RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy850
(280 letters)
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 221 bits (566), Expect = 1e-72
Identities = 69/133 (51%), Positives = 90/133 (67%)
Query: 64 DVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQ 123
L I F P+G LV + G VG GKS+LL A+L+++ G ++ +G+ AYV Q
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQ 73
Query: 124 EAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQK 183
+AWI ND+LR NILFG E Y + CAL D+ ILP GD+TEIGE+G+NLSGGQK
Sbjct: 74 QAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQK 133
Query: 184 QRVALARALYSNS 196
QRV+LARA+YSN+
Sbjct: 134 QRVSLARAVYSNA 146
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 217 bits (555), Expect = 5e-71
Identities = 49/133 (36%), Positives = 78/133 (58%)
Query: 64 DVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQ 123
+ L DINF +G+L+ + G+ G+GK++LL I+ +L + GK+ G ++ SQ
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 76
Query: 124 EAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQK 183
+WI T++ NI+FG ++ RY + C L DI D +GE GI LSGGQ+
Sbjct: 77 FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 136
Query: 184 QRVALARALYSNS 196
R++LARA+Y ++
Sbjct: 137 ARISLARAVYKDA 149
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 215 bits (549), Expect = 2e-69
Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 5/182 (2%)
Query: 15 SSAVSIAGGSFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDI 74
++ V + + W+ + +++ SNG++S + L DI
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQNNN----NRKTSNGDDSLSFSNFSLLGTPVLKDI 57
Query: 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRH 134
NF +G+L+ + G+ G+GK++LL I+ +L + GK+ G ++ SQ +WI T++
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKE 117
Query: 135 NILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYS 194
NI+ G ++ RY + C L DI D +GE GI LSGGQ+ R++LARA+Y
Sbjct: 118 NII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 176
Query: 195 NS 196
++
Sbjct: 177 DA 178
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 99.6 bits (249), Expect = 7e-24
Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 37/159 (23%)
Query: 64 DVERNIALVDINFFAPKGKLVGICGAVGSGKSALL------YAI---------------- 101
+ AL ++F P+GK V + G GSGKS + Y +
Sbjct: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411
Query: 102 LSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIH 161
L+ LR A VSQ + NDT+ +NI + E R + + A
Sbjct: 412 LTNLRRH---------FALVSQNVHLFNDTIANNIAYAAEGEYTR--EQIEQAARQAHAM 460
Query: 162 --I--LPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196
I +P G T IGE G +LSGGQ+QRVA+ARAL ++
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA 499
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 98.8 bits (247), Expect = 1e-23
Identities = 51/153 (33%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALL------YAI----------------LSQLRS 107
AL +IN P GK V + G GSGKS + Y I L+ LR+
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417
Query: 108 TAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIH--I--L 163
A VSQ + NDT+ +NI + E R + + A I +
Sbjct: 418 Q---------VALVSQNVHLFNDTVANNIAYARTEEYSR--EQIEEAARMAYAMDFINKM 466
Query: 164 PGGDQTEIGERGINLSGGQKQRVALARALYSNS 196
G T IGE G+ LSGGQ+QR+A+ARAL +S
Sbjct: 467 DNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 499
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 93.3 bits (233), Expect = 6e-23
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 37/156 (23%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAI----------------------LS 103
+ L DI+F A ++ G G GKS + + L
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 104 QLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIH-- 161
RS G +VSQ++ I T+R N+ +G + + L+
Sbjct: 73 NWRSQIG---------FVSQDSAIMAGTIRENLTYGLEGDYTD--EDLWQVLDLAFARSF 121
Query: 162 I--LPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
+ +P TE+GERG+ +SGGQ+QR+A+ARA N
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 91.8 bits (229), Expect = 2e-22
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 38/156 (24%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSAL------LYAI----------------LS 103
+ + L +IN +G+++GI G GSGKS L Y +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 104 QLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIH-- 161
LR G V Q+ + N ++ NI P + + A H
Sbjct: 80 WLRRQVG---------VVLQDNVLLNRSIIDNISLANPGMSV---EKVIYAAKLAGAHDF 127
Query: 162 I--LPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
I L G T +GE+G LSGGQ+QR+A+ARAL +N
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 91.9 bits (229), Expect = 3e-22
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 38/158 (24%)
Query: 63 EDVERNIALVDINFFAPKGKLVGICGAVGSGKS---ALLY-------AI----------- 101
+ L INFF P G + G GSGKS LLY I
Sbjct: 29 KQTNHRT-LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYN 87
Query: 102 LSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIH 161
+ +RS G V Q+ + N+T+++NIL+G+ + + + ++
Sbjct: 88 RNSIRSIIG---------IVPQDTILFNETIKYNILYGKLDATD---EEVIKATKSAQLY 135
Query: 162 --I--LPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
I LP T +G +G+ LSGG++QR+A+AR L +
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 91.1 bits (227), Expect = 1e-21
Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 39/155 (25%)
Query: 64 DVERNIALVDINFFAPKGKLVGICGAVGSGKS---ALLY--------AI----------- 101
R L D++F G+ + + G G+GKS LL+ I
Sbjct: 64 ADGRET-LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT 122
Query: 102 LSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIH 161
+ LRS G V Q+ + NDT+ NI +G + A IH
Sbjct: 123 QASLRSHIG---------VVPQDTVLFNDTIADNIRYGRVTAGN---DEVEAAAQAAGIH 170
Query: 162 --I--LPGGDQTEIGERGINLSGGQKQRVALARAL 192
I P G +T++GERG+ LSGG+KQRVA+AR +
Sbjct: 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTI 205
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 87.2 bits (217), Expect = 2e-20
Identities = 49/149 (32%), Positives = 63/149 (42%), Gaps = 31/149 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKS---ALLYAILSQLR---STAGKLSREGT------ 117
L + F GK+ + G GSGKS ALL T GK+ +G
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL------QNLYQPTGGKVLLDGEPLVQYD 87
Query: 118 -------CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIH--I--LPGG 166
A V QE + + R NI +G P + + A+ + H I P G
Sbjct: 88 HHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM--EEITAVAMESGAHDFISGFPQG 145
Query: 167 DQTEIGERGINLSGGQKQRVALARALYSN 195
TE+GE G LSGGQ+Q VALARAL
Sbjct: 146 YDTEVGETGNQLSGGQRQAVALARALIRK 174
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 89.7 bits (223), Expect = 3e-20
Identities = 44/151 (29%), Positives = 58/151 (38%), Gaps = 38/151 (25%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKS---ALL---YAI----------------LSQLRST 108
L +N G+ V + G G GKS L+ Y + LR
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465
Query: 109 AGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIH--I--LP 164
G VSQE + T+ NI +G + + + I LP
Sbjct: 466 IG---------VVSQEPVLFATTIAENIRYGREDVTM---DEIEKAVKEANAYDFIMKLP 513
Query: 165 GGDQTEIGERGINLSGGQKQRVALARALYSN 195
T +GERG LSGGQKQR+A+ARAL N
Sbjct: 514 HQFDTLVGERGAQLSGGQKQRIAIARALVRN 544
Score = 86.6 bits (215), Expect = 2e-19
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 40/151 (26%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKS---ALL---Y-----AI-----------LSQLRS 107
L ++ KG+ + + G+ G GKS LL Y ++ + LR+
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 108 TAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFE--PQRYYKTLYNCALNTDIH--I- 162
VSQE + + ++ NI +G+ + + A +IH I
Sbjct: 1108 ---------QLGIVSQEPILFDCSIAENIAYGDNSRVVSY---EEIVRAAKEANIHQFID 1155
Query: 163 -LPGGDQTEIGERGINLSGGQKQRVALARAL 192
LP T +G++G LSGGQKQR+A+ARAL
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 89.2 bits (222), Expect = 3e-20
Identities = 51/173 (29%), Positives = 66/173 (38%), Gaps = 67/173 (38%)
Query: 63 EDVERNIALVDINFFAPKGKLVGICGAVGSGKS---ALL---YAI--------------- 101
D E I L DIN KG+ V G G GKS L+ Y +
Sbjct: 350 NDNEAPI-LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF 408
Query: 102 -LSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEP------------------F 142
LR+ G V Q+ + +DT++ NIL G P F
Sbjct: 409 LTGSLRNQIG---------LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDF 459
Query: 143 EPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
I LP G TE+GERG+ LSGGQKQR+++AR +N
Sbjct: 460 -----------------IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 495
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 85.0 bits (211), Expect = 8e-19
Identities = 46/149 (30%), Positives = 65/149 (43%), Gaps = 29/149 (19%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKS---ALLYAILSQLR---STAGKLSREGT------ 117
D + P G + + G GSGKS +LL LR +G +S +G
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL------LRLYDPASGTISLDGHDIRQLN 412
Query: 118 -------CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCAL--NTD--IHILPGG 166
VSQE + + ++ NI +G + + A N I P G
Sbjct: 413 PVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQG 472
Query: 167 DQTEIGERGINLSGGQKQRVALARALYSN 195
T +GE+G+ LSGGQKQR+A+ARAL N
Sbjct: 473 FNTVVGEKGVLLSGGQKQRIAIARALLKN 501
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 83.0 bits (206), Expect = 4e-18
Identities = 43/154 (27%), Positives = 57/154 (37%), Gaps = 48/154 (31%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAI----------------------LSQLRS 107
L +NF G LV + G GSGKS L+ I L LR
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 108 TAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPF----EPQRYYKTLYNCALN----TD 159
V QE + + T++ N+ +G E A D
Sbjct: 418 HIS---------AVPQETVLFSGTIKENLKWGREDATDDEIVE--------AAKIAQIHD 460
Query: 160 -IHILPGGDQTEIGERGINLSGGQKQRVALARAL 192
I LP G + + G N SGGQKQR+++ARAL
Sbjct: 461 FIISLPEGYDSRVERGGRNFSGGQKQRLSIARAL 494
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 76.3 bits (188), Expect = 5e-16
Identities = 40/150 (26%), Positives = 58/150 (38%), Gaps = 36/150 (24%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAI---------------------LSQLRSTA 109
L +I+F G+ VG+ G GSGKS LL A L Q R
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRK-- 94
Query: 110 GKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEP---QRYYKTLYNCALNTDIHILPGG 166
+ Q+ +I + T R N+ +P Q +K L + I PG
Sbjct: 95 -AFG------VIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVADEVGLRSVIEQFPGK 144
Query: 167 DQTEIGERGINLSGGQKQRVALARALYSNS 196
+ + G LS G KQ + LAR++ S +
Sbjct: 145 LDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 73.4 bits (181), Expect = 2e-15
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 24/148 (16%)
Query: 60 LKAEDVE-----RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114
L E++ N +NF KG ++ + G G GKS LL +L R GK+
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 115 EGTCAYVSQE-AWITNDTLRHNILFGEPFEPQRY-YKTLYNCALNTDIHI----LPGGDQ 168
+ +V Q + ++ +L G R + + + D + L D
Sbjct: 65 YQSIGFVPQFFSSPFAYSVLDIVLMG------RSTHINTFAKPKSHDYQVAMQAL---DY 115
Query: 169 TEIGE---RGIN-LSGGQKQRVALARAL 192
+ R LSGGQ+Q + +ARA+
Sbjct: 116 LNLTHLAKREFTSLSGGQRQLILIARAI 143
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 67.6 bits (166), Expect = 6e-13
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 42/159 (26%)
Query: 65 VERNIALVDINFFAPKGKLVGICGAVGSGKSALL------Y-----AIL----------- 102
++ L DI F G+ V + G GSGK+ ++ Y IL
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
Query: 103 SQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPF----EPQRYYKTLYNCALNT 158
S LRS+ G V Q+ + + T++ N+ +G P E + K ++
Sbjct: 425 SSLRSSIG---------IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAK-----LTHS 470
Query: 159 D--IHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
D I LP G +T + + G +LS GQ+Q +A+ RA +N
Sbjct: 471 DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 63.9 bits (156), Expect = 9e-12
Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 20/165 (12%)
Query: 39 SKRKKYAAKSKEKSNGEESTHLKAEDVER---NIALVDINFFAPKGKLVGICGAVGSGKS 95
+ + + A +++ N S +++ + L +++ + G G+GK+
Sbjct: 333 ALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKT 392
Query: 96 ALLYAILSQLRSTAGKLSREGTCAYVSQEAWI----TNDTLRHNILFGEPFEPQRYYKTL 151
L+ + L+ G+ + + Q+ T L + G+ PQ +
Sbjct: 393 TLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVV 452
Query: 152 YNCALNTDIHILPGGDQTEIGERGI-NLSGGQKQRVALARALYSN 195
+ +I ++ + +LSGG+ QRVA+ AL
Sbjct: 453 KPLRI------------DDIIDQEVQHLSGGELQRVAIVLALGIP 485
Score = 51.2 bits (123), Expect = 1e-07
Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 30/154 (19%)
Query: 65 VERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124
N + G+++G+ G G GKS L + + + G+ + +
Sbjct: 87 YSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY 146
Query: 125 AWITN-DTLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQT-----EIGER- 174
+ +L + +PQ + N + G+ + E
Sbjct: 147 FRGSELQNYFTKMLEDDIKAIIKPQY----VDNIPRAIKGPVQKVGELLKLRMEKSPEDV 202
Query: 175 -------GIN---------LSGGQKQRVALARAL 192
+ LSGG+ QR A+ +
Sbjct: 203 KRYIKILQLENVLKRDIEKLSGGELQRFAIGMSC 236
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 63.9 bits (156), Expect = 1e-11
Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 18/158 (11%)
Query: 45 AAKSKEKSNGEESTHLKAEDVER---NIALVDINFFAPKGKLVGICGAVGSGKSALLYAI 101
K E+ + E T ++ + + + L KG+++GI G G GK+ + +
Sbjct: 343 FTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKML 402
Query: 102 LSQLRSTAGKLSREGTCAYVSQEAWI----TNDTLRHNILFGEPFEPQRYYKTLYNCALN 157
T GK+ + T AY Q T L I + + L +
Sbjct: 403 AGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462
Query: 158 TDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
+LSGG+ QRVA+A L +
Sbjct: 463 DLYDRNVE-----------DLSGGELQRVAIAATLLRD 489
Score = 48.1 bits (115), Expect = 2e-06
Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 21/143 (14%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127
N ++ G +VGI G G+GK+ + + QL + + V +
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD--NVIRAFRG 161
Query: 128 TND-TLRHNILFGEP---FEPQRYYKTLYNCALNTDIHILPGGDQTE------------- 170
+ GE +PQ Y L +L D+
Sbjct: 162 NELQNYFERLKNGEIRPVVKPQ-YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELEN 220
Query: 171 IGERGI-NLSGGQKQRVALARAL 192
+ +R + LSGG+ QRVA+A AL
Sbjct: 221 VLDRELHQLSGGELQRVAIAAAL 243
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 62.2 bits (152), Expect = 1e-11
Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 57 STHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116
S ++ +DV + L ++ G+++ + G G+GKS LL A ++ + S G + G
Sbjct: 2 SIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTSGKGSIQFAG 60
Query: 117 T-------------CAYVSQEAWITND-TLRHNILFGEPFEPQRYYKTLYNCALNTDIHI 162
AY+SQ+ + H + + + + L + A +
Sbjct: 61 QPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH--DKTRTELLNDVAGALAL-- 116
Query: 163 LPGGDQTEIGERGIN-LSGGQKQRVALARAL 192
+ R N LSGG+ QRV LA +
Sbjct: 117 ------DDKLGRSTNQLSGGEWQRVRLAAVV 141
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 60.8 bits (148), Expect = 1e-10
Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 18/158 (11%)
Query: 45 AAKSKEKSNGEESTHLKAEDVER---NIALVDINFFAPKGKLVGICGAVGSGKSALLYAI 101
K+ E+ E T + + + + L KG+++GI G G GK+ + +
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKML 332
Query: 102 LSQLRSTAGKLSREGTCAYVSQEAWI----TNDTLRHNILFGEPFEPQRYYKTLYNCALN 157
T GK+ + T AY Q T L I + + L +
Sbjct: 333 AGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII 392
Query: 158 TDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
LSGG+ QRVA+A L +
Sbjct: 393 DLYDREVN-----------ELSGGELQRVAIAATLLRD 419
Score = 36.1 bits (84), Expect = 0.010
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 177 NLSGGQKQRVALARAL 192
+LSGG+ QRVA+A AL
Sbjct: 158 HLSGGELQRVAIAAAL 173
Score = 35.0 bits (81), Expect = 0.022
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT 117
N ++ +G +VGI G G+GKS + + QL +
Sbjct: 34 NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 60.0 bits (146), Expect = 2e-10
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW 126
+ LV N A +G+++GI G G GK+ ++ ++ + G ++ E +
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 127 ITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI-NLSGGQKQR 185
N + + + + +++ + E + +LSGG+ Q+
Sbjct: 340 FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL------HRLLESNVNDLSGGELQK 393
Query: 186 VALARALYSN 195
+ +A L
Sbjct: 394 LYIAATLAKE 403
Score = 52.0 bits (125), Expect = 7e-08
Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 34/149 (22%)
Query: 70 ALVDINFFAPK-GKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWIT 128
PK ++G+ G G GK+ +L + ++ G + + V +
Sbjct: 13 GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKR---- 68
Query: 129 NDTLRHNIL---FGEPFE--------PQRYYKTLYNCALNTDIHILPGGDQTE------- 170
R + F E + Q Y + T IL D+
Sbjct: 69 ---FRGKEIYNYFKELYSNELKIVHKIQ-YVEYASKFLKGTVNEILTKIDERGKKDEVKE 124
Query: 171 ------IGERGI-NLSGGQKQRVALARAL 192
+ + LSGG QR+ +A +L
Sbjct: 125 LLNMTNLWNKDANILSGGGLQRLLVAASL 153
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 56.5 bits (137), Expect = 1e-09
Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 24/156 (15%)
Query: 60 LKAEDV----ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
++ + + + L I++ KG + G G+GK+ LL + + +T+G ++
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 116 GTC---------------AYVSQE---AWITNDTLRHNILFGEPFEPQRYYKTLYNCALN 157
G +VS + + + ++ G F+ Y+ + + N
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISG-AFKSIGVYQDIDDEIRN 140
Query: 158 TDIHILPGGDQTEIGERGI-NLSGGQKQRVALARAL 192
+L + ++ I LS G+KQRV +ARAL
Sbjct: 141 EAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL 176
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 55.8 bits (135), Expect = 2e-09
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 27/141 (19%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------- 117
+L +IN G+ V I G GSGK+ LL AI S L +G + G
Sbjct: 16 YERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAI-SGLLPYSGNIFINGMEVRKIRNY 73
Query: 118 CAYVSQ--EAWITNDTLRHNILFG---EPFEPQRYYKTLYNCALNTDIHILPGGDQTEIG 172
Y + EA+ T+ + + + + + L L EI
Sbjct: 74 IRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE-----------EIL 122
Query: 173 ERGIN-LSGGQKQRVALARAL 192
R + LS GQ V + AL
Sbjct: 123 RRKLYKLSAGQSVLVRTSLAL 143
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 54.9 bits (133), Expect = 5e-09
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 36/157 (22%)
Query: 60 LKAEDV-----ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114
LK E++ + AL IN +G++ I G G GKS L L+ ++G++
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 115 EGTCAYVSQEAWITNDTLRHN--ILFGEPFEPQRYYKTLYNCALNTDIHILP---GGDQT 169
+ S++ + LR + I+F +P + Q + ++Y D+ +
Sbjct: 68 DNKPIDYSRKGIM---KLRESIGIVFQDP-DNQLFSASVYQ-----DVSFGAVNMKLPED 118
Query: 170 EIGER--------GI---------NLSGGQKQRVALA 189
EI +R GI LS GQK+RVA+A
Sbjct: 119 EIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 155
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 52.9 bits (128), Expect = 1e-08
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 26/139 (18%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG--------TCA 119
L I KG +V G G GK+ LL I + L+ G++ G
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 81
Query: 120 YVSQEAWITND-TLRHNILF-----GEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGE 173
++ +E + ++ + G L + + ++ +
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------------LDLKK 129
Query: 174 RGINLSGGQKQRVALARAL 192
+ LS G +RV LA L
Sbjct: 130 KLGELSQGTIRRVQLASTL 148
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 52.6 bits (127), Expect = 3e-08
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 29/139 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG----------TCA 119
AL +++ +G+ + + G GSGKS LL + + T+G + +G
Sbjct: 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81
Query: 120 YVSQ--EAWITNDTLRHNILFG------EPFEPQRYYKTLYNCALNTDIHILPGGDQTEI 171
Q E + + + F + K + L D
Sbjct: 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGL----------DFDSF 131
Query: 172 GERG-INLSGGQKQRVALA 189
+R LSGG+K+RVA+A
Sbjct: 132 KDRVPFFLSGGEKRRVAIA 150
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 51.8 bits (125), Expect = 5e-08
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-RSTAGKLSREGTCAYVSQEAWIT 128
L IN +G++V + G GSGKS L + + L G++ +G +++ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL-NLLEDFDEGEIIIDGI-NLKAKDTNL- 95
Query: 129 NDTLRHNILFGEPFEPQRY----YKT-LYNCALN-TDIHILPGGDQTEIG----ER-GI- 176
+ +R + G F QR+ + T L N L + P ++ G+
Sbjct: 96 -NKVREEV--GMVF--QRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK 150
Query: 177 --------NLSGGQKQRVALARAL 192
+LSGGQ QRVA+ARAL
Sbjct: 151 DKAHAYPDSLSGGQAQRVAIARAL 174
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 52.7 bits (126), Expect = 5e-08
Identities = 31/128 (24%), Positives = 47/128 (36%), Gaps = 15/128 (11%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG-TCAYVSQE--AWI 127
L + + GICG G GKS L+ AI + G ++E YV +
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRTVYVEHDIDGTH 508
Query: 128 TNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVA 187
++ ++ + + L I G I LSGG K ++A
Sbjct: 509 SDTSVLDFVFESGVGTKEAIKDKL----------IEFGFTDEMIAMPISALSGGWKMKLA 558
Query: 188 LARALYSN 195
LARA+ N
Sbjct: 559 LARAVLRN 566
Score = 44.6 bits (105), Expect = 2e-05
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 46 AKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL 105
K+K+K+ + + + DINF + + G G+GKS L+ + +L
Sbjct: 664 VKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723
Query: 106 RSTAGKLSREGTC--AYVSQEA 125
T+G++ C AY+ Q A
Sbjct: 724 LPTSGEVYTHENCRIAYIKQHA 745
Score = 37.7 bits (87), Expect = 0.004
Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 63 EDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVS 122
E R IA + +G + + + R S
Sbjct: 796 EGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHS 855
Query: 123 QEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQ 182
+ + P + + L+ +I + I LSGGQ
Sbjct: 856 KMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI-----VSHSRIR----GLSGGQ 906
Query: 183 KQRVALARALYSNSFEQQTFHFLVL 207
K ++ LA + H +VL
Sbjct: 907 KVKLVLAAGTWQRP------HLIVL 925
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 6e-08
Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 39/191 (20%)
Query: 24 SFLWDTLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVER-------NIALVDINF 76
FL + + + Y + N + +V R AL+++
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQPYLKLRQALLELR- 148
Query: 77 FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNI 136
K V I G +GSGK+ + L S + C + W+
Sbjct: 149 ---PAKNVLIDGVLGSGKTWV---ALDVCL------SYKVQCKMDFKIFWLN-------- 188
Query: 137 LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNS 196
P+ + L D + D + + I+ S + R L Y N
Sbjct: 189 -LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENC 246
Query: 197 FEQQTFHFLVL 207
LVL
Sbjct: 247 -------LLVL 250
Score = 36.0 bits (82), Expect = 0.014
Identities = 43/327 (13%), Positives = 84/327 (25%), Gaps = 94/327 (28%)
Query: 27 WDTLLDGSKT------SGSKRKKYAAKSKEKSNG-------EESTHLKAEDVE------- 66
W + D S S + KSK N + + A ++
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ-LRSTAGKLSRE---------G 116
R + D A + ++ + ++L + L L RE
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 117 TCAYVSQEAWITNDTLRH--------------NILFGEPFEPQRYYKTLYNCALNTDIHI 162
A ++ T D +H N+L EP E ++ + L HI
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLS--VFPPSAHI 387
Query: 163 -----------LPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211
+ D + + S +KQ ++ S +L L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--------IYLELKVKL 439
Query: 212 VSLQSI--LLMEEVNVYVSKPIDKSSAVSIAGGSF--------------LWDTL----LD 251
+ ++ +++ N+ + D + + LD
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 252 ----SSK--TSGSNIAGGSFLWDTLLD 272
K + + +TL
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQ 526
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 49.8 bits (120), Expect = 2e-07
Identities = 48/177 (27%), Positives = 68/177 (38%), Gaps = 50/177 (28%)
Query: 48 SKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-R 106
+K GEE + AL ++N +G+ V I G GSGKS +L I+ L +
Sbjct: 8 TKTYKMGEEIIY----------ALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDK 56
Query: 107 STAGKLSREGTCAYVS-----QEAWITNDTLRHNILFGEPFEPQRY----YKT-LYNCAL 156
T G++ + + + I D G F Q++ T L N L
Sbjct: 57 PTEGEVYIDNI--KTNDLDDDELTKIRRDK------IGFVF--QQFNLIPLLTALENVEL 106
Query: 157 NTDIHILPGGDQTE-------------IGERGIN-----LSGGQKQRVALARALYSN 195
E + ER N LSGGQ+QRVA+ARAL +N
Sbjct: 107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 50.4 bits (121), Expect = 2e-07
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 51/168 (30%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-RSTAGKLSREGT-CAYVSQEAWI 127
AL +++ P G++ G+ GA G+GKS L+ + + L R T G + +G +S+
Sbjct: 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPTEGSVLVDGQELTTLSESELT 101
Query: 128 TNDTLRHNI--------LFGEPFEPQRYYKTLY-NCALNTDIHILPGGDQTEIGER---- 174
R I L +T++ N AL ++ + E+ R
Sbjct: 102 K---ARRQIGMIFQHFNLLSS--------RTVFGNVALPLELD---NTPKDEVKRRVTEL 147
Query: 175 ----GI---------NLSGGQKQRVALARALYSNSFEQQTFHFLVLLC 209
G+ NLSGGQKQRVA+ARAL SN VLLC
Sbjct: 148 LSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP--------KVLLC 187
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 48.7 bits (117), Expect = 4e-07
Identities = 46/151 (30%), Positives = 64/151 (42%), Gaps = 36/151 (23%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-RSTAGKLSREGTCAYVS-----Q 123
L I+ KG+ V I GA GSGKS LLY IL L T GK+ EG V +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGK--EVDYTNEKE 75
Query: 124 EAWITNDTL-----RHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTE-------- 170
+ + N L H ++ P+ L N + P + E
Sbjct: 76 LSLLRNRKLGFVFQFHYLI------PE--LTALENVIVPMLKMGKPKKEAKERGEYLLSE 127
Query: 171 --IGERGIN----LSGGQKQRVALARALYSN 195
+G++ LSGG++QRVA+ARAL +
Sbjct: 128 LGLGDKLSRKPYELSGGEQQRVAIARALANE 158
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 48.7 bits (117), Expect = 5e-07
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 39/154 (25%)
Query: 71 LVDINFFAPKGKLVGICGAVGSGKSALLYAILSQL-RSTAGKLSREGTCAYVSQEAWITN 129
L ++ A G ++ I G+ GSGKS L I + L + + G + G + ++
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCI-NFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 130 --------DTLRHNILFGEPFEPQRY----YKT-LYNCALNTDIHILPGGDQTEIGERGI 176
LR + F Q + + T L N I +L G + + ER +
Sbjct: 81 KVADKNQLRLLRTRL--TMVF--QHFNLWSHMTVLENVME-APIQVL-GLSKHDARERAL 134
Query: 177 NL------------------SGGQKQRVALARAL 192
SGGQ+QRV++ARAL
Sbjct: 135 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL 168
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 46.4 bits (111), Expect = 4e-06
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QR ALARAL
Sbjct: 139 LSGGQQQRAALARAL 153
Score = 28.3 bits (64), Expect = 3.1
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 57 STHLKAEDVER----NIALVDINFFAPKGKLVGICGAVGSGKSALLYAI 101
+ L + + L DI+ G+++ I GA G GK+ LL +
Sbjct: 2 TAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCL 50
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 46.0 bits (110), Expect = 5e-06
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 178 LSGGQKQRVALARAL 192
LSGG++QRVALARAL
Sbjct: 128 LSGGEQQRVALARAL 142
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 45.7 bits (109), Expect = 8e-06
Identities = 14/15 (93%), Positives = 15/15 (100%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QRVALARAL
Sbjct: 146 LSGGQQQRVALARAL 160
Score = 28.4 bits (64), Expect = 2.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALL 98
++ ++F +G++VG+ G GSGK+ +L
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTIL 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 8e-06
Identities = 57/308 (18%), Positives = 86/308 (27%), Gaps = 104/308 (33%)
Query: 7 YVSKPIDKSSAVSIAG----------GSFLWD--------TLLDGSKTSGSKRKK----- 43
YVS ++ S +L LL + T+ K K+
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 44 YAAKS---KEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKS----- 95
A+ + S +A V A +LV I G G G +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRA--VGEGNA-----------QLVAIFG--GQGNTDDYFE 171
Query: 96 --ALLY----AILSQLRSTAGK----LSREGTCA--YVSQ----EAWITNDTLRHNI--L 137
LY ++ L + + L R A +Q W+ N + + L
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 138 FGEPFE-P-----Q--RYYKTLYNCALNTDIHILPGGDQTEIGERGINLSG--GQKQRVA 187
P P Q Y T PG E+ L G G Q +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFT------PG----ELRSY---LKGATGHSQGLV 278
Query: 188 LARALYS----NSFEQQTFHFLVLL------C----PCVSLQSILLMEEVNVYVSKPIDK 233
A A+ SF + +L C P SL +L + + P
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--- 335
Query: 234 SSAVSIAG 241
S +SI+
Sbjct: 336 SPMLSISN 343
Score = 44.7 bits (105), Expect = 2e-05
Identities = 53/272 (19%), Positives = 80/272 (29%), Gaps = 93/272 (34%)
Query: 16 SAVSIA-GGSFLWDTLLDGSKTS-------GSKRKKYA----------AKSKEKSNGEES 57
+AV+IA S W++ + + G + + S E + G S
Sbjct: 279 TAVAIAETDS--WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 58 -----THLKAEDVERNIALVDINFFAPKGKLVGI---CGA---VGSGKSALLYAILSQLR 106
++L E V+ + N P GK V I GA V SG LY + LR
Sbjct: 337 PMLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 107 STAG---------KLSREG----------TCAYVSQ-----EAWITNDTLRHNILF---- 138
S + S I D +++N+ F
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 139 -GEP-FEP-----QRYYKT-----LYNC----------ALNTDI-HIL---PGGDQTEIG 172
P ++ R + +C HIL PGG + +G
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA-SGLG 513
Query: 173 ERGINLSGGQKQRVALARALYSNS-----FEQ 199
G RV +A L N F+Q
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 38.9 bits (90), Expect = 0.002
Identities = 45/239 (18%), Positives = 71/239 (29%), Gaps = 80/239 (33%)
Query: 29 TLLDGSKTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICG 88
T+ G + R+ Y+A E + + + E N F + KG L
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFE-TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL----- 1726
Query: 89 AVGSGKS------ALL---YAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
+ AL A L+S G + + T A H++ G
Sbjct: 1727 -----SATQFTQPALTLMEKAAFEDLKS-KGLIPADATFA-------------GHSL--G 1765
Query: 140 EPFEPQRYYKTLYNCALNTDIHILPGGDQTEI-GERGINLSGGQKQRVALARALYS---- 194
E Y AL + ++ E+ RG+ R L R+ Y
Sbjct: 1766 E------Y------AALASLADVMSIESLVEVVFYRGM-TMQVAVPRDELGRSNYGMIAI 1812
Query: 195 ------NSFEQQTFHFLVLLCPCVSLQSILLMEEVN------VYVSKPIDKSSAVSIAG 241
SF Q+ + + V ++ L+E VN YV AG
Sbjct: 1813 NPGRVAASFSQEALQY---VVERVGKRTGWLVEIVNYNVENQQYV-----------AAG 1857
Score = 28.5 bits (63), Expect = 2.8
Identities = 29/200 (14%), Positives = 45/200 (22%), Gaps = 91/200 (45%)
Query: 95 SALLYAILSQLRSTAGKLSREGT---------------CA----YVSQEAWITNDTLRHN 135
+ I SQL+ K+ E T YVS +
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 136 IL---FGEPFEPQRYYKTLYNCALNTDIH----ILPGGDQTEIGERGINLSGGQKQRVAL 188
+L E FE Y + DIH L + T + + L
Sbjct: 83 VLNLCLTE-FE-NCYLE-------GNDIHALAAKLLQENDTTLVKTK-----------EL 122
Query: 189 ARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEEVNVYVSKPIDK--SSAVSIAGGSFLW 246
+ + +P DK +SA
Sbjct: 123 IKNYI----------------------------TARIMAKRPFDKKSNSA---------- 144
Query: 247 DTLLDSSKTSGSNIA---GG 263
L + + + GG
Sbjct: 145 --LFRAVGEGNAQLVAIFGG 162
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 44.1 bits (105), Expect = 1e-05
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 178 LSGGQKQRVALARAL 192
LSGG++QRVALARAL
Sbjct: 127 LSGGERQRVALARAL 141
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 42.9 bits (102), Expect = 5e-05
Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 31/143 (21%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK-------LSREGTCA--- 119
L I+F +G++ G+ G G+GK+ L I + ++ ++G + E
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 120 --YVSQEAWITND-TLRHNILF-----GEPFE--PQRYYKTLYNCALNTDIHILPGGDQT 169
Y+ +EA + + F + + L I
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS---- 145
Query: 170 EIGERGINLSGGQKQRVALARAL 192
S G +++ +ARAL
Sbjct: 146 -------TYSKGMVRKLLIARAL 161
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 41.9 bits (99), Expect = 1e-04
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 178 LSGGQKQRVALARAL 192
LSG Q+QRVALARAL
Sbjct: 141 LSGAQQQRVALARAL 155
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 40.9 bits (97), Expect = 2e-04
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116
A+ I+ P+G++V + GA G+GK+ L AI +R+ GK+ G
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Score = 29.0 bits (66), Expect = 1.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 178 LSGGQKQRVALARALYSN 195
LSGG++Q +A+ RAL S
Sbjct: 140 LSGGEQQMLAIGRALMSR 157
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 41.0 bits (97), Expect = 3e-04
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QRVA+ARAL
Sbjct: 134 LSGGQQQRVAIARAL 148
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 39.9 bits (94), Expect = 5e-04
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 177 NLSGGQKQRVALARAL 192
LSGGQ+QRVAL RA+
Sbjct: 139 ELSGGQRQRVALGRAI 154
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 39.9 bits (94), Expect = 6e-04
Identities = 14/15 (93%), Positives = 15/15 (100%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QRVALARAL
Sbjct: 134 LSGGQQQRVALARAL 148
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 39.9 bits (94), Expect = 6e-04
Identities = 12/15 (80%), Positives = 15/15 (100%)
Query: 178 LSGGQKQRVALARAL 192
LSGGQ+QRVA+ARA+
Sbjct: 142 LSGGQRQRVAVARAI 156
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 37.1 bits (87), Expect = 0.004
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 178 LSGGQKQRVALARA 191
LSGGQ+QRVA+ R
Sbjct: 134 LSGGQRQRVAIGRT 147
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 36.1 bits (84), Expect = 0.007
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 58 THLKAEDV-ERNIALVDIN--FFAPKGKL-VGICGAVGSGKSALLYAILSQLRS 107
+ +D+ N L + N G + V I GA+GSGK+ L+ + ++ +
Sbjct: 3 EYELNQDLLAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGN 56
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 35.7 bits (83), Expect = 0.010
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 66 ERNIALVDIN--FFAPKGKL-VGICGAVGSGKSALLYAILSQLRS 107
+ N L D N G + GA+GSGK+ L+ ++ L+
Sbjct: 20 KANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 33.9 bits (77), Expect = 0.047
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAIL 102
R+ + + F +G + I G GSGKS+LL AIL
Sbjct: 12 RSHSDTVVEF--KEG-INLIIGQNGSGKSSLLDAIL 44
Score = 28.1 bits (62), Expect = 3.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 178 LSGGQKQRVALARALYSNSFEQQTFHFLVL 207
LSGG++ + LA L + + L+L
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLIL 278
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 33.5 bits (77), Expect = 0.050
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPF 142
++GI G SGK+ L + LR + + + I R++ E F
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLR------EQGISVCVFHMDDHIVERAKRYHTGNEEWF 77
Query: 143 E 143
E
Sbjct: 78 E 78
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 33.7 bits (77), Expect = 0.051
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 79 PKGKLVGICGAVGSGKS--ALLYAILSQLRSTAGKLSREGTCAYVSQE 124
+ G +GK+ + + +QL G G ++ E
Sbjct: 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP--GGKIIFIDTE 165
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 34.0 bits (79), Expect = 0.051
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 39 SKRKKYAAKSKEKSNGEESTHLKAEDV-ERNIALVDINFFAPKGKLVGICGAVGSGKSAL 97
+ + + G L+ V N+ +D+ F P G + + G GSGKS L
Sbjct: 486 FADRHTEPHTPREPAG----WLELNGVTRNNLDNLDVRF--PLGVMTSVTGVSGSGKSTL 539
Query: 98 LYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
+ L + + A + E + +
Sbjct: 540 VSQAL--VDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGD 579
Score = 30.6 bits (70), Expect = 0.60
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 9/38 (23%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSAL----LYA 100
++I+ V + P+ LV G GSGKS+L LYA
Sbjct: 27 KDIS-VKV----PRDALVVFTGVSGSGKSSLAFGTLYA 59
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 32.9 bits (75), Expect = 0.072
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTA 109
K ++GI G SGK+ L + L + +
Sbjct: 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCS 49
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 33.2 bits (75), Expect = 0.074
Identities = 9/76 (11%), Positives = 18/76 (23%), Gaps = 12/76 (15%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQ 145
G G+GK+ + I +++ + T PQ
Sbjct: 50 FLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT------------PQ 97
Query: 146 RYYKTLYNCALNTDIH 161
+L +
Sbjct: 98 AVLSSLAGKLTGFSVP 113
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 32.9 bits (75), Expect = 0.078
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC 118
L+G+ G SGKS++ I+ L ++
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVV 59
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 32.8 bits (75), Expect = 0.079
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 66 ERNIALVDINFFAPKGK--LVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC 118
+ L N + + L+G+ G SGKS + I+ L + +
Sbjct: 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV 62
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 32.9 bits (75), Expect = 0.11
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 75 NFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK 111
+ + + K + + G +G GKS LL A+ +L G
Sbjct: 146 QYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV 182
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 32.7 bits (74), Expect = 0.13
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 67 RNIALVDINFFAPKGKL----VGICGAVGSGKSALLYAILSQLRST 108
R+ LV ++ + G I G+GKS +L +
Sbjct: 17 RDGGLVLVDIWKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQ 62
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 32.5 bits (74), Expect = 0.13
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 72 VDINFFAPKGKLVGICGAVGSGKSALLYAI 101
VDI F + + + G G+GKS+L AI
Sbjct: 17 VDIEF---QSGITVVEGPNGAGKSSLFEAI 43
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 32.2 bits (73), Expect = 0.16
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124
P+G V + G G+GK+ + + G+ +V+ E
Sbjct: 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE-----PGVFVTLE 68
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 32.0 bits (73), Expect = 0.17
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 79 PKGKLVGICGAVGSGKS--ALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLR 133
+ G GSGK+ ++ QL G L G Y+ T T R
Sbjct: 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGL--SGKAVYID-----TEGTFR 154
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 31.9 bits (72), Expect = 0.19
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 79 PKGKLVGICGAVGSGKS--ALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLR 133
+ + G GSGK+ A A++ QL G L G+ ++ T +T R
Sbjct: 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL--NGSVIWID-----TENTFR 178
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 31.6 bits (72), Expect = 0.19
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRSTAGK 111
LV + GA GSGKS L + + L +
Sbjct: 24 LVALSGAPGSGKSTLSNPLAAALSAQGLP 52
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 31.9 bits (71), Expect = 0.19
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRSTAGK 111
+ G GSGKS I + L G
Sbjct: 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGG 61
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 31.4 bits (72), Expect = 0.22
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 78 APKGKLVGICGAVGSGKSALLYAILSQL 105
APK ++GI G SGK+ L A+ L
Sbjct: 3 APKPFVIGIAGGTASGKTTLAQALARTL 30
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 31.3 bits (72), Expect = 0.28
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 177 NLSGGQKQRVALARAL 192
LSGGQ + V + RAL
Sbjct: 153 ELSGGQMKLVEIGRAL 168
Score = 27.9 bits (63), Expect = 3.4
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 60 LKAEDVERN----IALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L+ E++ + AL ++ KG + I G GSGKS L+ I L++ G++ E
Sbjct: 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67
Query: 116 GT 117
Sbjct: 68 NK 69
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 31.7 bits (73), Expect = 0.28
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 72 VDINFFAPKGKLVGICGAVGSGKSAL----LYAILSQ 104
V + P G V + G GSGKS L LY L+Q
Sbjct: 341 VSVKI--PLGTFVAVTGVSGSGKSTLVNEVLYKALAQ 375
Score = 27.1 bits (61), Expect = 8.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 178 LSGGQKQRVALARAL 192
LSGG+ QRV LA L
Sbjct: 544 LSGGEAQRVKLAAEL 558
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 30.7 bits (70), Expect = 0.29
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRH 134
+ G G+GKS LL A ++Q L AY+ + D
Sbjct: 41 VWGEEGAGKSHLLQAWVAQA------LEAGKNAAYIDAASMPLTDAAFE 83
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 31.7 bits (73), Expect = 0.29
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 72 VDINFFAPKGKLVGICGAVGSGKSAL----LYAILSQ 104
+D+ P G V + G GSGKS+L LY L
Sbjct: 603 IDVEI--PLGVFVCVTGVSGSGKSSLVMETLYPALMN 637
Score = 30.1 bits (69), Expect = 0.82
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 9/38 (23%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSAL----LYA 100
+NI V I PK +LV I G GSGKS+L +YA
Sbjct: 15 KNIT-VRI----PKNRLVVITGVSGSGKSSLAMDTIYA 47
Score = 27.0 bits (61), Expect = 8.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 178 LSGGQKQRVALARAL 192
LSGG+ QR+ LA L
Sbjct: 806 LSGGEAQRIKLASEL 820
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 31.7 bits (73), Expect = 0.29
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSAL----LYA 100
E N+ VD++ P+ L+ G GSGKS+L ++A
Sbjct: 33 EHNLRSVDLDL--PRDALIVFTGLSGSGKSSLAFDTIFA 69
Score = 30.6 bits (70), Expect = 0.59
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 72 VDINFFAPKGKLVGICGAVGSGKSAL----LYAILSQ 104
+D++F P G L + G GSGKS L L A+L+
Sbjct: 661 IDVSF--PLGVLTSVTGVSGSGKSTLVNDILAAVLAN 695
Score = 27.1 bits (61), Expect = 8.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 178 LSGGQKQRVALARAL 192
LSGG+ QRV LA L
Sbjct: 864 LSGGEAQRVKLASEL 878
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 31.2 bits (71), Expect = 0.30
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124
P+ +V + G G+GK+ L L YV+ E
Sbjct: 21 PERNVVLLSGGPGTGKTIFSQQFLWNG------LKMGEPGIYVALE 60
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 30.5 bits (69), Expect = 0.30
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 178 LSGGQKQRVALARALYSNSFEQQTFHFLVL 207
LSGG++ + LA L + + L+L
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLIL 87
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 30.6 bits (69), Expect = 0.34
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 82 KLVGICGAVGSGKS 95
K++ I G GSGKS
Sbjct: 2 KVILITGMPGSGKS 15
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA
damage, DNA recombinat repair, nucleotide-binding; HET:
DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Length = 400
Score = 31.2 bits (70), Expect = 0.41
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 79 PKGKLVGICGAVGSGKS--ALLYAILSQLRSTAGKLSREGTCAYVSQE 124
G + + G +GKS A+ Q+ G EG C Y+ E
Sbjct: 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG--EGKCLYIDTE 221
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.4 bits (68), Expect = 0.42
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAG 110
+ I G G GK+ L+ I+ +L A
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAI 29
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 30.4 bits (68), Expect = 0.42
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRS 107
+ + G SGK+ L+ ++
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 31.0 bits (69), Expect = 0.42
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGK 111
+ KL I A S K L+ ++ +L +++ +
Sbjct: 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSAR 75
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 30.7 bits (70), Expect = 0.43
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 18/85 (21%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQ 145
+ G V SG++ L++A ++ E Y+ + +
Sbjct: 57 LWGPVKSGRTHLIHAACARA------NELERRSFYIPLG-------IHAS--ISTAL--L 99
Query: 146 RYYKTLYNCALNTDIHILPGGDQTE 170
+ + D+ + G E
Sbjct: 100 EGLEQF-DLICIDDVDAVAGHPLWE 123
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.0 bits (70), Expect = 0.44
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124
K ++ GA G+GK+ L+ + + + + E
Sbjct: 279 FKDSIILATGATGTGKTLLVSRFVENA------CANKERAILFAYE 318
Score = 30.3 bits (68), Expect = 0.69
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124
P G+ + G G+GK+ L G + + +V+ E
Sbjct: 37 PIGRSTLVSGTSGTGKTLFSIQFLY-----NGIIEFDEPGVFVTFE 77
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 30.9 bits (71), Expect = 0.47
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSAL----LYA 100
N+ +D+ P+GKLV + G GSGKS+L +YA
Sbjct: 31 AHNLKNIDVEI--PRGKLVVLTGLSGSGKSSLAFDTIYA 67
Score = 30.9 bits (71), Expect = 0.54
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114
V + P G V + G GSGKS L+ +L ++ A KL R
Sbjct: 643 VSVKI--PLGTFVAVTGVSGSGKSTLVNEVL--YKALAQKLHR 681
Score = 27.1 bits (61), Expect = 9.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 178 LSGGQKQRVALARAL 192
LSGG+ QRV LA L
Sbjct: 846 LSGGEAQRVKLAAEL 860
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 29.9 bits (67), Expect = 0.61
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 17/76 (22%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
L+ + G +GK+ L + L+ +S+ D + + G
Sbjct: 4 TPALIIVTGHPATGKTTL-----------SQALATGLRLPLLSK------DAFKEVMFDG 46
Query: 140 EPFEPQRYYKTLYNCA 155
+ + + + + A
Sbjct: 47 LGWSDREWSRRVGATA 62
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.6 bits (66), Expect = 0.63
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLR 106
++ I G SGK+ L+ ++ LR
Sbjct: 3 LILSIVGTSDSGKTTLITRMMPILR 27
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 30.6 bits (69), Expect = 0.63
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAI 101
I F + +V I G GSGKS++ A+
Sbjct: 20 RIKF---EKGIVAIIGENGSGKSSIFEAV 45
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 30.0 bits (67), Expect = 0.71
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRS 107
++ + G+ G+G S + + R
Sbjct: 7 IISVTGSSGAGTSTVKHTFDQIFRR 31
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 29.7 bits (67), Expect = 0.75
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 61 KAEDVERNIALVDI-----NFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK 111
++V +N AL+ I NF +GK + G+ G GK+ L A L + G
Sbjct: 13 HPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 29.6 bits (67), Expect = 0.77
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 73 DINFFAPKGKLVGICGAVGSGKSALLYAI 101
+ F K + I G GSGKS+LL AI
Sbjct: 18 VVEF---KEGINLIIGQNGSGKSSLLDAI 43
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 30.2 bits (68), Expect = 0.77
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 56 ESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKL 112
EST + + + L+ + + VGI G G GKS + A+ L ++
Sbjct: 55 ESTRPDHREQAQQL-LLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRV 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 29.7 bits (66), Expect = 0.83
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLS 113
+ V + G G GK+ L++ L+S+ +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.4 bits (65), Expect = 0.85
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLR 106
L+ G+GK+ LL ++ L
Sbjct: 7 PLLAFAAWSGTGKTTLLKKLIPALC 31
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 29.3 bits (66), Expect = 0.86
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAI 101
R+ + + F K + I G GSGKS+LL AI
Sbjct: 12 RSHSDTVVEF---KEGINLIIGQNGSGKSSLLDAI 43
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 29.8 bits (66), Expect = 0.99
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAG 110
+ G G+GK+ L + +
Sbjct: 49 LLGRPGTGKTVTLRKLWELYKDKTT 73
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 29.1 bits (65), Expect = 1.0
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEP 141
KL I G G GKS +T +L+ + + A+I D + H ++ G
Sbjct: 3 KLYIITGPAGVGKS-----------TTCKRLAAQ-----LDNSAYIEGDIINHMVVGGYR 46
Query: 142 F 142
Sbjct: 47 P 47
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 29.6 bits (66), Expect = 1.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGK 111
I G G+GK+A++ +LS+L
Sbjct: 50 IYGLTGTGKTAVVKFVLSKLHKKFLG 75
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 29.3 bits (65), Expect = 1.2
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 17/69 (24%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILF 138
G ++ + G GSGKS + A L+ V +D L I
Sbjct: 7 LGGNILLLSGHPGSGKS-----------TIAEALANLPGVPKV----HFHSDDLWGYIKH 51
Query: 139 G--EPFEPQ 145
G +P+ PQ
Sbjct: 52 GRIDPWLPQ 60
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 29.7 bits (66), Expect = 1.2
Identities = 5/77 (6%), Positives = 22/77 (28%), Gaps = 3/77 (3%)
Query: 50 EKSNGEESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTA 109
++ G H++ + + + + + G+ + + A+ + +
Sbjct: 91 IENQGLFKDHVEDVNFQPVKYSALTSN---NEECTAVVARGGTANAIRIAAVDNPVNVNK 147
Query: 110 GKLSREGTCAYVSQEAW 126
V + +
Sbjct: 148 LAQDSINIAQIVPMDGF 164
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain
III (ATPase domain), ATP-binding, cytoplasm, DNA
replication; HET: ADP; 3.00A {Thermotoga maritima} PDB:
2z4r_A*
Length = 440
Score = 29.2 bits (66), Expect = 1.5
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITND---TLRHNILFGEPF 142
I G VG GK+ LL +I + + + + Y++ E + ND +++ L F
Sbjct: 135 IYGGVGLGKTHLLQSIGNYVV----QNEPDLRVMYITSEKF-LNDLVDSMKEGKL--NEF 187
Query: 143 EPQRYYKTLYNCALNTDIHILPGGDQT 169
+ Y+ + L D+ L G
Sbjct: 188 --REKYRKKVDILLIDDVQFLIGKTGV 212
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 29.0 bits (65), Expect = 1.5
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 56 ESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS 107
ES H + + + + L I + +G+ G G+GKS L A L
Sbjct: 32 ESRHPRHQALSTQL-LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 29.1 bits (65), Expect = 1.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 78 APKGKLVGICGAVGSGKSAL 97
K KL+ + GA G+GKS L
Sbjct: 37 HRKEKLLVLMGATGTGKSRL 56
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 29.0 bits (64), Expect = 1.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYV 121
+ G G+GK+A+ +L +L + A L YV
Sbjct: 49 LYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 29.0 bits (65), Expect = 1.9
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLR 106
V I G G GKS L +
Sbjct: 148 GWVTIYGMAGCGKSVLAAEAVRDHS 172
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 28.7 bits (65), Expect = 2.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 91 GSGKSALLYAILSQLRS 107
GSGKS LYA L +L S
Sbjct: 177 GSGKSTTLYAGLQELNS 193
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 28.7 bits (64), Expect = 2.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 84 VGICGAVGSGKSALLYAILSQLRS 107
+ + GA G+GKS LL +
Sbjct: 56 LLVNGATGTGKSVLLRELAYTGLL 79
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 28.6 bits (64), Expect = 2.2
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 56 ESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS 107
ES R++ + + + VGI G G GKS + A+ S L +
Sbjct: 31 ESRRADHRAAVRDL-IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 28.2 bits (62), Expect = 2.5
Identities = 8/78 (10%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
+++ + G +GKS ++ + S L + + + + + G
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 140 EPFEP--QRYYKTLYNCA 155
P +
Sbjct: 62 VSIGPEFRALEGAWAEGV 79
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 28.2 bits (62), Expect = 2.5
Identities = 10/88 (11%), Positives = 20/88 (22%), Gaps = 17/88 (19%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEA---WITNDTLRHNILF 138
+ + I G + GKS L++ +V+ E W +
Sbjct: 3 RRLSIEGNIAVGKSTF-----------VKLLTKTYPEWHVATEPVATWQNIQAAGNQKAC 51
Query: 139 GEPFEP---QRYYKTLYNCALNTDIHIL 163
Y+ +
Sbjct: 52 TAQSLGNLLDMMYREPARWSYTFQTFSF 79
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 28.1 bits (63), Expect = 2.6
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124
P+G + + G G+GK+ +++ L C YV+ E
Sbjct: 21 PQGFFIALTGEPGTGKTIFSLHFIAKG------LRDGDPCIYVTTE 60
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.1 bits (62), Expect = 2.8
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRST 108
K K+V + G G G + + LR
Sbjct: 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKE 30
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 77 FAPKGKLVGICGAVGSGKSALLYAILSQL 105
K K + + G+ G GK+ LL AI ++L
Sbjct: 50 PGKKMKGLYLHGSFGVGKTYLLAAIANEL 78
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 28.4 bits (62), Expect = 2.9
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW 126
V + GA GKS L+ +L + + ++ +W
Sbjct: 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSW 112
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 3.6
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 35 KTSGSKRKKYAAKSKEKSNGEESTHLKAEDVERNIA 70
+ SK + + K K + EE ++E VE+N
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 28.1 bits (62), Expect = 3.6
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 74 INFFAPKGKLVGICGAVGSGKSALLYAILSQLRS 107
+ K V I G G+G + L I+ L S
Sbjct: 38 MKAIKEKKHHVTINGPAGTGATTLTKFIIEALIS 71
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 27.9 bits (62), Expect = 3.8
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 56 ESTHLKAEDVERNI---------ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLR 106
ESTH + +++ + + N P VG+ G G+GKS + L
Sbjct: 40 ESTHSRKKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLT 99
Query: 107 STAGKL 112
KL
Sbjct: 100 ERGHKL 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 27.8 bits (61), Expect = 4.1
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 7/92 (7%)
Query: 68 NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRS---TAGKLSREGTCAYVSQE 124
L D K+V + G G GK+ + + ++ G+ + E +
Sbjct: 148 RRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANAS 207
Query: 125 AWITNDTLR----HNILFGEPFEPQRYYKTLY 152
I + L + +K L+
Sbjct: 208 GIIVATKDNVRTVDSFLMNYGKGARCQFKRLF 239
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 27.3 bits (60), Expect = 5.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLR 106
PK + G + SGK+ L A+L
Sbjct: 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 27.6 bits (60), Expect = 6.0
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVS 122
+ G G VG GK+ L + ++ A K AYV+
Sbjct: 54 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 27.1 bits (60), Expect = 6.4
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 80 KGKLVGICGAVGSGKS-ALLYAILSQLRSTAGK 111
KG + G+GK+ L IL++ +
Sbjct: 7 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLR 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+,
helix-turn-helix, nucleotide-binding, DNA binding, REP
initiation, DNA binding protein; HET: ADP; 2.70A
{Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A*
2hcb_A*
Length = 324
Score = 27.1 bits (61), Expect = 6.9
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITND---TLRHNILFGEPF 142
I G+VG+GK+ LL A ++ + ++ Y S + + L+ + F
Sbjct: 42 IYGSVGTGKTHLLQAAGNEAKKRGYRV------IYSSADDF-AQAMVEHLKKGTI--NEF 92
Query: 143 EPQRYYKTLYNCALNTDIHILPGGDQT 169
+ YK++ + L D+ L G ++T
Sbjct: 93 --RNMYKSV-DLLLLDDVQFLSGKERT 116
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 26.8 bits (58), Expect = 7.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 82 KLVGICGAVGSGK 94
KL+ + G SGK
Sbjct: 2 KLIFLSGVKRSGK 14
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 26.8 bits (60), Expect = 7.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAI-LSQLRS 107
RN+A +NF + GI G G+GK+ LL A L+
Sbjct: 15 RNLAPGTLNF---PEGVTGIYGENGAGKTNLLEAAYLALTGQ 53
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 27.1 bits (59), Expect = 8.0
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK 111
L I +G V I G +GK++L + S
Sbjct: 127 MLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAY 168
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 26.6 bits (58), Expect = 8.9
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLS 113
K+ + G G GKS +L + L +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 26.9 bits (58), Expect = 9.8
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 84 VGICGAVGSGKSALLYAIL 102
+ + G + GKS L A++
Sbjct: 72 LLVLGDMKRGKSTFLNALI 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,961,053
Number of extensions: 221040
Number of successful extensions: 614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 181
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.1 bits)