RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy850
(280 letters)
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 120 bits (302), Expect = 2e-33
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
L DIN KG+ V G G GKS L+ I T+G++ +G
Sbjct: 33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92
Query: 118 -CAYVSQEAWITNDTLRHNILFGEPFEP-QRYYKTLYNCALNTDIHILPGGDQTEIGERG 175
V Q+ + +DT++ NIL G P + + + I LP G TE+GERG
Sbjct: 93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 152
Query: 176 INLSGGQKQRVALARALYSNS 196
+ LSGGQKQR+++AR +N
Sbjct: 153 VKLSGGQKQRLSIARIFLNNP 173
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 119 bits (299), Expect = 1e-32
Identities = 49/128 (38%), Positives = 77/128 (60%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L +IN KG+++ I G+ GSGK++LL IL +L ++ G + G ++ SQ +WI
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 110
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALA 189
T++ NI+FG ++ RY + C L DI D T +GE G+ LSGGQ+ R++LA
Sbjct: 111 GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170
Query: 190 RALYSNSF 197
RA+Y ++
Sbjct: 171 RAVYKDAD 178
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 108 bits (271), Expect = 8e-29
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC----------- 118
AL +IN P GK V + G GSGKS + I G + +G
Sbjct: 30 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89
Query: 119 --AYVSQEAWITNDTLRHNILFGEPFEP--QRYYKTLYNCALNTDIHILPGGDQTEIGER 174
A VSQ + NDT+ +NI + E ++ + I+ + G T IGE
Sbjct: 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN 149
Query: 175 GINLSGGQKQRVALARALYSNS 196
G+ LSGGQ+QR+A+ARAL +S
Sbjct: 150 GVLLSGGQRQRIAIARALLRDS 171
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 106 bits (267), Expect = 2e-28
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC------- 118
+ L DI+F A ++ G G GKS + + + TAG+++ +G
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 119 ------AYVSQEAWITNDTLRHNILFGEP--FEPQRYYKTLYNCALNTDIHILPGGDQTE 170
+VSQ++ I T+R N+ +G + + ++ L + + +P TE
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE 132
Query: 171 IGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQS 216
+GERG+ +SGGQ+QR+A+ARA N L+L SL S
Sbjct: 133 VGERGVKISGGQRQRLAIARAFLRNP------KILMLDEATASLDS 172
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 102 bits (256), Expect = 8e-27
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
L + F G++ + G GSGKS + + + + T G+L +G
Sbjct: 29 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88
Query: 118 -CAYVSQEAWITNDTLRHNILFGEPFEP--QRYYKTLYNCALNTDIHILPGGDQTEIGER 174
A V QE + +L+ NI +G +P + ++ I LP G TE+ E
Sbjct: 89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEA 148
Query: 175 GINLSGGQKQRVALARALYSNS 196
G LSGGQ+Q VALARAL
Sbjct: 149 GSQLSGGQRQAVALARALIRKP 170
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 92.7 bits (230), Expect = 4e-23
Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 20/163 (12%)
Query: 66 ERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------- 117
+ + L +IN +G+++GI G GSGKS L I G++ +G
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73
Query: 118 -----CAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCA-LNTDIHILPGGDQTEI 171
V Q+ + N ++ NI P A + I L G T +
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIV 133
Query: 172 GERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSL 214
GE+G LSGGQ+QR+A+ARAL +N L+ +L
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNN------PKILIFDEATSAL 170
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 72.7 bits (178), Expect = 9e-16
Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 18/154 (11%)
Query: 60 LKAEDVER----NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
++ DV + A+ +++ G+ + + G G GK+ L I + G++
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 116 GTCAYVSQEAWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER- 174
++ R + + + + N A + +P + +
Sbjct: 64 DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123
Query: 175 ----GI---------NLSGGQKQRVALARALYSN 195
G+ LSGGQ+QRVAL RA+
Sbjct: 124 AELLGLTELLNRKPRELSGGQRQRVALGRAIVRK 157
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 71.9 bits (176), Expect = 1e-15
Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 24/178 (13%)
Query: 60 LKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-- 117
++ +DV + L ++ G+++ + G G+GKS LL + + S G + G
Sbjct: 4 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPL 62
Query: 118 -----------CAYVSQEAWIT-NDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPG 165
AY+SQ+ + H + + + + AL D
Sbjct: 63 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD------ 116
Query: 166 GDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEEV 223
++G LSGG+ QRV LA + + + L+LL ++ + +
Sbjct: 117 ---DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 171
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 69.2 bits (169), Expect = 2e-14
Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 17/166 (10%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
A+ I+ P+G++V + GA G+GK+ L AI +R+ GK+ G I
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNT-----------DIHILPGGDQTEIGERGINL 178
+ F Y+ L A N I L + + + G L
Sbjct: 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTL 140
Query: 179 SGGQKQRVALARALYSNSFEQQTFHFLVLLCPCVSLQSILLMEEVN 224
SGG++Q +A+ RAL S L++ P + L IL+ E
Sbjct: 141 SGGEQQMLAIGRALMSRP------KLLMMDEPSLGLAPILVSEVFE 180
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 67.7 bits (165), Expect = 5e-14
Identities = 40/183 (21%), Positives = 67/183 (36%), Gaps = 34/183 (18%)
Query: 60 LKAEDVER----NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L+ E++ + AL ++ KG + I G GSGKS L+ I L++ G++ E
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
Query: 116 GT--------------CAYVSQEA-WITNDTLRHNILFGEPFEPQRYYKTLYNCALNTD- 159
Q + T+ N+L GE + +L+
Sbjct: 65 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 124
Query: 160 -------IHILPGGDQTEIGERGI-NLSGGQKQRVALARALYSNSFEQQTFHFLVLLCPC 211
IL + + +R LSGGQ + V + RAL +N +V+ P
Sbjct: 125 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNP------KMIVMDEPI 178
Query: 212 VSL 214
+
Sbjct: 179 AGV 181
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 67.1 bits (164), Expect = 9e-14
Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 24/139 (17%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-----------C 118
A+ +N G+ + + G G GK+ L I T G++
Sbjct: 21 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 80
Query: 119 AYVSQEAWITND-TLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERG-- 175
+ V Q + T+ NI F P + K + + +I E
Sbjct: 81 SMVFQSYAVWPHMTVYENIAF-----PLKIKKFPKDEIDKRVRWAA---ELLQIEELLNR 132
Query: 176 --INLSGGQKQRVALARAL 192
LSGGQ+QRVA+ARA+
Sbjct: 133 YPAQLSGGQRQRVAVARAI 151
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 66.8 bits (163), Expect = 1e-13
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 18/144 (12%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT------------ 117
AL ++N +G+ V I G GSGKS +L I + T G++ +
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 118 -----CAYVSQEAW-ITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEI 171
+V Q+ I T N+ F+ + + + ++
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA 139
Query: 172 GERGINLSGGQKQRVALARALYSN 195
+ LSGGQ+QRVA+ARAL +N
Sbjct: 140 NHKPNQLSGGQQQRVAIARALANN 163
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 66.4 bits (162), Expect = 1e-13
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL +++ P G++ G+ GA G+GKS L+ + R T G + +G ++ +
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE--LTTLSESEL 77
Query: 130 DTLRHNI-LFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGER-----GI------- 176
R I + + F N AL ++ P + G+
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 137
Query: 177 --NLSGGQKQRVALARAL 192
NLSGGQKQRVA+ARAL
Sbjct: 138 PSNLSGGQKQRVAIARAL 155
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 64.2 bits (156), Expect = 7e-13
Identities = 38/143 (26%), Positives = 48/143 (33%), Gaps = 26/143 (18%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
DIN +G+ V G G GKS LL I T+G L N
Sbjct: 15 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE---------KRMN 65
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI------------- 176
DT G F+ Y L + L G + I +R
Sbjct: 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD 125
Query: 177 ----NLSGGQKQRVALARALYSN 195
LSGGQ+QRVA+ R L +
Sbjct: 126 RKPKALSGGQRQRVAIGRTLVAE 148
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 61.5 bits (149), Expect = 6e-12
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 19/140 (13%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
L I+F +G++ G+ G G+GK+ L I + ++ ++G ++ G +
Sbjct: 17 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV-----EEPH 71
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN------------ 177
+ + E R + + + + E+ ER
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV 131
Query: 178 --LSGGQKQRVALARALYSN 195
S G +++ +ARAL N
Sbjct: 132 STYSKGMVRKLLIARALMVN 151
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 60.5 bits (146), Expect = 1e-11
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 30/151 (19%)
Query: 60 LKAEDVER---NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116
++ E + R N +L +++ G+ I G G+GK+ L I +G++ +G
Sbjct: 2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG 61
Query: 117 T-----------CAYVSQEA-----WITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDI 160
A+V Q L + + +P+R T + + +
Sbjct: 62 KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL 121
Query: 161 HILPGGDQTEIGERGINLSGGQKQRVALARA 191
P + LSGG++QRVALARA
Sbjct: 122 DRNP-----------LTLSGGEQQRVALARA 141
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 59.6 bits (144), Expect = 2e-11
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 16/135 (11%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT--------CAYV 121
L I KG +V G G GK+ LL I + L+ G++ G ++
Sbjct: 16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFL 75
Query: 122 SQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSG 180
+E ++ + + K AL + + ++ ++ LS
Sbjct: 76 PEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES-------VEVLDLKKKLGELSQ 128
Query: 181 GQKQRVALARALYSN 195
G +RV LA L N
Sbjct: 129 GTIRRVQLASTLLVN 143
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 58.2 bits (140), Expect = 1e-10
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 15/135 (11%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN 129
AL ++N G+ GI G G+GK+ + I + G+L + + + +
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 130 DTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN------------ 177
+ R + + + N A + + + E
Sbjct: 80 ED-RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 178 --LSGGQKQRVALAR 190
LSG Q+QRVALAR
Sbjct: 139 RELSGAQQQRVALAR 153
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 55.4 bits (133), Expect = 1e-09
Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 19/145 (13%)
Query: 64 DVERNIALVDINF-FAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT----- 117
E+ + +N F + G G+GKS L I ++ G++ G
Sbjct: 6 RAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL 65
Query: 118 ------CAYVSQE-AWITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTE 170
+V Q+ A + ++ NI +G + G
Sbjct: 66 PPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL------GIAHL 119
Query: 171 IGERGINLSGGQKQRVALARALYSN 195
+ + LSGG++QRVALARAL
Sbjct: 120 LDRKPARLSGGERQRVALARALVIQ 144
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 54.1 bits (130), Expect = 3e-09
Identities = 38/172 (22%), Positives = 61/172 (35%), Gaps = 43/172 (25%)
Query: 60 LKAEDVER----NIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
L D+ + + L ++ A G ++ I G+ GSGKS L I + + G +
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 62
Query: 116 GT--------------------------CAYVSQE-AWITNDTLRHNILFGEPFEPQRYY 148
G V Q ++ T+ N++ P +
Sbjct: 63 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA----PIQVL 118
Query: 149 KTLYNCALNTDIHILPGGDQTEIGERGIN-----LSGGQKQRVALARALYSN 195
+ A + L + I ER LSGGQ+QRV++ARAL
Sbjct: 119 GLSKHDARERALKYL---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 167
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 43.8 bits (102), Expect = 4e-06
Identities = 12/112 (10%), Positives = 24/112 (21%), Gaps = 15/112 (13%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFE 143
+ I G G GK+ L+ I+ +L A E +++
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFR-------------- 48
Query: 144 PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSN 195
+ + + + A A
Sbjct: 49 -IITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDR 99
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 39.1 bits (90), Expect = 3e-04
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 56 ESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSRE 115
ES R++ + + + VGI G G GKS + A+ S L + K+
Sbjct: 27 ESRRADHRAAVRDL-IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV--- 82
Query: 116 GTCAYVSQEAWITNDTLRHNILFGE 140
V + T ++ +
Sbjct: 83 -AVLAVDPSSTRTGGSILGDKTRMA 106
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 37.7 bits (86), Expect = 7e-04
Identities = 18/128 (14%), Positives = 34/128 (26%), Gaps = 1/128 (0%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFE 143
+G+ G V GK+ L A+ T + R G + P
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 67
Query: 144 PQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQTFH 203
P ++T + ++ I G +L G +A +
Sbjct: 68 PYCGHETEFVRRVSF-IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 126
Query: 204 FLVLLCPC 211
++
Sbjct: 127 LQIIGQKN 134
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 37.9 bits (87), Expect = 8e-04
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 56 ESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114
ES H + + + + L I + +G+ G G+GKS L A L K++
Sbjct: 30 ESRHPRHQALSTQL-LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 87
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 36.4 bits (83), Expect = 0.001
Identities = 8/83 (9%), Positives = 22/83 (26%), Gaps = 3/83 (3%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEP 141
+ + G SGK+ L+ ++ ++ GT + ++
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRV---GTVKHHGHGGEPARPEGVDSVRHERA 58
Query: 142 FEPQRYYKTLYNCALNTDIHILP 164
+ L+ +
Sbjct: 59 GAVATAVEGDGLLQLHLRRPLWR 81
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 35.3 bits (80), Expect = 0.005
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPF 142
L+G+ G SGKS++ I+ L ++ +SQ+++ T +
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQK-QVVILSQDSFYRVLTSEQKAKALKGQ 62
Query: 143 EPQRYYKTLYNCALNTDIHILPGGDQTEI 171
+ N + + + G +I
Sbjct: 63 FNFDHPDAFDNELILKTLKEITEGKTVQI 91
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 34.9 bits (79), Expect = 0.005
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 84 VGICGAVGSGKSALLYAILSQLRS-TAGKLSREGTC--AYVSQEAWITNDTLRHNILFGE 140
+G+ G V GK+ L+ AI S + +L R T Y + + E
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
Query: 141 P 141
P
Sbjct: 71 P 71
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 34.7 bits (78), Expect = 0.008
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124
G + + G +GKS L + + + EG C Y+ E
Sbjct: 32 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 77
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 34.3 bits (77), Expect = 0.011
Identities = 9/56 (16%), Positives = 22/56 (39%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRH 134
+ + G GSGK+ L + + ++ + G+ ++ E + +R
Sbjct: 34 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIRE 89
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 34.4 bits (77), Expect = 0.011
Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 12/121 (9%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAW 126
R+ + + F +G + I G GSGKS+LL AIL L L + +
Sbjct: 12 RSHSDTVVEF--KEG-INLIIGQNGSGKSSLLDAILVGL---YWPLRIKDI--KKDEFTK 63
Query: 127 ITNDTLRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRV 186
+ +++F + R + + +IH + + +G +++ + +
Sbjct: 64 VGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAM----KRLVGNEWKHVTEPSSKAI 119
Query: 187 A 187
+
Sbjct: 120 S 120
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 33.7 bits (75), Expect = 0.019
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAI 101
R+ + + F K + I G GSGKS+LL AI
Sbjct: 12 RSHSDTVVEF---KEGINLIIGQNGSGKSSLLDAI 43
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 33.2 bits (75), Expect = 0.023
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLSR 114
+ G GSGKS I + L G
Sbjct: 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKS 60
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 33.2 bits (74), Expect = 0.029
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 72 VDINFFAPKGKLVGICGAVGSGKSALLYAI 101
+ F I G GSGKS ++ AI
Sbjct: 18 TKVGFGESN--FTSIIGPNGSGKSNMMDAI 45
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 32.4 bits (72), Expect = 0.035
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 83 LVGICGAVGSGKSALLYAILSQLR 106
++GI G SGK+ L + LR
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLR 47
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 32.3 bits (72), Expect = 0.037
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWI 127
+ V + G G GK+ L++ L+S+ + T I
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRI 47
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 32.3 bits (72), Expect = 0.039
Identities = 11/97 (11%), Positives = 23/97 (23%), Gaps = 2/97 (2%)
Query: 81 GKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGE 140
G++V + G GKS ++ + ++ + S T D + +
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL--HFSVSATTRAPRPGEVDGVDYHFIDPTRFQ 59
Query: 141 PFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGIN 177
Q G+
Sbjct: 60 QLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVP 96
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.9 bits (71), Expect = 0.057
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 84 VGICGAVGSGKSALLYAILSQLRS 107
V G GSGK+ L L
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLED 26
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 31.8 bits (72), Expect = 0.068
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRS 107
++ + G+ G+G S + + R
Sbjct: 6 IISVTGSSGAGTSTVKHTFDQIFRR 30
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 31.6 bits (70), Expect = 0.082
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 1/85 (1%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILF 138
+ G +GK+ L + + + G ++ E D LR +I
Sbjct: 35 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIAD 93
Query: 139 GEPFEPQRYYKTLYNCALNTDIHIL 163
+ + T H +
Sbjct: 94 RFNVDHDAVLDNVLYARAYTSEHQM 118
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 31.1 bits (69), Expect = 0.084
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
+++ + G +GKS ++ + S L L+ + + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLP--EPWLAFGVDSLIEAMPLKMQSAEGGIEFDAD 59
Query: 140 EPFEPQRYYKTLY 152
++ L
Sbjct: 60 GGVSIGPEFRALE 72
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 31.2 bits (69), Expect = 0.13
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 4/59 (6%)
Query: 79 PKGKLVGICGAVGSGKSALL----YAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLR 133
G + + G+GKS L I G Y+ E T R
Sbjct: 27 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHR 85
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 30.8 bits (69), Expect = 0.13
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE 124
VG G V GK+ L AI L G ++ + E
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPE 46
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 30.8 bits (68), Expect = 0.15
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEA 125
I F ++ I G GSGKS ++ AI + K R +
Sbjct: 18 SLIGFSD---RVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAG 68
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 30.6 bits (68), Expect = 0.15
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 81 GKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGT-------CAYVSQEAWITNDTLR 133
G L + G+GKS+L+ A+L ++S T + ++ +D +
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK 61
Query: 134 HNILFGEPFEPQRYYKTLYNCALNTDIHILPGG 166
I E + Y + +L G
Sbjct: 62 EMISRDAFLEHAEVFGNYYGTSREAIEQVLATG 94
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 30.4 bits (67), Expect = 0.17
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAG-KLSREGTCAYVSQEAWITNDTLRHNILFGEPF 142
+GI G + GK+ L + ++A KL + + I +
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAP 67
Query: 143 EPQRYYKTLYNCALNTDIH 161
+ + + A D+
Sbjct: 68 GHADLIRAVVSAADIIDLA 86
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 30.3 bits (67), Expect = 0.17
Identities = 8/61 (13%), Positives = 17/61 (27%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEP 141
L+ G+GK+ LL ++ L + + + D+
Sbjct: 3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQ 62
Query: 142 F 142
Sbjct: 63 T 63
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.5 bits (67), Expect = 0.18
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 81 GKLVGICGAVGSGKSALLYAILSQLR 106
+ + G +GKS+++ +++L
Sbjct: 29 APITLVLGLRRTGKSSIIKIGINELN 54
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 30.1 bits (66), Expect = 0.18
Identities = 20/130 (15%), Positives = 31/130 (23%), Gaps = 16/130 (12%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEP 141
K++ G GSGKS A + + Y I D R +I+ E
Sbjct: 3 KIILTIGCPGSGKSTW-----------AREFIAKNPGFYN-----INRDDYRQSIMAHEE 46
Query: 142 FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQT 201
+ +Y K +G+ +S
Sbjct: 47 RDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWK 106
Query: 202 FHFLVLLCPC 211
V P
Sbjct: 107 VEHKVFDVPW 116
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 30.4 bits (68), Expect = 0.19
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 11/99 (11%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFE 143
+GI + +GK+ IL G++ + G E T D + G
Sbjct: 9 IGIAAHIDAGKTTTTERILYY----TGRIHKIGE----VHEGAATMDFMEQERERGITIT 60
Query: 144 PQRYYKTLYNCALNTDIHILPGG-DQTEIGERGINLSGG 181
+ +N I PG D T ER + + G
Sbjct: 61 AAVTTCFWKDHRIN--IIDAPGHVDFTIEVERSMRVLDG 97
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 30.7 bits (68), Expect = 0.20
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
Query: 72 VDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDT 131
V I F I GA GSGKS + AIL L + K R + +
Sbjct: 20 VVIPF---SKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPP 76
Query: 132 LRHNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQ 168
++ + R + + + G
Sbjct: 77 AKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSS 113
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 29.9 bits (66), Expect = 0.27
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTC 118
+GKL+ I G +GK+ + +L+ L
Sbjct: 2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERS 40
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 30.0 bits (67), Expect = 0.28
Identities = 15/124 (12%), Positives = 27/124 (21%), Gaps = 5/124 (4%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQE-----AWITNDTLR 133
P V I G G GK+ +++ E + A I R
Sbjct: 2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHR 61
Query: 134 HNILFGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALY 193
+ + + GE G + + + R
Sbjct: 62 LDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPI 121
Query: 194 SNSF 197
+
Sbjct: 122 AALL 125
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 29.4 bits (65), Expect = 0.34
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCA 119
+ + G V GKS L+ +L K +E A
Sbjct: 6 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEA 41
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 29.6 bits (65), Expect = 0.37
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 67 RNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEA 125
+ + + G G+GKS + A ++ L L T +
Sbjct: 13 NGFFARTFDL---DELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSG 68
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.9 bits (63), Expect = 0.40
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 81 GKLVGICGAVGSGKSALLYAILSQLRSTAG 110
GKL+ G +GK+ LL+ + + +T
Sbjct: 1 GKLL-FLGLDNAGKTTLLHMLKNDRLATLQ 29
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 29.1 bits (64), Expect = 0.42
Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 81 GKLVGICGAVGSGKSALLYAILSQL-------RSTAGKLSREGTCAYVSQEAWITNDTLR 133
K + + GA G G+ + ++++ + ++ + ++++D +
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYY-FVSHDQMM 61
Query: 134 HNILFGEPFEPQRYYKTLY 152
+I E E + +Y
Sbjct: 62 QDISNNEYLEYGSHEDAMY 80
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 29.1 bits (64), Expect = 0.44
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLR----STAGKLSRE 115
KL+ + G SGK I+S AG +
Sbjct: 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA 39
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.4 bits (64), Expect = 0.47
Identities = 14/82 (17%), Positives = 25/82 (30%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILF 138
G + + G +GK+ + + + + + EG Y+ E + L
Sbjct: 21 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER 80
Query: 139 GEPFEPQRYYKTLYNCALNTDI 160
Y A NTD
Sbjct: 81 YGLSGSDVLDNVAYARAFNTDH 102
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 28.8 bits (63), Expect = 0.48
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQL 105
G ++ + G GSGKS + A+ +
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLP 28
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 28.9 bits (63), Expect = 0.54
Identities = 12/71 (16%), Positives = 22/71 (30%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFE 143
+ I G GKS LL +L Q S + ++ V + + E
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 144 PQRYYKTLYNC 154
+ + +
Sbjct: 68 KRAINRLMNKA 78
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 28.7 bits (63), Expect = 0.56
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 76 FFAPKGKLVGICGAVGSGKSALLYAILSQL 105
+P ++V G G+GKS + L
Sbjct: 9 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 38
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.7 bits (63), Expect = 0.58
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQL 105
K ++ GA G+GK+ L+ +
Sbjct: 24 FKDSIILATGATGTGKTLLVSRFVENA 50
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 28.6 bits (62), Expect = 0.59
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 4/83 (4%)
Query: 84 VGICGAVGSGKSALLYAILSQLRS----TAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
V I G GKS L ++ + ++ G
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62
Query: 140 EPFEPQRYYKTLYNCALNTDIHI 162
+ Q+ + N D+ +
Sbjct: 63 QDIISQKMKEVTLNMIREADLVL 85
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.9 bits (63), Expect = 0.60
Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 10/67 (14%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQL----------RSTAGKLSREGTCAYVSQEAWIT 128
+ G GSGK+ +++ L + + + Y+ E
Sbjct: 32 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR 91
Query: 129 NDTLRHN 135
+ +
Sbjct: 92 PERIMQM 98
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.8 bits (63), Expect = 0.63
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQ 104
P G+ + G G+GK+ L
Sbjct: 24 PIGRSTLVSGTSGTGKTLFSIQFLYN 49
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.1 bits (64), Expect = 0.65
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 86 ICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFEPQ 145
+ GA G+GKS LL + L R V + + R + P++ +
Sbjct: 55 VNGATGTGKSVLLRELAYTG------LLRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQR 108
Query: 146 R-YYKTLYNCALNTDIHIL 163
+ + D
Sbjct: 109 TKGWSFFNEIRNDYDWQRY 127
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 28.4 bits (63), Expect = 0.69
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYV----SQEAWITNDT 131
VG G V GK+ L A+ + + + + IT +T
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT 57
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 28.7 bits (63), Expect = 0.71
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 2/93 (2%)
Query: 84 VGICGAVGSGKSALLYAIL--SQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEP 141
+ G V +GKS L IL + + E +E+W + L E
Sbjct: 27 IVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREK 86
Query: 142 FEPQRYYKTLYNCALNTDIHILPGGDQTEIGER 174
+ + + + G + +
Sbjct: 87 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNM 119
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.6 bits (62), Expect = 0.71
Identities = 9/71 (12%), Positives = 14/71 (19%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPFE 143
V I G GKS LL +L + + + +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67
Query: 144 PQRYYKTLYNC 154
Sbjct: 68 DALGEFMDQEV 78
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.4 bits (62), Expect = 0.74
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 82 KLVGICGAVGSGKSALLYAILSQL-------RSTAGKLSREGTCAYVSQEAWITNDTLRH 134
+ + I G G+GKS LL + ++ S+ + R G ++
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEF--K 59
Query: 135 NILFGEPFEPQRYYKTLYNCALNTDIH 161
+++ F + Y + +
Sbjct: 60 SMIKNNEFIEWAQFSGNYYGSTVASVK 86
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 28.4 bits (62), Expect = 0.74
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 80 KGKLVGICGAVGSGKS---ALLYAILSQLRSTAGKLSRE 115
+ K + I G G+GK+ ++ L QL +RE
Sbjct: 1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE 39
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 28.3 bits (62), Expect = 0.82
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREG 116
V + G GSGK+ L A+L + G R G
Sbjct: 5 VALVGHAGSGKTTLTEALLYK----TGAKERRG 33
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.1 bits (61), Expect = 0.86
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVS-------QEAWITNDTLRHNI 136
V I G GKS L AIL++ R+ + + ++ LR
Sbjct: 11 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 70
Query: 137 LFGEPFEPQRYYKTLYNCALNTDIHILP 164
+ + + D+ ++
Sbjct: 71 RVEPRTVEKYSNYRVVDSIEKADVVVIV 98
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 28.1 bits (61), Expect = 0.87
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLS-----REGTCAYVSQEAWITNDT 131
VG+ G +GKS+LL A+ A G +E + D
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADI 56
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.7 bits (60), Expect = 1.0
Identities = 7/82 (8%), Positives = 19/82 (23%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
KG + G+GK+ + + + V
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHT 65
Query: 140 EPFEPQRYYKTLYNCALNTDIH 161
+ F + + + + +
Sbjct: 66 QAFSAHGSGREVIDAMCHATLT 87
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 28.2 bits (62), Expect = 1.0
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGT 117
+ + V GKS L +++ + + + E
Sbjct: 20 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEAR 53
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.1 bits (61), Expect = 1.1
Identities = 11/67 (16%), Positives = 22/67 (32%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFG 139
G+++ + G GKS + Q + GK +E L + +
Sbjct: 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLR 93
Query: 140 EPFEPQR 146
+ +R
Sbjct: 94 QSDSLKR 100
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 27.7 bits (60), Expect = 1.1
Identities = 12/107 (11%), Positives = 27/107 (25%), Gaps = 5/107 (4%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDT-----LRHNILF 138
+ G GKS L+Y + + + + + D +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 139 GEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQR 185
+ + + A N D+ +L + G+
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPI 109
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.0 bits (61), Expect = 1.2
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 80 KGKLVGICGAVGSGKS-ALLYAILSQLRSTAGK 111
K +L + G+GK+ L AI+ + +
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLR 40
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.6 bits (61), Expect = 1.3
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ 104
L+++ G V + G G GKS ++++
Sbjct: 9 VLLEVF-----GVGVLLTGRSGIGKSECALDLINK 38
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 27.6 bits (60), Expect = 1.3
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITND 130
+G L+ + G +GKS +Q R L G A + + + +
Sbjct: 2 RGALIVLEGVDRAGKS-------TQSRKLVEALCAAGHRAELLRFPERSTE 45
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 27.7 bits (61), Expect = 1.5
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 84 VGICGAVGSGKSALLYAILSQLRS 107
V + G V SGKS ++ +
Sbjct: 9 VVVIGHVDSGKSTTTGHLIYKCGG 32
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 27.3 bits (59), Expect = 1.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 84 VGICGAVGSGKSALLYAILSQ 104
+ I G SGK++LL + +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTD 26
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 27.3 bits (59), Expect = 1.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 76 FFAPKGKLVGICGAVGSGKSALLYAILSQLRST 108
FFA K V I G SGKS L+ + + +T
Sbjct: 5 FFA---KTVAILGGESSGKSVLVNKLAAVFNTT 34
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 27.2 bits (59), Expect = 1.7
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 83 LVGICGAVGSGKSALLYAILSQL 105
++GI G +GSGKS + A+L
Sbjct: 5 IIGITGNIGSGKSTVA-ALLRSW 26
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 27.3 bits (59), Expect = 1.7
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 84 VGICGAVGSGKSALLYAILSQ 104
V + G V GK+ LL I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGS 28
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 27.3 bits (59), Expect = 1.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 79 PKGKLVGICGAVGSGKSAL 97
PKG + I G G+GK+++
Sbjct: 3 PKGINILITGTPGTGKTSM 21
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 27.3 bits (59), Expect = 1.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 82 KLVGICGAVGSGKSALLYAILSQ 104
+ V G SGK+ L +L+
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTG 23
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 27.1 bits (59), Expect = 2.2
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 55 EESTHLKAEDVERNIALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQLRSTAGK 111
+ + +++ V+R I +D + + G GSGKS + LS+ G
Sbjct: 19 QMTCYIREYHVDRVIKKLD-EMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI 74
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 26.9 bits (58), Expect = 2.3
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRS 107
+ K + I G + +GKS + +
Sbjct: 1 RIKKISIEGNIAAGKSTFVNILKQLCED 28
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.9 bits (58), Expect = 2.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 82 KLVGICGAVGSGKSALLYAILSQL 105
KL I G G GKS + +QL
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQL 26
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 26.8 bits (59), Expect = 2.6
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ 104
LVDI G V I G G GKS ++ +
Sbjct: 8 VLVDIY-----GLGVLITGDSGVGKSETALELVQR 37
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
influenzae [TaxId: 727]}
Length = 205
Score = 26.8 bits (58), Expect = 2.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 82 KLVGICGAVGSGKSA 96
+VG+ G +GSGK+
Sbjct: 3 YIVGLTGGIGSGKTT 17
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 26.8 bits (58), Expect = 2.7
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 82 KLVGICGAVGSGKSALLYAIL-----SQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNI 136
KL+ G G GK+ LY + +T G RE Y +Q ++
Sbjct: 7 KLL-ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 137 LFGEPFEPQRYYKTL 151
L Q +++L
Sbjct: 66 LQLWDTAGQERFRSL 80
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.4 bits (58), Expect = 2.7
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 70 ALVDINFFAPKGKLVGICGAVGSGKSALLYAILSQ 104
LVD+ G V I G G GKS ++ +
Sbjct: 9 VLVDVY-----GVGVLITGDSGIGKSETALELIKR 38
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 27.0 bits (59), Expect = 2.7
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRSTAGKLS 113
++ I G+V GKS + + L
Sbjct: 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRR 112
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 26.5 bits (57), Expect = 2.9
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLR 106
+ V I G +GSGK+ L
Sbjct: 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 26.6 bits (57), Expect = 3.0
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 2/83 (2%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILF 138
+ G G VG GK+ L + ++ A K A+ + L
Sbjct: 44 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLT--VKQAYVNAFNAPNLYTILSLI 101
Query: 139 GEPFEPQRYYKTLYNCALNTDIH 161
+ + +
Sbjct: 102 VRQTGYPIQVRGAPALDILKALV 124
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 26.2 bits (56), Expect = 3.0
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGK 111
V I G +GKS+LL A+ + +
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVTD 31
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 26.6 bits (57), Expect = 3.2
Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 78 APKGKL--VGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHN 135
P+G L + + G GKS+ + +++++ T +
Sbjct: 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVP 77
Query: 136 ILFGEPFEPQRYY 148
Sbjct: 78 GYGFAKVSKSERE 90
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 26.4 bits (57), Expect = 3.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTA 109
VG+ G GKS LL + S A
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIA 29
>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1
{Escherichia coli O157:H7 [TaxId: 83334]}
Length = 186
Score = 26.5 bits (58), Expect = 3.2
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRSTAGKL 112
+VG+ GA G+ L L ++ + L
Sbjct: 4 IVGMTGATGAPLGVALLQALREMPNVETHL 33
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase
(PPC decarboxylase, halotolerance protein Hal3a) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 26.1 bits (57), Expect = 3.3
Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 13/135 (9%)
Query: 83 LVGICGAVGSGKSALLYAILSQLRSTAGK-LSREGTCAYVSQEAWITNDTLRHNILFGEP 141
LVG+ G+V + K LL + L + ++ E + S +
Sbjct: 8 LVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIPVTLYSDA------- 60
Query: 142 FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINLSGGQKQRVALARALYSNSFEQQT 201
++ + +HI + ++ + K + L +
Sbjct: 61 -----DEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWD 115
Query: 202 FHFLVLLCPCVSLQS 216
+L CP ++
Sbjct: 116 RSKPLLFCPAMNTAM 130
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 26.2 bits (56), Expect = 4.0
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRST 108
+++ I G G+GK+ +LY + T
Sbjct: 7 RIL-ILGLDGAGKTTILYRLQVGEVVT 32
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 25.8 bits (55), Expect = 4.2
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 7/73 (9%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEP 141
+L + G SGK+ + I S G+ + + IT + +
Sbjct: 4 ELT-LVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGG 56
Query: 142 FEPQRYYKTLYNC 154
R Y
Sbjct: 57 QPRFRSMWERYCR 69
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 25.8 bits (56), Expect = 4.3
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQLRSTAGK---LSREGTCAYVSQEAWITNDTLRHNI 136
G + I G + SGKS L + + + K E Y ++ +
Sbjct: 6 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAV 65
Query: 137 LFGEPFEPQRYYKTLYNCALNTDIHILPG 165
E +Y++ ++
Sbjct: 66 AIKNSREILKYFEEDTEVIAIDEVQFFDD 94
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.1 bits (56), Expect = 4.5
Identities = 10/99 (10%), Positives = 25/99 (25%), Gaps = 4/99 (4%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGK--LSREGT--CAYVSQEAWITNDTLRHNIL 137
K+V + G G G + + LR + G+ +E +++ +
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMD 61
Query: 138 FGEPFEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGI 176
Q+ + + +
Sbjct: 62 PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYL 100
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.1 bits (56), Expect = 4.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 82 KLVGICGAVGSGKSALLYAILSQL 105
+ V + G G+GKS LL + +
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEH 24
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 26.2 bits (57), Expect = 4.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 79 PKGKLVGICGAVGSGKSALLYAILSQL 105
PK + G + SGK+ L A+L
Sbjct: 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 26.0 bits (56), Expect = 5.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 83 LVGICGAVGSGKSA 96
+V + G +GSGKS
Sbjct: 5 IVALTGGIGSGKST 18
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 26.3 bits (57), Expect = 5.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 84 VGICGAVGSGKSALLYAIL 102
V + G GSGKS+ + +
Sbjct: 59 VAVTGETGSGKSSFINTLR 77
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 25.7 bits (55), Expect = 5.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 84 VGICGAVGSGKSALLYAILSQLRSTAGKL 112
+ I G GKS LL +L++ R+ +
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDI 31
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 26.1 bits (57), Expect = 5.3
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 74 INFFAP--KGKLVGICGAVGSGKSALLYAI 101
++ +P +G+ I +GK+ LL I
Sbjct: 34 LDLASPIGRGQRGLIVAPPKAGKTMLLQNI 63
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 25.4 bits (55), Expect = 5.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 80 KGKLVGICGAVGSGKSALL 98
+G++ I G + SGKS L
Sbjct: 1 RGQIQVILGPMFSGKSTEL 19
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 25.7 bits (55), Expect = 5.8
Identities = 9/97 (9%), Positives = 21/97 (21%), Gaps = 19/97 (19%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEP 141
K+ + G G GKS + K+ ++ + D +
Sbjct: 2 KIGIVTGIPGVGKS-----------TVLAKVKEILDNQGINNKIINYGDFMLA------- 43
Query: 142 FEPQRYYKTLYNCALNTDIHILPGGDQTEIGERGINL 178
+ + Q + +
Sbjct: 44 -TALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEE 79
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 25.8 bits (55), Expect = 6.2
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITN--DTLRHNILFG 139
+ + I G + GKS + + T + N+L
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDM 62
Query: 140 EPFEPQRYYKTLYNCALNT 158
EP R+ T + +
Sbjct: 63 MYREPARWSYTFQTFSFLS 81
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 25.4 bits (54), Expect = 6.3
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAG 110
+L+ + G +GK+ +L + T
Sbjct: 4 RLL-MLGLDNAGKTTILKKFNGEDVDTIS 31
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 25.6 bits (55), Expect = 6.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 80 KGKLVGICGAVGSGKSALLYAILSQL 105
+G + + G SGKS L + QL
Sbjct: 23 RGLTIWLTGLSASGKSTLAVELEHQL 48
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 25.8 bits (56), Expect = 6.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 82 KLVGICGAVGSGKSALLYAILSQ 104
+V I G +GKS L+ + +
Sbjct: 33 VVVAIVGLYRTGKSYLMNKLAGK 55
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 25.4 bits (54), Expect = 6.5
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 82 KLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYVSQEAWITNDTLRHNILFGEP 141
+++ + G +GK+ +LY + T T + + N + + G+
Sbjct: 2 RIL-MVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEYKNISFTVWDVGGQD 55
Query: 142 FE---PQRYYKTLYNCALNTDIH 161
+ Y++ D +
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSN 78
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 25.5 bits (55), Expect = 6.6
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 84 VGICGAVGSGKSALLYAILSQLRS-TAGKLSREGTCAYVSQEAWITNDTLRHNILFGEPF 142
+ + G G GKS+ + +I+ + + S VS+ + E
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 94
Query: 143 EPQRYYKTLYNCALN 157
+ L
Sbjct: 95 YINDMALNIIKSFLL 109
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 25.6 bits (55), Expect = 7.0
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 84 VGICGAVGSGKSALLYAILSQ 104
CG V GKS L+ +L
Sbjct: 12 FLTCGNVDDGKSTLIGRLLHD 32
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 25.5 bits (56), Expect = 7.9
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 74 INFFAP--KGKLVGICGAVGSGKSALLYAILSQLRSTAGKLSREGTCAYV 121
++ AP KG +G+ G G GK+ L+ +++ + + G +
Sbjct: 59 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV-----AKAHGGYSVFA 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 947,200
Number of extensions: 39874
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 127
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)