Query psy8501
Match_columns 195
No_of_seqs 77 out of 79
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 20:34:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07086 DUF1352: Protein of u 100.0 1.7E-80 3.6E-85 520.4 21.6 183 1-195 1-185 (186)
2 KOG4054|consensus 100.0 5.7E-74 1.2E-78 474.0 17.8 180 1-194 1-181 (183)
3 PRK04125 murein hydrolase regu 65.0 77 0.0017 26.0 13.6 83 70-178 30-115 (141)
4 PF14715 FixP_N: N-terminal do 57.7 14 0.00029 25.4 3.0 27 68-94 12-38 (51)
5 PF08196 UL2: UL2 protein; In 53.9 38 0.00082 24.0 4.7 36 20-58 23-58 (60)
6 PRK01658 holin-like protein; V 52.7 1.2E+02 0.0025 24.1 9.5 56 70-133 27-85 (122)
7 PF00510 COX3: Cytochrome c ox 51.2 43 0.00094 29.2 5.8 52 76-127 120-177 (258)
8 PRK13735 conjugal transfer mat 49.4 2.7E+02 0.0058 29.6 11.9 49 85-133 336-384 (942)
9 PRK13591 ubiA prenyltransferas 44.7 2.2E+02 0.0048 26.1 9.5 109 8-127 6-135 (307)
10 cd00386 Heme_Cu_Oxidase_III_li 41.4 1.9E+02 0.0041 23.4 8.3 33 94-126 71-103 (183)
11 PF15086 UPF0542: Uncharacteri 40.1 80 0.0017 23.5 4.8 38 156-194 19-56 (74)
12 smart00814 Alpha_TIF Alpha tra 37.9 66 0.0014 30.3 5.1 59 3-65 164-226 (356)
13 PF13903 Claudin_2: PMP-22/EMP 36.3 1.9E+02 0.0042 22.0 8.4 16 152-167 148-163 (172)
14 TIGR02897 QoxC cytochrome aa3 36.3 2.5E+02 0.0055 23.3 8.2 42 87-128 65-106 (190)
15 PF13239 2TM: 2TM domain 36.3 89 0.0019 22.5 4.6 30 164-193 49-79 (83)
16 cd02863 Ubiquinol_oxidase_III 35.7 2.5E+02 0.0055 23.2 7.9 43 87-129 63-105 (186)
17 PF11694 DUF3290: Protein of u 35.2 2E+02 0.0044 23.6 7.1 36 132-175 34-69 (149)
18 TIGR00782 ccoP cytochrome c ox 34.7 44 0.00095 29.5 3.3 35 67-101 17-51 (285)
19 PF04238 DUF420: Protein of un 34.6 2.4E+02 0.0053 22.6 8.9 37 85-121 13-49 (133)
20 PF06432 GPI2: Phosphatidylino 34.1 2.7E+02 0.0058 24.8 8.2 25 161-185 195-219 (282)
21 PF15103 G0-G1_switch_2: G0/G1 33.8 32 0.00069 27.0 2.0 39 88-128 7-45 (102)
22 PRK01821 hypothetical protein; 33.8 2.6E+02 0.0055 22.6 13.7 55 70-132 32-89 (133)
23 PHA02680 ORF090 IMV phosphoryl 33.3 1.5E+02 0.0033 22.8 5.6 65 104-177 5-69 (91)
24 PF00335 Tetraspannin: Tetrasp 31.1 16 0.00035 28.5 0.0 37 88-124 57-93 (221)
25 COG1845 CyoC Heme/copper-type 30.1 1.6E+02 0.0034 25.6 5.9 41 87-127 86-126 (209)
26 PHA03380 transactivating tegum 28.9 1.3E+02 0.0029 29.0 5.6 58 5-65 181-244 (432)
27 PF04193 PQ-loop: PQ loop repe 28.3 1.8E+02 0.0039 19.2 6.3 27 115-141 4-30 (61)
28 cd02865 Heme_Cu_Oxidase_III_2 28.2 3.2E+02 0.0068 22.4 7.2 42 87-128 62-103 (184)
29 PRK11874 petL cytochrome b6-f 28.0 1.3E+02 0.0028 18.8 3.6 28 157-184 1-28 (30)
30 KOG1558|consensus 27.9 1.2E+02 0.0026 28.0 5.1 32 121-158 65-96 (327)
31 cd02864 Heme_Cu_Oxidase_III_1 27.7 1.9E+02 0.0041 24.2 5.9 44 87-130 73-116 (202)
32 TIGR00383 corA magnesium Mg(2+ 25.8 3.7E+02 0.008 23.4 7.6 42 85-128 239-280 (318)
33 PRK13743 conjugal transfer pro 25.5 3.9E+02 0.0084 22.1 7.1 15 14-28 28-42 (141)
34 COG2456 Uncharacterized conser 25.3 2.6E+02 0.0056 22.5 5.8 55 36-96 5-63 (121)
35 MTH00052 COX3 cytochrome c oxi 24.6 2.2E+02 0.0048 25.2 6.0 53 76-128 124-182 (262)
36 PF12841 YvrJ: YvrJ protein fa 23.2 64 0.0014 20.9 1.7 12 154-165 7-18 (38)
37 PF12805 FUSC-like: FUSC-like 22.8 3.5E+02 0.0075 23.6 6.8 15 155-169 78-92 (284)
38 PF02535 Zip: ZIP Zinc transpo 22.7 4.6E+02 0.01 22.4 7.5 20 122-141 51-70 (317)
39 PF10762 DUF2583: Protein of u 22.1 40 0.00086 25.9 0.7 19 14-32 61-79 (89)
40 PRK01318 membrane protein inse 21.3 4.7E+02 0.01 25.7 8.0 25 68-95 423-447 (521)
41 COG3752 Steroid 5-alpha reduct 21.3 5.9E+02 0.013 23.3 8.0 45 10-55 92-136 (272)
42 PF10002 DUF2243: Predicted me 21.3 1.1E+02 0.0023 25.4 3.1 30 73-102 113-143 (143)
43 PRK00665 petG cytochrome b6-f 20.6 2E+02 0.0044 18.8 3.6 27 113-141 8-34 (37)
44 PF07274 DUF1440: Protein of u 20.5 1.7E+02 0.0037 23.9 4.1 17 149-165 80-96 (135)
45 CHL00008 petG cytochrome b6/f 20.5 2E+02 0.0043 18.8 3.5 26 114-141 9-34 (37)
46 PF09586 YfhO: Bacterial membr 20.3 8.6E+02 0.019 24.2 10.3 35 70-104 329-363 (843)
47 KOG3882|consensus 20.0 5.2E+02 0.011 21.5 7.4 86 39-126 13-102 (237)
No 1
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=100.00 E-value=1.7e-80 Score=520.38 Aligned_cols=183 Identities=51% Similarity=0.910 Sum_probs=174.3
Q ss_pred CCCC-CCcccCCCCCCCchhHhhhHhHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHhhhcCCCcch
Q psy8501 1 MASR-GMYVTGTDGTDFSHRQQIASHYQTSVLNKTRLKYTIFFHYLLFFVMLAKLSADILDRLDIFILEIEELLIPKPLL 79 (195)
Q Consensus 1 MaSr-G~rasGTDGSDF~hRerVas~Yq~Sa~~KsrLK~l~~~h~ll~l~~~akl~~~~l~~l~i~~~~~~~l~ip~p~~ 79 (195)
|||| ||||+|||||||+||||||+|||+||++|||||+|+++|++++++|+||+++++| +++|++++|+|++
T Consensus 1 MaSr~G~raaGTDGSDf~hRerVas~Yq~sa~~Ks~lk~l~~~h~ll~l~~~a~v~~~~L-------~~i~~~~~p~p~~ 73 (186)
T PF07086_consen 1 MASRGGPRAAGTDGSDFSHRERVASHYQMSAQLKSRLKKLILFHALLWLLMAAKVSVDIL-------LEISELQIPSPYQ 73 (186)
T ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccccCChhH
Confidence 9999 9999999999999999999999999999999999999999999999999999999 5679999999999
Q ss_pred hHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHhhcCCCCCcccchhhhhcCch-HH
Q psy8501 80 WEYIWCFSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYYFHDFWTYITLDPDEDIEDKEITMWQGYP-YA 158 (195)
Q Consensus 80 WEy~w~~Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~~~~~~~y~~~~~~~~~~~~~~~~~~G~P-~~ 158 (195)
|||+||+|++|+++|++|+||||+++|++||+|+++||++|++||+++++||++||++||+++| .+.+++.| ++
T Consensus 74 Wey~~~lS~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl~~g~~~~~~~~~~y~~~~~~~~-----~~~~~~~~~~~ 148 (186)
T PF07086_consen 74 WEYIWCLSLIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPLIYGAMYYFPEVQQYYRHGKAYR-----FIFGFSAVPMG 148 (186)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----eeeeehhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999843 33555544 58
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q psy8501 159 LLWYIFIVLALQVHTFSLYFSNNLIQCWRLRAAIKKQ 195 (195)
Q Consensus 159 ~l~Y~f~~~a~QvH~f~lyf~~kL~~aW~~~~~~~~~ 195 (195)
++||+|+++|+|||+||+||++||++||+++|++||.
T Consensus 149 ~l~Y~f~~ia~QvH~f~lYf~~kL~~aW~~~~~~kk~ 185 (186)
T PF07086_consen 149 VLWYIFIVIAVQVHGFSLYFSKKLLDAWQTRTQKKKK 185 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 8999999999999999999999999999999999984
No 2
>KOG4054|consensus
Probab=100.00 E-value=5.7e-74 Score=474.00 Aligned_cols=180 Identities=44% Similarity=0.739 Sum_probs=171.8
Q ss_pred CCCC-CCcccCCCCCCCchhHhhhHhHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHhhhcCCCcch
Q psy8501 1 MASR-GMYVTGTDGTDFSHRQQIASHYQTSVLNKTRLKYTIFFHYLLFFVMLAKLSADILDRLDIFILEIEELLIPKPLL 79 (195)
Q Consensus 1 MaSr-G~rasGTDGSDF~hRerVas~Yq~Sa~~KsrLK~l~~~h~ll~l~~~akl~~~~l~~l~i~~~~~~~l~ip~p~~ 79 (195)
|||| ||||+|||||||+||||||.|||+|+++|||||+||++|+++|++|+||+++++++.+ .++++|+|+|
T Consensus 1 MasR~gpraaGTDGsDFq~RqrVa~hYq~s~~~Ks~lK~lifvh~lI~v~mlak~~l~hl~~~-------k~d~v~~py~ 73 (183)
T KOG4054|consen 1 MASRAGPRAAGTDGSDFQHRQRVAMHYQMSVTLKSRLKKLIFVHALIWVLMLAKMSLGHLRLL-------KHDQVPMPYQ 73 (183)
T ss_pred CCCcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------hcccCCCchh
Confidence 9999 9999999999999999999999999999999999999999999999999998888664 5668999999
Q ss_pred hHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHhhcCCCCCcccchhhhhcCchHHH
Q psy8501 80 WEYIWCFSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYYFHDFWTYITLDPDEDIEDKEITMWQGYPYAL 159 (195)
Q Consensus 80 WEy~w~~Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~~~~~~~y~~~~~~~~~~~~~~~~~~G~P~~~ 159 (195)
|||+||+|++|+++|++|+||||+++|++||+++++|+|+|++||.+++||+++++.++++..+ .++.|.+||+
T Consensus 74 wey~~~~SllpslLgllsf~rnkv~~L~l~m~a~~lf~i~p~~~~~~~~f~~v~e~~t~~e~~~----s~~~~~~~p~-- 147 (183)
T KOG4054|consen 74 WEYVWALSLLPSLLGLLSFRRNKVSYLVLYMIAMGLFMIFPLVYGVGGQFCAVRELATMEERNS----STTVKLEFPG-- 147 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHccccc----cceeeecccH--
Confidence 9999999999999999999999999999999999999999999999999999999999888722 3667778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy8501 160 LWYIFIVLALQVHTFSLYFSNNLIQCWRLRAAIKK 194 (195)
Q Consensus 160 l~Y~f~~~a~QvH~f~lyf~~kL~~aW~~~~~~~~ 194 (195)
||+|+++|+|||+||+||++||+++|+++|+|||
T Consensus 148 -~y~~~~la~qVh~~~ly~~~~Lv~aw~~~t~~~k 181 (183)
T KOG4054|consen 148 -WYLFLVLAVQVHGFQLYFSKKLVDAWFPSTQEKK 181 (183)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhc
Confidence 9999999999999999999999999999999998
No 3
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=65.04 E-value=77 Score=25.99 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=50.3
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHHhhhhccccchhhHH---HHHHHHHHHhhHHHHHHHHhhHHHHHHHhhcCCCCCccc
Q psy8501 70 EELLIPKPLLWEYIWCFSLLVSFLGLSSIRKNNISTMK---KYVYGIVAFGYMPILYAVIYYFHDFWTYITLDPDEDIED 146 (195)
Q Consensus 70 ~~l~ip~p~~WEy~w~~Slip~~~G~~s~~RN~i~~l~---~y~~~~~ifgi~Pl~~g~~~~~~~~~~y~~~~~~~~~~~ 146 (195)
-++++|-+ +++.+-.++.+. .+..+...++ -+......+=+.|...|.++++..+.++
T Consensus 30 l~lPiPGs-------ViGMlLL~l~L~-~~~vk~~~v~~~a~~LL~~m~LfFVPagVGim~~~~ll~~~----------- 90 (141)
T PRK04125 30 LPIPMPAS-------VIGLVLLFVLLC-TKVVKLEQVESLGTALTNNIGFLFVPSGISVINSLGVMSQY----------- 90 (141)
T ss_pred cCCCCcHH-------HHHHHHHHHHHH-hCCcCHHHHHHHHHHHHHHHHHHHhhhHhHHHHhHHHHHHH-----------
Confidence 47789888 888887666654 4555544433 2334444466679999999887755322
Q ss_pred chhhhhcCchHHHHHHHHHHHHHHHHHHHHHH
Q psy8501 147 KEITMWQGYPYALLWYIFIVLALQVHTFSLYF 178 (195)
Q Consensus 147 ~~~~~~~G~P~~~l~Y~f~~~a~QvH~f~lyf 178 (195)
|.|..++.-+--++.+-+=++..-+
T Consensus 91 -------~~~Il~~ivvSTllvl~vtg~v~~~ 115 (141)
T PRK04125 91 -------PVQIIGVIIVATILLLACTGLFSQF 115 (141)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544433
No 4
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=57.75 E-value=14 Score=25.41 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.3
Q ss_pred hHhhhcCCCcchhHHHHHHHHHHHHHh
Q psy8501 68 EIEELLIPKPLLWEYIWCFSLLVSFLG 94 (195)
Q Consensus 68 ~~~~l~ip~p~~WEy~w~~Slip~~~G 94 (195)
-|+|++-|-|.+|-+.+.++++-++.=
T Consensus 12 GI~E~dnplP~ww~~~f~~tivfa~~Y 38 (51)
T PF14715_consen 12 GIRELDNPLPRWWLWLFYGTIVFAVGY 38 (51)
T ss_pred ChhhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 368999999999999998888776543
No 5
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=53.93 E-value=38 Score=23.96 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=26.6
Q ss_pred HhhhHhHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8501 20 QQIASHYQTSVLNKTRLKYTIFFHYLLFFVMLAKLSADI 58 (195)
Q Consensus 20 erVas~Yq~Sa~~KsrLK~l~~~h~ll~l~~~akl~~~~ 58 (195)
--=|||=|.+-. -||-.+++..++|.+||.|+.-|.
T Consensus 23 tlpashaqygfr---llrgif~itlviwt~vwlkllrda 58 (60)
T PF08196_consen 23 TLPASHAQYGFR---LLRGIFLITLVIWTVVWLKLLRDA 58 (60)
T ss_pred ccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334666665543 367889999999999999988654
No 6
>PRK01658 holin-like protein; Validated
Probab=52.73 E-value=1.2e+02 Score=24.13 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=36.6
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHHhhhhccccchhh---HHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q psy8501 70 EELLIPKPLLWEYIWCFSLLVSFLGLSSIRKNNIST---MKKYVYGIVAFGYMPILYAVIYYFHDFW 133 (195)
Q Consensus 70 ~~l~ip~p~~WEy~w~~Slip~~~G~~s~~RN~i~~---l~~y~~~~~ifgi~Pl~~g~~~~~~~~~ 133 (195)
-++.+|-+ +++.+-.++.+ ..++.+... -.-...+...+=+.|...|.+++++.+.
T Consensus 27 l~lpiPGs-------ViGmlLL~~~L-~~~~ik~~~v~~~a~~Ll~~m~llFVPa~VGi~~~~~ll~ 85 (122)
T PRK01658 27 LHLPIPGS-------IIGIFLLLLLL-SFKILKLKWIELGAETLLAELPLFFIPSAVGVMNYGDFLS 85 (122)
T ss_pred cCCCCCHH-------HHHHHHHHHHH-HhCCcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHH
Confidence 47788888 78888766555 444444433 3334444455667799999999877553
No 7
>PF00510 COX3: Cytochrome c oxidase subunit III This family corresponds to chains c and p.; InterPro: IPR000298 Cytochrome c oxidase (1.9.3.1 from EC) is the terminal enzyme of the respiratory chain of mitochondria and many aerobic bacteria. It catalyses the transfer of electrons from reduced cytochrome c to molecular oxygen: 4 cytochrome c+2 + 4 H+ + O2 --> 4 cytochrome c+3 + 2 H2O This reaction is coupled to the pumping of four additional protons across the mitochondrial or bacterial membrane [, ]. Cytochrome c oxidase is an oligomeric enzymatic complex that is located in the mitochondrial inner membrane of eukaryotes and in the plasma membrane of aerobic prokaryotes. The core structure of prokaryotic and eukaryotic cytochrome c oxidase contains three common subunits, I, II and III. In prokaryotes, subunits I and III can be fused and a fourth subunit is sometimes found, whereas in eukaryotes there are a variable number of additional small polypeptidic subunits []. The functional role of subunit III is not yet understood. As the bacterial respiratory systems are branched, they have a number of distinct terminal oxidases, rather than the single cytochrome c oxidase present in the eukaryotic mitochondrial systems. Although the cytochrome o oxidases do not catalyse the cytochrome c but the quinol (ubiquinol) oxidation they belong to the same haem-copper oxidase superfamily as cytochrome c oxidases. Members of this family share sequence similarities in all three core subunits: subunit I is the most conserved subunit, whereas subunit II is the least conserved [, , ].; GO: 0004129 cytochrome-c oxidase activity, 0006123 mitochondrial electron transport, cytochrome c to oxygen, 0016020 membrane; PDB: 1M57_I 1M56_I 2EIL_P 2OCC_C 2EIM_C 2EIK_P 1OCZ_C 2EIJ_C 3AG2_P 1OCC_P ....
Probab=51.15 E-value=43 Score=29.20 Aligned_cols=52 Identities=8% Similarity=0.038 Sum_probs=37.6
Q ss_pred CcchhHHHHH------HHHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHh
Q psy8501 76 KPLLWEYIWC------FSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIY 127 (195)
Q Consensus 76 ~p~~WEy~w~------~Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~ 127 (195)
.+.+|+.+++ .|-++.-.+..+.+|||.+..+.....+.++|+..+..-..|
T Consensus 120 ~~~~~~lp~lnT~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~LG~~Fl~~Q~~E 177 (258)
T PF00510_consen 120 PLNPLGLPLLNTILLLSSSVTVTWAHHALKRGNRKAARLWLLLTILLGLLFLVLQVYE 177 (258)
T ss_dssp -TTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhccchHHHHhHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455776654 344555667788899999999999999988888888765544
No 8
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=49.36 E-value=2.7e+02 Score=29.59 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q psy8501 85 CFSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYYFHDFW 133 (195)
Q Consensus 85 ~~Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~~~~~~ 133 (195)
+.+++|+++-+.-++..-.+.|+.|+.+.+-+++-|.++++..++...+
T Consensus 336 ~yglFPlV~llallp~~g~~vLkgY~~~~iwLqlWppLfAIIN~~m~~~ 384 (942)
T PRK13735 336 AIGIFPLLVLAAVFNKLTLSVLKGYVFALMWLQSWPLLYAILNSAMTFY 384 (942)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777787788899999888888999999999999876444
No 9
>PRK13591 ubiA prenyltransferase; Provisional
Probab=44.65 E-value=2.2e+02 Score=26.12 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=57.9
Q ss_pred ccCCCCCCCchhHhhhHhHHhhHhhhhhHHHHHHHHH--------------------HHHHHHHHHHHHHHH-hhhhhhH
Q psy8501 8 VTGTDGTDFSHRQQIASHYQTSVLNKTRLKYTIFFHY--------------------LLFFVMLAKLSADIL-DRLDIFI 66 (195)
Q Consensus 8 asGTDGSDF~hRerVas~Yq~Sa~~KsrLK~l~~~h~--------------------ll~l~~~akl~~~~l-~~l~i~~ 66 (195)
-+|.|+.-|++|.+-...|..--..-.-++..+++-+ .+...+++-.....+ |-+|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~a~~a~~~~~~a~lL~g~~~~~~~~~~~~L~~~s~~~iNd~~D~ei 85 (307)
T PRK13591 6 FSGSFERIFKRRRKNSNMYKFLNATFELLNSSTLVAFSGALRIHIAFLLLGLQSSILTCIAGGLIIYSVYTLDRALDSEE 85 (307)
T ss_pred eecchHhHhhhhcccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHhhhccchh
Confidence 3678888888887776655432211111222222211 122344445555666 4558888
Q ss_pred HhHhhhcCCCcchhHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHh
Q psy8501 67 LEIEELLIPKPLLWEYIWCFSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIY 127 (195)
Q Consensus 67 ~~~~~l~ip~p~~WEy~w~~Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~ 127 (195)
+.+|+-+-|.|...+- ..++++..++|..-.-+-+ ..++++.+++.|..|
T Consensus 86 D~IN~P~r~~~s~~~a-~~ls~la~llGl~La~~~g----------~~ll~ll~~l~g~lY 135 (307)
T PRK13591 86 DAVNRSELIGSNKKIG-LLVSLLAFLLGTYILAMDG----------MLLLAFLPFITGYLY 135 (307)
T ss_pred hhccCccccccCHHHH-HHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHh
Confidence 8888877777765553 3455555565654432211 123456666666443
No 10
>cd00386 Heme_Cu_Oxidase_III_like Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex
Probab=41.38 E-value=1.9e+02 Score=23.38 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=25.0
Q ss_pred hhhhccccchhhHHHHHHHHHHHhhHHHHHHHH
Q psy8501 94 GLSSIRKNNISTMKKYVYGIVAFGYMPILYAVI 126 (195)
Q Consensus 94 G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~ 126 (195)
...+.+|||.+..+.....+.++|+.-+.....
T Consensus 71 a~~~~~~~~~~~~~~~L~~t~~lg~~Fl~~q~~ 103 (183)
T cd00386 71 ASLAARRGNRKKARLWLLLTILLGLAFLGLQAY 103 (183)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888889999988888888876654433
No 11
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=40.12 E-value=80 Score=23.53 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy8501 156 PYALLWYIFIVLALQVHTFSLYFSNNLIQCWRLRAAIKK 194 (195)
Q Consensus 156 P~~~l~Y~f~~~a~QvH~f~lyf~~kL~~aW~~~~~~~~ 194 (195)
|+..+-|+++ +-.-.-..+-++|+||.++=..+..|+|
T Consensus 19 P~~Fl~~vll-~LtPlfiisa~lSwkLaK~ie~~ere~K 56 (74)
T PF15086_consen 19 PYEFLTTVLL-ILTPLFIISAVLSWKLAKAIEKEEREKK 56 (74)
T ss_pred hHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555433 3334455788999999999887665554
No 12
>smart00814 Alpha_TIF Alpha trans-inducing protein (Alpha-TIF). Alpha-TIF (VP16) from Herpes Simplex virus is an essential tegument protein involved in the transcriptional activation of viral immediate early (IE) promoters (alpha genes) during the lytic phase of viral infection. VP16 associates with cellular transcription factors to enhance transcription rates, including the general transcription factor TFIIB and the transcriptional coactivator PC4. The N-terminal residues of VP16 confer specificity for the IE genes, while the C-terminal residues are responsible for transcriptional activation. Within the C-terminal region are two activation regions that can independently and cooperatively activate transcription. VP16 forms a transcriptional regulatory complex with two cellular proteins, the POU-domain transcription factor Oct-1 and the cell-proliferation factor HCF-1. VP16 is an alpha/beta protein with an unusual fold. Other transcription factors may have a similar topology.
Probab=37.93 E-value=66 Score=30.31 Aligned_cols=59 Identities=34% Similarity=0.450 Sum_probs=39.9
Q ss_pred CCCCcccCCCCCC--CchhHhhhHhHHhhHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhh
Q psy8501 3 SRGMYVTGTDGTD--FSHRQQIASHYQTSVLNKTRLKYTIFFHYLLFFV--MLAKLSADILDRLDIF 65 (195)
Q Consensus 3 SrG~rasGTDGSD--F~hRerVas~Yq~Sa~~KsrLK~l~~~h~ll~l~--~~akl~~~~l~~l~i~ 65 (195)
+||-|..|-|. | =+.|+-|+++|.+=+. ||-+++++|.-+.+. +.-++.++..++=|+|
T Consensus 164 ~rg~r~~~~~~-~~~~~~r~~i~~rYYRE~A---rlArlLylHLYlsvtRevswrl~A~Q~~~q~vF 226 (356)
T smart00814 164 SRGARALGRDR-DLQERLRQLIAERYYREAA---RLARLLYLHLYLSVTREVSWRLHAQQVMRQDVF 226 (356)
T ss_pred ccchhhccccH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 45777788775 4 3568889999988764 677899999988773 2234445555444443
No 13
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=36.35 E-value=1.9e+02 Score=22.04 Aligned_cols=16 Identities=38% Similarity=0.822 Sum_probs=11.4
Q ss_pred hcCchHHHHHHHHHHH
Q psy8501 152 WQGYPYALLWYIFIVL 167 (195)
Q Consensus 152 ~~G~P~~~l~Y~f~~~ 167 (195)
..|+++.+.|-.+++.
T Consensus 148 ~~gwSf~la~~a~~~~ 163 (172)
T PF13903_consen 148 SYGWSFWLAWVAFILL 163 (172)
T ss_pred EECHHHHHHHHHHHHH
Confidence 3488888888776654
No 14
>TIGR02897 QoxC cytochrome aa3 quinol oxidase, subunit III. This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=36.28 E-value=2.5e+02 Score=23.34 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=32.0
Q ss_pred HHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhh
Q psy8501 87 SLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYY 128 (195)
Q Consensus 87 Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~ 128 (195)
|-++.-.+..+.+|+|.+..+..+..+.++|+..+..-..|+
T Consensus 65 SS~~~~~A~~a~~~~~~~~~~~~L~~tl~lG~~Fl~~q~~E~ 106 (190)
T TIGR02897 65 SSFTCGIAIYEMRKENQKLMMFWMIITLLLGAGFVGFEIYEF 106 (190)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566778899999999999999999988876665554
No 15
>PF13239 2TM: 2TM domain
Probab=36.27 E-value=89 Score=22.50 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhhhhhh
Q psy8501 164 FIVLALQVHTFSLYFS-NNLIQCWRLRAAIK 193 (195)
Q Consensus 164 f~~~a~QvH~f~lyf~-~kL~~aW~~~~~~~ 193 (195)
...+++-+|++..|-. ..+-+.|..+..+|
T Consensus 49 ~Wgi~L~~h~~~vf~~~~~~~~~We~rki~k 79 (83)
T PF13239_consen 49 GWGIGLAIHALKVFGSKYFFGKDWEERKIQK 79 (83)
T ss_pred HHHHHHHHHHHHHHcccccccchHHHHHHHH
Confidence 5667889999998622 23334888776655
No 16
>cd02863 Ubiquinol_oxidase_III Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.
Probab=35.70 E-value=2.5e+02 Score=23.22 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhhH
Q psy8501 87 SLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYYF 129 (195)
Q Consensus 87 Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~~ 129 (195)
|=+..-.+..+.+|||.+..+..+..+.++|++-+.....|+.
T Consensus 63 SS~~~~~a~~a~~~~~~~~~~~~L~~t~~lG~~Fl~~q~~E~~ 105 (186)
T cd02863 63 SSFTCGLAMIAMNKNNKKKVILWLIITFLLGLGFVGMEIYEFH 105 (186)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666789999999999999999999988877766653
No 17
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.24 E-value=2e+02 Score=23.60 Aligned_cols=36 Identities=14% Similarity=0.392 Sum_probs=25.0
Q ss_pred HHHHhhcCCCCCcccchhhhhcCchHHHHHHHHHHHHHHHHHHH
Q psy8501 132 FWTYITLDPDEDIEDKEITMWQGYPYALLWYIFIVLALQVHTFS 175 (195)
Q Consensus 132 ~~~y~~~~~~~~~~~~~~~~~~G~P~~~l~Y~f~~~a~QvH~f~ 175 (195)
++.|++|.... =|+.+....+.-+++++++|..-++
T Consensus 34 ~~~Y~r~r~~t--------KyRDL~II~~L~ll~l~giq~~~y~ 69 (149)
T PF11694_consen 34 FIKYLRNRLDT--------KYRDLSIIALLLLLLLIGIQYSDYQ 69 (149)
T ss_pred HHHHHHhcCcc--------hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 36788877652 2456677777888888888877654
No 18
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=34.72 E-value=44 Score=29.48 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=27.0
Q ss_pred HhHhhhcCCCcchhHHHHHHHHHHHHHhhhhcccc
Q psy8501 67 LEIEELLIPKPLLWEYIWCFSLLVSFLGLSSIRKN 101 (195)
Q Consensus 67 ~~~~~l~ip~p~~WEy~w~~Slip~~~G~~s~~RN 101 (195)
.-|+|++-|-|.||-+.|.+++|-++.=+...|-+
T Consensus 17 dgi~E~~n~~P~ww~~~f~~~i~~~~~y~~~yp~~ 51 (285)
T TIGR00782 17 DGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAW 51 (285)
T ss_pred CChhhhcCCCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34789999999999999999888776555554444
No 19
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=34.57 E-value=2.4e+02 Score=22.64 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHH
Q psy8501 85 CFSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPI 121 (195)
Q Consensus 85 ~~Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl 121 (195)
.+|.+..++|+...+|.|.+.=|..|..++.++..=+
T Consensus 13 ~~s~~ll~~g~~~Ir~~~~~~Hr~~Ml~a~~ls~lFl 49 (133)
T PF04238_consen 13 AISAVLLLIGWYFIRRGRIKLHRKLMLTAFVLSALFL 49 (133)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4588888999999999999999999998887655443
No 20
>PF06432 GPI2: Phosphatidylinositol N-acetylglucosaminyltransferase; InterPro: IPR009450 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively.; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=34.11 E-value=2.7e+02 Score=24.78 Aligned_cols=25 Identities=16% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8501 161 WYIFIVLALQVHTFSLYFSNNLIQC 185 (195)
Q Consensus 161 ~Y~f~~~a~QvH~f~lyf~~kL~~a 185 (195)
-+.|+++|+|++++.-.+-+++-+.
T Consensus 195 VF~lll~ai~lF~l~P~~r~~l~~~ 219 (282)
T PF06432_consen 195 VFALLLFAIQLFALFPIFRRRLRRH 219 (282)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3667778899998888887776543
No 21
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=33.81 E-value=32 Score=27.04 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=28.8
Q ss_pred HHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhh
Q psy8501 88 LLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYY 128 (195)
Q Consensus 88 lip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~ 128 (195)
+|| |.=++=.+|-+-+++++|..|+. +.++-.+.|+++.
T Consensus 7 LIP-fAKEmlaQkPsrkmvKlYvLGSv-LA~~Gvv~GLVEt 45 (102)
T PF15103_consen 7 LIP-FAKEMLAQKPSRKMVKLYVLGSV-LAFFGVVIGLVET 45 (102)
T ss_pred HHH-HHHHHHhcCCCCCeEeeehhhhH-HHHHHHHHHHHHH
Confidence 345 33445556777899999999998 6888888887764
No 22
>PRK01821 hypothetical protein; Provisional
Probab=33.76 E-value=2.6e+02 Score=22.63 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=38.8
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHHhhhhccccchhhHHH---HHHHHHHHhhHHHHHHHHhhHHHH
Q psy8501 70 EELLIPKPLLWEYIWCFSLLVSFLGLSSIRKNNISTMKK---YVYGIVAFGYMPILYAVIYYFHDF 132 (195)
Q Consensus 70 ~~l~ip~p~~WEy~w~~Slip~~~G~~s~~RN~i~~l~~---y~~~~~ifgi~Pl~~g~~~~~~~~ 132 (195)
-++++|-+ +++.+-.++++.. ++.+...++. +......+=+.|...|.++++..+
T Consensus 32 l~lpiPGs-------ViGmlLLf~~L~~-~~vk~~~v~~~a~~LL~~m~LfFVPa~VGim~~~~ll 89 (133)
T PRK01821 32 LPITIPGS-------IIGMLILFVLLAL-QILPAKWVKPGCSLLIRYMALLFVPIGVGVMQYYDLL 89 (133)
T ss_pred cCCCCcHH-------HHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46788888 8888887777754 6666655443 444444566779999999887755
No 23
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=33.32 E-value=1.5e+02 Score=22.82 Aligned_cols=65 Identities=25% Similarity=0.425 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHhhcCCCCCcccchhhhhcCchHHHHHHHHHHHHHHHHHHHHH
Q psy8501 104 STMKKYVYGIVAFGYMPILYAVIYYFHDFWTYITLDPDEDIEDKEITMWQGYPYALLWYIFIVLALQVHTFSLY 177 (195)
Q Consensus 104 ~~l~~y~~~~~ifgi~Pl~~g~~~~~~~~~~y~~~~~~~~~~~~~~~~~~G~P~~~l~Y~f~~~a~QvH~f~ly 177 (195)
..++-|+-|.+++|+.=++.++..-|-|.- +++.. . ....|+-.+..-..- -+++.+-+-.|++|
T Consensus 5 ~~i~ny~s~vli~GIiLL~~ACIFAfidFS---K~~s~---~--~~~~wRalSii~FIl-G~vl~lGilifs~y 69 (91)
T PHA02680 5 ETLKSYYSGVLICGVLLLTAACVFAFVDFS---KNTSN---V--TDYVWRALSVTCFIV-GAVLLLGLFVFSMY 69 (91)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhh---ccCCC---C--cchhHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 356677788888888888888777666553 32211 0 233676655443222 22333446667766
No 24
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=31.15 E-value=16 Score=28.46 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHH
Q psy8501 88 LLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYA 124 (195)
Q Consensus 88 lip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g 124 (195)
++.+++|..+..|+|...+..|.+..+++-+.-+..+
T Consensus 57 ~~~~~~G~~~~~~~~~~~l~~y~~~~~~~~v~~~~~~ 93 (221)
T PF00335_consen 57 LIISFLGCIGACRKNRCLLIIYIILLILLFVLELVVG 93 (221)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHhhcCcccccccccchhhHHHHHHHHH
Confidence 4567889999999999999999888776444444433
No 25
>COG1845 CyoC Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]
Probab=30.11 E-value=1.6e+02 Score=25.58 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=32.3
Q ss_pred HHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHh
Q psy8501 87 SLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIY 127 (195)
Q Consensus 87 Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~ 127 (195)
|=+..-++..+.+|||.+.++..+..+.++|++=+.--..|
T Consensus 86 SS~t~~~A~~a~~~~~~~~~~~wL~~T~lLG~~Fv~~q~yE 126 (209)
T COG1845 86 SSFTCGLAVHALRRGNRKGARAWLLLTLLLGAAFVGGQLYE 126 (209)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555677899999999999999999999888766544443
No 26
>PHA03380 transactivating tegument protein VP16; Provisional
Probab=28.93 E-value=1.3e+02 Score=29.03 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=37.6
Q ss_pred CCcccCCCCCC--C--chhHhhhHhHHhhHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhh
Q psy8501 5 GMYVTGTDGTD--F--SHRQQIASHYQTSVLNKTRLKYTIFFHYLLFFV--MLAKLSADILDRLDIF 65 (195)
Q Consensus 5 G~rasGTDGSD--F--~hRerVas~Yq~Sa~~KsrLK~l~~~h~ll~l~--~~akl~~~~l~~l~i~ 65 (195)
+.|-++.++.| . +.|+-|+++|.+=+. ||-+++++|.-+.+. +.-++.++..++=|+|
T Consensus 181 ~~Rg~~~~~~~~~~~~~~r~~I~~rYYRE~A---rlArlLylHLYLsvtRevswrl~A~Q~~~q~vF 244 (432)
T PHA03380 181 LHRGARAGDRDRDLQERLRQLIADRYYREAA---RLARLLYLHLYLSVTREVSWRLHASQVMRQDVF 244 (432)
T ss_pred ccccccccCccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 66666666554 3 357789999988764 677899999988773 2234445555444443
No 27
>PF04193 PQ-loop: PQ loop repeat
Probab=28.31 E-value=1.8e+02 Score=19.18 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=23.2
Q ss_pred HHhhHHHHHHHHhhHHHHHHHhhcCCC
Q psy8501 115 AFGYMPILYAVIYYFHDFWTYITLDPD 141 (195)
Q Consensus 115 ifgi~Pl~~g~~~~~~~~~~y~~~~~~ 141 (195)
++|+..++..+...+|.+++.++++++
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~ 30 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKST 30 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHcccc
Confidence 467777888888999999999998887
No 28
>cd02865 Heme_Cu_Oxidase_III_2 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=28.19 E-value=3.2e+02 Score=22.36 Aligned_cols=42 Identities=10% Similarity=-0.046 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhh
Q psy8501 87 SLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYY 128 (195)
Q Consensus 87 Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~ 128 (195)
|-+....+..+.+|+|-+..+.....+.++|+.-+..-..|+
T Consensus 62 Ss~~~~~A~~a~~~~~~~~~~~~L~~t~~Lg~~F~~~q~~E~ 103 (184)
T cd02865 62 SSVAMQWARRAARRNRRVLARLGLALAGALALAFLAGQLLAW 103 (184)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667778889999999988888888887776655554
No 29
>PRK11874 petL cytochrome b6-f complex subunit PetL; Reviewed
Probab=27.98 E-value=1.3e+02 Score=18.76 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8501 157 YALLWYIFIVLALQVHTFSLYFSNNLIQ 184 (195)
Q Consensus 157 ~~~l~Y~f~~~a~QvH~f~lyf~~kL~~ 184 (195)
++++-|+.++.+.-.-++.+||+-|-+|
T Consensus 1 mgvv~y~~~l~~~~g~A~gl~fgLrsiK 28 (30)
T PRK11874 1 MGIVFFLGYLGVFTGIALGLYFGLRAAK 28 (30)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577888888888888999999877554
No 30
>KOG1558|consensus
Probab=27.94 E-value=1.2e+02 Score=27.98 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=24.6
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCCcccchhhhhcCchHH
Q psy8501 121 ILYAVIYYFHDFWTYITLDPDEDIEDKEITMWQGYPYA 158 (195)
Q Consensus 121 l~~g~~~~~~~~~~y~~~~~~~~~~~~~~~~~~G~P~~ 158 (195)
+.-|++.++||+.+-+.+... ....|..||.+
T Consensus 65 LaT~FlH~Lpd~~E~l~~~~~------~~~~~~~fp~~ 96 (327)
T KOG1558|consen 65 LATGFLHLLPDAFEALESLCL------ADNPWGKFPFA 96 (327)
T ss_pred HHHHHHHhChhHHHHhhcccc------cCCCCcCCChH
Confidence 566789999999999987776 24456678876
No 31
>cd02864 Heme_Cu_Oxidase_III_1 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=27.71 E-value=1.9e+02 Score=24.23 Aligned_cols=44 Identities=7% Similarity=-0.018 Sum_probs=35.4
Q ss_pred HHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhhHH
Q psy8501 87 SLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYYFH 130 (195)
Q Consensus 87 Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~~~ 130 (195)
|-++.-.+..+.+|||.+..+.....+.++|++.+.....|+..
T Consensus 73 SS~~~~~A~~a~~~~~~~~~~~~L~~t~~LG~~Fl~~q~~E~~~ 116 (202)
T cd02864 73 SSGTMAMAVNFGYRGNRKAAARLMLATALLGATFVGMQAFEWTK 116 (202)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555677778899999999999999999999988877666543
No 32
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=25.79 E-value=3.7e+02 Score=23.40 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhh
Q psy8501 85 CFSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYY 128 (195)
Q Consensus 85 ~~Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~ 128 (195)
+-++.-...+..+-+-|+ .|+.-.+-+.||..+.++-|+++|
T Consensus 239 l~~l~d~~~~~~s~~~N~--~mk~LTvvt~IflP~t~IaGiyGM 280 (318)
T TIGR00383 239 LSSLMDLYLSLVNNKMNE--IMKILTVVSTIFIPLTFIAGIYGM 280 (318)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346777777888887775 688888888888888888887775
No 33
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=25.54 E-value=3.9e+02 Score=22.12 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=13.1
Q ss_pred CCCchhHhhhHhHHh
Q psy8501 14 TDFSHRQQIASHYQT 28 (195)
Q Consensus 14 SDF~hRerVas~Yq~ 28 (195)
.||.||+|+.++|-.
T Consensus 28 rd~~y~~R~~~~Y~~ 42 (141)
T PRK13743 28 RDYDYERRVSDIYFD 42 (141)
T ss_pred hhHHHHHHHHHHHHH
Confidence 489999999999964
No 34
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=25.29 E-value=2.6e+02 Score=22.55 Aligned_cols=55 Identities=24% Similarity=0.437 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHhhhcCCCcchhHHHHHH----HHHHHHHhhh
Q psy8501 36 LKYTIFFHYLLFFVMLAKLSADILDRLDIFILEIEELLIPKPLLWEYIWCF----SLLVSFLGLS 96 (195)
Q Consensus 36 LK~l~~~h~ll~l~~~akl~~~~l~~l~i~~~~~~~l~ip~p~~WEy~w~~----Slip~~~G~~ 96 (195)
-|-....|++--.+..+-+....+. ..-+++....-..||..|.. ++.|.+.|..
T Consensus 5 ~~~m~~iQ~igii~~l~~m~~~~~r------~k~~k~s~~~ll~W~~~wv~vlifal~P~fs~~I 63 (121)
T COG2456 5 EKLMYTIQYIGIIFILFLMIYVFFR------LKRRKLSLSDLLFWEAFWVFVLIFALFPEFSGEI 63 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCCccchHHHHHHHHHHHHHHhcchHHHHH
Confidence 3444555555444444444444331 11156666667889998854 4555555543
No 35
>MTH00052 COX3 cytochrome c oxidase subunit III; Provisional
Probab=24.59 E-value=2.2e+02 Score=25.15 Aligned_cols=53 Identities=9% Similarity=-0.106 Sum_probs=34.8
Q ss_pred CcchhHHHHHHHH------HHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhh
Q psy8501 76 KPLLWEYIWCFSL------LVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYY 128 (195)
Q Consensus 76 ~p~~WEy~w~~Sl------ip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~ 128 (195)
.+.+|+.+.+-++ +..-.+..+.++||-+..+.....+.++|+.-+....+|+
T Consensus 124 ~~~~~~~pllnT~iLl~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti~LG~~Fl~~Q~~Ey 182 (262)
T MTH00052 124 PLNPFSVPLLNTAVLLSSGATVTWAHHGIISGKRKEAIIGLALTVALGLLFTGLQAMEY 182 (262)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455776653333 3334456678888888888888888888888776655443
No 36
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=23.22 E-value=64 Score=20.93 Aligned_cols=12 Identities=33% Similarity=0.985 Sum_probs=10.5
Q ss_pred CchHHHHHHHHH
Q psy8501 154 GYPYALLWYIFI 165 (195)
Q Consensus 154 G~P~~~l~Y~f~ 165 (195)
|||+++-.|+.+
T Consensus 7 GFPi~va~yLL~ 18 (38)
T PF12841_consen 7 GFPIAVAIYLLV 18 (38)
T ss_pred CcHHHHHHHHHH
Confidence 999999999765
No 37
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=22.80 E-value=3.5e+02 Score=23.57 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHH
Q psy8501 155 YPYALLWYIFIVLAL 169 (195)
Q Consensus 155 ~P~~~l~Y~f~~~a~ 169 (195)
+-.|-+||+++.+..
T Consensus 78 ~~~Gglwy~~lsl~~ 92 (284)
T PF12805_consen 78 FLAGGLWYLLLSLLW 92 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667889998886654
No 38
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=22.67 E-value=4.6e+02 Score=22.38 Aligned_cols=20 Identities=5% Similarity=-0.159 Sum_probs=14.7
Q ss_pred HHHHHhhHHHHHHHhhcCCC
Q psy8501 122 LYAVIYYFHDFWTYITLDPD 141 (195)
Q Consensus 122 ~~g~~~~~~~~~~y~~~~~~ 141 (195)
.-++++++||+.+...+.+.
T Consensus 51 ~~a~~hLLPea~~~~~~~~~ 70 (317)
T PF02535_consen 51 GTAFLHLLPEAIEALESSGC 70 (317)
T ss_pred HHHHHHcCchhhcccccccc
Confidence 34567999999999865443
No 39
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=22.12 E-value=40 Score=25.89 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=13.1
Q ss_pred CCCchhHhhhHhHHhhHhh
Q psy8501 14 TDFSHRQQIASHYQTSVLN 32 (195)
Q Consensus 14 SDF~hRerVas~Yq~Sa~~ 32 (195)
.--+=||+|||+|-=....
T Consensus 61 ARigGrE~VaDRYwWvkh~ 79 (89)
T PF10762_consen 61 ARIGGREKVADRYWWVKHF 79 (89)
T ss_pred ccccCcchhhhhHHHHHhh
Confidence 3345599999999655443
No 40
>PRK01318 membrane protein insertase; Provisional
Probab=21.32 E-value=4.7e+02 Score=25.65 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=14.8
Q ss_pred hHhhhcCCCcchhHHHHHHHHHHHHHhh
Q psy8501 68 EIEELLIPKPLLWEYIWCFSLLVSFLGL 95 (195)
Q Consensus 68 ~~~~l~ip~p~~WEy~w~~Slip~~~G~ 95 (195)
++..+..|.|+ |++.++++|.+.|.
T Consensus 423 Wi~DLs~~Dp~---~il~~~~lPil~~~ 447 (521)
T PRK01318 423 WIHDLSAPDPY---FILHIGLLPILMGI 447 (521)
T ss_pred eeccccccccc---hhHHHHHHHHHHHH
Confidence 56677777774 33345555665554
No 41
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=21.30 E-value=5.9e+02 Score=23.29 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=25.5
Q ss_pred CCCCCCCchhHhhhHhHHhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8501 10 GTDGTDFSHRQQIASHYQTSVLNKTRLKYTIFFHYLLFFVMLAKLS 55 (195)
Q Consensus 10 GTDGSDF~hRerVas~Yq~Sa~~KsrLK~l~~~h~ll~l~~~akl~ 55 (195)
=.+|-|.+|++ +-.||-.....-+++-+.+.+|+++.++++.-+.
T Consensus 92 ~~~geD~RY~~-l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~ 136 (272)
T COG3752 92 RGKGEDPRYVN-LRQRWGKTIYPLKALFIVFGLQALLLFILALPIY 136 (272)
T ss_pred cCCCCChHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788988875 3445555444444455555556666666553333
No 42
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=21.26 E-value=1.1e+02 Score=25.44 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=24.4
Q ss_pred cCCCcchhHHHHHH-HHHHHHHhhhhccccc
Q psy8501 73 LIPKPLLWEYIWCF-SLLVSFLGLSSIRKNN 102 (195)
Q Consensus 73 ~ip~p~~WEy~w~~-Slip~~~G~~s~~RN~ 102 (195)
+.|++.+|...|.+ ++++.+.|+.-.+|.|
T Consensus 113 ~~~~~l~wDl~wl~~g~lll~~G~~l~r~~r 143 (143)
T PF10002_consen 113 PGPNPLPWDLGWLAFGALLLLAGWLLLRRGR 143 (143)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 46788999999965 8889999988877754
No 43
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=20.63 E-value=2e+02 Score=18.75 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=20.0
Q ss_pred HHHHhhHHHHHHHHhhHHHHHHHhhcCCC
Q psy8501 113 IVAFGYMPILYAVIYYFHDFWTYITLDPD 141 (195)
Q Consensus 113 ~~ifgi~Pl~~g~~~~~~~~~~y~~~~~~ 141 (195)
..++|+.|+-.. ..|-.++..++.|+.
T Consensus 8 GiVLGlipiTl~--GlfvaAylQYrRg~~ 34 (37)
T PRK00665 8 GIVLGLIPVTLA--GLFVAAWNQYKRGNQ 34 (37)
T ss_pred hHHHHhHHHHHH--HHHHHHHHHHhcccc
Confidence 344788888766 778888888887764
No 44
>PF07274 DUF1440: Protein of unknown function (DUF1440); InterPro: IPR009898 This family contains a number of bacterial proteins of unknown function approximately 180 residues long. These are possibly integral membrane proteins.
Probab=20.53 E-value=1.7e+02 Score=23.92 Aligned_cols=17 Identities=29% Similarity=0.841 Sum_probs=13.5
Q ss_pred hhhhcCchHHHHHHHHH
Q psy8501 149 ITMWQGYPYALLWYIFI 165 (195)
Q Consensus 149 ~~~~~G~P~~~l~Y~f~ 165 (195)
+.+|||-+++++.++.+
T Consensus 80 i~l~~G~~fGi~~~i~~ 96 (135)
T PF07274_consen 80 IKLWQGAAFGIVVWIAF 96 (135)
T ss_pred cchhhhHHHHHHHHHHH
Confidence 45899999998888654
No 45
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=20.49 E-value=2e+02 Score=18.78 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=19.8
Q ss_pred HHHhhHHHHHHHHhhHHHHHHHhhcCCC
Q psy8501 114 VAFGYMPILYAVIYYFHDFWTYITLDPD 141 (195)
Q Consensus 114 ~ifgi~Pl~~g~~~~~~~~~~y~~~~~~ 141 (195)
.++|+.|+-.. ..|-.++..++.|+.
T Consensus 9 iVLGlipvTl~--GlfvaAylQYrRg~~ 34 (37)
T CHL00008 9 IVLGLIPITLA--GLFVTAYLQYRRGDQ 34 (37)
T ss_pred HHHHhHHHHHH--HHHHHHHHHHhhccc
Confidence 44788888766 778888888887764
No 46
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=20.35 E-value=8.6e+02 Score=24.24 Aligned_cols=35 Identities=14% Similarity=0.338 Sum_probs=23.6
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHHhhhhccccchh
Q psy8501 70 EELLIPKPLLWEYIWCFSLLVSFLGLSSIRKNNIS 104 (195)
Q Consensus 70 ~~l~ip~p~~WEy~w~~Slip~~~G~~s~~RN~i~ 104 (195)
+-.+.|..++..+.|+++++.++++..++.+.+-.
T Consensus 329 ~gf~~p~~~~~R~~fi~~f~~~~~~~~~l~~~~~~ 363 (843)
T PF09586_consen 329 NGFSYPNGFPYRWSFIFIFLISLLAARGLEELKKI 363 (843)
T ss_pred hCCccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56778886667777777777777666666644333
No 47
>KOG3882|consensus
Probab=20.01 E-value=5.2e+02 Score=21.53 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHhhhc-C-CCcchhHHHHH--HHHHHHHHhhhhccccchhhHHHHHHHHH
Q psy8501 39 TIFFHYLLFFVMLAKLSADILDRLDIFILEIEELL-I-PKPLLWEYIWC--FSLLVSFLGLSSIRKNNISTMKKYVYGIV 114 (195)
Q Consensus 39 l~~~h~ll~l~~~akl~~~~l~~l~i~~~~~~~l~-i-p~p~~WEy~w~--~Slip~~~G~~s~~RN~i~~l~~y~~~~~ 114 (195)
++++..+.|+++.+.+...+--+.|-... .++. . .....|-.+=+ +-++..++|..+.-|-+..+|..|.+..+
T Consensus 13 lf~~N~~~~l~G~~ll~~giw~~~~~~~~--~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~~l~ 90 (237)
T KOG3882|consen 13 LFLLNLLFWLLGLLLLAVGIWLLADKGFL--SSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYFILLL 90 (237)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeEeccch--hhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHHHHH
Confidence 45667778888777777766533322110 1111 0 01112333222 23455677767777777779999988888
Q ss_pred HHhhHHHHHHHH
Q psy8501 115 AFGYMPILYAVI 126 (195)
Q Consensus 115 ifgi~Pl~~g~~ 126 (195)
++-++-+..|..
T Consensus 91 l~~i~e~~~~i~ 102 (237)
T KOG3882|consen 91 LLFIAELAAGIL 102 (237)
T ss_pred HHHHHHHHHHHH
Confidence 866666555543
Done!