 GQKERAKLAKLL 522
>gnl|CDD|215920 pfam00437, T2SE, Type II/IV secretion system protein. This family
contains both type II and type IV pathway secretion
proteins from bacteria. VirB11 ATPase is a subunit of
the Agrobacterium tumefaciens transfer DNA (T-DNA)
transfer system, a type IV secretion pathway required
for delivery of T-DNA and effector proteins to plant
cells during infection.
Length = 273
Score = 30.3 bits (69), Expect = 0.95
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 86 ICGAVGSGKSALLYAILSQL 105
+ G GSGK+ LLYA+L+++
Sbjct: 134 VSGGTGSGKTTLLYALLNEI 153
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 30.2 bits (68), Expect = 1.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 168 QTEIGERGINLSGGQKQRVALARAL 192
+ + + LSGGQ+QR+ +AR L
Sbjct: 191 NDRLDDNALGLSGGQQQRLCIARCL 215
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 30.3 bits (68), Expect = 1.0
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 170 EIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSI-------LLMEE 222
++ + + LSGGQ+QR+ +AR + +++ P +L I L++E
Sbjct: 140 DLKKSALKLSGGQQQRLCIARTIAVKP------DVILMDEPTSALDPISTLKIEDLMVEL 193
Query: 223 VNVY----VSKPIDKSSAVSIAGGSFLWDTLLDSSKT 255
Y V+ + ++S VS FL L++ +KT
Sbjct: 194 KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKT 230
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 30.5 bits (68), Expect = 1.1
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYV---SQEAWI 127
L D+N + K+ G G GKS L L+QL S EG ++ ++ I
Sbjct: 98 LHDLNLDIKRNKVTAFIGPSGCGKSTFLRN-LNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 128 TNDTLRHNI--LFGEP--FEPQRYYKTLY---NCALNTDIHILP-------------GGD 167
++ LR I +F +P FE + Y N +N D IL
Sbjct: 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIN-DRKILEKIVEKSLKSAALWDEV 215
Query: 168 QTEIGERGINLSGGQKQRVALARAL 192
+ ++ + G LSGGQ+QR+ +ARA+
Sbjct: 216 KDDLDKAGNALSGGQQQRLCIARAI 240
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 29.8 bits (67), Expect = 1.1
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 176 INLSGGQKQRVALARALYSNSFEQQTFHFL 205
I+LSGG+ QRVA+A AL N+ TF+
Sbjct: 70 IDLSGGELQRVAIAAALLRNA----TFYLF 95
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 30.6 bits (69), Expect = 1.1
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 32/156 (20%)
Query: 65 VERNI-ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----C 118
V R + A+ ++F G+ + + G GSGKS A+L + S G++ G
Sbjct: 333 VTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392
Query: 119 AYVSQEAWITNDTLRHNI--LFGEPFEPQRYYKTL-YNCALNTDIHILPGGDQ-----TE 170
Q LR +I +F +P+ +T+ + +H L G
Sbjct: 393 PGKLQ-------ALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAW 445
Query: 171 IGER-GI----------NLSGGQKQRVALARALYSN 195
+ ER G+ SGGQ+QR+ +ARAL N
Sbjct: 446 LLERVGLLPEHAWRYPHEFSGGQRQRICIARALALN 481
Score = 28.7 bits (64), Expect = 4.1
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 63 EDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116
++ ++ A+ +++F +G+ + I G GSGKS A++ L G + +
Sbjct: 24 QEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77
>gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional.
Length = 876
Score = 30.2 bits (69), Expect = 1.2
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 80 KGKLVGICGAVGSGK--SALLYAILSQL--RSTAGKLSREGTCAYVS 122
+GK V I GSGK +A L AI+ +L G+L + C YVS
Sbjct: 46 EGKNVLISSPTGSGKTLAAFL-AIIDELFRLGREGELEDKVYCLYVS 91
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 30.0 bits (67), Expect = 1.2
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 31/144 (21%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALL------------------YAILSQLRST--A 109
AL + + K K+ + G GSGKS ++ YAI + L+
Sbjct: 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85
Query: 110 GKLSREGTCAYVSQEAWITNDTLRHNILFGEPF----EPQRYYKTLYNCALNTDIHILPG 165
+L +E + E + +T+ +I FG P Q YK + + LP
Sbjct: 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFG-PVNLGENKQEAYKKVPEL---LKLVQLP- 140
Query: 166 GDQTEIGERGINLSGGQKQRVALA 189
+ + LSGGQK+RVALA
Sbjct: 141 --EDYVKRSPFELSGGQKRRVALA 162
>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether UreG
binds GTP or some other nucleotide. Both enzymes are
involved in nickel binding. HypB can store nickel and is
required for nickel dependent hydrogenase expression.
UreG is required for functional incorporation of the
urease nickel metallocenter. GTP hydrolysis may required
by these proteins for nickel incorporation into other
nickel proteins. This family of domains also contains
P47K, a Pseudomonas chlororaphis protein needed for
nitrile hydratase expression, and the cobW gene product,
which may be involved in cobalamin biosynthesis in
Pseudomonas denitrificans.
Length = 178
Score = 29.5 bits (67), Expect = 1.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 84 VGICGAVGSGKSALLYAILSQLR 106
+ G +GSGK+ LL +L + R
Sbjct: 3 TVLTGFLGSGKTTLLEHLLEKNR 25
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 29.7 bits (67), Expect = 1.3
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QR+ +ARA+
Sbjct: 164 LSGGQQQRLCIARAI 178
>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family
primarily contains translation initiation, elongation
and release factors. The GTP translation factor family
consists primarily of translation initiation,
elongation, and release factors, which play specific
roles in protein translation. In addition, the family
includes Snu114p, a component of the U5 small nuclear
riboprotein particle which is a component of the
spliceosome and is involved in excision of introns,
TetM, a tetracycline resistance gene that protects the
ribosome from tetracycline binding, and the unusual
subfamily CysN/ATPS, which has an unrelated function
(ATP sulfurylase) acquired through lateral transfer of
the EF1-alpha gene and development of a new function.
Length = 183
Score = 29.6 bits (67), Expect = 1.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 84 VGICGAVGSGKSALLYAILSQL 105
VG+ G V GK+ L ++L Q
Sbjct: 2 VGVIGHVDHGKTTLTGSLLYQT 23
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 29.9 bits (68), Expect = 1.6
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 62 AEDVERNIA---LVDINFFAP--KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116
E+V I LV +F A +G + + G G GK+ LL +L QL++ +G++ G
Sbjct: 322 MENVNYQIDGKQLVK-DFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCG 379
Query: 117 T---CAYVSQ 123
T AY Q
Sbjct: 380 TKLEVAYFDQ 389
Score = 29.9 bits (68), Expect = 1.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 178 LSGGQKQRVALARALYSN 195
LSGG ++ AL RAL SN
Sbjct: 157 LSGGWLRKAALGRALVSN 174
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 29.8 bits (67), Expect = 1.6
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 56 ESTHLKAEDV-ERNIALVD-INFFAPKGKLVGICGAVGSGKSALLYAI 101
E+ +L DV + VD ++F +G+++G+ G VG+G++ L+ A+
Sbjct: 259 EARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQAL 306
Score = 29.8 bits (67), Expect = 1.9
Identities = 48/204 (23%), Positives = 78/204 (38%), Gaps = 46/204 (22%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILS-----------------QLRSTAGKL 112
AL I+ G+ VG+CG G+GKS L+ ILS L+++ +
Sbjct: 16 ALDGIDLEVRPGECVGLCGENGAGKSTLM-KILSGVYPHGTWDGEIYWSGSPLKASNIRD 74
Query: 113 SREGTCAYVSQE-AWITNDTLRHNILFGE----PFEPQRYYKTLYNC-ALNTDIHILPGG 166
+ + QE + ++ NI G P Y L ++ +
Sbjct: 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN 134
Query: 167 DQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQ----SILL--- 219
+G+ G GGQ+Q V +A+AL + L+L P SL ILL
Sbjct: 135 VTRPVGDYG----GGQQQLVEIAKAL------NKQARLLILDEPSSSLTEKETEILLDII 184
Query: 220 --MEEVN---VYVSKPIDKSSAVS 238
++ VY+S +++ AV
Sbjct: 185 RDLKAHGVACVYISHKLNEVKAVC 208
>gnl|CDD|182479 PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB;
Provisional.
Length = 290
Score = 29.8 bits (67), Expect = 1.7
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
Query: 54 GEESTH---------LKAE-DV-ERNIALVDIN--FFAPKGKLV-GICGAVGSGKSALLY 99
GE TH L+ E DV ++N L + N FA + +LV + + GSGK+ LL
Sbjct: 63 GEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLT 122
Query: 100 AILSQLRSTAGKLSREGTCAYVSQEAWITNDTLR 133
L +L+ + CA + + ND R
Sbjct: 123 ETLMRLKDSV-------PCAVIEGDQQTVNDAAR 149
>gnl|CDD|220739 pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein
DNA-binding domain. The plasmid conjugative coupling
protein TrwB forms hexamers from six structurally very
similar protomers. This hexamer contains a central
channel running from the cytosolic pole (made up by the
AADs) to the membrane pole ending at the transmembrane
pore shaped by 12 transmembrane helices, rendering an
overall mushroom-like structure. The TrwB_AAD (all-alpha
domain) domain appears to be the DNA-binding domain of
the structure. TrwB, a basic integral inner-membrane
nucleoside-triphosphate-binding protein, is the
structural prototype for the type IV secretion system
coupling proteins, a family of proteins essential for
macromolecular transport between cells and export.
Length = 386
Score = 29.9 bits (68), Expect = 1.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 86 ICGAVGSGKSALLYAILSQLR 106
I G G+GK+ L +L Q+R
Sbjct: 20 IVGTTGTGKTQALRELLDQIR 40
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 28.8 bits (65), Expect = 1.7
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 86 ICGAVGSGKS-ALLYAILSQLRSTAGK 111
+ GSGK+ A L IL L S G
Sbjct: 5 LAAPTGSGKTLAALLPILELLDSLKGG 31
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 29.4 bits (66), Expect = 1.7
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVS 122
P+G +V I G G+GK+ L + YVS
Sbjct: 21 PRGSVVLITGPPGTGKTIFALQFLYEG------AREGEPVLYVS 58
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 29.4 bits (67), Expect = 1.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK 111
AL D++ + G+L I G G+GK+ ++ I + R G
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGS 58
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 29.5 bits (66), Expect = 1.8
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QR+ +ARAL
Sbjct: 147 LSGGQQQRLCIARAL 161
>gnl|CDD|152611 pfam12176, MtaB, Methanol-cobalamin methyltransferase B subunit.
This family of proteins is found in bacteria and
archaea. Proteins in this family are approximately 460
amino acids in length. MtaB folds as a TIM barrel and
contains a novel zinc-binding motif. Zinc(II) lies at
the bottom of a funnel formed at the C-terminal
beta-barrel end and ligates to two cysteinyl sulfurs
(Cys-220 and Cys-269) and one carboxylate oxygen
(Glu-164). The function of this protein is to catalyze
the cleavage of the C O bond in methanol by an SN2
mechanism. It complexes with MtaA and MtaC to perform
this function.
Length = 460
Score = 29.7 bits (67), Expect = 2.0
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 60 LKAEDVERNIALVDINFFAPKGKLVGICGAVGSGK-----SALLYAILSQLRSTAGKLSR 114
L ++++ +A V AP+ + GAVG GK + ++ AI S GK S
Sbjct: 233 LLSKNLAHTLAAVARAISAPRSLVAYEAGAVGPGKDCGYENPIVKAIAGVPISAEGKTS- 291
Query: 115 EGTCAYVSQ---------EAWITNDTLRHNILFGEPFEPQRYYKTL-YNCAL-NTDIHI 162
TCA+ + W +N+++ ++ FG PQ + +TL Y+CAL NT +
Sbjct: 292 --TCAHSDLMGNLAMQVCDLW-SNESVEYHGEFGGT-TPQVWTETLAYDCALMNTATAL 346
>gnl|CDD|238543 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B. This group of
recombinases includes the eukaryotic proteins RAD51,
RAD55/57 and the meiosis-specific protein DMC1, and the
archaeal proteins radA and radB. They are closely
related to the bacterial RecA group. Rad51 proteins
catalyze a similiar recombination reaction as RecA,
using ATP-dependent DNA binding activity and a
DNA-dependent ATPase. However, this reaction is less
efficient and requires accessory proteins such as
RAD55/57 .
Length = 235
Score = 29.1 bits (66), Expect = 2.0
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 79 PKGKLVGICGAVGSGKSALLY--AILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRH 134
G + I G GSGK+ L + A+ QL G L EG Y+ T T R
Sbjct: 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGL--EGKAVYID-----TEGTFRP 67
>gnl|CDD|131577 TIGR02525, plasmid_TraJ, plasmid transfer ATPase TraJ. Members of
this protein family are predicted ATPases associated
with plasmid transfer loci in bacteria. This family is
most similar to the DotB ATPase of a type-IV
secretion-like system of obligate intracellular
pathogens Legionella pneumophila and Coxiella burnetii
(TIGR02524) [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 372
Score = 29.4 bits (66), Expect = 2.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 75 NFFAPKGKLVGICGAVGSGKSALLYAI 101
N P L ICG GSGKS L +I
Sbjct: 143 NSLLPAAGLGLICGETGSGKSTLAASI 169
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 27.5 bits (62), Expect = 2.2
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 164 PGGDQTEIGERGINLSGGQKQR---VALA---RALYSNSFEQQTFHFLVL 207
G + E+ LSGG+KQ +ALA A Y ++ + L
Sbjct: 9 EDGSERELSRDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFL 58
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 28.7 bits (65), Expect = 2.3
Identities = 35/141 (24%), Positives = 49/141 (34%), Gaps = 36/141 (25%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAIL----------SQLRSTAGKLSREG-TCAYV 121
+I FF+P L I G G+GK+ ++ A+ S+ + KL REG A V
Sbjct: 17 EIEFFSP---LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQV 73
Query: 122 SQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI-NLSG 180
N G+ + R L N G+ SG
Sbjct: 74 KLAFENAN---------GKKYTITRSLAILENVI------FCHQGESNWPLLDMRGRCSG 118
Query: 181 GQKQ------RVALARALYSN 195
G+K R+ALA SN
Sbjct: 119 GEKVLASLIIRLALAETFGSN 139
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 28.7 bits (64), Expect = 2.6
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITND 130
++I+F L I G GSGK+ +L AI L +L + V + I D
Sbjct: 13 LEIDF---SKGLTLIYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGIVKGDIEIEKD 68
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 28.8 bits (65), Expect = 2.7
Identities = 41/171 (23%), Positives = 65/171 (38%), Gaps = 20/171 (11%)
Query: 42 KKYAAKSKEKSNGEESTHLKAEDVERN--IALVDINFFAPKGKLVGICGAVGSGKSALLY 99
K K E LK V RN L D+++ G+ I G G+GK+ LL
Sbjct: 16 PKEPKKRHPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLS 75
Query: 100 AILSQLRSTAGKL--------SREG------TCAYVS---QEAWITNDTLRHNILFGEPF 142
+ + ++G + E VS E + +T+R +L G
Sbjct: 76 LLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFA 135
Query: 143 EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI-NLSGGQKQRVALARAL 192
Y + L L +L + +R +LS G+++RV +ARAL
Sbjct: 136 SIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARAL 186
>gnl|CDD|238549 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is the
main terminal branch of the general secretory pathway
(GSP). It is responsible for the export the majority of
Gram-negative bacterial exoenzymes and toxins. PulE is a
cytoplasmic protein of the GSP, which contains an ATP
binding site and a tetracysteine motif. This subgroup
also includes PillB and HofB.
Length = 264
Score = 28.8 bits (65), Expect = 2.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 88 GAVGSGKSALLYAILSQLRST 108
G GSGK+ LY+ LS+L +
Sbjct: 87 GPTGSGKTTTLYSALSELNTP 107
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 29.0 bits (64), Expect = 2.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 83 LVGICGAVGSGKSALLYAI 101
L I G GSGKS LL A+
Sbjct: 1 LNVIIGPNGSGKSNLLKAL 19
>gnl|CDD|131585 TIGR02533, type_II_gspE, type II secretion system protein E. This
family describes GspE, the E protein of the type II
secretion system, also called the main terminal branch
of the general secretion pathway. This model separates
GspE from the PilB protein of type IV pilin biosynthesis
[Protein fate, Protein and peptide secretion and
trafficking, Cellular processes, Pathogenesis].
Length = 486
Score = 29.3 bits (66), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 88 GAVGSGKSALLYAILSQLRST 108
G GSGK+ LYA LS+L +
Sbjct: 249 GPTGSGKTTTLYAALSRLNTP 269
>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
Length = 283
Score = 28.8 bits (65), Expect = 2.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 83 LVGICGAVGSGKSAL 97
++GI G+V GKS
Sbjct: 84 IIGIAGSVAVGKSTT 98
>gnl|CDD|132282 TIGR03238, dnd_assoc_3, DNA phosphorothioation-dependent
restriction protein DptF. A DNA sulfur modification
(phosphorothioation) system, dnd (degradation during
electrophoresis), is sparsely and sporadically
distributed among the bacteria. This protein is one
member of a three-gene restriction enzyme cassette that
depends on DNA phosphorothioation [DNA metabolism,
Restriction/modification].
Length = 504
Score = 29.1 bits (65), Expect = 3.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 62 AEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALL 98
D+ER + V N P L+ +CG+ G GKS +L
Sbjct: 15 QTDLERIL--VKFNKELPSSSLLFLCGSSGDGKSEIL 49
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 28.3 bits (63), Expect = 3.1
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNI---LFGEPF 142
I GA G GKS+LL I ++ ++G + + + + T + HN+ L F
Sbjct: 31 IKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCT--YIGHNLGLKLEMTVF 88
Query: 143 EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALAR 190
E +++ +YN A I + E+ +LS G ++ VA+AR
Sbjct: 89 ENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIAR 136
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 29.2 bits (65), Expect = 3.2
Identities = 46/186 (24%), Positives = 63/186 (33%), Gaps = 53/186 (28%)
Query: 30 LLDGSKTSGS---KRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGI 86
LL K+ S K K+ E S G AL I+ +G +V I
Sbjct: 328 LLAHDKSVDSIELKDVHMNPKAPEGSEG--------------FALGPIDLRIAQGDIVFI 373
Query: 87 CGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPF---- 142
G G GKS L G++ +G A VS + + D R LF F
Sbjct: 374 VGENGCGKSTLAKLFCGLYIPQEGEILLDG--AAVSAD---SRDDYRD--LFSAIFADFH 426
Query: 143 -----------------EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQR 185
Q+Y + L + + I GG T LS GQ++R
Sbjct: 427 LFDDLIGPDEGEHASLDNAQQYLQRL---EIADKVKIEDGGFSTT-----TALSTGQQKR 478
Query: 186 VALARA 191
+AL A
Sbjct: 479 LALICA 484
>gnl|CDD|226716 COG4266, Alc, Allantoicase [Nucleotide transport and metabolism].
Length = 334
Score = 29.0 bits (65), Expect = 3.2
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 31/106 (29%)
Query: 162 ILPGGDQTEIGERGINLSGGQKQR-----------VALARALYSNSFEQQTFHFLVLLCP 210
+LPG RGIN+ G + R V L + T HF
Sbjct: 210 LLPG--------RGINMGDGWETRRRREPGHDWVIVKLGARGFIEKILVDTAHFKGNYPD 261
Query: 211 CVSLQSILLMEEVNVYVSKPIDKSSAVSIAGGSFLWDTLLDSSKTS 256
SLQ+ L ++ +A SI + W LL + K
Sbjct: 262 FCSLQAAL------------VEGGTAASINTQAMFWVELLPARKLG 295
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 29.1 bits (65), Expect = 3.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRST 108
KG+ +G+ GSGKS+LL I +ST
Sbjct: 156 KGQRIGVFSEPGSGKSSLLSTIAKGSKST 184
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 28.6 bits (64), Expect = 3.3
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 33/141 (23%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------CAY 120
++F G+ G+ G G+GKS + IL AGK++ G
Sbjct: 59 GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118
Query: 121 VSQEAWITND-TLRHNIL-FGEPFEPQRYYKTLYNCALNT-DIH-ILP-----GGDQTEI 171
V Q + + T+R N+L FG RY ++T +I ++P +++
Sbjct: 119 VPQFDNLDLEFTVRENLLVFG------RY------FGMSTREIEAVIPSLLEFARLESKA 166
Query: 172 GERGINLSGGQKQRVALARAL 192
R +LSGG K+R+ LARAL
Sbjct: 167 DARVSDLSGGMKRRLTLARAL 187
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 28.6 bits (64), Expect = 3.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 79 PKGKLVGICGAVGSGKSALL 98
P GK+ G+ G GSGKS LL
Sbjct: 35 PAGKVTGLIGHNGSGKSTLL 54
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 28.5 bits (64), Expect = 3.4
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 167 DQTEIG---ERGI-NLSGGQKQRVALARAL 192
DQ E+ +R I LSGG+ QRVA+A AL
Sbjct: 125 DQLELRHVLDRNIDQLSGGELQRVAIAAAL 154
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 28.4 bits (63), Expect = 3.5
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QR+ +ARAL
Sbjct: 149 LSGGQQQRLCIARAL 163
>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair].
Length = 408
Score = 28.4 bits (64), Expect = 4.0
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQ 145
I G VG GK+ LL AI ++ + Y++ E + TND ++ + E + +
Sbjct: 118 IYGGVGLGKTHLLQAIGNEALANGPNARV----VYLTSEDF-TNDFVKA-LRDNEMEKFK 171
Query: 146 RYYKTLYNCALNTDIHILPGGDQTE 170
Y + L DI L G ++T+
Sbjct: 172 EKYS--LDLLLIDDIQFLAGKERTQ 194
>gnl|CDD|224677 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis
protein [Coenzyme metabolism].
Length = 161
Score = 28.1 bits (63), Expect = 4.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLR 106
K++GI G SGK+ L+ ++ +L+
Sbjct: 3 KILGIVGYKNSGKTTLIEKLVRKLK 27
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 28.8 bits (65), Expect = 4.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 177 NLSGGQKQRVALARAL 192
LSGG+ QRVA+A AL
Sbjct: 455 ELSGGELQRVAIAAAL 470
Score = 27.6 bits (62), Expect = 9.7
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 169 TEIGERGIN-LSGGQKQRVALARAL 192
+ +R ++ LSGG+ QRVA+A AL
Sbjct: 204 ENVLDRDVSELSGGELQRVAIAAAL 228
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the form
of molybdenum cofactor (Moco) which is associated with
the metabolism of nitrogen, carbon and sulfur by redox
active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe and
mog. The mob locus contains mobA and mobB genes. MobB
catalyzes the attachment of the guanine dinucleotide to
molybdopterin.
Length = 159
Score = 27.6 bits (62), Expect = 4.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLR 106
K++G G GSGK+ LL ++ L
Sbjct: 2 KVIGFVGYSGSGKTTLLEKLIPALS 26
>gnl|CDD|235858 PRK06762, PRK06762, hypothetical protein; Provisional.
Length = 166
Score = 27.6 bits (62), Expect = 5.3
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILF 138
L+ I G GSGK+ I QL+ G+ VSQ D +R ++L
Sbjct: 3 TLIIIRGNSGSGKT----TIAKQLQERLGR-----GTLLVSQ------DVVRRDMLR 44
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 28.0 bits (62), Expect = 5.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 173 ERGINLSGGQKQRVALARAL 192
++LSGGQ+QR+ +AR L
Sbjct: 160 SSALSLSGGQQQRLCIARTL 179
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 28.3 bits (63), Expect = 5.4
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 78 APKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA 119
A +G+ + + G G GKS L++ ++ ++R R
Sbjct: 501 AGRGRAILVVGEAGIGKSRLVHELVEKVR------GRPHAFL 536
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 27.8 bits (62), Expect = 5.5
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 178 LSGGQKQRVALARAL 192
LSGG K+R+ LARAL
Sbjct: 139 LSGGMKRRLTLARAL 153
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 28.1 bits (63), Expect = 5.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 75 NFFAPKGKLVG---ICGAVGSGKSALLYAILSQLR 106
NF G+ VG I G G+GK+ LL +L+Q
Sbjct: 429 NFHV--GEDVGHTLIIGPTGAGKTVLLSFLLAQAL 461
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 27.9 bits (62), Expect = 5.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 176 INLSGGQKQRVALARAL 192
+ LSGGQ+QR+ +AR L
Sbjct: 181 LGLSGGQQQRLCVARTL 197
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 28.0 bits (63), Expect = 6.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQ 104
+G+ +GI G GKS LL I
Sbjct: 144 EGQRIGIFAGAGVGKSTLLGMIARG 168
>gnl|CDD|218150 pfam04559, Herpes_UL17, Herpesvirus UL17 protein. UL17 protein is
required for DNA cleavage and packaging in herpes
viruses. It has been shown to associate with immature
B-type capsids, and is required for the the localisation
of capsids and capsid proteins to the intranuclear sites
where viral DNA is cleaved and packaged. In the virion,
UL17 is a component of the tegument, which is a protein
layer surrounding the viral capsid.
Length = 496
Score = 28.2 bits (63), Expect = 6.3
Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 21/100 (21%)
Query: 86 ICGAVGSGKSALLYAILSQL------------------RSTAGKLSREGTCAYVSQEAWI 127
A+ S SA + A L+ L S G + R
Sbjct: 390 WRSAL-SENSAWIKAALAHLSRKAGRGWLDVVYLFDYGSSGWGDVIRLSKPPVAVGLEIR 448
Query: 128 TNDTLRHN-ILFGEPFEPQRYYKTLYNCALNTDIHILPGG 166
L P E Y LY+ L + +LPGG
Sbjct: 449 LLLGLSPLLCERYLPGESYAYVCVLYSSDLEAWL-VLPGG 487
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 27.2 bits (61), Expect = 6.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 85 GICGAVGSGKSALLYAILSQLRS 107
I G GKS+LL A+L Q
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVG 23
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains (pfam00036),
that may bind calcium. They are also larger than
classical small GTPases. It has been proposed that they
are involved in mitochondrial homeostasis and apoptosis.
Length = 116
Score = 26.6 bits (59), Expect = 7.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA 119
V + G GSGKS+LL ++ + T A
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLA 37
>gnl|CDD|234340 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope of
this family, include type IV secretion/conjugal transfer
proteins such as TraC, VirB4 and TrsE. The granularity
of this protein family definition is chosen so as to
represent one distinctive clade and act as a marker
through which to define and recognize the class of
mobile element it serves [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 893
Score = 28.1 bits (63), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 86 ICGAVGSGKSALLYAILSQL 105
I G G+GKSA L +L Q+
Sbjct: 480 ILGPTGAGKSATLTNLLMQV 499
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 27.6 bits (61), Expect = 7.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 84 VGICGAVGSGKSALLYAILS 103
+ + G G GK+ LL ++
Sbjct: 8 IVVLGDGGVGKTTLLNRLVG 27
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer from
ATP to uridine or cytidine to yield UMP or CMP. In the
primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as 5-flurrouridine
and cyclopentenyl-cytidine.
Length = 198
Score = 27.5 bits (62), Expect = 7.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRS 107
++GI G GSGK+ + I+ QL +
Sbjct: 1 IIGIAGGSGSGKTTVAEEIIEQLGN 25
>gnl|CDD|191413 pfam05970, PIF1, PIF1-like helicase. This family includes
homologues of the PIF1 helicase, which inhibits
telomerase activity and is cell cycle regulated. This
family includes a large number of largely
uncharacterized plant proteins. This family includes a
P-loop motif that is involved in nucleotide binding.
Length = 364
Score = 27.7 bits (62), Expect = 7.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRST 108
G + + G G+GK+ L A+ + LRS
Sbjct: 21 LGGVFFVYGYGGTGKTYLWKALSASLRSR 49
>gnl|CDD|222831 PHA01747, PHA01747, putative ATP-dependent protease.
Length = 425
Score = 27.9 bits (62), Expect = 7.6
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 12 IDKSSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIAL 71
K + I G L+ T+L G + + K + NGE + +A DV +
Sbjct: 342 EKKITYDDIISGRVLYPTILRGLISLVQSKINRMTKDLDCGNGESRRNEQAIDVLCVLQA 401
Query: 72 VDINFFAPK 80
+D++ +
Sbjct: 402 LDVDLDNFE 410
>gnl|CDD|223703 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 27.7 bits (62), Expect = 7.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 80 KGKLVGICGAVGSGKSALLYAIL 102
K + ICG SGK+ LL A+L
Sbjct: 142 ARKSIIICGGTASGKTTLLNALL 164
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 27.4 bits (61), Expect = 8.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 86 ICGAVGSGKSALLYAILSQLR 106
I G GSGKS LL + +L
Sbjct: 6 IVGPSGSGKSTLLKLLALRLL 26
>gnl|CDD|227297 COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF
[Intracellular trafficking and secretion].
Length = 355
Score = 27.3 bits (61), Expect = 8.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 86 ICGAVGSGKSALLYAIL 102
I G GSGK+ LL A+
Sbjct: 178 ISGGTGSGKTTLLNALS 194
>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
Length = 208
Score = 27.3 bits (61), Expect = 8.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 83 LVGICGAVGSGKSAL 97
LVG+ G +GSGKS +
Sbjct: 7 LVGVTGGIGSGKSTV 21
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 27.1 bits (61), Expect = 9.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 78 APKGKLVGICGAVGSGKSALLYAILSQ 104
KG L+ + G G GKS L+ A+L
Sbjct: 1 MSKGLLIVLSGPSGVGKSTLVKALLED 27
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 26.9 bits (60), Expect = 9.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 77 FAPKGKLVGICGAVGSGKSALLYAIL 102
P+G L + GA G+GKS L +
Sbjct: 29 LLPRGGLTLLAGAPGTGKSTLALDLA 54
>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK).
Length = 179
Score = 26.9 bits (60), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 83 LVGICGAVGSGKSALLYAILSQLR 106
+VGI G GSGK+ + +QLR
Sbjct: 1 VVGIAGPSGSGKTTFAKKLSNQLR 24
>gnl|CDD|237525 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 27.5 bits (61), Expect = 9.5
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAG 110
I G GSGKS LL I +Q R AG
Sbjct: 461 IFGPTGSGKSTLLALIAAQFRRYAG 485
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this model
include Ras, RhoA, Rab11, translation elongation factor
G, translation initiation factor IF-2, tetratcycline
resistance protein TetM, CDC42, Era, ADP-ribosylation
factors, tdhF, and many others. In some proteins the
domain occurs more than once.This model recognizes a
large number of small GTP-binding proteins and related
domains in larger proteins. Note that the alpha chains
of heterotrimeric G proteins are larger proteins in
which the NKXD motif is separated from the GxxxxGK[ST]
motif (P-loop) by a long insert and are not easily
detected by this model [Unknown function, General].
Length = 162
Score = 27.0 bits (60), Expect = 9.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 84 VGICGAVGSGKSALLYAIL 102
+ I G GKS LL +L
Sbjct: 4 IVIVGDPNVGKSTLLNRLL 22
>gnl|CDD|213209 cd03242, ABC_RecF, ATP-binding cassette domain of RecF. RecF is a
recombinational DNA repair ATPase that maintains
replication in the presence of DNA damage. When
replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 270
Score = 27.3 bits (61), Expect = 9.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAI--LSQLRS 107
RN A +++ F + + + G GK+ LL AI L+ +S
Sbjct: 10 RNYAELELEF---EPGVTVLVGENAQGKTNLLEAISLLATGKS 49
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 27.3 bits (60), Expect = 9.9
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 178 LSGGQKQRVALARAL 192
SGGQ+QR+ +ARAL
Sbjct: 148 FSGGQQQRICIARAL 162
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,507,127
Number of extensions: 1231281
Number of successful extensions: 1761
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1659
Number of HSP's successfully gapped: 568
Length of query: 280
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 184
Effective length of database: 6,679,618
Effective search space: 1229049712
Effective search space used: 1229049712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.3 bits)