Query psy8501
Match_columns 195
No_of_seqs 77 out of 79
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 20:34:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 29.4 96 0.0033 26.4 5.9 42 85-128 260-301 (339)
2 1v54_C Cytochrome C oxidase po 26.6 1.4E+02 0.0046 25.1 6.2 51 77-127 124-180 (261)
3 16vp_A Protein (VP16, VMW65, A 25.5 52 0.0018 29.8 3.5 59 5-66 144-208 (366)
4 2iub_A CORA, divalent cation t 22.5 93 0.0032 26.8 4.6 41 86-128 285-325 (363)
5 1m56_C Cytochrome C oxidase; m 22.1 1.4E+02 0.0049 25.1 5.5 48 77-124 128-182 (266)
6 1qle_C Cytochrome C oxidase po 22.0 1.5E+02 0.005 25.2 5.6 56 76-138 134-196 (273)
7 2c9l_Y EB1, zebra, BZLF1 trans 20.8 51 0.0017 22.5 2.0 7 18-24 7-13 (63)
8 3mk7_C Cytochrome C oxidase, C 15.5 87 0.003 26.4 2.7 33 67-99 45-77 (311)
9 1q90_G Cytochrome B6F complex 15.3 2.2E+02 0.0076 17.7 3.8 26 114-141 9-34 (37)
10 1fft_C Ubiquinol oxidase; elec 11.5 82 0.0028 25.3 1.3 49 80-128 66-120 (204)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=29.43 E-value=96 Score=26.38 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhh
Q psy8501 85 CFSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYY 128 (195)
Q Consensus 85 ~~Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~ 128 (195)
+-++.-...+..+.+-|++ |+...+-+.||..+.++-|++.|
T Consensus 260 l~~l~d~~~s~is~~~N~~--mk~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 260 LTSMMDITLSLENIKMNQI--MKILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhccC
Confidence 3466777788888888864 67777778888888888887665
No 2
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=26.57 E-value=1.4e+02 Score=25.13 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=34.5
Q ss_pred cchhHHHHHHH------HHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHh
Q psy8501 77 PLLWEYIWCFS------LLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIY 127 (195)
Q Consensus 77 p~~WEy~w~~S------lip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~ 127 (195)
+.+|+.+.+-+ -+..-.+.-+.+|||.+..+.....+.++|+.-+..-..|
T Consensus 124 ~~~~~~pllnT~iLL~Ss~t~~~A~~a~~~~~~~~~~~~L~~T~~LG~~F~~~Q~~E 180 (261)
T 1v54_C 124 LNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASE 180 (261)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566665443 3344455667889999999998888888887766554433
No 3
>16vp_A Protein (VP16, VMW65, ATIF); transcriptional regulatory protein; 2.10A {Human herpesvirus 1} SCOP: d.180.1.1
Probab=25.49 E-value=52 Score=29.75 Aligned_cols=59 Identities=29% Similarity=0.371 Sum_probs=37.0
Q ss_pred CCcccCCCCCCC----chhHhhhHhHHhhHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhH
Q psy8501 5 GMYVTGTDGTDF----SHRQQIASHYQTSVLNKTRLKYTIFFHYLLFFV--MLAKLSADILDRLDIFI 66 (195)
Q Consensus 5 G~rasGTDGSDF----~hRerVas~Yq~Sa~~KsrLK~l~~~h~ll~l~--~~akl~~~~l~~l~i~~ 66 (195)
+.|-++.++-|- +.|+-|+++|.+-+ +||-+++++|.-+.+. +.-++.++..++=|+|.
T Consensus 144 ~~r~~~~~~~~~~~~~~~r~~I~~rYYRE~---ArlArlLylHLYls~tRevswrL~A~Q~~~q~vF~ 208 (366)
T 16vp_A 144 LHRQAHMRGRDRDLGEMLRATIADRYYRET---ARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFD 208 (366)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHT
T ss_pred hccccccccchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 334444444443 46788999998866 4677899999988773 23345555555545443
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.54 E-value=93 Score=26.79 Aligned_cols=41 Identities=20% Similarity=0.145 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhh
Q psy8501 86 FSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYY 128 (195)
Q Consensus 86 ~Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~ 128 (195)
-++.-...+..+.+-|+ .|+.-.+-+.||..+.++-|++.|
T Consensus 285 ~~l~d~~~s~is~~~N~--imk~LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 285 SGLLDVYLSSVSNKTNE--VMKVLTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 36667777888888875 466777777777777777776554
No 5
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=22.09 E-value=1.4e+02 Score=25.10 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=31.6
Q ss_pred cchhHHHHHHH------HHHHHHhhhhccc-cchhhHHHHHHHHHHHhhHHHHHH
Q psy8501 77 PLLWEYIWCFS------LLVSFLGLSSIRK-NNISTMKKYVYGIVAFGYMPILYA 124 (195)
Q Consensus 77 p~~WEy~w~~S------lip~~~G~~s~~R-N~i~~l~~y~~~~~ifgi~Pl~~g 124 (195)
+.+|+.+.+-+ -+..-.+.-+.+| ||.+..+.....+.++|+.-+..-
T Consensus 128 ~~~~~lpllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~L~~Ti~LG~~F~~lQ 182 (266)
T 1m56_C 128 FDPWHLPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQ 182 (266)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44576655433 3344445567778 888888888888888777666444
No 6
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=22.05 E-value=1.5e+02 Score=25.19 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=36.0
Q ss_pred CcchhHHHHHHHHH------HHHHhhhhc-cccchhhHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHhhc
Q psy8501 76 KPLLWEYIWCFSLL------VSFLGLSSI-RKNNISTMKKYVYGIVAFGYMPILYAVIYYFHDFWTYITL 138 (195)
Q Consensus 76 ~p~~WEy~w~~Sli------p~~~G~~s~-~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~~~~~~~y~~~ 138 (195)
.+.+|+.+.+-+++ ..-.+.-+. +|||.+..+.....+.++|+.-+.. +++||...
T Consensus 134 ~~~~~~lpllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~L~~Ti~LG~~F~~l-------Q~~Ey~~~ 196 (273)
T 1qle_C 134 TFDPWHLPLINTLILLLSGVAVTWAHHAFVLEGDRKTTINGLIVAVILGVCFTGL-------QAYEYSHA 196 (273)
T ss_dssp CCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTHHHHTHHHHHHHH-------HHHHGGGC
T ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHC
Confidence 34557766544433 334455567 8889888888888888887766644 44556553
No 7
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=20.81 E-value=51 Score=22.47 Aligned_cols=7 Identities=14% Similarity=0.444 Sum_probs=3.8
Q ss_pred hhHhhhH
Q psy8501 18 HRQQIAS 24 (195)
Q Consensus 18 hRerVas 24 (195)
||.|||+
T Consensus 7 yknr~as 13 (63)
T 2c9l_Y 7 YKNRVAA 13 (63)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 8
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=15.49 E-value=87 Score=26.43 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=27.7
Q ss_pred HhHhhhcCCCcchhHHHHHHHHHHHHHhhhhcc
Q psy8501 67 LEIEELLIPKPLLWEYIWCFSLLVSFLGLSSIR 99 (195)
Q Consensus 67 ~~~~~l~ip~p~~WEy~w~~Slip~~~G~~s~~ 99 (195)
..|+|++=|-|.||-+.+.++++-.+.-+...+
T Consensus 45 dgi~e~~nplp~ww~~~f~~~iv~~~~y~~~yp 77 (311)
T 3mk7_C 45 DGIEEYDNPLPRWWFLLFIGTLVFGILYLVLYP 77 (311)
T ss_dssp TTBCBCCCCCCHHHHHHHHHHHHHHHHHHHHST
T ss_pred cChhhccCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999888777766555
No 9
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=15.30 E-value=2.2e+02 Score=17.65 Aligned_cols=26 Identities=15% Similarity=0.200 Sum_probs=15.7
Q ss_pred HHHhhHHHHHHHHhhHHHHHHHhhcCCC
Q psy8501 114 VAFGYMPILYAVIYYFHDFWTYITLDPD 141 (195)
Q Consensus 114 ~ifgi~Pl~~g~~~~~~~~~~y~~~~~~ 141 (195)
.++|+.|+-.. ..|-.++..++.|+.
T Consensus 9 IVlGlipvtla--GLfv~Ay~QyrRg~~ 34 (37)
T 1q90_G 9 IVLGLVPVTIA--GLFVTAYLQYLRGDL 34 (37)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHC----
T ss_pred HHHhhHHHHHH--HHHHHHHHHHhhccc
Confidence 44788888666 677777777776664
No 10
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.25.1.1
Probab=11.53 E-value=82 Score=25.32 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=33.5
Q ss_pred hHHHHHHHHHH------HHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhh
Q psy8501 80 WEYIWCFSLLV------SFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYY 128 (195)
Q Consensus 80 WEy~w~~Slip------~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~ 128 (195)
++.+++-+++. .-.+..+.+|||.+..+..+..+.++|+.-+..-..|+
T Consensus 66 ~~~~~lnT~iLl~Ss~t~~~A~~a~~~~~~~~~~~~L~~t~~LG~~Fl~~q~~Ey 120 (204)
T 1fft_C 66 LPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFIGMEIYEF 120 (204)
T ss_dssp HHHHHHHHHHHGGGTTTTTSGGGTTTTCCGGGGTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565544442 22344567889999999999999998888776655444
Done!