Query psy8501
Match_columns 195
No_of_seqs 77 out of 79
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 20:34:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8501.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8501hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56c_ f.25.1.1 (C:) Bacteria 29.1 1.2E+02 0.0084 23.3 11.0 96 74-182 10-105 (265)
2 d16vpa_ d.180.1.1 (A:) Conserv 23.5 18 0.0013 30.6 2.2 47 17-66 160-208 (356)
3 d1o75a1 b.1.20.1 (A:207-332) T 16.1 25 0.0018 25.2 1.3 13 11-23 32-44 (126)
4 d1v54c_ f.25.1.1 (C:) Mitochon 13.2 2.6E+02 0.019 21.1 10.2 56 74-136 8-63 (259)
5 d1c41a_ c.16.1.1 (A:) Lumazine 11.8 57 0.0042 25.1 2.5 65 5-89 1-65 (195)
6 d2afwa1 c.56.5.8 (A:33-361) Gl 9.3 26 0.0019 27.5 -0.5 23 5-28 43-65 (329)
7 d1v54c_ f.25.1.1 (C:) Mitochon 9.2 2.4E+02 0.017 21.4 5.5 56 78-140 123-184 (259)
8 d1y0na_ d.291.1.1 (A:) Hypothe 8.8 49 0.0036 21.9 0.9 24 10-33 27-51 (78)
9 d1fftc_ f.25.1.1 (C:) Cytochro 7.7 82 0.006 22.7 1.9 35 93-127 67-101 (185)
10 d1u6ea2 c.95.1.2 (A:175-317) K 7.6 33 0.0024 24.3 -0.6 47 52-105 51-97 (148)
No 1
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=29.11 E-value=1.2e+02 Score=23.30 Aligned_cols=96 Identities=16% Similarity=0.285 Sum_probs=54.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHhhcCCCCCcccchhhhhc
Q psy8501 74 IPKPLLWEYIWCFSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYYFHDFWTYITLDPDEDIEDKEITMWQ 153 (195)
Q Consensus 74 ip~p~~WEy~w~~Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 153 (195)
+|+|.+|-..-.++++...+|....-.++... ..+.|+.-++++...-+-|+.+--..|+.+ ...=+
T Consensus 10 ~~~~SpWPi~~s~~l~~~~~g~~~~~~~~~~~-------~~~~g~~~~l~~l~~W~~dv~~e~~~G~~t------~~v~~ 76 (265)
T d1m56c_ 10 ILPPSIWPFMASVGAFVMLFGAVLWMHGSGPW-------MGLIGLVVVLYTMFGWWSDVVTESLEGDHT------PVVRL 76 (265)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHTTSCTH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCC------HHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHcccHH-------HHHHHHHHHHHHHHHHHHHHhHHHHcCCCc------hhhhh
Confidence 56677798887888888888876655443222 233566667777766677877665545441 11223
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8501 154 GYPYALLWYIFIVLALQVHTFSLYFSNNL 182 (195)
Q Consensus 154 G~P~~~l~Y~f~~~a~QvH~f~lyf~~kL 182 (195)
|+-.+..++++-=+.+=.=.|.-||-.++
T Consensus 77 ~~k~Gm~~Fi~SEvm~F~~~f~~yf~~~~ 105 (265)
T d1m56c_ 77 GLRWGFILFIMSEVMFFSAWFWSFFKHAL 105 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666654333222222444554443
No 2
>d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory protein vp16 {Herpes simplex virus type 1 [TaxId: 10298]}
Probab=23.47 E-value=18 Score=30.58 Aligned_cols=47 Identities=32% Similarity=0.484 Sum_probs=33.1
Q ss_pred chhHhhhHhHHhhHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhH
Q psy8501 17 SHRQQIASHYQTSVLNKTRLKYTIFFHYLLFFV--MLAKLSADILDRLDIFI 66 (195)
Q Consensus 17 ~hRerVas~Yq~Sa~~KsrLK~l~~~h~ll~l~--~~akl~~~~l~~l~i~~ 66 (195)
+.||-|+++|.+=+ +||-+++++|.-+.+. +.-++.++..+.=|+|.
T Consensus 160 ~~rq~i~~rYYRE~---arLArllylHLYls~tRevswrl~A~Q~~~q~vF~ 208 (356)
T d16vpa_ 160 MLRATIADRYYRET---ARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFD 208 (356)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 56899999999876 4677899999988772 33345555555555443
No 3
>d1o75a1 b.1.20.1 (A:207-332) Tp47 lipoprotein, middle and C-terminal domains {Treponema pallidum [TaxId: 160]}
Probab=16.09 E-value=25 Score=25.17 Aligned_cols=13 Identities=46% Similarity=0.866 Sum_probs=11.8
Q ss_pred CCCCCCchhHhhh
Q psy8501 11 TDGTDFSHRQQIA 23 (195)
Q Consensus 11 TDGSDF~hRerVa 23 (195)
.|||..+|||-++
T Consensus 32 adgselshrefid 44 (126)
T d1o75a1 32 ADGSELSHREFID 44 (126)
T ss_dssp TTSCCCCHHHHHH
T ss_pred cccccccHHHHHH
Confidence 5999999999886
No 4
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.21 E-value=2.6e+02 Score=21.13 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=36.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHh
Q psy8501 74 IPKPLLWEYIWCFSLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYYFHDFWTYI 136 (195)
Q Consensus 74 ip~p~~WEy~w~~Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~~~~~~~y~ 136 (195)
+|+|.+|-..-.++++...+|.... ++.......++|+.-++++...-+-|+..=-
T Consensus 8 ~v~~SpWP~~~s~~~~~~~~g~~~~-------~~~~~~~~~~~gl~~~~~~~~~W~rdvi~E~ 63 (259)
T d1v54c_ 8 MVNPSPWPLTGALSALLMTSGLTMW-------FHFNSMTLLMIGLTTNMLTMYQWWRDVIRES 63 (259)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHH-------HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHHHHHHHHHH-------HHhccHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5566669888788888888887543 3333334455677777777777777765433
No 5
>d1c41a_ c.16.1.1 (A:) Lumazine synthase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Probab=11.84 E-value=57 Score=25.06 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=42.7
Q ss_pred CCcccCCCCCCCchhHhhhHhHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHhhhcCCCcchhHHHH
Q psy8501 5 GMYVTGTDGTDFSHRQQIASHYQTSVLNKTRLKYTIFFHYLLFFVMLAKLSADILDRLDIFILEIEELLIPKPLLWEYIW 84 (195)
Q Consensus 5 G~rasGTDGSDF~hRerVas~Yq~Sa~~KsrLK~l~~~h~ll~l~~~akl~~~~l~~l~i~~~~~~~l~ip~p~~WEy~w 84 (195)
||.|.=.|||+.+-==.++.=|......- ..-+.+.|+..|+....++...+|-. ||.|+
T Consensus 1 ~p~~~~~d~s~lrI~IV~s~~n~~I~d~L------------------l~ga~~~L~~~Gv~~~~i~v~~VPGa--~ElP~ 60 (195)
T d1c41a_ 1 GPTPQQHDGSALRIGIVHARWNETIIEPL------------------LAGTKAKLLACGVKESNIVVQSVPGS--WELPI 60 (195)
T ss_dssp CCCCCCCCCSSCCEEEEEECTTHHHHHHH------------------HHHHHHHHHHTTCCGGGEEEEEESST--THHHH
T ss_pred CCCCCCCCCCCCEEEEEEccCCHHHHHHH------------------HHHHHHHHHHcCCCcccCeEEECCcH--HHHHH
Confidence 79999999999876544444444433211 12234556666776666677889888 99999
Q ss_pred HHHHH
Q psy8501 85 CFSLL 89 (195)
Q Consensus 85 ~~Sli 89 (195)
.+.-+
T Consensus 61 a~~~l 65 (195)
T d1c41a_ 61 AVQRL 65 (195)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 6
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.27 E-value=26 Score=27.46 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=13.1
Q ss_pred CCcccCCCCCCCchhHhhhHhHHh
Q psy8501 5 GMYVTGTDGTDFSHRQQIASHYQT 28 (195)
Q Consensus 5 G~rasGTDGSDF~hRerVas~Yq~ 28 (195)
+||++||+|.+ +=|+-+.++.++
T Consensus 43 ~pR~~Gs~g~~-~a~~~i~~~~~~ 65 (329)
T d2afwa1 43 IERYPGSPGSY-AARQHIMQRIQR 65 (329)
T ss_dssp SCCCTTSHHHH-HHHHHHHHHHHT
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHH
Confidence 57777777765 334444544443
No 7
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.19 E-value=2.4e+02 Score=21.40 Aligned_cols=56 Identities=11% Similarity=-0.053 Sum_probs=36.7
Q ss_pred chhHHHHHH------HHHHHHHhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHhhcCC
Q psy8501 78 LLWEYIWCF------SLLVSFLGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIYYFHDFWTYITLDP 140 (195)
Q Consensus 78 ~~WEy~w~~------Slip~~~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~~~~~~~~y~~~~~ 140 (195)
.+|+.+.+- |-+..-.+..+.++||-+..+.....+.++|+.= ..-+..||...+-
T Consensus 123 ~~~~lpllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~F-------l~~q~~Ey~~~~~ 184 (259)
T d1v54c_ 123 NPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYF-------TLLQASEYYEAPF 184 (259)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHCSS
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH-------HHHHHHHhhccCC
Confidence 457766544 3334445778889999988888877777666543 3345667776544
No 8
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.84 E-value=49 Score=21.92 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=9.4
Q ss_pred CCC-CCCCchhHhhhHhHHhhHhhh
Q psy8501 10 GTD-GTDFSHRQQIASHYQTSVLNK 33 (195)
Q Consensus 10 GTD-GSDF~hRerVas~Yq~Sa~~K 33 (195)
||| |.+++.=+||+.-.+.-.+++
T Consensus 27 GTDyG~E~sl~~kv~qv~~qL~~G~ 51 (78)
T d1y0na_ 27 GTDNGDETPLDVRVERARHALRRGE 51 (78)
T ss_dssp -------CCHHHHHHHHHHHHHTTS
T ss_pred CccccccccHHHHHHHHHHHHHcCC
Confidence 444 345555566665555444433
No 9
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=7.72 E-value=82 Score=22.67 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=26.9
Q ss_pred HhhhhccccchhhHHHHHHHHHHHhhHHHHHHHHh
Q psy8501 93 LGLSSIRKNNISTMKKYVYGIVAFGYMPILYAVIY 127 (195)
Q Consensus 93 ~G~~s~~RN~i~~l~~y~~~~~ifgi~Pl~~g~~~ 127 (195)
.+..+.+||+.+..+.+...+.++|+.-+..-..|
T Consensus 67 ~a~~~~~~~~~~~~~~~L~~t~~lG~~Fl~~q~~e 101 (185)
T d1fftc_ 67 MAAIAMYKNNKSQVISWLALTWLFGAGFIGMEIYE 101 (185)
T ss_dssp SGGGTTTTCCGGGGTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456789999999999999999998777555444
No 10
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.63 E-value=33 Score=24.34 Aligned_cols=47 Identities=6% Similarity=0.055 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhhhhHHhHhhhcCCCcchhHHHHHHHHHHHHHhhhhccccchhh
Q psy8501 52 AKLSADILDRLDIFILEIEELLIPKPLLWEYIWCFSLLVSFLGLSSIRKNNIST 105 (195)
Q Consensus 52 akl~~~~l~~l~i~~~~~~~l~ip~p~~WEy~w~~Slip~~~G~~s~~RN~i~~ 105 (195)
.++.-+.|++-++...+|+.+-..++..+ ++-.+.-.++++++++-.
T Consensus 51 ~~~i~~~L~~~gl~~~dId~~i~Hqa~~~-------i~~~v~~~lgl~~ek~~~ 97 (148)
T d1u6ea2 51 GDVGRRAMDAAGVRPDQIDVFVPHQANSR-------INELLVKNLQLRPDAVVA 97 (148)
T ss_dssp HHHHHHHHHHHTCCGGGCCEEEECCSCHH-------HHHHHHHHHTCCTTCEEC
T ss_pred HHHHHHHHHHcCCCcccccEEEeccccHH-------HHHHHHHhcCCCchhhhh
Confidence 56667888888888888888888888533 444555666788877543
Done!